docs: add comprehensive API documentation for all refactored modules

- Add API documentation for PineScript Debug Server modules
- Add API documentation for PineScript Debugger modules
- Add API documentation for Command Runners (all languages)
- Add API documentation for Go Config Wizard modules
- Update documentation generator to include all modules
- Update README and index with new module documentation
- All 6 major refactored modules now have complete API documentation

Author: monch1962

docs/README.md

@@ -10,6 +10,36 @@
 - [Complete API Reference](api/API-TEMPLATE-UTILS.md) - All methods and modules
 - [Refactored Modules API](api/REFACTORED-MODULES-API.md) - Comprehensive module documentation
 
+### PineScript Debug Server
+- [Complete API Reference](api/API-DEBUG-SERVER.md) - Web-based debugging interface
+- [Security Manager](api/API-DEBUG-SERVER.md#security-manager-module) - Authentication and security
+- [Debug State Manager](api/API-DEBUG-SERVER.md#debug-state-manager-module) - Debug state management
+- [Code Analyzer](api/API-DEBUG-SERVER.md#code-analyzer-module) - Code analysis utilities
+- [WebSocket Manager](api/API-DEBUG-SERVER.md#websocket-manager-module) - Real-time communication
+
+### PineScript Debugger
+- [Complete API Reference](api/API-PINE-DEBUG.md) - Command-line debugging utilities
+- [Argument Parser](api/API-PINE-DEBUG.md#argument-parser-module) - Command line argument parsing
+- [Code Analyzer](api/API-PINE-DEBUG.md#code-analyzer-module) - Code analysis and metrics
+- [AI Analyzer](api/API-PINE-DEBUG.md#ai-analyzer-module) - AI-assisted debugging suggestions
+- [Command Handler](api/API-PINE-DEBUG.md#command-handler-module) - Command execution and handling
+
+### Command Runners
+- [Complete API Reference](api/API-COMMAND-RUNNERS.md) - Language-specific command execution
+- [Clojure Command Runner](api/API-COMMAND-RUNNERS.md#clojure-command-runner) - Clojure project management
+- [JavaScript/TypeScript Command Runner](api/API-COMMAND-RUNNERS.md#javascripttypescript-command-runner) - JS/TS project management
+- [Python Command Runner](api/API-COMMAND-RUNNERS.md#python-command-runner) - Python project management
+- [Go Command Runner](api/API-COMMAND-RUNNERS.md#go-command-runner) - Go project management
+- [Rust Command Runner](api/API-COMMAND-RUNNERS.md#rust-command-runner) - Rust project management
+- [Elixir Command Runner](api/API-COMMAND-RUNNERS.md#elixir-command-runner) - Elixir project management
+
+### Go Config Wizard
+- [Complete API Reference](api/API-GO-CONFIG-WIZARD.md) - Go project configuration wizard
+- [Go Wizard Core](api/API-GO-CONFIG-WIZARD.md#go-wizard-core-module) - Core wizard functionality
+- [Go Project Detector](api/API-GO-CONFIG-WIZARD.md#go-project-detector-module) - Project detection
+- [Go Config Generator](api/API-GO-CONFIG-WIZARD.md#go-config-generator-module) - Configuration generation
+- [Go Project Creator](api/API-GO-CONFIG-WIZARD.md#go-project-creator-module) - Project creation utilities
+
 ## 🚀 Quick Start
 
 ### Getting Started
@@ -66,6 +96,10 @@
 ### Module Status
 - **PineScript Optimizer**: ✅ Production ready
 - **TemplateUtils**: ✅ Production ready
+- **PineScript Debug Server**: ✅ Production ready
+- **PineScript Debugger**: ✅ Production ready
+- **Command Runners**: ✅ Production ready
+- **Go Config Wizard**: ✅ Production ready
 - **Validation Scripts**: ✅ All passing
 - **Documentation**: ✅ Complete
 
@@ -79,5 +113,5 @@ This documentation is automatically generated. To update:
 
 ---
 
-*Last Generated: 2026-01-28T01:10:24.099Z*  
+*Last Generated: 2026-01-28T01:29:17.979Z*  
 *Documentation Version: 1.0.0*