Speed up notch filter spectrum fit #11807
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| name: 'Tests' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }} | |
| cancel-in-progress: true | |
| on: # yamllint disable-line rule:truthy | |
| push: | |
| branches: ["main", "maint/*"] | |
| pull_request: | |
| branches: ["main", "maint/*"] | |
| # adapted from spyder-ide/spyder | |
| workflow_dispatch: | |
| inputs: | |
| ssh: | |
| description: 'Enable ssh debugging' | |
| required: false | |
| default: false | |
| type: boolean | |
| permissions: | |
| contents: read | |
| jobs: | |
| bandit: | |
| name: Bandit | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: davidslusser/actions_python_bandit@v1.0.1 | |
| with: | |
| src: "mne" | |
| options: "-c pyproject.toml -ll -r" | |
| pip_install_command: "pip install bandit[toml]" | |
| pytest: | |
| name: '${{ matrix.os }} / ${{ matrix.kind }} / ${{ matrix.python }}' | |
| # macOS spawns children and runs slowtests, so it needs a bit more headroom | |
| timeout-minutes: ${{ startsWith(matrix.os, 'macos') && 40 || 30 }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| env: | |
| PYTHON_VERSION: '${{ matrix.python }}' # used by github_actions_env_vars.sh | |
| PYTHONUNBUFFERED: '1' | |
| MNE_CI_KIND: '${{ matrix.kind }}' | |
| CI_OS_NAME: '${{ matrix.os }}' | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| python: '3.13' | |
| kind: pip | |
| - os: ubuntu-latest | |
| python: '3.14' | |
| kind: pip-pre | |
| - os: ubuntu-latest | |
| python: '3.13' | |
| kind: conda | |
| - os: macos-latest # arm64 | |
| python: '3.14' | |
| kind: pip | |
| - os: macos-15-intel # Intel | |
| python: '3.13' | |
| kind: pip | |
| - os: ubuntu-latest | |
| python: '3.12' | |
| kind: minimal | |
| - os: ubuntu-22.04 | |
| python: '3.10' | |
| kind: old | |
| - os: ubuntu-latest | |
| python: '3.14t' # free-threaded | |
| kind: pip-ft | |
| steps: | |
| - uses: actions/checkout@v7.0.1 | |
| with: | |
| fetch-depth: 0 | |
| persist-credentials: false | |
| - name: Get commit message | |
| run: echo "COMMIT_MESSAGE=$(git show -s --format=%s ${{ github.event.pull_request.head.sha || github.sha }})" | tee -a ${GITHUB_ENV} | |
| - name: Triage SSH | |
| run: | | |
| if [[ "${{ inputs.ssh }}" == "true" ]] || [[ "$COMMIT_MESSAGE" == *"[actions ssh]"* ]]; then | |
| echo "ENABLE_SSH=true" | tee -a $GITHUB_ENV | |
| else | |
| echo "ENABLE_SSH=false" | tee -a $GITHUB_ENV | |
| fi | |
| - name: Setup Remote SSH Connection | |
| if: env.ENABLE_SSH == 'true' | |
| uses: Warpbuilds/action-debugger@v1.3 | |
| timeout-minutes: 80 | |
| with: | |
| detached: true | |
| - run: ./tools/github_actions_env_vars.sh | |
| # Xvfb/OpenGL | |
| - uses: pyvista/setup-headless-display-action@v4 | |
| with: | |
| qt: true | |
| pyvista: false | |
| wm: false | |
| # Python (if pip) | |
| - uses: actions/setup-python@v7.0.0 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| if: startswith(matrix.kind, 'pip') || matrix.kind == 'minimal' | |
| id: setup-python | |
| # Workaround macOS path behavior with login shells (which puts system Python first) | |
| - run: echo "export PATH=\"$(dirname ${{ steps.setup-python.outputs.python-path }}):$PATH\"" | tee -a ~/.bash_profile # zizmor: ignore[template-injection] | |
| if: startswith(matrix.kind, 'pip') && startswith(matrix.os, 'macos') | |
| # Python (if conda) | |
| - uses: mamba-org/setup-micromamba@v3 | |
| with: | |
| environment-file: ${{ env.CONDA_ENV }} | |
| environment-name: mne | |
| log-level: 'info' | |
| create-args: >- | |
| python=${{ matrix.python }} | |
| -v | |
| if: matrix.kind == 'conda' | |
| timeout-minutes: 20 | |
| # Python (if old) | |
| - uses: astral-sh/setup-uv@v8.3.2 | |
| with: | |
| version: ">=0.9" | |
| activate-environment: true | |
| cache-dependency-glob: | | |
| **/pylock.ci-old.toml | |
| python-version: ${{ matrix.python }} | |
| if: matrix.kind == 'old' | |
| - run: bash ./tools/github_actions_verify_python.sh "${{ matrix.python }}" | |
| - run: bash ./tools/github_actions_dependencies.sh | |
| timeout-minutes: 10 | |
| - run: python ./tools/github_actions_check_old_env.py | |
| if: matrix.kind == 'old' | |
| # Minimal commands on Linux (macOS stalls) | |
| - uses: actions/cache@v6.1.0 | |
| with: | |
| key: minimal-commands-1 | |
| path: ~/minimal_cmds | |
| if: startswith(matrix.os, 'ubuntu') && matrix.kind != 'minimal' && matrix.kind != 'old' && matrix.kind != 'pip-ft' | |
| - run: bash ./tools/get_minimal_commands.sh | |
| if: startswith(matrix.os, 'ubuntu') && matrix.kind != 'minimal' && matrix.kind != 'old' && matrix.kind != 'pip-ft' | |
| - run: bash ./tools/github_actions_infos.sh | |
| # Check Qt | |
| - run: bash ./tools/check_qt_import.sh $MNE_QT_BACKEND | |
| if: env.MNE_QT_BACKEND != '' | |
| - name: Run tests with no testing data | |
| run: MNE_SKIP_TESTING_DATASET_TESTS=true pytest -m "not (ultraslowtest or pgtest)" -n "$PYTEST_XDIST_N" --dist loadscope --timeout=120 --timeout-method=thread -o faulthandler_timeout=110 $COV_ARGS --tb=short -vv -rfE mne/ | |
| if: matrix.kind == 'minimal' | |
| - run: ./tools/get_testing_version.sh | |
| - uses: actions/cache@v6.1.0 | |
| with: | |
| key: ${{ env.TESTING_VERSION }} | |
| path: ~/mne_data | |
| - run: bash ./tools/github_actions_download.sh | |
| - run: bash ./tools/github_actions_test.sh # for some reason on macOS we need to run "bash X" in order for a failed test run to show up | |
| - uses: codecov/codecov-action@v7.0.0 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| # COV_ARGS is empty on jobs where we don't measure coverage (Python < 3.14) | |
| if: (success() || failure()) && env.COV_ARGS != '' |