Mcdc cgmf hpc

mcdc/.dockerignore

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+# Git
+.git
+.github
+
+# Build artifacts
+build
+.eggs
+mcdc.egg-info
+dist/
+
+# Material / cross-section data
+mcdc_xs
+MCDC-Xsec
+
+# Python cache
+__pycache__
+*.pyc
+*.nbc
+*.nbi
+
+# GPU cache
+__ptxcache__
+__harmonize_cache__
+
+# Editor files
+.spyproject
+*.swp
+.vscode/
+**/.idea
+
+# Virtual environments
+.venv
+venv
+env
+
+# Output files
+*output.h5
+output*.h5
+*.h5
+*.hdf5
+*.png
+*.mp4
+*.gif
+
+# Cluster job files
+*.out
+*.pbs
+*.log
+
+# Test cache
+.pytest_cache
+pytestdebug.log
+.coverage
+htmlcov
+
+# Profiler
+*.prof
+
+# Documentation builds
+docs/build
+docs/source/pythonapi/generated/
+docs
+
+# Container artifacts
+*.sif
+*_sandbox
+*.tar
+containers/
+
+# Misc
+tmp
+tmp.py
+tmp_*
+*_tmp.py
+*.core
+.DS_Store
+**/.DS_Store
+# Git
+.git
+.github
+
+# Build artifacts
+build
+.eggs
+mcdc.egg-info
+dist/
+
+# Material / cross-section data
+mcdc_xs
+MCDC-Xsec
+
+# Python cache
+__pycache__
+*.pyc
+*.nbc
+*.nbi
+
+# GPU cache
+__ptxcache__
+__harmonize_cache__
+
+# Editor files
+.spyproject
+*.swp
+.vscode/
+**/.idea
+
+# Virtual environments
+.venv
+venv
+env
+
+# Output files
+*output.h5
+output*.h5
+*.h5
+*.hdf5
+*.png
+*.mp4
+*.gif
+
+# Cluster job files
+*.out
+*.pbs
+*.log
+
+# Test cache
+.pytest_cache
+pytestdebug.log
+.coverage
+htmlcov
+
+# Profiler
+*.prof
+
+# Documentation builds
+docs/build
+docs/source/pythonapi/generated/
+docs
+
+# Container artifacts
+*.sif
+*_sandbox
+*.tar
+containers/
+
+# Misc
+tmp
+tmp.py
+tmp_*
+*_tmp.py
+*.core
+.DS_Store
+**/.DS_Store
+*.csv
+
+# Regression test data
+dummy_nuclide.h5
+source_particles.h5
+*.csv
+
+# Regression test data
+dummy_nuclide.h5
+source_particles.h5

mcdc/.git-blame-ignore-revs

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+# Run code through autopep8
+482f6e642f4e7a4a2a6f82fe5f1dd739af6b61e8
+
+# Run code through black
+af5dbfc6d12716cd91155e8c85fa350b13c28d8e
+0c3b4f8a61617f66956c71f206b961a5ced0d5ab

mcdc/.github/ISSUE_TEMPLATE/bug_report.md

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+---
+name: Bug report
+about: Create a report to help us improve
+title: '[Bug] '
+labels: 'bug'
+assignees: ''
+
+---
+<!-- Delete all sections not applicable -->
+
+# Describe the bug.
+
+A clear description of what the bug is, with code blocks wherever possible.
+
+# Steps to reproduce the bug.
+
+Steps to reproduce the behavior (ideally as a minimum example of where the failure is coming from with code blocks for error messages and inputs):
+1. Outline what you did.
+
+## What inputs and outputs are involved?
+
+If applicable, add what you ran or received to help explain your problem.
+If there are relevant configuration files, please provide those as well.
+
+## Are there additional replication details?
+
+ - Operating System:
+ - Software Version:
+ - Python Version: 
+
+# What is the expected behavior?
+
+A clear description of what you expected to happen.
+
+# Additional context.
+
+Add any other context about the problem here.
+
+# How can this issue be closed?

mcdc/.github/ISSUE_TEMPLATE/feature_request.md

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+---
+name: Feature request
+about: Suggest an idea for this project
+title: '[Feature] '
+labels: 'enhancement'
+assignees: ''
+
+---
+<!-- Delete all sections not applicable -->
+
+# Is your feature request related to a problem? Please describe.
+
+Describe the problem here.
+
+# Describe the feature you'd like.
+
+A clear description of what you want to happen.
+
+## Describe alternatives you've considered.
+
+A clear description of any alternative solutions or features you've considered.
+
+# Additional context.
+
+Add any other context or code blocks about the feature request here.
+
+# How can this issue be closed?

mcdc/.github/ISSUE_TEMPLATE/general.md

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+---
+name: Generic issue 
+about: Bare template for general needs
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+# Description
+
+# How can this issue be closed?

mcdc/.github/ISSUE_TEMPLATE/question.md

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+---
+name: Question or Discussion
+about: Ask a question or start a discussion about this project
+title: "[Question] "
+labels: 'question'
+assignees: ''
+
+---
+<!-- Delete all sections not applicable -->-
+
+# Question or discussion topic.
+
+Please describe your question or the topic you want to discuss.
+
+## Provide details.
+
+Provide any relevant details, context, or background information that might help others 
+understand your question or discussion topic.
+
+## External context or references.
+
+Add any other context, reference links, or screenshots about the question or discussion 
+topic here.
+
+# How can this issue be closed?

mcdc/.github/pull_request_template.md

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+## Summary of changes
+<!--
+    In at least one sentence, describe the PR you are submitting.
+-->
+
+## Types of changes
+<!---
+    What types of changes does your code introduce? Put an `x` in all the boxes that apply:
+-->
+
+- [ ] Bug fix (non-breaking change which fixes an issue)
+- [ ] New feature (non-breaking change which adds functionality)
+- [ ] Breaking change (fix or feature that would cause existing functionality to change)
+- [ ] Organization and beautification (changes which improve readability and/or accessibility)
+
+## Developer Checklist
+<!---
+    Please review the following checklist, and ensure you have addressed each item. Put an `x` in all boxes once completed.
+-->
+
+- [ ] I have read the [contributing guide](https://mcdc.readthedocs.io/en/latest/contribution/index.html).
+- [ ] My code follows the [code style](https://mcdc.readthedocs.io/en/latest/contribution/index.html#code-styling) of this project.
+- [ ] I have updated the documentation accordingly. <!-- Delete if not applicable -->
+- [ ] I have added tests to cover my changes. <!-- Delete if not applicable -->
+- [ ] All new and existing tests pass <!-- Delete if not applicable -->
+
+## Associated Issues and PRs
+<!--
+    Please note any issues or pull requests associated with this pull request using GitHub keywords. 
+    Note that for multiple issue linking, a keyword must be included before each issue.
+-->
+
+- closes #
+- related to #
+
+## Associated Developers
+<!--
+    Please mention any developers who should be alerted of this PR.
+-->
+
+- Dev: @

mcdc/.github/workflows/black_lint.yml

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+name: Black Style Check
+
+on:
+  push:
+  pull_request:
+
+jobs:
+  black-lint:
+    name: Lint with Black
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.14"
+          cache: pip
+
+      - name: Install Black
+        run: |
+          pip install --upgrade pip
+          pip install black
+
+      - name: Run Black (check mode)
+        run: black --check .