Skip example enterely to minimise false positives in template updates (#22)

* Skip example entirely to minimise false positives in template updates, except for the `Snakefile`.

Author: irm-codebase

copier.yaml

@@ -12,6 +12,10 @@ _exclude:
     - ".DS_Store"
     - ".svn"
     # Do not add the dummy example when updating
+    - "{% if _copier_operation == 'update' -%}workflow/envs/shell.yaml{% endif %}"
+    - "{% if _copier_operation == 'update' -%}workflow/internal/config.schema.yaml{% endif %}"
+    - "{% if _copier_operation == 'update' -%}workflow/internal/settings.yaml{% endif %}"
+    - "{% if _copier_operation == 'update' -%}workflow/rules/automatic.smk{% endif %}"
     - "{% if _copier_operation == 'update' -%}workflow/rules/dummy.smk{% endif %}"
     - "{% if _copier_operation == 'update' -%}workflow/scripts/dummy_script.py{% endif %}"
 _skip_if_exists: