From 0a117c6a286e151a129c4652442dafe5c3da7330 Mon Sep 17 00:00:00 2001 From: lauraporta <29216006+lauraporta@users.noreply.github.com> Date: Tue, 5 May 2026 15:05:11 +0100 Subject: [PATCH 1/3] Update photon-mosaic description (#266) --- docs/source/projects.md | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/docs/source/projects.md b/docs/source/projects.md index 11989c26..c5d8449a 100644 --- a/docs/source/projects.md +++ b/docs/source/projects.md @@ -62,10 +62,8 @@ test different pipeline configurations. ## Optophysiology ::::{grid} 1 1 1 1 :::{grid-item-card} {fas}`sun;sd-text-primary` photon-mosaic -:link: https://photon-mosaic.neuroinformatics.dev/ -photon-mosaic simplifies the analysis of multi-photon calcium imaging data by integrating algorithms from tools like Suite2p and CaImAn into a modular pipeline. Researchers can evaluate, compare, and combine methods for each processing step, such as registration or source extraction, and explore metrics to identify the best fit for their datasets. - -With support for local or cluster-based parallelization, photon-mosaic provides visualization tools, reports, and guides to streamline decision-making and enhance reproducibility. +:link: https://github.com/photon-mosaic +`photon-mosaic` is a collaborative project that aims to standardise multiphoton image analysis in neuroscience. Development is currently led by the [Neuroinformatics Unit](https://github.com/neuroinformatics-unit) and the [Allen Institute for Neural Dynamics](https://github.com/AllenNeuralDynamics). ::: :::: From 8d197deb22e478ccd10f79dcb7e69a5486103b2b Mon Sep 17 00:00:00 2001 From: Laura Porta Date: Tue, 5 May 2026 16:52:52 +0100 Subject: [PATCH 2/3] Update docs/source/projects.md Co-authored-by: Alessandro Felder --- docs/source/projects.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/projects.md b/docs/source/projects.md index c5d8449a..006e2cba 100644 --- a/docs/source/projects.md +++ b/docs/source/projects.md @@ -63,7 +63,7 @@ test different pipeline configurations. ::::{grid} 1 1 1 1 :::{grid-item-card} {fas}`sun;sd-text-primary` photon-mosaic :link: https://github.com/photon-mosaic -`photon-mosaic` is a collaborative project that aims to standardise multiphoton image analysis in neuroscience. Development is currently led by the [Neuroinformatics Unit](https://github.com/neuroinformatics-unit) and the [Allen Institute for Neural Dynamics](https://github.com/AllenNeuralDynamics). +`photon-mosaic` is a collaborative project that aims to standardise multiphoton image analysis in neuroscience. Development is currently led by the [Neuroinformatics Unit](https://github.com/neuroinformatics-unit), the [Allen Institute for Neural Dynamics](https://github.com/AllenNeuralDynamics) and the [International Brain Lab](https://www.internationalbrainlab.com/). ::: :::: From 9b2e6c7f33f0693c2159148e77b893ea97f7ac62 Mon Sep 17 00:00:00 2001 From: Laura Porta Date: Tue, 5 May 2026 17:10:11 +0100 Subject: [PATCH 3/3] Update docs/source/projects.md Co-authored-by: Alessandro Felder --- docs/source/projects.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/projects.md b/docs/source/projects.md index 006e2cba..ba7bf8f5 100644 --- a/docs/source/projects.md +++ b/docs/source/projects.md @@ -63,7 +63,7 @@ test different pipeline configurations. ::::{grid} 1 1 1 1 :::{grid-item-card} {fas}`sun;sd-text-primary` photon-mosaic :link: https://github.com/photon-mosaic -`photon-mosaic` is a collaborative project that aims to standardise multiphoton image analysis in neuroscience. Development is currently led by the [Neuroinformatics Unit](https://github.com/neuroinformatics-unit), the [Allen Institute for Neural Dynamics](https://github.com/AllenNeuralDynamics) and the [International Brain Lab](https://www.internationalbrainlab.com/). +`photon-mosaic` is a collaborative project that aims to standardise multiphoton image analysis in neuroscience. Development is currently led by the [Neuroinformatics Unit](https://github.com/neuroinformatics-unit), the [Allen Institute for Neural Dynamics](https://github.com/AllenNeuralDynamics) and the [International Brain Laboratory](https://www.internationalbrainlab.com/). ::: ::::