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NOTE: THE IROKI COMMAND LINE APP IS NO LONGER MAINTAINED. ALL FUTURE WORK WILL BE WITH THE WEB APP: https://github.com/mooreryan/iroki , www.iroki.net. Furthermore, this documentation no longer applies to the web app.

Iroki Wiki

Welcome to the Iroki wiki! Here you will find documentation and tutorials to help you with installing and using Iroki.

Set Up

• Installing FigTree
• Setting Up Your Ruby Environment

Using Iroki

Input Files

• Newick tree
• Color Map
  • Overview
  • Two column color map
  • Three column color map
• Name map
• Biom file

Running Iroki

• Running Iroki with Docker
• Annotation precedence

Miscellaneous

• All available color names
• FigTree Issues