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<divclass="block">R function to get module script file path: "getModuleScript"</div>
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<dd><ahref="../../../constant-values.html#biolockj.module.r.R_Module.R_FUNCTION_GET_MOD_SCRIPT">Constant Field Values</a></dd>
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<divclass="block">This library script contains helper functions used in the R scripts: "BioLockJ_Lib.R"</div>
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<dd><ahref="../../../constant-values.html#biolockj.module.r.R_Module.R_FUNCTION_LIB">Constant Field Values</a></dd>
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<divclass="block">This main R script that sources helper libraries and calls modules main method function: "BioLockJ_MAIN.R"</div>
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<divclass="block"><ahref="../../../biolockj/Config.html" title="class in biolockj"><code>Config</code></a> boolean property "r.saveRData" enables the .RData file to save.</div>
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<divclass="block"><ahref="../../../biolockj/Config.html" title="class in biolockj"><code>Config</code></a> property "exe.Rscript" defines the command line executable to call RScript</div>
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<dd><ahref="../../../constant-values.html#biolockj.module.r.R_Module.EXE_RSCRIPT">Constant Field Values</a></dd>
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<divclass="block"><ahref="../../../biolockj/Config.html" title="class in biolockj"><code>Config</code></a> boolean property "r.debug" sets the debug log function endabled</div>
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<divclass="block"><ahref="../../../biolockj/Config.html" title="class in biolockj"><code>Config</code></a> Integer property "r.plotWidth" sets the plot width in the PDF reports.</div>
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<dd><ahref="../../../constant-values.html#biolockj.module.r.R_Module.R_PLOT_WIDTH">Constant Field Values</a></dd>
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timeout. If undefined, no timeout is used.</div>
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parent.document.title="Uses of Class biolockj.module.r.R_Module";
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parent.document.title="Uses of Class biolockj.module.report.r.R_Module";
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}
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</a></div>
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<!-- ========= END OF TOP NAVBAR ========= -->
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<divclass="header">
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<h2title="Uses of Class biolockj.module.r.R_Module" class="title">Uses of Class<br>biolockj.module.r.R_Module</h2>
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<h2title="Uses of Class biolockj.module.report.r.R_Module" class="title">Uses of Class<br>biolockj.module.report.r.R_Module</h2>
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<tdclass="colFirst"><code>protected static <ahref="https://docs.oracle.com/javase/8/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a></code></td>
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<tdclass="colLast"><spanclass="typeNameLabel">DownloadUtil.</span><code><spanclass="memberNameLink"><ahref="../../../../biolockj/util/DownloadUtil.html#getExts-biolockj.module.r.R_Module-">getExts</a></span>(<ahref="../../../../biolockj/module/r/R_Module.html" title="class in biolockj.module.r">R_Module</a> module)</code>
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<tdclass="colLast"><spanclass="typeNameLabel">DownloadUtil.</span><code><spanclass="memberNameLink"><ahref="../../../../biolockj/util/DownloadUtil.html#getExts-biolockj.module.report.r.R_Module-">getExts</a></span>(<ahref="../../../../biolockj/module/r/R_Module.html" title="class in biolockj.module.r">R_Module</a> module)</code>
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<divclass="block">Get file extensions for each R module to include in scp download command</div>
Copy file name to clipboardExpand all lines: docs/biolockj/util/DownloadUtil.html
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<tdclass="colFirst"><code>protected static <ahref="https://docs.oracle.com/javase/8/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a></code></td>
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<tdclass="colLast"><code><spanclass="memberNameLink"><ahref="../../biolockj/util/DownloadUtil.html#getExts-biolockj.module.r.R_Module-">getExts</a></span>(<ahref="../../biolockj/module/r/R_Module.html" title="class in biolockj.module.r">R_Module</a> module)</code>
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<tdclass="colLast"><code><spanclass="memberNameLink"><ahref="../../biolockj/util/DownloadUtil.html#getExts-biolockj.module.report.r.R_Module-">getExts</a></span>(<ahref="../../biolockj/module/r/R_Module.html" title="class in biolockj.module.r">R_Module</a> module)</code>
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<divclass="block">Get file extensions for each R module to include in scp download command</div>
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@@ -192,7 +192,7 @@ <h3>Constructor Summary</h3>
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<tdclass="colFirst"><code>protected </code></td>
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<tdclass="colLast"><code><spanclass="memberNameLink"><ahref="../../../biolockj/util/r/BaseScript.html#BaseScript-biolockj.module.r.R_Module-">BaseScript</a></span>(<ahref="../../../biolockj/module/r/R_Module.html" title="class in biolockj.module.r">R_Module</a> rModule)</code>
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<tdclass="colLast"><code><spanclass="memberNameLink"><ahref="../../../biolockj/util/r/BaseScript.html#BaseScript-biolockj.module.report.r.R_Module-">BaseScript</a></span>(<ahref="../../../biolockj/module/r/R_Module.html" title="class in biolockj.module.r">R_Module</a> rModule)</code>
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<divclass="block">This method generates the base script R code required by all standard R modules.</div>
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<tdclass="colFirst"><code>static void</code></td>
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<tdclass="colLast"><code><spanclass="memberNameLink"><ahref="../../../biolockj/util/r/BaseScript.html#buildScript-biolockj.module.r.R_Module-">buildScript</a></span>(<ahref="../../../biolockj/module/r/R_Module.html" title="class in biolockj.module.r">R_Module</a> rModule)</code>
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<tdclass="colLast"><code><spanclass="memberNameLink"><ahref="../../../biolockj/util/r/BaseScript.html#buildScript-biolockj.module.report.r.R_Module-">buildScript</a></span>(<ahref="../../../biolockj/module/r/R_Module.html" title="class in biolockj.module.r">R_Module</a> rModule)</code>
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<divclass="block">This method constructs a new BaseScript for the given rModule.</div>
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<tdclass="colFirst"><code>static <ahref="https://docs.oracle.com/javase/8/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a></code></td>
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<tdclass="colLast"><code><spanclass="memberNameLink"><ahref="../../../biolockj/util/r/BaseScript.html#getScriptPath-biolockj.module.r.R_Module-">getScriptPath</a></span>(<ahref="../../../biolockj/module/r/R_Module.html" title="class in biolockj.module.r">R_Module</a> rModule)</code>
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<tdclass="colLast"><code><spanclass="memberNameLink"><ahref="../../../biolockj/util/r/BaseScript.html#getScriptPath-biolockj.module.report.r.R_Module-">getScriptPath</a></span>(<ahref="../../../biolockj/module/r/R_Module.html" title="class in biolockj.module.r">R_Module</a> rModule)</code>
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<divclass="block">Return the path to the base script.</div>
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<tdclass="colFirst"><code>protected <ahref="https://docs.oracle.com/javase/8/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a></code></td>
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<tdclass="colLast"><code><spanclass="memberNameLink"><ahref="../../../biolockj/util/r/BaseScript.html#rLinesInitScript-biolockj.module.r.R_Module-">rLinesInitScript</a></span>(<ahref="../../../biolockj/module/r/R_Module.html" title="class in biolockj.module.r">R_Module</a> rModule)</code>
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<tdclass="colLast"><code><spanclass="memberNameLink"><ahref="../../../biolockj/util/r/BaseScript.html#rLinesInitScript-biolockj.module.report.r.R_Module-">rLinesInitScript</a></span>(<ahref="../../../biolockj/module/r/R_Module.html" title="class in biolockj.module.r">R_Module</a> rModule)</code>
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<divclass="block">Initialize script, set directories at top of script to make it easy for users to update later.</div>
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