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fixed sed commands
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module_notebooks/02-building-graphs-with-pggb.ipynb

Lines changed: 7 additions & 1 deletion
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@@ -724,7 +724,7 @@
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"metadata": {},
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"outputs": [],
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"source": [
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"!sed -n '/pggb -i graphs/output_allchrs/,$p' graphs/output_allchrs/*.log > graphs/run-pggb-partitions.sh\n",
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"!sed -n '/pggb -i graphs\\/output_allchrs/,$p' graphs/output_allchrs/*.log > graphs/run-pggb-partitions.sh\n",
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"!chmod +x graphs/run-pggb-partitions.sh"
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]
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},
@@ -883,6 +883,12 @@
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}
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],
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"metadata": {
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"environment": {
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"kernel": "conda-env-nigms-pangenomics-nigms-pangenomics",
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"name": "workbench-notebooks.m127",
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"type": "gcloud",
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"uri": "us-docker.pkg.dev/deeplearning-platform-release/gcr.io/workbench-notebooks:m127"
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},
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"kernelspec": {
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"display_name": "nigms-pangenomics",
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"language": "python",

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