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Add additional parameters to callback function
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genotype_variants/commands/small_variants.py

Lines changed: 3 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -1022,6 +1022,7 @@ def multiple_samples(
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input_maf,
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reference_fasta,
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gbcms_path,
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None,
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sample_id,
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standard_bam,
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duplex_bam,
@@ -1030,6 +1031,8 @@ def multiple_samples(
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fragment_count,
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mapping_quality,
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threads,
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sample_id,
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False,
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)
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t1_stop = time.perf_counter()
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t2_stop = time.process_time()

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