Github Action: Lint Notebooks

Author: github-action

module_notebooks/00-environment-setup.ipynb

@@ -66,17 +66,9 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
-   "metadata": {},
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "nigms-pangenomics\n"
-     ]
-    }
-   ],
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
    "source": [
     "import sys\n",
     "import os\n",
@@ -107,17 +99,9 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
-   "metadata": {},
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "Python 3.12.10\n"
-     ]
-    }
-   ],
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
    "source": [
     "%%bash\n",
     "python --version"
@@ -146,26 +130,9 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
-   "metadata": {},
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "pggb 0.7.4\n",
-      "vg version v1.63.1 \"Boccaleone\"\n",
-      "Compiled with g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 on Linux\n",
-      "Linked against libstd++ 20230528\n",
-      "Using HTSlib headers 101990, library 1.19.1-29-g3cfe8769\n",
-      "Built by anovak@mustard\n",
-      "gfa.h: 0.5-r234\n",
-      "gfatools: 0.4-r214-dirty\n",
-      "blastn: 2.16.0+\n",
-      " Package: blast 2.16.0, build Jun 25 2024 08:58:03\n"
-     ]
-    }
-   ],
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
    "source": [
     "%%bash\n",
     "pggb --version\n",
@@ -208,12 +175,6 @@
   }
  ],
  "metadata": {
-  "environment": {
-   "kernel": "conda-env-nigms-pangenomics-nigms-pangenomics",
-   "name": "workbench-notebooks.m129",
-   "type": "gcloud",
-   "uri": "us-docker.pkg.dev/deeplearning-platform-release/gcr.io/workbench-notebooks:m129"
-  },
   "kernelspec": {
    "display_name": "nigms-pangenomics (Local)",
    "language": "python",