FIX: Cleaner

Author: larsoner

mne/utils/config.py

@@ -839,6 +839,8 @@ def sys_info(
         "edfio",
         "mffpy",
         "pybv",
+        "antio",
+        "defusedxml",
         "",
     )
     if dependencies == "developer":

tools/install_pre_requirements.sh

@@ -11,13 +11,11 @@ QT_BINDING="PyQt6"
 
 # Dependencies of scientific-python-nightly-wheels are installed here so that
 # we can use strict --index-url (instead of --extra-index-url) below
-echo "PyQt6 and scientific-python-nightly-wheels dependencies"
+set -x
 python -m pip install $STD_ARGS pip setuptools packaging \
 	threadpoolctl cycler fonttools kiwisolver pyparsing pillow python-dateutil \
 	patsy pytz tzdata nibabel tqdm trx-python joblib numexpr "$QT_BINDING" \
-	py-cpuinfo blosc2 hatchling "formulaic>=1.1.0" \
-	"h5py>=3.12.1"  # TODO move h5py back to nightlies when possible
-echo "NumPy/SciPy/pandas etc."
+	py-cpuinfo blosc2 hatchling "formulaic>=1.1.0"
 python -m pip uninstall -yq numpy
 python -m pip install $STD_ARGS --only-binary ":all:" --default-timeout=60 \
 	--index-url "https://pypi.anaconda.org/scientific-python-nightly-wheels/simple" \
@@ -33,58 +31,41 @@ python -m pip install $STD_ARGS --only-binary ":all:" --default-timeout=60 \
 
 # No Numba because it forces an old NumPy version
 
-echo "pymatreader"
 pip install https://gitlab.com/obob/pymatreader/-/archive/master/pymatreader-master.zip
 
-echo "OpenMEEG"
 python -m pip install $STD_ARGS --only-binary ":all:" --extra-index-url "https://test.pypi.org/simple" "openmeeg>=2.6.0.dev4"
 
-echo "nilearn"
 python -m pip install $STD_ARGS "git+https://github.com/nilearn/nilearn"
 
-echo "VTK"
 python -m pip install $STD_ARGS --only-binary ":all:" --extra-index-url "https://wheels.vtk.org" vtk
 python -c "import vtk"
 
-echo "PyVista"
 python -m pip install $STD_ARGS "git+https://github.com/pyvista/pyvista" trame trame-vtk trame-vuetify jupyter ipyevents ipympl
 
-echo "picard"
 python -m pip install $STD_ARGS git+https://github.com/pierreablin/picard
 
-echo "pyvistaqt"
 pip install $STD_ARGS git+https://github.com/pyvista/pyvistaqt
 
-echo "imageio-ffmpeg, xlrd, mffpy"
 pip install $STD_ARGS imageio-ffmpeg xlrd mffpy traitlets pybv eeglabio defusedxml antio
 
-echo "mne-qt-browser"
 pip install $STD_ARGS git+https://github.com/mne-tools/mne-qt-browser
 
-echo "mne-bids"
 pip install $STD_ARGS git+https://github.com/mne-tools/mne-bids
 
-echo "nibabel"
 pip install $STD_ARGS git+https://github.com/nipy/nibabel
 
-echo "joblib"
 pip install $STD_ARGS git+https://github.com/joblib/joblib
 
-echo "edfio"
 # Disable protection for Azure, see
 # https://github.com/mne-tools/mne-python/pull/12609#issuecomment-2115639369
 GIT_CLONE_PROTECTION_ACTIVE=false pip install $STD_ARGS git+https://github.com/the-siesta-group/edfio
 
-echo "h5io"
 pip install $STD_ARGS git+https://github.com/h5io/h5io
 
-echo "pysnirf2"
 pip install $STD_ARGS git+https://github.com/BUNPC/pysnirf2
 
 # Make sure we're on a NumPy 2.0 variant
-echo "Checking NumPy version"
 python -c "import numpy as np; assert np.__version__[0] == '2', np.__version__"
 
 # And that Qt works
-echo "Checking Qt"
 ${SCRIPT_DIR}/check_qt_import.sh "$QT_BINDING"