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Kernel crashed via running score_pairwise_consistency in ex4_bunny.ipynb #23

@ZhangzrJerry

Description

@ZhangzrJerry

Environment:

  • OS: Ubuntu 22.04
  • Python: 3.12

Crashed Code:

clipper.score_pairwise_consistency(D1, D2, A)

Log:

19:57:52.575 [error] Disposing session as kernel process died ExitCode: undefined, Reason: 
19:58:04.018 [error] Error in notebook cell execution Error: The kernel 'clipper (Python -1.-1.-1)' died. Click [here](https://aka.ms/vscodeJupyterKernelCrash) for more info. View Jupyter [log](command:jupyter.viewOutput) for further details.
    > Kernel Id = .jvsc74a57bd0645d086c400b73fe9f9478242c6edc9fa021f5930fab33f811c0a6fa2312651b.~/miniconda3/envs/clipper/python.~/miniconda3/envs/clipper/python.-m#ipykernel_launcher
    > Interpreter Id = ~/miniconda3/envs/clipper/bin/python
    > at Function.verifyKernelState (~/.vscode/extensions/ms-toolsai.jupyter-2025.4.1-linux-x64/dist/extension.node.js:301:81121)
    > originalException = undefined
19:58:04.018 [error] Error in execution (get message for cell) Error: The kernel 'clipper (Python -1.-1.-1)' died. Click [here](https://aka.ms/vscodeJupyterKernelCrash) for more info. View Jupyter [log](command:jupyter.viewOutput) for further details.
    > Kernel Id = .jvsc74a57bd0645d086c400b73fe9f9478242c6edc9fa021f5930fab33f811c0a6fa2312651b.~/miniconda3/envs/clipper/python.~/miniconda3/envs/clipper/python.-m#ipykernel_launcher
    > Interpreter Id = ~/miniconda3/envs/clipper/bin/python
    > at Function.verifyKernelState (~/.vscode/extensions/ms-toolsai.jupyter-2025.4.1-linux-x64/dist/extension.node.js:301:81121)
    > originalException = undefined

Env:

# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                        main  
_openmp_mutex             5.1                       1_gnu  
addict                    2.4.0                    pypi_0    pypi
asttokens                 3.0.0              pyhd8ed1ab_1    conda-forge
attrs                     25.3.0                   pypi_0    pypi
blinker                   1.9.0                    pypi_0    pypi
bzip2                     1.0.8                h4bc722e_7    conda-forge
ca-certificates           2025.4.26            hbd8a1cb_0    conda-forge
certifi                   2025.4.26                pypi_0    pypi
charset-normalizer        3.4.2                    pypi_0    pypi
click                     8.2.1                    pypi_0    pypi
clipperpy                 0.2.4                    pypi_0    pypi
comm                      0.2.2              pyhd8ed1ab_1    conda-forge
configargparse            1.7.1                    pypi_0    pypi
contourpy                 1.3.2                    pypi_0    pypi
cycler                    0.12.1                   pypi_0    pypi
dash                      3.0.4                    pypi_0    pypi
debugpy                   1.8.14          py312h2ec8cdc_0    conda-forge
decorator                 5.2.1              pyhd8ed1ab_0    conda-forge
exceptiongroup            1.3.0              pyhd8ed1ab_0    conda-forge
executing                 2.2.0              pyhd8ed1ab_0    conda-forge
expat                     2.7.0                h5888daf_0    conda-forge
fastjsonschema            2.21.1                   pypi_0    pypi
flask                     3.0.3                    pypi_0    pypi
fonttools                 4.58.0                   pypi_0    pypi
idna                      3.10                     pypi_0    pypi
importlib-metadata        8.7.0              pyhe01879c_1    conda-forge
ipykernel                 6.29.5             pyh3099207_0    conda-forge
ipython                   9.2.0              pyhfb0248b_0    conda-forge
ipython_pygments_lexers   1.1.1              pyhd8ed1ab_0    conda-forge
ipywidgets                8.1.7                    pypi_0    pypi
itsdangerous              2.2.0                    pypi_0    pypi
jedi                      0.19.2             pyhd8ed1ab_1    conda-forge
jinja2                    3.1.6                    pypi_0    pypi
joblib                    1.5.1                    pypi_0    pypi
jsonschema                4.24.0                   pypi_0    pypi
jsonschema-specifications 2025.4.1                 pypi_0    pypi
jupyter_client            8.6.3              pyhd8ed1ab_1    conda-forge
jupyter_core              5.8.1              pyh31011fe_0    conda-forge
jupyterlab-widgets        3.0.15                   pypi_0    pypi
keyutils                  1.6.1                h166bdaf_0    conda-forge
kiwisolver                1.4.8                    pypi_0    pypi
krb5                      1.21.3               h659f571_0    conda-forge
ld_impl_linux-64          2.43                 h712a8e2_4    conda-forge
libedit                   3.1.20250104    pl5321h7949ede_0    conda-forge
libexpat                  2.7.0                h5888daf_0    conda-forge
libffi                    3.4.6                h2dba641_1    conda-forge
libgcc                    15.1.0               h767d61c_2    conda-forge
libgcc-ng                 15.1.0               h69a702a_2    conda-forge
libgomp                   15.1.0               h767d61c_2    conda-forge
liblzma                   5.8.1                hb9d3cd8_1    conda-forge
liblzma-devel             5.8.1                hb9d3cd8_1    conda-forge
libnsl                    2.0.1                hd590300_0    conda-forge
libsodium                 1.0.20               h4ab18f5_0    conda-forge
libsqlite                 3.49.2               hee588c1_0    conda-forge
libstdcxx                 15.1.0               h8f9b012_2    conda-forge
libstdcxx-ng              15.1.0               h4852527_2    conda-forge
libuuid                   2.38.1               h0b41bf4_0    conda-forge
libxcrypt                 4.4.36               hd590300_1    conda-forge
libzlib                   1.3.1                hb9d3cd8_2    conda-forge
markupsafe                3.0.2                    pypi_0    pypi
matplotlib                3.10.3                   pypi_0    pypi
matplotlib-inline         0.1.7              pyhd8ed1ab_1    conda-forge
narwhals                  1.41.0                   pypi_0    pypi
nbformat                  5.10.4                   pypi_0    pypi
ncurses                   6.5                  h2d0b736_3    conda-forge
nest-asyncio              1.6.0              pyhd8ed1ab_1    conda-forge
numpy                     2.2.6                    pypi_0    pypi
open3d                    0.19.0                   pypi_0    pypi
openssl                   3.5.0                h7b32b05_1    conda-forge
packaging                 25.0               pyh29332c3_1    conda-forge
pandas                    2.2.3                    pypi_0    pypi
parso                     0.8.4              pyhd8ed1ab_1    conda-forge
pexpect                   4.9.0              pyhd8ed1ab_1    conda-forge
pickleshare               0.7.5           pyhd8ed1ab_1004    conda-forge
pillow                    11.2.1                   pypi_0    pypi
pip                       25.1.1             pyh8b19718_0    conda-forge
platformdirs              4.3.8              pyhe01879c_0    conda-forge
plotly                    6.1.2                    pypi_0    pypi
prompt-toolkit            3.0.51             pyha770c72_0    conda-forge
psutil                    7.0.0           py312h66e93f0_0    conda-forge
ptyprocess                0.7.0              pyhd8ed1ab_1    conda-forge
pure_eval                 0.2.3              pyhd8ed1ab_1    conda-forge
pygments                  2.19.1             pyhd8ed1ab_0    conda-forge
pyparsing                 3.2.3                    pypi_0    pypi
pyquaternion              0.9.9                    pypi_0    pypi
python                    3.12.10         h9e4cc4f_0_cpython    conda-forge
python-dateutil           2.9.0.post0        pyhff2d567_1    conda-forge
python_abi                3.12                    7_cp312    conda-forge
pytz                      2025.2                   pypi_0    pypi
pyyaml                    6.0.2                    pypi_0    pypi
pyzmq                     26.4.0          py312hbf22597_0    conda-forge
readline                  8.2                  h8c095d6_2    conda-forge
referencing               0.36.2                   pypi_0    pypi
requests                  2.32.3                   pypi_0    pypi
retrying                  1.3.4                    pypi_0    pypi
rpds-py                   0.25.1                   pypi_0    pypi
scikit-learn              1.6.1                    pypi_0    pypi
scipy                     1.15.3                   pypi_0    pypi
setuptools                80.8.0             pyhff2d567_0    conda-forge
six                       1.17.0             pyhd8ed1ab_0    conda-forge
sqlite                    3.49.2               h9eae976_0    conda-forge
stack_data                0.6.3              pyhd8ed1ab_1    conda-forge
threadpoolctl             3.6.0                    pypi_0    pypi
tk                        8.6.13          noxft_hd72426e_102    conda-forge
tornado                   6.5.1           py312h66e93f0_0    conda-forge
tqdm                      4.67.1                   pypi_0    pypi
traitlets                 5.14.3             pyhd8ed1ab_1    conda-forge
typing_extensions         4.13.2             pyh29332c3_0    conda-forge
tzdata                    2025.2                   pypi_0    pypi
urllib3                   2.4.0                    pypi_0    pypi
wcwidth                   0.2.13             pyhd8ed1ab_1    conda-forge
werkzeug                  3.0.6                    pypi_0    pypi
wheel                     0.45.1             pyhd8ed1ab_1    conda-forge
widgetsnbextension        4.0.14                   pypi_0    pypi
xz                        5.8.1                hbcc6ac9_1    conda-forge
xz-gpl-tools              5.8.1                hbcc6ac9_1    conda-forge
xz-tools                  5.8.1                hb9d3cd8_1    conda-forge
zeromq                    4.3.5                h3b0a872_7    conda-forge
zipp                      3.22.0             pyhd8ed1ab_0    conda-forge
zlib                      1.3.1                hb9d3cd8_2    conda-forge

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