flopy/.github/workflows/mf6.yml at develop · modflowpy/flopy · GitHub

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name: Modflow6 continuous integration

on:
  schedule:
    - cron: '0 8 * * *' # run at 8 AM UTC (12 am PST)
  push:
  pull_request:
    branches:
      - master
      - develop
concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true
jobs:

  test_mf6:
    name: Modflow6 FloPy tests
    runs-on: ubuntu-latest
    defaults:
      run:
        shell: bash
    steps:

    - name: Checkout flopy repo
      uses: actions/checkout@v6
      with:
        path: flopy

    - name: Checkout MODFLOW 6
      uses: actions/checkout@v6
      with:
        repository: MODFLOW-ORG/modflow6
        path: modflow6

    - name: Setup GNU Fortran
      uses: fortran-lang/setup-fortran@v1
      with:
        compiler: gcc
        version: 13

    - name: Setup pixi
      uses: prefix-dev/setup-pixi@v0.9.5
      with:
        pixi-version: v0.41.4
        manifest-path: modflow6/pixi.toml

    - name: Install dependencies
      working-directory: modflow6
      run: |
        pixi run install
        pixi run pip install coverage pytest-cov

    - name: Install FloPy
      working-directory: flopy
      run: |
        pixi run --manifest-path=../modflow6/pixi.toml pip install --no-deps -e .
        pixi run --manifest-path=../modflow6/pixi.toml python -m flopy.mf6.utils.generate_classes --dfnpath ../modflow6/doc/mf6io/mf6ivar/dfn

    - name: Build MF6
      working-directory: modflow6
      run: |
        pixi run meson setup builddir --buildtype=debugoptimized --prefix=$(pwd) --libdir=bin
        pixi run meson install -C builddir
        pixi run meson test --verbose --no-rebuild -C builddir

    - name: Build mf5to6 converter
      working-directory: modflow6/utils/mf5to6
      run: |
        pixi run meson setup builddir --prefix=$(pwd)/../../ --libdir=bin
        pixi run meson install -C builddir

    - name: Install executables
      working-directory: modflow6/autotest
      env:
        GITHUB_TOKEN: ${{ github.token }}
      run: pixi run pytest -v --durations=0 get_exes.py

    - name: Run tests
      working-directory: modflow6/autotest
      run: pixi run pytest -v --cov=flopy --cov-report=xml --cov-append --durations=0 -n auto -m "not repo and not regression"

    - name: Print coverage report before upload
      working-directory: ./modflow6/autotest
      run: pixi run coverage report

    - name: Upload coverage to Codecov
      if:
        github.repository_owner == 'modflowpy' && (github.event_name == 'push' || github.event_name == 'pull_request')
      uses: codecov/codecov-action@v6
      with:
        files: ./modflow6/autotest/coverage.xml

  test_mf6_examples:
    name: MF6 examples FloPy tests
    runs-on: ubuntu-latest
    defaults:
      run:
        shell: bash
    steps:

    - name: Checkout flopy repo
      uses: actions/checkout@v6
      with:
        path: flopy

    - name: Checkout MODFLOW 6
      uses: actions/checkout@v6
      with:
        repository: MODFLOW-ORG/modflow6
        path: modflow6

    - name: Checkout MF6 examples
      uses: actions/checkout@v6
      with:
        repository: MODFLOW-ORG/modflow6-examples
        path: modflow6-examples

    - name: Setup GNU Fortran
      uses: fortran-lang/setup-fortran@v1
      with:
        compiler: gcc
        version: 13

    - name: Setup pixi
      uses: prefix-dev/setup-pixi@v0.9.5
      with:
        pixi-version: v0.41.4
        manifest-path: modflow6/pixi.toml

    - name: Install dependencies
      working-directory: modflow6
      run: pixi run install

    - name: Install FloPy
      working-directory: flopy
      run: |
        pixi run --manifest-path=../modflow6/pixi.toml pip install --no-deps -e .
        pixi run --manifest-path=../modflow6/pixi.toml python -m flopy.mf6.utils.generate_classes --dfnpath ../modflow6/doc/mf6io/mf6ivar/dfn

    - name: Install executables
      uses: modflowpy/install-modflow-action@v1

    - name: Build and install MF6
      working-directory: modflow6
      run: |
        pixi run meson setup builddir --buildtype=debugoptimized --prefix=$(pwd) --libdir=bin
        pixi run meson install -C builddir
        pixi run meson test --verbose --no-rebuild -C builddir
        cp bin/* ~/.local/bin/modflow/

    - name: Test MF6 examples
      working-directory: modflow6-examples/autotest
      run: pixi run --manifest-path=../../modflow6/pixi.toml pytest -v -n=auto --durations=0 test_scripts.py