build-codapack-macos

#!/usr/bin/env zsh

set -e

ROOT="$(cd "$(dirname "$0")" && pwd)"

unset R_HOME
export JAVA_HOME=$ROOT/jdk-17
export MAVEN_HOME=$ROOT/apache-maven-3.9.2
export R_HOME=/Applications/CoDaPack.app/Contents/R_internal

export R_LIBS_USER=$ROOT/Rlibraries
export PATH=$JAVA_HOME/bin:$MAVEN_HOME/bin:$R_HOME/bin:$PATH

# Establim locale per evitar advertències d'R
export LC_ALL=en_US.UTF-8
export LANG=en_US.UTF-8

# Permetem executar jdk-17
sudo xattr -dr com.apple.quarantine jdk-17

# Verifiquem que R estigui disponible
command -v R >/dev/null 2>&1 || { echo >&2 "R not found in PATH"; exit 1; }

export R_HOME=$(R RHOME)

# Configura Java a R (important per rJava)
echo "Running javareconf..."
R CMD javareconf

cd "$ROOT"

echo "Building Java package..."
mvn package

echo "Installing R packages..."
Rscript -e "TYPE='source'; LIB='$R_LIBS_USER'; source('install_packages.R')"

# Copiar llibreries R existents
# echo "Copying R libraries..."
# LIBS=( abind doParallel iterators magic pdfCluster rJava 
#   cluster flexmix kernlab MASS prabclus rlang 
#   coda.base foreach knitr mclust Rcpp robustbase 
#   DEoptimR fpc linprog modeltools RcppArmadillo tclust 
#   diptest geometry lpSolve mvtnorm RcppProgress zCompositions )

# mkdir -p "$R_LIBS_USER"

# for lib in $LIBS; do
#     SRC_DIR=$(Rscript -e "cat(find.package('$lib'))")
#     if [ -d "$SRC_DIR" ]; then
#         cp -R "$SRC_DIR" "$R_LIBS_USER/"
#     else
#         echo "Warning: Library $lib not found"
#     fi
# done

echo "Build completed successfully."