docs: refresh stale path references in docs/CLAUDE.md (#2739)

Author: worktrunk-bot

docs/CLAUDE.md

@@ -117,12 +117,12 @@ wt <command> --help-page
 ```
 
 The generated content includes:
-1. **Conceptual documentation** — from `after_long_help` in `src/cli.rs`
+1. **Conceptual documentation** — from `after_long_help` in `src/cli/mod.rs`
 2. **Command Reference section** — the standard `--help` output
 
 ### Editing command docs
 
-**To update command documentation, edit `src/cli.rs`**, not the markdown files directly.
+**To update command documentation, edit `src/cli/mod.rs`**, not the markdown files directly.
 
 - **Conceptual content** — Edit the `after_long_help` attribute on the command
 - **Usage/options/examples** — Edit the clap attributes (`about`, `long_about`, doc comments on args)
@@ -135,7 +135,7 @@ cargo test --test integration test_docs_are_in_sync
 
 ### Command documentation structure
 
-Each command has three documentation pieces in `src/cli.rs`:
+Each command has three documentation pieces in `src/cli/mod.rs`:
 
 | Piece | Source | Purpose |
 |-------|--------|---------|
@@ -179,7 +179,7 @@ Each command has three documentation pieces in `src/cli.rs`:
 
 ### Example output expansion (wt list)
 
-The `wt list` examples use **HTML comments + code blocks** that expand to full snapshot output. In `cli.rs`, you write:
+The `wt list` examples use **HTML comments + code blocks** that expand to full snapshot output. In `src/cli/mod.rs`, you write:
 
 `````
 <!-- wt list -->
@@ -218,7 +218,7 @@ This renders differently in each context:
 3. Accept snapshots: `cargo insta accept`
 4. Sync docs: `cargo test --test integration test_docs_are_in_sync`
 
-The examples in `cli.rs` are just command stubs — the actual output comes from snapshots generated by integration tests. This ensures docs always match real CLI behavior.
+The examples in `src/cli/mod.rs` are just command stubs — the actual output comes from snapshots generated by integration tests. This ensures docs always match real CLI behavior.
 
 ### Code block convention
 
@@ -246,7 +246,7 @@ Content in `after_long_help` must work in **both** the terminal (`--help`) and t
 
 ### Post-processing for web docs
 
-The `--help-page` generator in `src/main.rs` applies post-processing to transform CLI-friendly content into web-friendly HTML:
+The `--help-page` generator in `src/help.rs` applies post-processing to transform CLI-friendly content into web-friendly HTML:
 
 | CLI Source | Web Output |
 |------------|------------|
@@ -271,7 +271,7 @@ Include subcommand documentation as H2 sections within a parent command's docs p
 <!-- subdoc: subcommand-name -->
 ```
 
-In `cli.rs`, add the placeholder anywhere in the parent command's `after_long_help`:
+In `src/cli/mod.rs`, add the placeholder anywhere in the parent command's `after_long_help`:
 
 ```rust
 after_long_help = r#"...main documentation...