fix: resolve better-sqlite3 native bindings issue in CI

- Remove better-sqlite3 from ignoredBuiltDependencies in pnpm-workspace.yaml
- Add pnpm store prune before install to ensure fresh native builds
- Keep --force flag for pnpm install to rebuild dependencies

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

Author: muniter

.github/workflows/test.yml

@@ -27,7 +27,10 @@ jobs:
       run: sudo apt-get update && sudo apt-get install -y python3 make g++
 
     - name: Install dependencies
-      run: pnpm install --frozen-lockfile --force
+      run: |
+        # Clear pnpm store to ensure fresh builds
+        pnpm store prune
+        pnpm install --frozen-lockfile --force
     
     - name: Run type checking
       run: pnpm run lint