Merge branch 'main' into doc-ref-channel-clarification

Author: Dpereaptkhamur-13

.github/workflows/codeql-analysis.yml

@@ -44,7 +44,7 @@ jobs:
 
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL
-      uses: github/codeql-action/init@v4
+      uses: github/codeql-action/init@v4.35.1
       with:
         languages: ${{ matrix.language }}
         # If you wish to specify custom queries, you can do so here or in a config file.
@@ -58,7 +58,7 @@ jobs:
     # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
     # If this step fails, then you should remove it and run the build manually (see below)
     - name: Autobuild
-      uses: github/codeql-action/autobuild@v4
+      uses: github/codeql-action/autobuild@v4.35.1
 
     # ℹ️ Command-line programs to run using the OS shell.
     # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
@@ -71,4 +71,4 @@ jobs:
     #   ./location_of_script_within_repo/buildscript.sh
 
     - name: Perform CodeQL Analysis
-      uses: github/codeql-action/analyze@v4
+      uses: github/codeql-action/analyze@v4.35.1

.github/workflows/spec_zero.yml

@@ -41,7 +41,7 @@ jobs:
         timeout-minutes: 10
         with:
           detached: true
-      - uses: astral-sh/setup-uv@v7
+      - uses: astral-sh/setup-uv@v8.0.0
         with:
           version: ">=0.9"
           activate-environment: true

.github/workflows/tests.yml

@@ -154,7 +154,7 @@ jobs:
         if: matrix.kind == 'conda' || matrix.kind == 'mamba'
         timeout-minutes: 20
       # Python (if old)
-      - uses: astral-sh/setup-uv@v7
+      - uses: astral-sh/setup-uv@v8.0.0
         with:
           version: ">=0.9"
           activate-environment: true

.pre-commit-config.yaml

@@ -1,7 +1,7 @@
 repos:
   # Ruff mne
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.15.10
+    rev: v0.15.11
     hooks:
       - id: ruff-check
         name: ruff lint mne

doc/install/installers.rst

@@ -17,7 +17,7 @@ Platform-specific installers
         :class-content: text-center
         :name: install-linux
 
-        .. button-link:: https://github.com/mne-tools/mne-installers/releases/download/v1.12.0-post1/MNE-Python-1.12.0_1-Linux.sh
+        .. button-link:: https://github.com/mne-tools/mne-installers/releases/download/v1.12.1/MNE-Python-1.12.1_0-Linux.sh
             :ref-type: ref
             :color: primary
             :shadow:
@@ -31,14 +31,14 @@ Platform-specific installers
 
         .. code-block:: console
 
-            $ sh ./MNE-Python-1.12.0_1-Linux.sh
+            $ sh ./MNE-Python-1.12.1_0-Linux.sh
 
 
     .. tab-item:: macOS (Intel)
         :class-content: text-center
         :name: install-macos-intel
 
-        .. button-link:: https://github.com/mne-tools/mne-installers/releases/download/v1.12.0-post1/MNE-Python-1.12.0_1-macOS_Intel.pkg
+        .. button-link:: https://github.com/mne-tools/mne-installers/releases/download/v1.12.1/MNE-Python-1.12.1_0-macOS_Intel.pkg
             :ref-type: ref
             :color: primary
             :shadow:
@@ -54,7 +54,7 @@ Platform-specific installers
         :class-content: text-center
         :name: install-macos-apple
 
-        .. button-link:: https://github.com/mne-tools/mne-installers/releases/download/v1.12.0-post1/MNE-Python-1.12.0_1-macOS_M1.pkg
+        .. button-link:: https://github.com/mne-tools/mne-installers/releases/download/v1.12.1/MNE-Python-1.12.1_0-macOS_M1.pkg
             :ref-type: ref
             :color: primary
             :shadow:
@@ -70,7 +70,7 @@ Platform-specific installers
         :class-content: text-center
         :name: install-windows
 
-        .. button-link:: https://github.com/mne-tools/mne-installers/releases/download/v1.12.0-post1/MNE-Python-1.12.0_1-Windows.exe
+        .. button-link:: https://github.com/mne-tools/mne-installers/releases/download/v1.12.1/MNE-Python-1.12.1_0-Windows.exe
             :ref-type: ref
             :color: primary
             :shadow:
@@ -164,7 +164,7 @@ To remove the MNE-Python distribution provided by our installers above:
            .. code-block:: bash
 
                $ which python
-               /home/username/mne-python/1.12.0_1/bin/python
+               /home/username/mne-python/1.12.1_0/bin/python
                $ rm -Rf /home/$USER/mne-python
                $ rm /home/$USER/.local/share/applications/mne-python-*.desktop
 
@@ -178,7 +178,7 @@ To remove the MNE-Python distribution provided by our installers above:
            .. code-block:: bash
 
                $ which python
-               /Users/username/Applications/MNE-Python/1.12.0_1/.mne-python/bin/python
+               /Users/username/Applications/MNE-Python/1.12.1_0/.mne-python/bin/python
                $ rm -Rf /Users/$USER/Applications/MNE-Python  # if user-specific
                $ rm -Rf /Applications/MNE-Python              # if system-wide
 

mne/viz/epochs.py

@@ -874,7 +874,7 @@ def plot_epochs(
         specification. Keys that do not match any annotation description in the data
         will trigger a warning. If ``None`` (default), automatic colors are used.
 
-        .. versionadded:: 1.13
+        .. versionadded:: 1.12.1
 
     Returns
     -------

mne/viz/raw.py

@@ -119,7 +119,7 @@ def plot_raw(
         specification. Keys that do not match any annotation description in the data
         will trigger a warning. If ``None`` (default), automatic colors are used.
 
-        .. versionadded:: 1.13
+        .. versionadded:: 1.12.1
     annotation_regex : str
         A regex pattern applied to each annotation's label.
         Matching labels remain visible, non-matching labels are hidden.