build based on 65bfae7

Author: Documenter.jl

julia-docs/dev/docstrings.html

@@ -217,6 +217,8 @@ <h1>Constructors</h1>
 <li><code>Anchor(pos::SVector{3, Float64})</code>: Creates an anchor at the given position with NaN directions and state 0</li>
 <li><code>Anchor(pos::SVector{3, Float64}, dirs::SVector{2, SVector{3, Float64}})</code>: Creates an anchor at the given position with specified directions and state 0</li>
 <li><code>Anchor(pos::SVector{3, Float64}, dirs::SVector{2, SVector{3, Float64}}, state::Int64)</code>: Full constructor with position, directions, and state</li>
+<li><code>Anchor(c::Context, pos, dirs, state)</code>: Construct from context with position, directions, and state</li>
+<li><code>Anchor(c::Context, pos::SVector{3, Float64})</code>: Construct from context at the given position</li>
 </ul>
 </section>
 <section id="fields" class="level1">

julia-docs/dev/docstrings/medyan.anchor-0dc7f056c6ce8b51.html

@@ -210,11 +210,15 @@ <h2 class="anchored" data-anchor-id="union---b2cfd89fb0d1b9c6"><code data-shortc
 <div class="callout-body-container">
 <div class="code-copy-outer-scaffold"><div class="sourceCode" id="cb1"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a>BallIdx <span class="op">&lt;:</span><span class="dt"> Place</span></span></code></pre></div><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></div>
 <p>An index referring to a ball (spherical particle) in the simulation. Balls are stored in the <code>balls</code> vector of the <code>Context</code> and represent spherical objects with position, radius, and stiffness that can participate in mechanical interactions and chemical reactions.</p>
+<p>This index may be invalidated by ball removal or reordering. Use a <code>Tag{BallIdx}</code> for a long-term reference that remains valid across mutations.</p>
 <section id="constructors" class="level1">
 <h1>Constructors</h1>
 <ul>
 <li><code>BallIdx()</code>: Creates a null ball index with idx 0</li>
 <li><code>BallIdx(idx::Int64)</code>: Creates a ball index pointing to the ball at position <code>idx</code> in the context’s balls vector</li>
+<li><code>BallIdx(c::Context, idx::Integer)</code>: Construct from context with index</li>
+<li><code>BallIdx(c::Context, b::BallIdx)</code>: Re-resolve a ball index</li>
+<li><code>BallIdx(c::Context, t::Tag{BallIdx})</code>: Construct from a tag</li>
 </ul>
 </section>
 <section id="fields" class="level1">

julia-docs/dev/docstrings/medyan.ballidx-5a4aba766d557d6a.html

@@ -19,9 +19,13 @@
       "/docstrings/medyan.cubicgrid-fe4b7cc2dceb0431.html",
       "/docstrings/medyan.decimated2monsiteminanglerange-fc006e574376cfff.html",
       "/docstrings/medyan.decimated2monsiterange-8afd8f3188bbcd4a.html",
+      "/docstrings/medyan.filaidx-89c89b8bbef4dbda.html",
+      "/docstrings/medyan.filamonoidx-94fe5a1112741990.html",
+      "/docstrings/medyan.filatipidx-460debd2fef11ad4.html",
       "/docstrings/medyan.filamentendsitegeneral-7a32ac96fb4364ea.html",
       "/docstrings/medyan.filamentmechparams-003aa222b98c6481.html",
       "/docstrings/medyan.filamentsitegeneral-0d87ce44fed17b2c.html",
+      "/docstrings/medyan.membvertidx-4b26f8c9d72f1f49.html",
       "/docstrings/medyan.membranesitediffusing-66734014eb12ddb1.html",
       "/docstrings/medyan.membranespeciesparams-548fecb643fc2599.html",
       "/docstrings/medyan.sysdef-c0c4da7a2b3d4fef.html",

julia-docs/dev/docstrings/medyan.filaidx-89c89b8bbef4dbda.html

@@ -297,6 +297,14 @@ <h5 class="anchored" data-anchor-id="membranes">Membranes</h5>
 <section id="links" class="level5 div" style="margin: 0; break-inside: avoid;">
 <h5 class="anchored" data-anchor-id="links">Links</h5>
 <ul>
+<li><a href="../docstrings/medyan.place-1e917fb34be5e644.qmd"><code>Place</code></a></li>
+<li><a href="../docstrings/medyan.filaidx-89c89b8bbef4dbda.html"><code>FilaIdx</code></a></li>
+<li><a href="../docstrings/medyan.filatipidx-460debd2fef11ad4.html"><code>FilaTipIdx</code></a></li>
+<li><a href="../docstrings/medyan.filamonoidx-94fe5a1112741990.html"><code>FilaMonoIdx</code></a></li>
+<li><a href="../docstrings/medyan.membvertidx-4b26f8c9d72f1f49.html"><code>MembVertIdx</code></a></li>
+<li><a href="../docstrings/medyan.anchor-0dc7f056c6ce8b51.html"><code>Anchor</code></a></li>
+<li><a href="../docstrings/medyan.ballidx-5a4aba766d557d6a.html"><code>BallIdx</code></a></li>
+<li><a href="../docstrings/medyan.tag-e7cddb47b7248b8e.qmd"><code>Tag</code></a></li>
 <li><a href="../docstrings/medyan.tag--518214eeb95e748e.html"><code>tag!</code></a></li>
 <li><a href="../docstrings/medyan.make_link--0fd0bab9dac08837.html"><code>make_link!</code></a></li>
 <li><a href="../docstrings/medyan.remove_link--01531e04ef5077e7.html"><code>remove_link!</code></a></li>