10 years directing clinical microbiology laboratories → MSc Bioinformatics (University of Birmingham, 2025) → building interpretable ML systems for clinical diagnostics.

What I build

• Predictive ML models for AMR resistance phenotyping from WGS data (PyTorch, SHAP, LIME)
• Clinical data pipelines on MIMIC-IV, WHO GLASS, and LIS/EHR datasets
• Cloud-native bioinformatics infrastructure (AWS, Nextflow, Docker, Terraform)
• Antibiotic stewardship decision support tools (FHIR output, EUCAST-aligned)

Featured projects

• Interpretable ML/DL for MDR Prediction in K. pneumoniae

  • 1,100+ WGS genomes
  • PyTorch
  • Ensemble
  • SHAP explanations
  • Clinical decision focus

Stack Python PyTorch Scikit-learn SHAP AWS Nextflow Docker FHIR SQL

Long-term Building a precision diagnostics platform for longevity and preventive health.

📍 Ankara, Turkey · Open to remote contract worldwide

• 🔗 https://linkedin.com/in/nasirnesirli
• 🔗 https://nasirnesirli.com