build based on 8bec8a1

Author: Documenter.jl

julia-docs/dev/docstrings.html

@@ -210,7 +210,7 @@ <h2 class="anchored" data-anchor-id="tuple-medyan.sysdef--symbol--float64--93645
 <div class="callout-body-container">
 <div class="code-copy-outer-scaffold"><div class="sourceCode" id="cb1"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="fu">add_diffusion_coeff!</span>(s<span class="op">::</span><span class="dt">SysDef</span>, name<span class="op">::</span><span class="dt">Symbol</span>, coeff<span class="op">::</span><span class="dt">Float64</span>)</span></code></pre></div><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></div>
 <p>Update the diffusion coefficient for an existing diffusing species.</p>
-<p>The species must already exist in <code>s.diffusing</code> (typically added via <a href="../docstrings/medyan.add_diffusing_species--2b8ef74f13e77b3a.html"><code>add_diffusing_species!</code></a>.</p>
+<p>The species must already exist in <code>s.diffusing</code> (typically added via <a href="../docstrings/medyan.def_diffusing_species--e07d4f4fa5062c57.html"><code>def_diffusing_species!</code></a>.</p>
 <section id="arguments" class="level1">
 <h1>Arguments</h1>
 <ul>
@@ -222,7 +222,7 @@ <h1>Arguments</h1>
 <section id="returns" class="level1">
 <h1>Returns</h1>
 <p>The modified <code>SysDef</code>.</p>
-<p>See also: <a href="../docstrings/medyan.add_diffusing_species--2b8ef74f13e77b3a.html"><code>add_diffusing_species!</code></a> to add a new species with its diffusion coefficient in one step.</p>
+<p>See also: <a href="../docstrings/medyan.def_diffusing_species--e07d4f4fa5062c57.html"><code>def_diffusing_species!</code></a> to add a new species with its diffusion coefficient in one step.</p>
 </section>
 </div>
 </div>

julia-docs/dev/docstrings/medyan.add_diffusion_coeff--a77d1ef833cfdedd.html

@@ -209,7 +209,7 @@ <h2 class="anchored" data-anchor-id="union---b2cfd89fb0d1b9c6"><code data-shortc
 </div>
 <div class="callout-body-container">
 <div class="code-copy-outer-scaffold"><div class="sourceCode" id="cb1"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="fu">AnyState</span>()</span></code></pre></div><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></div>
-<p>Singleton type used in <code>match</code> in <a href="../docstrings/medyan.add_fila_reaction--7e12bff309431e2d.html"><code>add_fila_reaction!</code></a> and <a href="../docstrings/medyan.add_fila_tip_reaction--015bae70ff11d905.html"><code>add_fila_tip_reaction!</code></a> to match any <code>MonomerState</code>.</p>
+<p>Singleton type used in <code>match</code> in <a href="../docstrings/medyan.def_fila_reaction--070b0fa01eaea608.html"><code>def_fila_reaction!</code></a> and <a href="../docstrings/medyan.def_fila_tip_reaction--488aa3a14ff39688.html"><code>def_fila_tip_reaction!</code></a> to match any <code>MonomerState</code>.</p>
 <p>Use the exported constant <a href="../docstrings/medyan.anystate-5e989313a9ef75d3.html"><code>anystate</code></a> instead of constructing directly.</p>
 </div>
 </div>

julia-docs/dev/docstrings/medyan.anystate-1965db924963e911.html

@@ -209,7 +209,7 @@ <h2 class="anchored" data-anchor-id="union---b2cfd89fb0d1b9c6"><code data-shortc
 </div>
 <div class="callout-body-container">
 <div class="code-copy-outer-scaffold"><div class="sourceCode" id="cb1"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="kw">const</span> anystate <span class="op">=</span> <span class="fu">AnyState</span>()</span></code></pre></div><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></div>
-<p>A special value in <code>match</code> in <a href="../docstrings/medyan.add_fila_reaction--7e12bff309431e2d.html"><code>add_fila_reaction!</code></a> and <a href="../docstrings/medyan.add_fila_tip_reaction--015bae70ff11d905.html"><code>add_fila_tip_reaction!</code></a> to match any <code>MonomerState</code>.</p>
+<p>A special value in <code>match</code> in <a href="../docstrings/medyan.def_fila_reaction--070b0fa01eaea608.html"><code>def_fila_reaction!</code></a> and <a href="../docstrings/medyan.def_fila_tip_reaction--488aa3a14ff39688.html"><code>def_fila_tip_reaction!</code></a> to match any <code>MonomerState</code>.</p>
 </div>
 </div>
 </div>

julia-docs/dev/docstrings/medyan.anystate-5e989313a9ef75d3.html

@@ -7,7 +7,7 @@
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
 
-<title>medyan.add_diffusing_species--2b8ef74f13e77b3a – MEDYAN.jl</title>
+<title>medyan.def_diffusing_species--e07d4f4fa5062c57 – MEDYAN.jl</title>
 <style>
 code{white-space: pre-wrap;}
 span.smallcaps{font-variant: small-caps;}
@@ -185,21 +185,21 @@
     <h2 id="toc-title">On this page</h2>
 
   <ul>
-  <li><a href="#medyan.add_diffusing_species" id="toc-medyan.add_diffusing_species" class="nav-link active" data-scroll-target="#medyan.add_diffusing_species"><code>MEDYAN.add_diffusing_species!</code></a>
+  <li><a href="#medyan.def_diffusing_species" id="toc-medyan.def_diffusing_species" class="nav-link active" data-scroll-target="#medyan.def_diffusing_species"><code>MEDYAN.def_diffusing_species!</code></a>
   <ul class="collapse">
   <li><a href="#tuple-medyan.sysdef--symbol--772937de98b04e8b" id="toc-tuple-medyan.sysdef--symbol--772937de98b04e8b" class="nav-link" data-scroll-target="#tuple-medyan.sysdef--symbol--772937de98b04e8b"><code data-shortcodes="false">Tuple{MEDYAN.SysDef, Symbol}</code></a></li>
   </ul></li>
   </ul>
-<div class="toc-actions"><ul><li><a href="https://github.com/medyan-dev/MEDYAN.jl/edit/master/quartodocs/docstrings/medyan.add_diffusing_species--2b8ef74f13e77b3a.qmd" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/medyan-dev/MEDYAN.jl/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></nav>
+<div class="toc-actions"><ul><li><a href="https://github.com/medyan-dev/MEDYAN.jl/edit/master/quartodocs/docstrings/medyan.def_diffusing_species--e07d4f4fa5062c57.qmd" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/medyan-dev/MEDYAN.jl/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></nav>
     </div>
 <!-- main -->
 <main class="content" id="quarto-document-content"><header id="title-block-header" class="quarto-title-block"></header>
 
 
 
 
-<section id="medyan.add_diffusing_species" class="level1">
-<h1><code>MEDYAN.add_diffusing_species!</code></h1>
+<section id="medyan.def_diffusing_species" class="level1">
+<h1><code>MEDYAN.def_diffusing_species!</code></h1>
 <section id="tuple-medyan.sysdef--symbol--772937de98b04e8b" class="level2">
 <h2 class="anchored" data-anchor-id="tuple-medyan.sysdef--symbol--772937de98b04e8b"><code data-shortcodes="false">Tuple{MEDYAN.SysDef, Symbol}</code></h2>
 <div class="callout callout-style-simple callout-note no-icon">
@@ -208,7 +208,7 @@ <h2 class="anchored" data-anchor-id="tuple-medyan.sysdef--symbol--772937de98b04e
 <i class="callout-icon no-icon"></i>
 </div>
 <div class="callout-body-container">
-<div class="code-copy-outer-scaffold"><div class="sourceCode" id="cb1"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="fu">add_diffusing_species!</span>(s<span class="op">::</span><span class="dt">SysDef</span>, name<span class="op">::</span><span class="dt">Symbol</span>; coeff<span class="op">::</span><span class="dt">Float64</span>)</span></code></pre></div><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></div>
+<div class="code-copy-outer-scaffold"><div class="sourceCode" id="cb1"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="fu">def_diffusing_species!</span>(s<span class="op">::</span><span class="dt">SysDef</span>, name<span class="op">::</span><span class="dt">Symbol</span>; coeff<span class="op">::</span><span class="dt">Float64</span>)</span></code></pre></div><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></div>
 <p>Dynamically add a new diffusing species to the system definition.</p>
 <section id="arguments" class="level1">
 <h1>Arguments</h1>
@@ -642,4 +642,4 @@ <h1>Throws</h1>
 
 
 
-<footer class="footer"><div class="nav-footer"><div class="nav-footer-center"><div class="toc-actions d-sm-block d-md-none"><ul><li><a href="https://github.com/medyan-dev/MEDYAN.jl/edit/master/quartodocs/docstrings/medyan.add_diffusing_species--2b8ef74f13e77b3a.qmd" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/medyan-dev/MEDYAN.jl/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></div></div></footer></body></html>
+<footer class="footer"><div class="nav-footer"><div class="nav-footer-center"><div class="toc-actions d-sm-block d-md-none"><ul><li><a href="https://github.com/medyan-dev/MEDYAN.jl/edit/master/quartodocs/docstrings/medyan.def_diffusing_species--e07d4f4fa5062c57.qmd" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/medyan-dev/MEDYAN.jl/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></div></div></footer></body></html>