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fix(nextclade): align dataset metadata and qc config with schema #52

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Merged
ivan-aksamentov merged 1 commit into from
Mar 6, 2026
Merged

fix(nextclade): align dataset metadata and qc config with schema #52

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12 changes: 4 additions & 8 deletions nextclade/defaults/genome/pathogen.json
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Original file line number Diff line number Diff line change
Expand Up @@ -20,15 +20,13 @@
"attributes": {
"name": "Mumps MuV Genotypes (Full genome)",
"reference name": "Jeryl-Lynn (genotype A)",
"reference accession": "D90232"
"reference accession": "D90232",
"experimental": true
},
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
},
"deprecated": false,
"enabled": true,
"experimental": true,
"files": {
"changelog": "CHANGELOG.md",
"examples": "sequences.fasta",
Expand All @@ -54,13 +52,11 @@
"missingData": {
"enabled": true,
"missingDataThreshold": 2000,
"scoreBias": 500,
"scoreWeight": 50
"scoreBias": 500
},
"mixedSites": {
"enabled": true,
"mixedSitesThreshold": 15,
"scoreWeight": 50
"mixedSitesThreshold": 15
},
"frameShifts": {
"enabled": true,
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6 changes: 2 additions & 4 deletions nextclade/defaults/sh/pathogen.json
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Original file line number Diff line number Diff line change
Expand Up @@ -20,15 +20,13 @@
"attributes": {
"name": "Mumps MuV Genotypes (SH gene 315nt region)",
"reference name": "Jeryl-Lynn (genotype A)",
"reference accession": "D90232"
"reference accession": "D90232",
"experimental": true
},
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
},
"deprecated": false,
"enabled": true,
"experimental": true,
"files": {
"changelog": "CHANGELOG.md",
"examples": "sequences.fasta",
Expand Down