diff --git a/ingest/Snakefile b/ingest/Snakefile index 965f0d43..ac5e56fb 100644 --- a/ingest/Snakefile +++ b/ingest/Snakefile @@ -48,8 +48,8 @@ rule extract_open_data: metadata="results/metadata.tsv", sequences="results/sequences.fasta", output: - metadata="results/metadata_open.tsv.zst", - sequences="results/sequences_open.fasta.zst", + metadata="results/metadata_open.tsv", + sequences="results/sequences_open.fasta", shell: """ augur filter --metadata {input.metadata} \ diff --git a/ingest/build-configs/nextstrain-automation/config.yaml b/ingest/build-configs/nextstrain-automation/config.yaml index e5e483b2..b9f9b9a2 100644 --- a/ingest/build-configs/nextstrain-automation/config.yaml +++ b/ingest/build-configs/nextstrain-automation/config.yaml @@ -22,8 +22,8 @@ upload: alignment_with_restricted.fasta.zst: results/alignment.fasta translations_with_restricted.zip: results/translations.zip - metadata.tsv.zst: results/metadata_open.tsv.zst - sequences.fasta.zst: results/sequences_open.fasta.zst + metadata.tsv.zst: results/metadata_open.tsv + sequences.fasta.zst: results/sequences_open.fasta cloudfront_domain: 'data.nextstrain.org'