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Merge pull request #275 from neuroinformatics-unit/blackcap-paper
Update reference to blackcap paper and add media section
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docs/source/publications.md

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:link: https://doi.org/10.1016/j.cub.2026.03.034
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**Sirmpilatze, N., Felder, A.**, Abdulazhanova, D., Schwigon, L., **Tatarnikov, I.**, Haase, K., Musielak, I., Kobylkov, D., Margrie, T. W., Mouritsen, H., Heyers, D., **Tyson, A. L.**, Weiler, S. (2026) "An open-source three-dimensional digital brain atlas of a migratory bird, the Eurasian blackcap" *Current Biology* 2025.03.04.641293, doi.org/10.1016/j.cub.2026.03.034
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:link: https://doi.org/10.5281/zenodo.19945701
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**Felder, A.**, Chapuis, G., **Tatarnikov, I., Sirmpilatze, N., Tyson, A.** (2026). Mapping the state of neuroscientific software - a vision for collaboration beyond single institutes or labs (1.0). *Zenodo*, doi.org/10.5281/zenodo.19945701
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Duporge, I., **Minano, S., Sirmpilatze, N., Tatarnikov, I.**, Wolf, S., **Tyson, A. L.**, Rubenstein, D. (2025) "Tracking the Flight: Exploring a Computational Framework for Analyzing Escape Responses in Plains Zebra (Equus quagga)" *arXiv* 2505.16882, doi.org/10.48550/arXiv.2505.16882
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:link: https://doi.org/10.1101/2025.03.04.641293
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**Sirmpilatze, N., Felder, A.**, Abdulazhanova, D., Schwigon, L., Haase, K., Musielak, I., Margrie, T. W., Mouritsen, H., Heyers, D., **Tyson, A. L.**, Weiler, S. (2025) "Mapping the magnetoreceptive brain: A 3D digital atlas of the migratory bird Eurasian blackcap (Sylvia atricapilla)" *bioRxiv* 2025.03.04.641293, doi.org/10.1101/2025.03.04.641293
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:link: https://doi.org/10.1101/2024.03.06.583699
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Domine, C. C. J., Carrasco-Davis, R., Hollingsworth L., **Sirmpilatze, N., Tyson, A. L.**, Jarvis, D., Barry, C., Saxe, A. M. (2024) “NeuralPlayground: A Standardised Environment for Evaluating Models of Hippocampus and Entorhinal Cortex” *bioRxiv*, doi.org/10.1101/2024.03.06.583699
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## Mentions in the media
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:::{grid-item-card} Scientists map migratory bird brain
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:link: https://ucl.ac.uk/news/2026/apr/scientists-map-migratory-bird-brain
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UCL News, April 2026
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:::{grid-item-card} Scientists map the blackcap bird brain, opening a new era of 3D digital atlases
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:link: https://www.sainsburywellcome.org/research-news/scientists-map-blackcap-bird-brain-opening-new-era-3d-digital-atlases
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Sainsbury Wellcome Centre, April 2026
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:::{grid-item-card} The Neuro – Irv and Helga Cooper Foundation Open Science Prizes: Meet the winners of an exceptional edition
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:link: https://www.mcgill.ca/neuro/article/neuro-irv-and-helga-cooper-foundation-open-science-prizes-meet-winners-exceptional-edition
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The Neuro (Montreal Neurological Institute-Hospital), October 2025
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:::{grid-item-card} The BrainGlobe Initiative wins 2025 International Prize
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:link: https://www.sainsburywellcome.org/web/research-news/brainglobe-initiative-wins-2025-international-prize
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Sainsbury Wellcome Centre, October 2025
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:::{grid-item-card} Mapping the migratory bird brain
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:link: https://www.sainsburywellcome.org/web/blog/mapping-migratory-bird-brain
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Sainsbury Wellcome Centre, March 2025
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:::{grid-item-card} BrainGlobe Initiative celebrates open-source software award
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:link: https://www.sainsburywellcome.org/web/blog/brainglobe-initiative-celebrates-open-source-software-award
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Sainsbury Wellcome Centre, October 2024
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