change version number for release; add citation

Author: C.A.P. Linssen

codemeta.json

@@ -32,5 +32,5 @@
     },
     "continuousIntegration": "https://github.com/nest/ode-toolbox/",
     "issueTracker": "https://github.com/nest/ode-toolbox/issues",
-    "version": "2.5.11-post-dev"
+    "version": "2.5.12"
 }

doc/index.rst

@@ -458,7 +458,7 @@ Initially, individual expressions are read from JSON into Shape instances. Subse
 Converting direct functions of time
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
-The aim is to find a representation of the form :math:`a_0 f + a_1 f' + ... + a_{n-1} f^{(n-1)} = f^{(n)}`, with :math:`a_i\in\mathbb{R}\,\forall 0 \leq i < n`. The approach taken here [10]_ works by evaluating the function :math:`f(t)` at times :math:`t = t_0, t_1, \ldots t_n`, which results in :math:`n` equations, that we can use to solve for the coefficients of the potentially :math:`n`-dimensional dynamical system.
+The aim is to find a representation of the form :math:`a_0 f + a_1 f' + ... + a_{n-1} f^{(n-1)} = f^{(n)}`, with :math:`a_i\in\mathbb{R}\,\forall 0 \leq i < n`. The approach taken here [11]_ works by evaluating the function :math:`f(t)` at times :math:`t = t_0, t_1, \ldots t_n`, which results in :math:`n` equations, that we can use to solve for the coefficients of the potentially :math:`n`-dimensional dynamical system.
 
 1. Begin by assuming that the dynamical system is of order :math:`n`.
 2. Find timepoints :math:`t = t_0, t_1, ..., t_n` such that :math:`f(t_i) \neq 0 \forall 0 \leq i \leq n`. The times can be selected at random.
@@ -609,47 +609,51 @@ Citing ODE-toolbox
 
 If you use ODE-toolbox in your work, please cite it depending on the version you are using. (It is recommended to use the latest release version whenever possible.)
 
+For version 2.5.12:
+
+.. [1] Charl Linssen, Shraddha Jain, Pooja N. Babu, Abigail Morrison and Jochen M. Eppler (2026) **ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations.** Zenodo. `doi:10.5281/zenodo.18341161 <10.5281/zenodo.18341161>`__.
+
 For version 2.5.11:
 
-.. [1] Charl Linssen, Shraddha Jain, Pooja N. Babu, Abigail Morrison and Jochen M. Eppler (2025) **ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations.** Zenodo. `doi:10.5281/zenodo.17169870 <https://doi.org/10.5281/zenodo.17169870>`__.
+.. [2] Charl Linssen, Shraddha Jain, Pooja N. Babu, Abigail Morrison and Jochen M. Eppler (2025) **ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations.** Zenodo. `doi:10.5281/zenodo.17169870 <https://doi.org/10.5281/zenodo.17169870>`__.
 
 For version 2.5.10:
 
-.. [2] Charl Linssen, Shraddha Jain, Pooja N. Babu, Abigail Morrison and Jochen M. Eppler (2025) **ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations.** Zenodo. `doi:10.5281/zenodo.17091854 <https://doi.org/10.5281/zenodo.17091854>`__.
+.. [3] Charl Linssen, Shraddha Jain, Pooja N. Babu, Abigail Morrison and Jochen M. Eppler (2025) **ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations.** Zenodo. `doi:10.5281/zenodo.17091854 <https://doi.org/10.5281/zenodo.17091854>`__.
 
 For version 2.5.9:
 
-.. [3] Charl Linssen, Shraddha Jain, Pooja N. Babu, Abigail Morrison and Jochen M. Eppler (2025) **ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations.** Zenodo. `doi:10.5281/zenodo.15474561 <https://doi.org/10.5281/zenodo.15474561>`__.
+.. [4] Charl Linssen, Shraddha Jain, Pooja N. Babu, Abigail Morrison and Jochen M. Eppler (2025) **ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations.** Zenodo. `doi:10.5281/zenodo.15474561 <https://doi.org/10.5281/zenodo.15474561>`__.
 
 For version 2.5.8:
 
-.. [4] Charl Linssen, Shraddha Jain, Pooja N. Babu, Abigail Morrison and Jochen M. Eppler (2025) **ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations.** Zenodo. `doi:10.5281/zenodo.15090637 <https://doi.org/10.5281/zenodo.15090637>`__.
+.. [5] Charl Linssen, Shraddha Jain, Pooja N. Babu, Abigail Morrison and Jochen M. Eppler (2025) **ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations.** Zenodo. `doi:10.5281/zenodo.15090637 <https://doi.org/10.5281/zenodo.15090637>`__.
 
 For version 2.5.7:
 
-.. [5] Charl Linssen, Shraddha Jain, Pooja N. Babu, Abigail Morrison and Jochen M. Eppler (2025) **ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations.** Zenodo. `doi:10.5281/zenodo.15075223 <https://doi.org/10.5281/zenodo.15075223>`__.
+.. [6] Charl Linssen, Shraddha Jain, Pooja N. Babu, Abigail Morrison and Jochen M. Eppler (2025) **ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations.** Zenodo. `doi:10.5281/zenodo.15075223 <https://doi.org/10.5281/zenodo.15075223>`__.
 
 For versions 2.5.1-2.5.6:
 
-.. [6] Charl Linssen, Shraddha Jain, Pooja N. Babu, Abigail Morrison and Jochen M. Eppler (2022) **ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations.** Zenodo. `doi:10.5281/zenodo.7193351 <https://doi.org/10.5281/zenodo.7193351>`__.
+.. [7] Charl Linssen, Shraddha Jain, Pooja N. Babu, Abigail Morrison and Jochen M. Eppler (2022) **ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations.** Zenodo. `doi:10.5281/zenodo.7193351 <https://doi.org/10.5281/zenodo.7193351>`__.
 
 For version 2.4:
 
-.. [7] Charl Linssen, Pooja N. Babu, Abigail Morrison and Jochen M. Eppler (2021) **ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations.** Zenodo. `doi:10.5281/zenodo.5768597 <https://doi.org/10.5281/zenodo.5768597>`__.
+.. [8] Charl Linssen, Pooja N. Babu, Abigail Morrison and Jochen M. Eppler (2021) **ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations.** Zenodo. `doi:10.5281/zenodo.5768597 <https://doi.org/10.5281/zenodo.5768597>`__.
 
 For versions 2.3, 2.2 and 2.1:
 
-.. [8] Charl Linssen, Shraddha Jain, Abigail Morrison and Jochen M. Eppler (2020) **ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations.** Zenodo. `doi:10.5281/zenodo.4245012 <https://doi.org/10.5281/zenodo.4245012>`__.
+.. [9] Charl Linssen, Shraddha Jain, Abigail Morrison and Jochen M. Eppler (2020) **ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations.** Zenodo. `doi:10.5281/zenodo.4245012 <https://doi.org/10.5281/zenodo.4245012>`__.
 
 For version 2.0:
 
-.. [9] Charl Linssen, Abigail Morrison and Jochen M. Eppler (2020) **ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations.** Zenodo. `doi:10.5281/zenodo.3822082 <https://doi.org/10.5281/zenodo.3822082>`__.
+.. [10] Charl Linssen, Abigail Morrison and Jochen M. Eppler (2020) **ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations.** Zenodo. `doi:10.5281/zenodo.3822082 <https://doi.org/10.5281/zenodo.3822082>`__.
 
 
 References
 ----------
 
-.. [10] Inga Blundell, Dimitri Plotnikov, Jochen Martin Eppler and Abigail Morrison (2018) **Automatically selecting a suitable integration scheme for systems of differential equations in neuron models.** Front. Neuroinform. `doi:10.3389/fninf.2018.00050 <https://doi.org/10.3389/fninf.2018.00050>`__.
+.. [11] Inga Blundell, Dimitri Plotnikov, Jochen Martin Eppler and Abigail Morrison (2018) **Automatically selecting a suitable integration scheme for systems of differential equations in neuron models.** Front. Neuroinform. `doi:10.3389/fninf.2018.00050 <https://doi.org/10.3389/fninf.2018.00050>`__.
 
 
 Acknowledgements

setup.py

@@ -27,7 +27,7 @@
 In addition to continuous dynamics, discrete events can be used to model instantaneous changes in system state, such as a neuronal action potential. These can be generated by the system under test as well as applied as external stimuli, making ODE-toolbox particularly well-suited for applications in computational neuroscience."""
 
 setup(name="odetoolbox",
-      version="2.5.11-post-dev",
+      version="2.5.12",
       author="The NEST Initiative",
       classifiers=['Development Status :: 4 - Beta',
                    'Environment :: Console',