Merge pull request #344 from nextstrain/uncompress-open-data

ingest/extract_open_data: Do not compress intermediate files

Author: joverlee521

ingest/Snakefile

@@ -48,8 +48,8 @@ rule extract_open_data:
         metadata="results/metadata.tsv",
         sequences="results/sequences.fasta",
     output:
-        metadata="results/metadata_open.tsv.zst",
-        sequences="results/sequences_open.fasta.zst",
+        metadata="results/metadata_open.tsv",
+        sequences="results/sequences_open.fasta",
     shell:
         """
         augur filter --metadata {input.metadata} \

ingest/build-configs/nextstrain-automation/config.yaml

@@ -22,8 +22,8 @@ upload:
       alignment_with_restricted.fasta.zst: results/alignment.fasta
       translations_with_restricted.zip: results/translations.zip
 
-      metadata.tsv.zst: results/metadata_open.tsv.zst
-      sequences.fasta.zst: results/sequences_open.fasta.zst
+      metadata.tsv.zst: results/metadata_open.tsv
+      sequences.fasta.zst: results/sequences_open.fasta
 
     cloudfront_domain: 'data.nextstrain.org'