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1303 | 1303 | "href": "index.html#usage", |
1304 | 1304 | "title": "MEDYAN.jl", |
1305 | 1305 | "section": "Usage", |
1306 | | - "text": "Usage\nFirst install and run Julia https://julialang.org/downloads/\nNext download or clone this repository.\nFinally, to use MEDYAN.jl, in Julia run:\nusing Pkg; pkg\"dev <path to repo>\"\nWhere <path to repo> should be replaced with a local or absolute path to the repo.\n\nTutorials\nReference" |
| 1306 | + "text": "Usage\nFirst install and run Julia https://julialang.org/downloads/\nNext download or clone this repository.\nFinally, to use MEDYAN.jl, in Julia run:\nusing Pkg; pkg\"dev <path to repo>/MEDYAN\"\nWhere <path to repo> should be replaced with a local or absolute path to the repo.\n\nTutorials\nReference" |
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1309 | 1309 | "objectID": "index.html#authors", |
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1317 | 1317 | "href": "index.html#running-tests", |
1318 | 1318 | "title": "MEDYAN.jl", |
1319 | 1319 | "section": "Running tests", |
1320 | | - "text": "Running tests\nIn shell:\ncd test\njulia --project -e 'using Pkg; Pkg.instantiate()'\njulia --project runtests.jl\nYou can also include individual test files to run just those tests." |
| 1320 | + "text": "Running tests\nIn shell:\ncd MEDYAN/test\njulia --project -e 'using Pkg; Pkg.instantiate()'\njulia --project runtests.jl\nYou can also include individual test files to run just those tests." |
1321 | 1321 | }, |
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1323 | 1323 | "objectID": "index.html#sub-packages", |
1324 | 1324 | "href": "index.html#sub-packages", |
1325 | 1325 | "title": "MEDYAN.jl", |
1326 | 1326 | "section": "Sub Packages", |
1327 | | - "text": "Sub Packages\nThere are a number of sub packages found in the “lib” directory.\nFor example “lib/MEDYAN2Vtk”, can be tested using the following shell commands:\ncd lib/MEDYAN2Vtk/test\njulia --project -e 'using Pkg; Pkg.instantiate()'\njulia --project runtests.jl\nTo use “lib/MEDYAN2Vtk” package in a new environment in Julia run:\nusing Pkg; pkg\"dev <path to repo>/lib/MEDYAN2Vtk\"\nIf the sub package depends on other sub packages or depends on MEDYAN, you may have to dev multiple paths." |
| 1327 | + "text": "Sub Packages\nThere are a number of sub packages found in the root directory.\nFor example “MEDYAN2Vtk”, can be tested using the following shell commands:\ncd MEDYAN2Vtk/test\njulia --project -e 'using Pkg; Pkg.instantiate()'\njulia --project runtests.jl\nTo use “MEDYAN2Vtk” package in a new environment in Julia run:\nusing Pkg; pkg\"dev <path to repo>/MEDYAN2Vtk\"\nIf the sub package depends on other sub packages or depends on MEDYAN, you may have to dev multiple paths." |
1328 | 1328 | }, |
1329 | 1329 | { |
1330 | 1330 | "objectID": "index.html#running-notebooks", |
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1444 | 1444 | "href": "tutorials/1install.html", |
1445 | 1445 | "title": "1. Installing MEDYAN.jl", |
1446 | 1446 | "section": "", |
1447 | | - "text": "MEDYAN.jl is a julia package so first install the julia programming language.\nThis tutorial was generated using:\n\n\nJulia Version 1.11.5\nCommit 760b2e5b739 (2025-04-14 06:53 UTC)\nBuild Info:\n Official https://julialang.org/ release\nPlatform Info:\n OS: Linux (x86_64-linux-gnu)\n CPU: 16 × Intel(R) Core(TM) i7-10700KF CPU @ 3.80GHz\n WORD_SIZE: 64\n LLVM: libLLVM-16.0.6 (ORCJIT, skylake)\nThreads: 1 default, 0 interactive, 1 GC (on 16 virtual cores)\nEnvironment:\n LD_LIBRARY_PATH = /home/gh-actions1/actions-runner6/_work/_tool/julia/1.11.5/x64/bin/../lib/julia:/home/gh-actions1/actions-runner6/_work/_tool/julia/1.11.5/x64/bin/../lib\n JULIA_PROJECT = @.\n JULIA_LOAD_PATH = @:@stdlib\n\n\nThe tutorials should work on newer versions of julia, and on MacOS and Windows, please create an issue if you have a problem or question.\nJulia can be installed with juliaup.\nYou can also download julia here.\nDo not install julia using apt install julia or module load julia, as these don’t have a recent version of julia.\nAfter installing julia, open the REPL with the julia command in terminal.\n\n\n\nDownload the exact julia environment used to generate the tutorials.\nClick to Download\nNext extract this zip file and cd into the extracted directory.\nNow run\njulia --project -e 'import Pkg; Pkg.instantiate()'\nTo start the julia REPL in the correct environment to run the tutorials, use:\njulia --project\nFrom inside the medyan-tutorial directory.\nYou can also save julia files in this directory and use the VSCode julia extension to set the environment, and run code blocks, if you prefer that over the REPL.\nhttps://code.visualstudio.com/docs/languages/julia\n\n\n\nThese tests may take a few minutes to run.\njulia lib/MEDYAN/test/install-deps.jl\njulia --project=lib/MEDYAN/test lib/MEDYAN/test/runtests.jl\nIf you have any errors or failing tests create an issue", |
| 1447 | + "text": "MEDYAN.jl is a julia package so first install the julia programming language.\nThis tutorial was generated using:\n\n\nJulia Version 1.11.5\nCommit 760b2e5b739 (2025-04-14 06:53 UTC)\nBuild Info:\n Official https://julialang.org/ release\nPlatform Info:\n OS: Linux (x86_64-linux-gnu)\n CPU: 16 × Intel(R) Core(TM) i7-10700KF CPU @ 3.80GHz\n WORD_SIZE: 64\n LLVM: libLLVM-16.0.6 (ORCJIT, skylake)\nThreads: 1 default, 0 interactive, 1 GC (on 16 virtual cores)\nEnvironment:\n LD_LIBRARY_PATH = /home/gh-actions1/actions-runner4/_work/_tool/julia/1.11.5/x64/bin/../lib/julia:/home/gh-actions1/actions-runner4/_work/_tool/julia/1.11.5/x64/bin/../lib\n JULIA_PROJECT = @.\n JULIA_LOAD_PATH = @:@stdlib\n\n\nThe tutorials should work on newer versions of julia, and on MacOS and Windows, please create an issue if you have a problem or question.\nJulia can be installed with juliaup.\nYou can also download julia here.\nDo not install julia using apt install julia or module load julia, as these don’t have a recent version of julia.\nAfter installing julia, open the REPL with the julia command in terminal.\n\n\n\nDownload the exact julia environment used to generate the tutorials.\nClick to Download\nNext extract this zip file and cd into the extracted directory.\nNow run\njulia --project -e 'import Pkg; Pkg.instantiate()'\nTo start the julia REPL in the correct environment to run the tutorials, use:\njulia --project\nFrom inside the medyan-tutorial directory.\nYou can also save julia files in this directory and use the VSCode julia extension to set the environment, and run code blocks, if you prefer that over the REPL.\nhttps://code.visualstudio.com/docs/languages/julia\n\n\n\nThese tests may take a few minutes to run.\njulia lib/MEDYAN/test/install-deps.jl\njulia --project=lib/MEDYAN/test lib/MEDYAN/test/runtests.jl\nIf you have any errors or failing tests create an issue", |
1448 | 1448 | "crumbs": [ |
1449 | 1449 | "Tutorials", |
1450 | 1450 | "1. Installing MEDYAN.jl" |
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1455 | 1455 | "href": "tutorials/1install.html#install-julia", |
1456 | 1456 | "title": "1. Installing MEDYAN.jl", |
1457 | 1457 | "section": "", |
1458 | | - "text": "MEDYAN.jl is a julia package so first install the julia programming language.\nThis tutorial was generated using:\n\n\nJulia Version 1.11.5\nCommit 760b2e5b739 (2025-04-14 06:53 UTC)\nBuild Info:\n Official https://julialang.org/ release\nPlatform Info:\n OS: Linux (x86_64-linux-gnu)\n CPU: 16 × Intel(R) Core(TM) i7-10700KF CPU @ 3.80GHz\n WORD_SIZE: 64\n LLVM: libLLVM-16.0.6 (ORCJIT, skylake)\nThreads: 1 default, 0 interactive, 1 GC (on 16 virtual cores)\nEnvironment:\n LD_LIBRARY_PATH = /home/gh-actions1/actions-runner6/_work/_tool/julia/1.11.5/x64/bin/../lib/julia:/home/gh-actions1/actions-runner6/_work/_tool/julia/1.11.5/x64/bin/../lib\n JULIA_PROJECT = @.\n JULIA_LOAD_PATH = @:@stdlib\n\n\nThe tutorials should work on newer versions of julia, and on MacOS and Windows, please create an issue if you have a problem or question.\nJulia can be installed with juliaup.\nYou can also download julia here.\nDo not install julia using apt install julia or module load julia, as these don’t have a recent version of julia.\nAfter installing julia, open the REPL with the julia command in terminal.", |
| 1458 | + "text": "MEDYAN.jl is a julia package so first install the julia programming language.\nThis tutorial was generated using:\n\n\nJulia Version 1.11.5\nCommit 760b2e5b739 (2025-04-14 06:53 UTC)\nBuild Info:\n Official https://julialang.org/ release\nPlatform Info:\n OS: Linux (x86_64-linux-gnu)\n CPU: 16 × Intel(R) Core(TM) i7-10700KF CPU @ 3.80GHz\n WORD_SIZE: 64\n LLVM: libLLVM-16.0.6 (ORCJIT, skylake)\nThreads: 1 default, 0 interactive, 1 GC (on 16 virtual cores)\nEnvironment:\n LD_LIBRARY_PATH = /home/gh-actions1/actions-runner4/_work/_tool/julia/1.11.5/x64/bin/../lib/julia:/home/gh-actions1/actions-runner4/_work/_tool/julia/1.11.5/x64/bin/../lib\n JULIA_PROJECT = @.\n JULIA_LOAD_PATH = @:@stdlib\n\n\nThe tutorials should work on newer versions of julia, and on MacOS and Windows, please create an issue if you have a problem or question.\nJulia can be installed with juliaup.\nYou can also download julia here.\nDo not install julia using apt install julia or module load julia, as these don’t have a recent version of julia.\nAfter installing julia, open the REPL with the julia command in terminal.", |
1459 | 1459 | "crumbs": [ |
1460 | 1460 | "Tutorials", |
1461 | 1461 | "1. Installing MEDYAN.jl" |
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