Fixed broken pipe

Author: joannmudge

module_notebooks/04-visualization.ipynb

@@ -259,9 +259,11 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "!grep \"^P.S288C_chrVIII\" graphs/yprp.chrVIII.pggb.gfa | sed 's/+,/\\n/g' | awk '$1>=7200 && $1 <=7800{print}' > graphs/S288C_CUP1_subpath.txt\n",
+    "%%bash\n",
     "\n",
-    "!head graphs/S288C_CUP1_subpath.txt"
+    "grep \"^P.S288C_chrVIII\" graphs/yprp.chrVIII.pggb.gfa | sed 's/+,/\\n/g' | awk '$1>=7200 && $1 <=7800{print}' > graphs/S288C_CUP1_subpath.txt\n",
+    "\n",
+    "head graphs/S288C_CUP1_subpath.txt"
    ]
   },
   {
@@ -392,6 +394,12 @@
   }
  ],
  "metadata": {
+  "environment": {
+   "kernel": "conda-env-nigms-pangenomics-nigms-pangenomics",
+   "name": "workbench-notebooks.m127",
+   "type": "gcloud",
+   "uri": "us-docker.pkg.dev/deeplearning-platform-release/gcr.io/workbench-notebooks:m127"
+  },
   "kernelspec": {
    "display_name": "nigms-pangenomics",
    "language": "python",