data-module-template/.github/workflows/template-pr-ci.yml at c0eb48f644b5e8ce2dfd8782e6efb4f5eee45f1f · modelblocks-org/data-module-template · GitHub

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name: Reusable Pull Request CI tests for modules

on:
  workflow_call:

jobs:
  build:
    name: Build
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest, windows-latest, macos-latest]
        python-version: ["3.12"]
    steps:
      - uses: actions/checkout@v4
      - name: Setup pixi
        uses: prefix-dev/setup-pixi@v0.8.3
      - name: Run integration tests
        id: tests
        run: pixi run test-integration
        continue-on-error: true
      - name: Run snakemake linting
        id: linting
        run: |
          pixi run snakemake --lint --snakefile workflow/Snakefile
          pixi run snakemake --lint --snakefile tests/integration/Snakefile
        continue-on-error: true
      - name: Save integration logs
        if: ${{ always() }}
        uses: actions/upload-artifact@v4
        with:
          name: integration-test-logs-${{ matrix.os }}
          path: tests/integration/results/integration_test/logs
          if-no-files-found: ignore
          retention-days: 30
      - name: Fail if integration or linting failed
        if: ${{ steps.tests.outcome == 'failure' || steps.linting.outcome == 'failure' }}
        run: exit 1