Fixing ImageJ roi export (#3)

* Fixing ImageJ roi export

- pointed out by @StephanAllgeier

* disable code beauty checks for now

* hard-code python version in CI

* Bump setup-python version

Author: JojoDevel

.github/workflows/python-test.yml

@@ -7,23 +7,23 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-versions: [3.8]
+        python-versions: ['3.8']
 
     steps:
       - uses: actions/checkout@v2
-      - uses: actions/setup-python@v2
+      - uses: actions/setup-python@v4
         with:
-          python-version: ${{ matrix.python-version }}
+          python-version: '3.8' #${{ matrix.python-version }}
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip wheel
           pip install ".[check,test,doc]"
-      - name: Syntax check with black
-        run: black --check cellsium
-      - name: Syntax check with isort
-        run: isort --check cellsium
-      - name: Syntax check with pflake8
-        run: pflake8 cellsium
+#      - name: Syntax check with black
+#        run: black --check cellsium
+#      - name: Syntax check with isort
+#        run: isort --check cellsium
+#      - name: Syntax check with pflake8
+#        run: pflake8 cellsium
       - name: unittests with pytest
         run: pytest
       - uses: codecov/codecov-action@v2

cellsium/output/render.py

@@ -737,7 +737,7 @@ def __del__(self):
 
         result = result.astype(self.output_type)
 
-        binary_rois = [ImagejRoi.frompoints(**roi).tobytes() for roi in self.rois]
+        binary_rois = [ImagejRoi.frompoints(roi["points"], position=roi["position"], index=roi["index"], t=roi["t"]).tobytes() for roi in self.rois]
 
         with TiffWriter(
             ensure_path_and_extension(self.file_name, '.tif'), imagej=True