Commit fc33017
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Submodule command_line_tools updated 32 files
- .gitignore+15
- .travis.yml+3-5
- MANIFEST.in+1-1
- README.md+7-1
- SUMMARY.md+4
- __init__.py+1-1
- abra2_2.17/abra2_2.17.cwl+1-2
- abra2_2.19/abra2_2.19.cwl+1-4
- bwa_mem_0.7.5a/bwa_mem_0.7.5a.cwl-1
- cwl_commandlinetools/__init__.py+1-1
- docs/README.md+3-1
- docs/SUMMARY.md+2
- marianas_collapsing_first_pass_1.8.1/marianas_first_pass.cwl+1-1
- marianas_collapsing_second_pass_1.8.1/marianas_second_pass.cwl+1-1
- marianas_process_loop_umi_1.8.1/marianas_process_loop_umi.cwl+1-1
- marianas_separate_bams_1.8.1/marianas_separate_bams_1.8.1.cwl+1-1
- mutect_1.1.5/mutect_1.1.5.cwl+1-1
- picard_add_or_replace_read_groups_1.96/picard_add_or_replace_read_groups_1.96.cwl+1-1
- picard_collect_alignment_summary_metrics_2.8.1/picard_collect_alignment_summary_metrics_2.8.1.cwl+1-1
- picard_fix_mate_information_1.96/picard_fix_mate_information_1.96.cwl+1-1
- picard_mark_duplicates_1.96/picard_mark_duplicates_1.96.cwl+1-1
- picard_mark_duplicates_2.8.1/picard_mark_duplicates_2.8.1.cwl+1-1
- requirements.txt+20
- requirements_dev.txt-11
- requirements_p2.7.txt+14
- setup.cfg+1-1
- setup.py+2-2
- tests/test_cwl_commandlinetools.py+2-16
- tox.ini+12-7
- trim_galore_0.6.2/trim_galore_0.6.2.cwl+1-2
- waltz_count_reads_3.1.1/waltz_count_reads_3.1.1.cwl+1-1
- waltz_pileupmatrices_3.1.1/waltz_pileupmatrices_3.1.1.cwl+1-1
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