Dev Update by dario-coscia · Pull Request #582 · mathLab/PINA

dario-coscia · 2025-05-30T08:48:56Z

Description

This PR fixes #539
This PR fixes #515

Also, it proposes updates for the following issues:

Checklist

Code follows the project’s Code Style Guidelines
Tests have been added or updated
Documentation has been updated if necessary
Pull request is linked to an open issue

--------- Co-authored-by: Dario Coscia <93731561+dario-coscia@users.noreply.github.com>

dario-coscia · 2025-05-30T08:50:34Z

There seems to be a problem with the tutorial exporter, lemme figure it out before merging

github-actions · 2025-05-30T08:53:31Z

Code Coverage Summary

Filename                                                       Stmts    Miss  Cover    Missing
-----------------------------------------------------------  -------  ------  -------  ---------------------------------------------------------------------------------------------------------------------
__init__.py                                                        7       0  100.00%
graph.py                                                         114      11  90.35%   99-100, 112, 124, 126, 142, 144, 166, 169, 182, 271
label_tensor.py                                                  251      32  87.25%   81, 121, 144-148, 165, 177, 182, 188-193, 273, 280, 332, 334, 348, 444-447, 490, 537, 629, 649-651, 664-673, 688, 710
operator.py                                                       72       5  93.06%   250-268, 459
operators.py                                                       6       6  0.00%    3-12
plotter.py                                                         1       1  0.00%    3
trainer.py                                                        75       6  92.00%   195-204, 293, 314, 318, 322
type_checker.py                                                   22       0  100.00%
utils.py                                                          60       8  86.67%   113, 150, 153, 156, 192-195
adaptive_function/__init__.py                                      3       0  100.00%
adaptive_function/adaptive_function.py                            55       0  100.00%
adaptive_function/adaptive_function_interface.py                  51       6  88.24%   98, 141, 148-151
adaptive_functions/__init__.py                                     6       6  0.00%    3-12
callback/__init__.py                                               5       0  100.00%
callback/linear_weight_update_callback.py                         28       1  96.43%   63
callback/optimizer_callback.py                                    22       1  95.45%   34
callback/processing_callback.py                                   49       5  89.80%   42-43, 73, 168, 171
callback/refinement/__init__.py                                    3       0  100.00%
callback/refinement/r3_refinement.py                              28       1  96.43%   88
callback/refinement/refinement_interface.py                       50       5  90.00%   32, 59, 67, 72, 78
callbacks/__init__.py                                              6       6  0.00%    3-12
condition/__init__.py                                              7       0  100.00%
condition/condition.py                                            35       8  77.14%   23, 127-128, 131-132, 135-136, 151
condition/condition_interface.py                                  37       4  89.19%   31, 76, 100, 122
condition/data_condition.py                                       26       1  96.15%   56
condition/domain_equation_condition.py                            19       0  100.00%
condition/input_equation_condition.py                             44       1  97.73%   129
condition/input_target_condition.py                               44       1  97.73%   125
data/__init__.py                                                   3       0  100.00%
data/data_module.py                                              201      22  89.05%   41-52, 132, 172, 193, 232, 313-317, 323-327, 399, 466, 546, 637, 639
data/dataset.py                                                   85       7  91.76%   42, 123-126, 256, 307
domain/__init__.py                                                10       0  100.00%
domain/cartesian.py                                              112      10  91.07%   37, 47, 75-76, 92, 97, 103, 246, 256, 264
domain/difference_domain.py                                       25       2  92.00%   54, 87
domain/domain_interface.py                                        20       5  75.00%   37-41
domain/ellipsoid.py                                              104      24  76.92%   52, 56, 127, 250-257, 269-282, 286-287, 290, 295
domain/exclusion_domain.py                                        28       1  96.43%   86
domain/intersection_domain.py                                     28       1  96.43%   85
domain/operation_interface.py                                     26       1  96.15%   88
domain/simplex.py                                                 72      14  80.56%   62, 207-225, 246-247, 251, 256
domain/union_domain.py                                            25       1  96.00%   43
equation/__init__.py                                               4       0  100.00%
equation/equation.py                                              11       0  100.00%
equation/equation_factory.py                                      24      10  58.33%   37, 62-75, 97-110, 132-145
equation/equation_interface.py                                     4       0  100.00%
equation/system_equation.py                                       22       0  100.00%
geometry/__init__.py                                               7       7  0.00%    3-15
loss/__init__.py                                                   7       0  100.00%
loss/loss_interface.py                                            17       2  88.24%   45, 51
loss/lp_loss.py                                                   15       0  100.00%
loss/ntk_weighting.py                                             26       0  100.00%
loss/power_loss.py                                                15       0  100.00%
loss/scalar_weighting.py                                          16       0  100.00%
loss/weighting_interface.py                                        6       0  100.00%
model/__init__.py                                                 10       0  100.00%
model/average_neural_operator.py                                  31       2  93.55%   73, 82
model/deeponet.py                                                 93      13  86.02%   187-190, 209, 240, 283, 293, 303, 313, 323, 333, 488, 498
model/feed_forward.py                                             89      11  87.64%   58, 195, 200, 278-292
model/fourier_neural_operator.py                                  78      10  87.18%   96-100, 110, 155-159, 218, 220, 242, 342
model/graph_neural_operator.py                                    40       2  95.00%   58, 60
model/kernel_neural_operator.py                                   34       6  82.35%   83-84, 103-104, 123-124
model/low_rank_neural_operator.py                                 27       2  92.59%   89, 98
model/multi_feed_forward.py                                       12       5  58.33%   25-31
model/spline.py                                                   89      37  58.43%   30, 41-66, 69, 128-132, 135, 159-177, 180
model/block/__init__.py                                           12       0  100.00%
model/block/average_neural_operator_block.py                      12       0  100.00%
model/block/convolution.py                                        64      13  79.69%   77, 81, 85, 91, 97, 111, 114, 151, 161, 171, 181, 191, 201
model/block/convolution_2d.py                                    146      27  81.51%   155, 162, 282, 314, 379-433, 456
model/block/embedding.py                                          48       7  85.42%   93, 143-146, 155, 168
model/block/fourier_block.py                                      31       0  100.00%
model/block/gno_block.py                                          22       4  81.82%   73-77, 87
model/block/integral.py                                           18       4  77.78%   22-25, 71
model/block/low_rank_block.py                                     24       0  100.00%
model/block/orthogonal.py                                         37       0  100.00%
model/block/pod_block.py                                          73      10  86.30%   55-58, 70, 83, 113, 148-153, 187, 212
model/block/rbf_block.py                                         179      25  86.03%   18, 42, 53, 64, 75, 86, 97, 223, 280, 282, 298, 301, 329, 335, 363, 367, 511-524
model/block/residual.py                                           46       0  100.00%
model/block/spectral.py                                           83       4  95.18%   132, 140, 262, 270
model/block/stride.py                                             28       7  75.00%   55, 58, 61, 67, 72-74
model/block/utils_convolution.py                                  22       3  86.36%   58-60
model/block/message_passing/__init__.py                            5       0  100.00%
model/block/message_passing/deep_tensor_network_block.py          21       0  100.00%
model/block/message_passing/en_equivariant_network_block.py       39       0  100.00%
model/block/message_passing/interaction_network_block.py          23       0  100.00%
model/block/message_passing/radial_field_network_block.py         20       0  100.00%
model/layers/__init__.py                                           6       6  0.00%    3-12
optim/__init__.py                                                  5       0  100.00%
optim/optimizer_interface.py                                       7       0  100.00%
optim/scheduler_interface.py                                       7       0  100.00%
optim/torch_optimizer.py                                          14       0  100.00%
optim/torch_scheduler.py                                          19       2  89.47%   5-6
problem/__init__.py                                                6       0  100.00%
problem/abstract_problem.py                                      117      18  84.62%   39-40, 59-70, 115-120, 149, 161, 179, 253, 257, 286
problem/inverse_problem.py                                        22       0  100.00%
problem/parametric_problem.py                                      8       1  87.50%   29
problem/spatial_problem.py                                         8       0  100.00%
problem/time_dependent_problem.py                                  8       0  100.00%
problem/zoo/__init__.py                                            8       0  100.00%
problem/zoo/advection.py                                          33       7  78.79%   36-38, 52, 108-110
problem/zoo/allen_cahn.py                                         20       6  70.00%   20-22, 34-36
problem/zoo/diffusion_reaction.py                                 29       5  82.76%   94-104
problem/zoo/helmholtz.py                                          30       6  80.00%   36-42, 103-107
problem/zoo/inverse_poisson_2d_square.py                          31       0  100.00%
problem/zoo/poisson_2d_square.py                                  19       3  84.21%   65-70
problem/zoo/supervised_problem.py                                 11       0  100.00%
solver/__init__.py                                                 6       0  100.00%
solver/garom.py                                                  107       2  98.13%   129-130
solver/solver.py                                                 188      10  94.68%   192, 215, 287, 290-291, 350, 432, 515, 556, 562
solver/ensemble_solver/__init__.py                                 4       0  100.00%
solver/ensemble_solver/ensemble_pinn.py                           23       1  95.65%   104
solver/ensemble_solver/ensemble_solver_interface.py               27       0  100.00%
solver/ensemble_solver/ensemble_supervised.py                      9       0  100.00%
solver/physics_informed_solver/__init__.py                         8       0  100.00%
solver/physics_informed_solver/causal_pinn.py                     47       3  93.62%   157, 166-167
solver/physics_informed_solver/competitive_pinn.py                58       0  100.00%
solver/physics_informed_solver/gradient_pinn.py                   17       0  100.00%
solver/physics_informed_solver/pinn.py                            18       0  100.00%
solver/physics_informed_solver/pinn_interface.py                  47       1  97.87%   130
solver/physics_informed_solver/rba_pinn.py                        35       3  91.43%   155-158
solver/physics_informed_solver/self_adaptive_pinn.py              90       3  96.67%   315-318
solver/supervised_solver/__init__.py                               4       0  100.00%
solver/supervised_solver/reduced_order_model.py                   24       1  95.83%   137
solver/supervised_solver/supervised.py                             7       0  100.00%
solver/supervised_solver/supervised_solver_interface.py           25       0  100.00%
solvers/__init__.py                                                6       6  0.00%    3-12
solvers/pinns/__init__.py                                          6       6  0.00%    3-12
TOTAL                                                           4659     504  89.18%

Results for commit: 067fceb

Minimum allowed coverage is 80.123%

♻️ This comment has been updated with latest results

GiovanniCanali · 2025-05-30T09:04:29Z

There seems to be a problem with the tutorial exporter, lemme figure it out before merging

Also #516 ready for review. If you want, we can incorporate that PR in this release.

* add deep tensor network block * add interaction network block * add radial field network block * add schnet block * add equivariant network block * fix + tests + doc files * fix egnn + equivariance/invariance tests Co-authored-by: Dario Coscia <dariocos99@gmail.com> --------- Co-authored-by: giovanni <giovanni.canali98@yahoo.it> Co-authored-by: AleDinve <giuseppealessio.d@student.unisi.it>

* Fix adaptive refinement (mathLab#571) --------- Co-authored-by: Dario Coscia <93731561+dario-coscia@users.noreply.github.com> * Remove collector * Fixes * Fixes * rm unnecessary comment * fix advection (mathLab#581) * Fix tutorial .html link (mathLab#580) * fix problem data collection for v0.1 (mathLab#584) * Message Passing Module (mathLab#516) * add deep tensor network block * add interaction network block * add radial field network block * add schnet block * add equivariant network block * fix + tests + doc files * fix egnn + equivariance/invariance tests Co-authored-by: Dario Coscia <dariocos99@gmail.com> --------- Co-authored-by: giovanni <giovanni.canali98@yahoo.it> Co-authored-by: AleDinve <giuseppealessio.d@student.unisi.it> * add type checker (mathLab#527) --------- Co-authored-by: Filippo Olivo <filippo@filippoolivo.com> Co-authored-by: Giovanni Canali <115086358+GiovanniCanali@users.noreply.github.com> Co-authored-by: giovanni <giovanni.canali98@yahoo.it> Co-authored-by: AleDinve <giuseppealessio.d@student.unisi.it>

FilippoOlivo and others added 7 commits May 16, 2025 14:45

Fix adaptive refinement (#571)

ac0437b

--------- Co-authored-by: Dario Coscia <93731561+dario-coscia@users.noreply.github.com>

Remove collector

cf29edf

Fixes

2885f9a

Fixes

2bb8319

rm unnecessary comment

e1d1331

fix advection (#581)

254ec8e

Fix tutorial .html link (#580)

9719bc8

dario-coscia assigned dario-coscia, GiovanniCanali and FilippoOlivo May 30, 2025

dario-coscia added the maintenance label May 30, 2025

dario-coscia added the pr-to-fix Label for PR that needs modification label May 30, 2025

dario-coscia and others added 2 commits May 30, 2025 14:16

fix problem data collection for v0.1 (#584)

facc4a0

dario-coscia added pr-to-review Label for PR that are ready to been reviewed and removed pr-to-fix Label for PR that needs modification labels Jun 2, 2025

dario-coscia requested review from FilippoOlivo and ndem0 June 2, 2025 14:43

FilippoOlivo approved these changes Jun 3, 2025

View reviewed changes

dario-coscia requested a review from GiovanniCanali June 3, 2025 07:17

GiovanniCanali approved these changes Jun 3, 2025

View reviewed changes

dario-coscia added pr-to-fix Label for PR that needs modification and removed pr-to-review Label for PR that are ready to been reviewed labels Jun 4, 2025

dario-coscia and others added 2 commits June 11, 2025 15:16

rm SchNet

dfa9e81

add type checker (#527)

067fceb

dario-coscia merged commit 7bf7d34 into master Jun 13, 2025
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Dev Update#582

Dev Update#582
dario-coscia merged 11 commits into
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dario-coscia commented May 30, 2025 •

edited by FilippoOlivo

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dario-coscia commented May 30, 2025 •

edited by FilippoOlivo

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