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4c58b91
source docs sample
Namyalg Apr 27, 2022
663d110
removed extra files
Namyalg Apr 27, 2022
0f6aa95
source docs
Adexandria Apr 28, 2022
0ec3fe1
Merge pull request #1 from Adexandria/source-docs
Namyalg Apr 28, 2022
5c20aab
docs: cbmaggregatorlandunitdata documented
Namyalg Apr 28, 2022
3d33347
source-docs sample
Adexandria Apr 29, 2022
969681a
Merge branch 'Namyalg:source-docs' into source-docs
Adexandria Apr 29, 2022
5c8b564
Merge pull request #2 from Adexandria/source-docs
Namyalg Apr 29, 2022
aeb1706
source docs generated for cbmaggregatorlibpqxxwriter.cpp
Namyalg Apr 29, 2022
4783755
add cbmaggregatorlibpqxxwriter to index.rst, add runs-on to build-doc…
Namyalg Apr 29, 2022
e13dc34
Update build-docs.yml
Namyalg Apr 29, 2022
e5195ae
Update build-docs.yml
Namyalg Apr 29, 2022
7995ff0
Update build-docs.yml
Namyalg Apr 29, 2022
8e4639f
Update build-docs.yml
Namyalg Apr 29, 2022
b9cce0d
Add GHA to deploy to Netlify
Namyalg Apr 29, 2022
2d72cd1
Update build-docs.yml
Namyalg Apr 29, 2022
5f7ccb2
ci: add doxygen as dependency
Namyalg Apr 29, 2022
ac6538e
Merge branch 'source-docs' of https://github.com/Namyalg/moja.canada …
Namyalg Apr 29, 2022
b921dcc
add class description to cbmaggregatorlibpqxxwriter, increase timeout…
Namyalg Apr 29, 2022
770edfe
in prod: true
Namyalg Apr 29, 2022
44fc542
remove production branch
Namyalg Apr 29, 2022
e96332f
in prod: true
Namyalg Apr 29, 2022
6c58480
modify doxygen config
Namyalg Apr 29, 2022
e1e1754
added description to ln 115 method
Adexandria Apr 30, 2022
a59fbe9
source docs sample
Adexandria Apr 30, 2022
a1f31dc
Merge branch 'Namyalg:source-docs' into source-docs
Adexandria Apr 30, 2022
906621e
Fixed spacing issues
Adexandria Apr 30, 2022
bab9f40
fixed spacing issues
Adexandria Apr 30, 2022
1468e36
Merge pull request #3 from Adexandria/source-docs
Namyalg Apr 30, 2022
e517017
build source docs for cbmaggregatorpostgresqlwriter'
Namyalg Apr 30, 2022
90adde4
build source docs for cbmaggregatorpostgresqlwriter'
Namyalg Apr 30, 2022
f8a6ca2
update cbmaggregatorpostgresqlwriter.rst'
Namyalg Apr 30, 2022
8cd16d6
config only brief description display
Namyalg Apr 30, 2022
aab1d91
added description
Adexandria May 2, 2022
7c42c04
added description
Adexandria May 2, 2022
56f9a6e
source docs sample
Adexandria May 2, 2022
3e01df7
Merge branch 'source-docs' of https://github.com/Adexandria/moja.cana…
Adexandria May 2, 2022
72d9c3f
solved spacing issues
Adexandria May 2, 2022
e0c7442
added description
Adexandria May 2, 2022
031d73b
added description
Adexandria May 2, 2022
231064d
Merge pull request #4 from Adexandria/source-docs
Namyalg May 2, 2022
82d91d1
source docs for cbmaggregatorsqlitewriter
Namyalg May 2, 2022
b391230
update filename in rst index file
Namyalg May 2, 2022
af15009
update cbmaggregatorsqlitewriter.rst
Namyalg May 2, 2022
b1393cc
source docs sample
Adexandria May 3, 2022
ae14312
Merge branch 'Namyalg:source-docs' into source-docs
Adexandria May 3, 2022
8e94df7
added description
Adexandria May 3, 2022
a000f36
Merge branch 'source-docs' of https://github.com/Adexandria/moja.cana…
Adexandria May 3, 2022
c54a097
changed description
Adexandria May 3, 2022
cf102a2
Merge pull request #5 from Adexandria/source-docs
Namyalg May 3, 2022
1ff9650
source docs for cbmbuildlandunitmodule.cpp
Namyalg May 3, 2022
42cc4b1
Merge branch 'develop' into source-docs
Namyalg May 3, 2022
953e82a
added description
Adexandria May 4, 2022
134ec4b
source docs sample
Adexandria May 4, 2022
47eaab1
Merge branch 'source-docs' of https://github.com/Adexandria/moja.cana…
Adexandria May 4, 2022
002371e
Merge pull request #6 from Adexandria/source-docs
Namyalg May 4, 2022
739e8b3
source docs for cbmdecaymodule
Namyalg May 4, 2022
4a1ed98
fixed grammatical error
Adexandria May 5, 2022
9c2e5ca
source docs sample
Adexandria May 5, 2022
ca9182b
fixed grammatical error
Adexandria May 5, 2022
c37af8b
Merge pull request #7 from Adexandria/source-docs
Namyalg May 5, 2022
a1b5327
source docs for cbmdisturbanceeventmodule
Namyalg May 5, 2022
b6501db
source docs sample
Adexandria May 6, 2022
15203e9
Merge branch 'Namyalg:source-docs' into source-docs
Adexandria May 6, 2022
0abc218
Merge pull request #8 from Adexandria/source-docs
Namyalg May 6, 2022
13323cc
source docs for cbmdisturbancelistener
Namyalg May 7, 2022
1cfa7c3
source sample doc
Adexandria May 13, 2022
a183d4f
added summary
Adexandria May 13, 2022
56079a9
fix grammatical error
Adexandria May 13, 2022
0b98f9b
Merge branch 'Namyalg:source-docs' into source-docs
Adexandria May 13, 2022
87c7a80
Merge pull request #9 from Adexandria/source-docs
Namyalg May 13, 2022
28d511c
source docs for cbmflataggregatorlandunitdata
Namyalg May 14, 2022
8ac9a3e
source docs sample
Adexandria May 19, 2022
318f82d
Merge branch 'Namyalg:source-docs' into source-docs
Adexandria May 19, 2022
6538dda
Merge pull request #10 from Adexandria/source-docs
Namyalg May 19, 2022
4dd5ced
add : docs for cbmbuildlandunitmodule
Namyalg May 19, 2022
553533f
update index.rst'
Namyalg May 19, 2022
aec97ed
remove build folder
Namyalg May 19, 2022
c0a749d
remove extra files
Namyalg May 19, 2022
5960ed1
Merge branch 'moja-global:develop' into source-docs
Namyalg May 21, 2022
c1ad2d0
Update build-docs.yml
Namyalg May 21, 2022
75f3c1c
Create requirements.txt
Namyalg May 21, 2022
2997ed4
modified source sample doc
Adexandria May 25, 2022
ac7adb0
source docs format updated
Namyalg May 28, 2022
9e3853b
Update build-docs.yml
Namyalg May 28, 2022
bc49517
Update build-docs.yml
Namyalg May 28, 2022
092cc9d
Update build-docs.yml
Namyalg May 28, 2022
11b97fb
update ageclasshelper
Namyalg May 28, 2022
1410288
Merge branch 'source-docs' of https://github.com/Namyalg/moja.canada …
Namyalg May 28, 2022
71ac9a1
update ageClassHelper
Namyalg May 28, 2022
9ffe985
updated cbmbuildlandunitmodule
Adexandria May 30, 2022
23a0188
updated cbmdisturbanceeventmodule
Adexandria May 30, 2022
d53c05c
updated cbmdecaymodule
Adexandria May 30, 2022
4938917
updated cbmbuildlandunitmodule
Adexandria May 30, 2022
36432d0
updated cbmdecaymodule
Adexandria May 30, 2022
15a71c2
chore: change documentation theme to doxygen
Namyalg May 30, 2022
6e32fd5
Merge branch 'source-docs' of https://github.com/Namyalg/moja.canada …
Namyalg May 30, 2022
a90f848
Update build-docs.yml
Namyalg May 30, 2022
c205d7d
Update build-docs.yml
Namyalg May 30, 2022
7633538
update: docs for ageclasshelper
Namyalg May 31, 2022
6cfa1b8
update: docs for ageclasshelper
Namyalg May 31, 2022
fb1b5d1
update ageClassHelper
Namyalg Jun 1, 2022
d476585
update docs for cbmageindicators
Namyalg Jun 1, 2022
f1e4a90
update docs
Namyalg Jun 1, 2022
dd0253d
update docs
Namyalg Jun 3, 2022
81d2e6b
add: source docs for peatlandparameters
Namyalg Jun 3, 2022
f010313
verify AgeClassHelper
Namyalg Jun 3, 2022
a83206b
verify cbmageindicators
Namyalg Jun 3, 2022
69e99d5
add: docs for TreeSpecies
Namyalg Jun 3, 2022
4baa99f
docs for componentbiomasscarboncurve
Namyalg Jun 4, 2022
0a74904
updated source for cbmflataggregatorlandunitdata
Adexandria Jun 4, 2022
5961706
Merge branch 'source-docs' of https://github.com/Namyalg/moja.canada …
Namyalg Jun 4, 2022
3cd532c
updated
Adexandria Jun 4, 2022
95289cc
review cbmlandunitmodule
Namyalg Jun 4, 2022
cfd819e
Merge branch 'source-docs' of https://github.com/Namyalg/moja.canada …
Namyalg Jun 4, 2022
4322310
updated source docs for cbmdisturbancelistener
Adexandria Jun 4, 2022
f3ca32d
change docs_sphinx to docs
Namyalg Jun 4, 2022
ec5f55a
Merge branch 'source-docs' of https://github.com/Namyalg/moja.canada …
Namyalg Jun 4, 2022
b7175e2
review CBMAggregatorLibPQXXWriter
Namyalg Jun 4, 2022
e393df9
Update build-docs.yml
Namyalg Jun 4, 2022
52e46eb
Update build-docs.yml
Namyalg Jun 4, 2022
835ab58
Update build-docs.yml
Namyalg Jun 4, 2022
06e32f2
Update build-docs.yml
Namyalg Jun 4, 2022
5e8d042
Update build-docs.yml
Namyalg Jun 4, 2022
a8c6fc8
Update build-docs.yml
Namyalg Jun 4, 2022
189cd76
Update build-docs.yml
Namyalg Jun 4, 2022
38d11e1
Test github pages on GHA
Namyalg Jun 4, 2022
a5eb04f
Merge branch 'source-docs' of https://github.com/Namyalg/moja.canada …
Namyalg Jun 4, 2022
2d38cc0
review libpqxx and postgresql writer
Namyalg Jun 5, 2022
88501c7
review sql writer
Namyalg Jun 5, 2022
6bcedbe
review landunitdatatransform
Namyalg Jun 5, 2022
f15ab16
updated source doc for cbmlandclasstransitionmodule
Adexandria Jun 5, 2022
b8232a2
updated sourec doc for cbmlandunitdatatransform
Adexandria Jun 5, 2022
66100b2
updated
Adexandria Jun 5, 2022
4016208
review docs, update peatlandaftercbmmodule
Namyalg Jun 5, 2022
9ce340d
fix merge conflicts
Namyalg Jun 5, 2022
d5cf78b
updated
Adexandria Jun 6, 2022
8fefcf3
update README
Namyalg Jun 6, 2022
636ff79
Merge branch 'source-docs' of https://github.com/Namyalg/moja.canada …
Namyalg Jun 6, 2022
89a89c0
review CBMLandClassTransitionModule
Namyalg Jun 7, 2022
9895e3f
updated for CBMPeatlandSpinupOutput
Adexandria Jun 7, 2022
309ce05
updated CBMPeatlandSpinupOutput
Adexandria Jun 7, 2022
a7c3352
updated
Adexandria Jun 7, 2022
aa12499
review CBMLandClassTransitionModule
Namyalg Jun 7, 2022
53a88ae
review CBMLandClassTransitionModule
Namyalg Jun 7, 2022
a439a74
updated
Adexandria Jun 7, 2022
20d4ecb
docs for DynamicGrowthCurveLookupTransform
Namyalg Jun 7, 2022
eee8785
Merge branch 'source-docs' of https://github.com/Namyalg/moja.canada …
Namyalg Jun 7, 2022
f5fddc5
review CBMPeatlandSpinupOutput
Namyalg Jun 8, 2022
568db7c
docs for peatlandturnoverparameters
Namyalg Jun 8, 2022
f5579a8
source docs for CBMSequencer
Adexandria Jun 8, 2022
1651fdc
review PeatlandDisturbance
Adexandria Jun 8, 2022
45ef286
update docs
Namyalg Jun 8, 2022
35ca572
docs for peatlandgrowthcurvetransform
Namyalg Jun 9, 2022
f189a8d
Merge branch 'source-docs' of https://github.com/Namyalg/moja.canada …
Namyalg Jun 9, 2022
56236d0
docs for peatlandgrowthcurvetransform and peatlandgrowthmodule
Namyalg Jun 9, 2022
a0b8405
review cbmsequencer
Namyalg Jun 9, 2022
c745904
docs for cbmspinupdisturbancemodule
Adexandria Jun 10, 2022
37ff5cf
review cbmsequencer
Adexandria Jun 10, 2022
41e6311
review CBMSequencer
Adexandria Jun 10, 2022
d4502f5
review files, add description to files
Namyalg Jun 12, 2022
c15a7ed
review files, add description to files
Namyalg Jun 12, 2022
5099ce1
source docs for PeatlandDecayParameters
Adexandria Jun 14, 2022
0ff10bf
source doc for PeatlandDecayParameters
Adexandria Jun 14, 2022
f03d1d8
source docs for PeatlandFireParameters
Adexandria Jun 14, 2022
74f2245
removed brief description
Adexandria Jun 15, 2022
5ad1cbb
update cbmdisturbancelistener.cpp
Namyalg Jun 16, 2022
c6b457e
review files, add description to files
Namyalg Jun 16, 2022
30f84f6
review source documentation
Adexandria Jun 17, 2022
589a3b6
source documentation for PeatlandGrowthcurve
Adexandria Jun 17, 2022
94bcb51
source docs for perdfactor
Adexandria Jun 17, 2022
6140d1a
review
Adexandria Jun 17, 2022
e438665
review
Adexandria Jun 17, 2022
60745f1
review and write docs, remove cbmstandgrowthcurve.h
Namyalg Jun 20, 2022
9920b48
fix merge conflicts
Namyalg Jun 20, 2022
9ca388f
review, update docs
Namyalg Jun 20, 2022
a5ea79f
include .h docs in .cpp file, write docs for standgrowthcurve
Namyalg Jun 20, 2022
846aa31
docs for standgrowthcurve, review docs
Namyalg Jun 20, 2022
3763e3e
review
Adexandria Jun 22, 2022
710fae5
source docs for CBMTransitionRulesModule
Adexandria Jun 22, 2022
15f9299
docs for growthmultipliermodule, growthcurvetransform
Namyalg Jun 22, 2022
08f4d17
Merge branch 'source-docs' of https://github.com/Namyalg/moja.canada …
Namyalg Jun 22, 2022
3ad9754
review
Adexandria Jun 22, 2022
10b94d0
Merge branch 'source-docs' of https://github.com/Namyalg/moja.canada …
Adexandria Jun 22, 2022
087ba24
review
Adexandria Jun 22, 2022
991b2c0
review
Adexandria Jun 22, 2022
45e4967
docs for mossdecaymodule, mossdisturbance
Namyalg Jun 22, 2022
9194ba9
Merge branch 'source-docs' of https://github.com/Namyalg/moja.canada …
Namyalg Jun 22, 2022
a89be26
docs for mossgrowthmodule, mossturnovermodule
Namyalg Jun 22, 2022
f81d001
update
Namyalg Jun 23, 2022
47b13c2
docs for standbiomasscarboncurve
Namyalg Jun 23, 2022
1c32179
docs for esgymspinupsequencer
Namyalg Jun 24, 2022
c39ee44
docs peatlanddecaymodule
Namyalg Jun 24, 2022
595f0f8
source docs for record
Adexandria Jun 25, 2022
f1512f7
review record
Adexandria Jun 25, 2022
962c627
review
Adexandria Jun 25, 2022
fe977f4
source docs for PeatlandDisturbanceModule
Adexandria Jun 29, 2022
81d456f
review
Adexandria Jun 29, 2022
ae12c22
docs: yieldtablegrowthmodule
Namyalg Jun 29, 2022
53e0379
Merge branch 'source-docs' of https://github.com/Namyalg/moja.canada …
Namyalg Jun 29, 2022
efb5dac
docs:timeseriesidxfromflintdatatransform
Namyalg Jul 6, 2022
43a373f
docs: update smalltreegrowthmodule
Namyalg Jul 10, 2022
2a1abe1
docs: update peatlandturnovermodulebase
Namyalg Jul 10, 2022
d94afa7
docs: update peatlandspinupturnovermodule
Namyalg Jul 10, 2022
d78b558
docs: update peatlandturnovermodule
Namyalg Jul 10, 2022
9832693
source documentation for cbmsequencer
Adexandria Jul 23, 2022
03bfc9b
review source docs
Adexandria Jul 23, 2022
c904799
docs: peatlandspinupnext.cpp
Namyalg Jul 25, 2022
82730c8
update: peatlandspinupnext.cpp
Namyalg Jul 25, 2022
9268960
docs: updates and review
Namyalg Jul 31, 2022
a13fc23
docs: volumetobiomassconverter.cpp
Namyalg Jul 31, 2022
8482093
docs: update cbmdisturbancelistener.cpp, volumetobiomassconverter.cpp
Namyalg Aug 3, 2022
6b572ce
docs: update standcomponent and cbmspinupsequencer
Namyalg Aug 3, 2022
f06ef2b
docs: update flatrecord.cpp
Namyalg Aug 4, 2022
f6fd2b6
chore: event descriptions added to glossary
Namyalg Aug 7, 2022
33474bd
docs: source docs added for moja.modules.cbm
Adexandria Apr 30, 2022
58b5953
fix: merge conflict in cbmaggregatorcsvwriter.cpp
Namyalg Aug 14, 2022
9d7d0c2
Updated/tested to use applied annual water table depth in turnover an…
Apr 11, 2022
02407a4
csv output is now split into subdirectories by year for more efficien…
Apr 19, 2022
de0fc55
Made splitting csv output into files by year optional, off by default.
Apr 25, 2022
478a7b4
Added header to files in debug mode.
May 6, 2022
df5256a
Fix error message strings with nested quotes.
May 9, 2022
6af7219
# This is a combination of 32 commits.
May 20, 2022
0ee6e34
change docs_sphinx to docs
Namyalg Jun 4, 2022
3d705ab
updated source docs for cbmdisturbancelistener
Adexandria Jun 4, 2022
6fbbab1
# This is a combination of 46 commits.
Namyalg Jun 4, 2022
a4dbf2e
fix: merge conflict cbmlandunitdatatransform.cpp
Namyalg Aug 14, 2022
e5d534d
# This is a combination of 49 commits.
Namyalg Aug 14, 2022
231bb2c
# This is a combination of 66 commits.
Namyalg Aug 14, 2022
1194c8d
fix: merge conflict in cbmlandunitdatatransform.cpp
Namyalg Aug 14, 2022
5417a31
fix: merge conflict in cbmspinupdisturbancemodule.cpp
Namyalg Aug 14, 2022
d9cfe85
# This is a combination of 74 commits.
Namyalg Aug 14, 2022
ca5715d
fix: merge conflict
Namyalg Aug 14, 2022
7fbd8d3
fix: merge conflict
Namyalg Aug 14, 2022
4129ca7
fix: merge conflict
Namyalg Aug 14, 2022
4983094
fix: merge conflict
Namyalg Aug 14, 2022
51eb3bd
# This is a combination of 80 commits.
Namyalg Aug 14, 2022
0d620fb
fix: merge conflict
Namyalg Aug 14, 2022
929d392
# This is a combination of 111 commits.
Namyalg Aug 14, 2022
460afc2
In CBMSpinupSequencer, updated to read peatlandId from peatland map, …
Namyalg Aug 14, 2022
cfd872f
fix: merge conflict
Namyalg Aug 14, 2022
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48 changes: 48 additions & 0 deletions .github/workflows/build-docs.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,48 @@
name: Build Source Docs

on:
push:
branches: [ source-docs ]
pull_request:
branches: [ source-docs ]

jobs:
build-source-docs:
runs-on: ubuntu-latest
name: Build Source Documentation
steps:
- name: Checkout repository
uses: actions/checkout@v3

- name: Build Doxygen docs
run: |
sudo apt-get install doxygen
sudo apt-get install graphviz
cd Source/docs
doxygen Doxyfile.in

- name: Set-up Node
uses: actions/setup-node@v1
with:
node-version: "10.x"

- name: Deploy docs
uses: peaceiris/actions-gh-pages@v3
with:
github_token: ${{ secrets.GITHUB_TOKEN }}
publish_dir: Source/docs/_build/html

# - name: Deploy to Netlify
# uses: nwtgck/actions-netlify@v1.2
# with:
# publish-dir: 'Source/docs_sphinx/_build/html'
# production-deploy: true
# github-token: ${{ secrets.GITHUB_TOKEN }}
# deploy-message: "Deploy from GitHub Actions"
# enable-pull-request-comment: false
# enable-commit-comment: true
# overwrites-pull-request-comment: true
# env:
# NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
# NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}
# timeout-minutes: 3
3 changes: 3 additions & 0 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -217,3 +217,6 @@ UpgradeLog*.htm
FakesAssemblies/
_unittestdefinition.cpp
/Source/install_manifest.txt

# Docs
/Source/docs/_build
66 changes: 66 additions & 0 deletions .vscode/settings.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,66 @@
{
"files.associations": {
"vector": "cpp",
"unordered_map": "cpp",
"algorithm": "cpp",
"atomic": "cpp",
"bit": "cpp",
"cctype": "cpp",
"clocale": "cpp",
"cmath": "cpp",
"compare": "cpp",
"concepts": "cpp",
"cstddef": "cpp",
"cstdint": "cpp",
"cstdio": "cpp",
"cstdlib": "cpp",
"cstring": "cpp",
"ctime": "cpp",
"cwchar": "cpp",
"exception": "cpp",
"fstream": "cpp",
"functional": "cpp",
"initializer_list": "cpp",
"iomanip": "cpp",
"ios": "cpp",
"iosfwd": "cpp",
"iostream": "cpp",
"istream": "cpp",
"iterator": "cpp",
"limits": "cpp",
"list": "cpp",
"map": "cpp",
"memory": "cpp",
"new": "cpp",
"numeric": "cpp",
"optional": "cpp",
"ostream": "cpp",
"random": "cpp",
"set": "cpp",
"sstream": "cpp",
"stdexcept": "cpp",
"streambuf": "cpp",
"string": "cpp",
"system_error": "cpp",
"tuple": "cpp",
"type_traits": "cpp",
"typeinfo": "cpp",
"unordered_set": "cpp",
"utility": "cpp",
"valarray": "cpp",
"xfacet": "cpp",
"xhash": "cpp",
"xiosbase": "cpp",
"xlocale": "cpp",
"xlocinfo": "cpp",
"xlocmon": "cpp",
"xlocnum": "cpp",
"xloctime": "cpp",
"xmemory": "cpp",
"xstddef": "cpp",
"xstring": "cpp",
"xtr1common": "cpp",
"xtree": "cpp",
"xutility": "cpp"
}
}
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