build based on bd99e4a

Author: Documenter.jl

julia-docs/dev/docstrings.html

@@ -216,6 +216,8 @@ <h2 class="anchored" data-anchor-id="union---b2cfd89fb0d1b9c6"><code data-shortc
 <li><p><code>grid::MEDYAN.CubicGrid</code></p></li>
 <li><p><code>time::Float64</code>: time (s)</p></li>
 <li><p><code>stats::MEDYAN.PerformanceStats</code></p></li>
+<li><p><code>rng_key::UInt64</code>: PhiloxRNG key (seed), set once at construction.</p></li>
+<li><p><code>rng_counter::UInt64</code>: PhiloxRNG counter, incremented by each stochastic integrator call.</p></li>
 <li><p><code>β::Float64</code>: inverse kT (1/(nm*pN))</p></li>
 <li><p><code>base_diffusion_coeffs::Vector{Float64}</code>: Diffusion coefficients indexed by diffusing species id (nm²/s)</p></li>
 <li><p><code>membrane_species_params::StaticArraysCore.SVector{NUM_MEMBRANEDIFFUSINGSPECIES, MEDYAN.MembraneSpeciesParams} where NUM_MEMBRANEDIFFUSINGSPECIES</code>: Membrane species parameters indexed by membrane diffusing species id.</p></li>

julia-docs/dev/docstrings/medyan.context-736368ed32b08894.html

@@ -263,6 +263,8 @@ <h2 class="anchored" data-anchor-id="medyan.context-736368ed32b08894"><a href=".
 <li><p><code>grid::MEDYAN.CubicGrid</code></p></li>
 <li><p><code>time::Float64</code>: time (s)</p></li>
 <li><p><code>stats::MEDYAN.PerformanceStats</code></p></li>
+<li><p><code>rng_key::UInt64</code>: PhiloxRNG key (seed), set once at construction.</p></li>
+<li><p><code>rng_counter::UInt64</code>: PhiloxRNG counter, incremented by each stochastic integrator call.</p></li>
 <li><p><code>β::Float64</code>: inverse kT (1/(nm*pN))</p></li>
 <li><p><code>base_diffusion_coeffs::Vector{Float64}</code>: Diffusion coefficients indexed by diffusing species id (nm²/s)</p></li>
 <li><p><code>membrane_species_params::StaticArraysCore.SVector{NUM_MEMBRANEDIFFUSINGSPECIES, MEDYAN.MembraneSpeciesParams} where NUM_MEMBRANEDIFFUSINGSPECIES</code>: Membrane species parameters indexed by membrane diffusing species id.</p></li>

julia-docs/dev/docstrings/src/context.html

@@ -520,6 +520,22 @@ <h3 class="anchored" data-anchor-id="example-snapshot">Example snapshot</h3>
 </details>
 <details>
 <summary>
+rng_key
+</summary>
+<pre class="{julia}"><code>attrs(group)["rng_key"]</code></pre>
+<div class="line-block">Default: No change<br>
+PhiloxRNG seed (<code>UInt64</code>), set once at <code>Context</code> construction.</div>
+</details>
+<details>
+<summary>
+rng_counter
+</summary>
+<pre class="{julia}"><code>attrs(group)["rng_counter"]</code></pre>
+<div class="line-block">Default: No change<br>
+PhiloxRNG counter (<code>UInt64</code>), advanced by each <code>baoab!</code> call.</div>
+</details>
+<details>
+<summary>
 version
 </summary>
 <pre class="{julia}"><code>attrs(group)["version"]</code></pre>
@@ -1031,7 +1047,7 @@ <h3 class="anchored" data-anchor-id="example-snapshot">Example snapshot</h3>
 <p>See <a href="../docstrings/medyan.update_link--67d413cca6fe82eb.html"><code>MEDYAN.update_link!</code></a>.</p>
 <p>The state of link bonds, organized in a nested struct of vector like form. Any static arrays will be unwrapped into a tuple of vectors, in column major order. The “name” attribute of each subgroup and dataset is the corresponding property name in the <code>StructArray</code> Any property in the default state that isn’t in the snapshot will stay at its default value.</p>
 <div id="10" class="cell" data-execution_count="1">
-<div class="code-copy-outer-scaffold"><div class="sourceCode cell-code" id="cb47"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb47-1"><a href="#cb47-1" aria-hidden="true" tabindex="-1"></a>group[<span class="st">"links/8/bs"</span>]</span></code></pre></div><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></div>
+<div class="code-copy-outer-scaffold"><div class="sourceCode cell-code" id="cb49"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb49-1"><a href="#cb49-1" aria-hidden="true" tabindex="-1"></a>group[<span class="st">"links/8/bs"</span>]</span></code></pre></div><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></div>
 <div class="cell-output cell-output-display" data-execution_count="1">
 <pre><code>📂
 └─ 📂 1 🏷️ name =&gt; "1",
@@ -1048,7 +1064,7 @@ <h3 class="anchored" data-anchor-id="example-snapshot">Example snapshot</h3>
 <p>See <a href="../docstrings/medyan.update_link--67d413cca6fe82eb.html"><code>MEDYAN.update_link!</code></a>.</p>
 <p>The state of link, organized in a nested struct of vector like form. Any static arrays will be unwrapped into a tuple of vectors, in column major order. The “name” attribute of each subgroup and dataset is the corresponding property name in the <code>StructArray</code> Any property in the default state that isn’t in the snapshot will stay at its default value.</p>
 <div id="12" class="cell" data-execution_count="1">
-<div class="code-copy-outer-scaffold"><div class="sourceCode cell-code" id="cb49"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb49-1"><a href="#cb49-1" aria-hidden="true" tabindex="-1"></a>group[<span class="st">"links/8/s"</span>]</span></code></pre></div><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></div>
+<div class="code-copy-outer-scaffold"><div class="sourceCode cell-code" id="cb51"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb51-1"><a href="#cb51-1" aria-hidden="true" tabindex="-1"></a>group[<span class="st">"links/8/s"</span>]</span></code></pre></div><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></div>
 <div class="cell-output cell-output-display" data-execution_count="1">
 <pre><code>📂
 ├─ 🔢 1: 4 Int64  🏷️ name =&gt; "a",