From d93de8058ceaecad35bc27d4cbb27acda7e17234 Mon Sep 17 00:00:00 2001
From: scap3yvt <149599669+scap3yvt@users.noreply.github.com>
Date: Tue, 3 Jun 2025 17:53:50 -0400
Subject: [PATCH 1/3] fix path

---
 GANDLF/metrics/segmentation_panoptica.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/GANDLF/metrics/segmentation_panoptica.py b/GANDLF/metrics/segmentation_panoptica.py
index d62342b73..7a9645a1a 100644
--- a/GANDLF/metrics/segmentation_panoptica.py
+++ b/GANDLF/metrics/segmentation_panoptica.py
@@ -22,7 +22,7 @@ def generate_instance_segmentation(
 
     cwd = Path(__file__).parent.absolute()
     panoptica_config_path = (
-        cwd / "panoptica_config_path.yaml"
+        cwd / "panoptica_config_brats.yaml"
         if panoptica_config_path is None
         else panoptica_config_path
     )

From 2fa530524720ed7b22c1d74fb816c1ea1cb153c0 Mon Sep 17 00:00:00 2001
From: scap3yvt <149599669+scap3yvt@users.noreply.github.com>
Date: Tue, 3 Jun 2025 18:03:07 -0400
Subject: [PATCH 2/3] disable cosign installation

---
 .github/workflows/docker-image.yml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/docker-image.yml b/.github/workflows/docker-image.yml
index d872c57f8..2dd340331 100644
--- a/.github/workflows/docker-image.yml
+++ b/.github/workflows/docker-image.yml
@@ -55,10 +55,10 @@ jobs:
     # Below steps are for GitHub Packages integration, metadata and signing
     # See https://github.com/mlcommons/GaNDLF/new/master?filename=.github%2Fworkflows%2Fdocker-publish.yml&workflow_template=docker-publish
     
-    # Install the cosign tool except on PR
-    # https://github.com/sigstore/cosign-installer
-    - name: Install cosign
-      uses: sigstore/cosign-installer@v3.2.0
+    # # Install the cosign tool except on PR
+    # # https://github.com/sigstore/cosign-installer
+    # - name: Install cosign
+    #   uses: sigstore/cosign-installer@v3.2.0
         
     - name: Log into GitHub Packages registry (ghcr.io)
       if: github.event_name != 'pull_request'

From 95d2e9e15b5b00b8561972e21b832d86a69f6646 Mon Sep 17 00:00:00 2001
From: scap3yvt <149599669+scap3yvt@users.noreply.github.com>
Date: Tue, 3 Jun 2025 18:23:26 -0400
Subject: [PATCH 3/3] trying the last version of click that worked

---
 setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/setup.py b/setup.py
index 06158cec5..94f404699 100644
--- a/setup.py
+++ b/setup.py
@@ -78,7 +78,7 @@
     "twine",
     "keyring",
     "monai==1.4.0",
-    "click>=8.0.0",
+    "click==8.1.8",
     "deprecated",
     "packaging==24.0",
     "typer==0.9.0",