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2 | 2 |
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3 | 3 | {{module_description}} |
4 | 4 |
|
5 | | -## About this module |
| 5 | +<!-- Place an attractive image of module outputs here --> |
| 6 | + |
| 7 | + |
| 8 | +## About |
6 | 9 | <!-- Please do not modify this templated section --> |
7 | 10 |
|
8 | | -This is a modular `snakemake` workflow built for [Modelblocks](https://www.modelblocks.org/) data modules. |
| 11 | +This is a modular `snakemake` workflow created as part of the [Modelblocks project](https://www.modelblocks.org/). It can be imported directly into any `snakemake` workflow. |
| 12 | + |
| 13 | +For more information, please consult the Modelblocks [documentation](https://modelblocks.readthedocs.io/en/latest/), |
| 14 | +the [integration example](./tests/integration/Snakefile), |
| 15 | +and the `snakemake` [documentation](https://snakemake.readthedocs.io/en/stable/snakefiles/modularization.html). |
| 16 | + |
| 17 | +## Overview |
| 18 | +<!-- Please describe the processing stages of this module here --> |
| 19 | + |
| 20 | +Data processing steps: |
| 21 | +1. |
| 22 | +2. |
| 23 | + |
| 24 | +## Configuration |
| 25 | +<!-- Please describe how to configure this module below --> |
| 26 | + |
| 27 | +Please consult the configuration [README](./config/README.md) and the [configuration example](./config/config.yaml) for a general overview on the configuration options of this module. |
| 28 | + |
| 29 | +## Input / output structure |
| 30 | +<!-- Please describe input / output file placement below --> |
9 | 31 |
|
10 | | -This module can be imported directly into any `snakemake` workflow. |
11 | | -For more information, please consult: |
12 | | -- The Modelblocks [documentation](https://modelblocks.readthedocs.io/en/latest/). |
13 | | -- The integration example in this repository (`tests/integration/Snakefile`). |
14 | | -- The `snakemake` [documentation on modularisation](https://snakemake.readthedocs.io/en/stable/snakefiles/modularization.html). |
| 32 | +Please consult the [interface file](./INTERFACE.yaml) for more information. |
15 | 33 |
|
16 | 34 | ## Development |
17 | 35 | <!-- Please do not modify this templated section --> |
@@ -39,22 +57,7 @@ cd tests/integration/ # navigate to the integration example |
39 | 57 | snakemake --use-conda --cores 2 # run the workflow! |
40 | 58 | ``` |
41 | 59 |
|
42 | | -## Documentation |
43 | | - |
44 | | -### Overview |
45 | | -<!-- Please describe the processing stages of this module here --> |
46 | | - |
47 | | -### Configuration |
48 | | -<!-- Feel free to describe how to configure this module below --> |
49 | | - |
50 | | -Please consult the configuration [README](./config/README.md) and the [configuration example](./config/config.yaml) for a general overview on the configuration options of this module. |
51 | | - |
52 | | -### Input / output structure |
53 | | -<!-- Feel free to describe input / output file placement below --> |
54 | | - |
55 | | -Please consult the [interface file](./INTERFACE.yaml) for more information. |
56 | | - |
57 | | -### References |
| 60 | +## References |
58 | 61 | <!-- Please provide thorough referencing below --> |
59 | 62 |
|
60 | 63 | This module is based on the following research and datasets: |
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