Merge branch 'main' into claude/issue-475-20250817-1726

Author: cliffhall

README.md

@@ -605,6 +605,7 @@ A growing set of community-developed and maintained servers demonstrates various
 - **[DesktopCommander](https://github.com/wonderwhy-er/DesktopCommanderMCP)** - Let AI edit and manage files on your computer, run terminal commands, and connect to remote servers via SSH - all powered by one of the most popular local MCP servers.
 - **[Devcontainer](https://github.com/AI-QL/mcp-devcontainers)** - An MCP server for devcontainer to generate and configure development containers directly from devcontainer configuration files.
 - **[DevDb](https://github.com/damms005/devdb-vscode?tab=readme-ov-file#mcp-configuration)** - An MCP server that runs right inside the IDE, for connecting to MySQL, Postgres, SQLite, and MSSQL databases.
+- **[DevOps AI Toolkit](https://github.com/vfarcic/dot-ai)** - AI-powered development productivity platform that enhances software development workflows through intelligent automation and AI-driven assistance.
 - **[DevOps-MCP](https://github.com/wangkanai/devops-mcp)** - Dynamic Azure DevOps MCP server with directory-based authentication switching, supporting work items, repositories, builds, pipelines, and multi-project management with local configuration files.
 - **[Dicom](https://github.com/ChristianHinge/dicom-mcp)** - An MCP server to query and retrieve medical images and for parsing and reading dicom-encapsulated documents (pdf etc.). 
 - **[Dify](https://github.com/YanxingLiu/dify-mcp-server)** - A simple implementation of an MCP server for dify workflows.
@@ -992,6 +993,7 @@ A growing set of community-developed and maintained servers demonstrates various
 - **[Prefect](https://github.com/allen-munsch/mcp-prefect)** - MCP Server for workflow orchestration and ELT/ETL with Prefect Server, and Prefect Cloud [https://www.prefect.io/] using the `prefect` python client.
 - **[Productboard](https://github.com/kenjihikmatullah/productboard-mcp)** - Integrate the Productboard API into agentic workflows via MCP.
 - **[Prometheus](https://github.com/pab1it0/prometheus-mcp-server)** - Query and analyze Prometheus - open-source monitoring system.
+- **[Prometheus (TypeScript)](https://github.com/yanmxa/prometheus-mcp-server)** - Enable AI assistants to query Prometheus using natural language with TypeScript implementation.
 - **[PubChem](https://github.com/sssjiang/pubchem_mcp_server)** - extract drug information from pubchem API.
 - **[PubMed](https://github.com/JackKuo666/PubMed-MCP-Server)** - Enable AI assistants to search, access, and analyze PubMed articles through a simple MCP interface.
 - **[Pulumi](https://github.com/dogukanakkaya/pulumi-mcp-server)** - MCP Server to Interact with Pulumi API, creates and lists Stacks

package-lock.json

@@ -169,16 +169,6 @@ export const createServer = () => {
   let subsUpdateInterval: NodeJS.Timeout | undefined;
   let stdErrUpdateInterval: NodeJS.Timeout | undefined;
 
-  // Set up update interval for subscribed resources
-  subsUpdateInterval = setInterval(() => {
-    for (const uri of subscriptions) {
-      server.notification({
-        method: "notifications/resources/updated",
-        params: { uri },
-      });
-    }
-  }, 10000);
-
   let logLevel: LoggingLevel = "debug";
   let logsUpdateInterval: NodeJS.Timeout | undefined;
   const messages = [
@@ -198,15 +188,30 @@ export const createServer = () => {
     return messageLevel < currentLevel;
   };
 
-  // Set up update interval for random log messages
-  logsUpdateInterval = setInterval(() => {
-    let message = {
-      method: "notifications/message",
-      params: messages[Math.floor(Math.random() * messages.length)],
-    };
-    if (!isMessageIgnored(message.params.level as LoggingLevel))
-      server.notification(message);
-  }, 20000);
+  // Function to start notification intervals when a client connects
+  const startNotificationIntervals = () => {
+    if (!subsUpdateInterval) {
+      subsUpdateInterval = setInterval(() => {
+        for (const uri of subscriptions) {
+          server.notification({
+            method: "notifications/resources/updated",
+            params: { uri },
+          });
+        }
+      }, 10000);
+    }
+
+    if (!logsUpdateInterval) {
+      logsUpdateInterval = setInterval(() => {
+        let message = {
+          method: "notifications/message",
+          params: messages[Math.floor(Math.random() * messages.length)],
+        };
+        if (!isMessageIgnored(message.params.level as LoggingLevel))
+          server.notification(message);
+      }, 20000);
+    }
+  };
 
 
 
@@ -874,7 +879,7 @@ export const createServer = () => {
     if (stdErrUpdateInterval) clearInterval(stdErrUpdateInterval);
   };
 
-  return { server, cleanup };
+  return { server, cleanup, startNotificationIntervals };
 };
 
 const MCP_TINY_IMAGE =

src/everything/everything.ts

@@ -10,7 +10,7 @@ const transports: Map<string, SSEServerTransport> = new Map<string, SSEServerTra
 
 app.get("/sse", async (req, res) => {
   let transport: SSEServerTransport;
-  const { server, cleanup } = createServer();
+  const { server, cleanup, startNotificationIntervals } = createServer();
 
   if (req?.query?.sessionId) {
     const sessionId = (req?.query?.sessionId as string);
@@ -25,6 +25,9 @@ app.get("/sse", async (req, res) => {
     await server.connect(transport);
     console.error("Client Connected: ", transport.sessionId);
 
+    // Start notification intervals after client connects
+    startNotificationIntervals();
+
     // Handle close of connection
     server.onclose = async () => {
       console.error("Client Disconnected: ", transport.sessionId);

src/everything/sse.ts

@@ -64,10 +64,6 @@ The server's directory access control follows this flow:
 
 ## API
 
-### Resources
-
-- `file://system`: File system operations interface
-
 ### Tools
 
 - **read_text_file**
@@ -77,6 +73,7 @@ The server's directory access control follows this flow:
     - `head` (number, optional): First N lines
     - `tail` (number, optional): Last N lines
   - Always treats the file as UTF-8 text regardless of extension
+  - Cannot specify both `head` and `tail` simultaneously
 
 - **read_media_file**
   - Read an image or audio file
@@ -123,6 +120,23 @@ The server's directory access control follows this flow:
   - List directory contents with [FILE] or [DIR] prefixes
   - Input: `path` (string)
 
+- **list_directory_with_sizes**
+  - List directory contents with [FILE] or [DIR] prefixes, including file sizes
+  - Inputs:
+    - `path` (string): Directory path to list
+    - `sortBy` (string, optional): Sort entries by "name" or "size" (default: "name")
+  - Returns detailed listing with file sizes and summary statistics
+  - Shows total files, directories, and combined size
+
+- **directory_tree**
+  - Get a recursive tree view of files and directories as a JSON structure
+  - Input: `path` (string): Starting directory path
+  - Returns JSON structure with:
+    - `name`: File/directory name
+    - `type`: "file" or "directory"
+    - `children`: Array of child entries (for directories only)
+  - Output is formatted with 2-space indentation for readability
+
 - **move_file**
   - Move or rename files and directories
   - Inputs: