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Pull requests: nextstrain/nextclade
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feat: detect putative recombinant regions
#1774
opened Jul 8, 2026 by
ivan-aksamentov
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12 of 23 tasks
perf: speed up dataset-suggestion minimizer search
#1773
opened Jul 7, 2026 by
ivan-aksamentov
Member
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Draft
6 of 7 tasks
feat(sort): per-dataset minimizer cutoff exponent
#1772
opened Jul 7, 2026 by
ivan-aksamentov
Member
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Draft
5 tasks done
feat(sort): multi-reference minimizer scoring for dataset suggestion
#1771
opened Jul 7, 2026 by
ivan-aksamentov
Member
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6 tasks done
feat: add mutation pattern analysis
#1767
opened May 26, 2026 by
ivan-aksamentov
Member
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8 tasks done
chore(deps): bump auspice from 2.67.0 to 2.68.0 in /packages/nextclade-web
dependencies
Pull requests that update a dependency file
javascript
Pull requests that update Javascript code
#1743
opened Jan 20, 2026 by
dependabot
Bot
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feat(qc): add combined recombination detection strategies B+C+D+F
#1742
opened Jan 20, 2026 by
ivan-aksamentov
Member
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feat(qc): recombination: F: Label Switching
#1741
opened Jan 13, 2026 by
ivan-aksamentov
Member
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feat(qc): recombination: E: Multi-Ancestor
#1740
opened Jan 13, 2026 by
ivan-aksamentov
Member
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feat(qc): recombination: D: Reversion Clustering
#1739
opened Jan 13, 2026 by
ivan-aksamentov
Member
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feat(qc): recombination: C: Cluster Gaps
#1738
opened Jan 13, 2026 by
ivan-aksamentov
Member
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feat(qc): recombination: B: Spatial Uniformity
#1737
opened Jan 13, 2026 by
ivan-aksamentov
Member
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feat(qc): recombination: A: Weighted Threshold
#1736
opened Jan 13, 2026 by
ivan-aksamentov
Member
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chore(deps): bump actions/cache from 4 to 5
dependencies
Pull requests that update a dependency file
github_actions
Pull requests that update GitHub Actions code
#1714
opened Dec 15, 2025 by
dependabot
Bot
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chore(deps): bump actions/download-artifact from 6 to 7
dependencies
Pull requests that update a dependency file
github_actions
Pull requests that update GitHub Actions code
#1713
opened Dec 15, 2025 by
dependabot
Bot
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chore(deps): bump actions/upload-artifact from 5 to 6
dependencies
Pull requests that update a dependency file
github_actions
Pull requests that update GitHub Actions code
#1712
opened Dec 15, 2025 by
dependabot
Bot
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chore(deps): bump actions/checkout from 5 to 6
dependencies
Pull requests that update a dependency file
github_actions
Pull requests that update GitHub Actions code
#1706
opened Nov 24, 2025 by
dependabot
Bot
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perf(sort): use lookup table to speed up sequence conversion to bitpacked representation
#1649
opened Jun 9, 2025 by
corneliusroemer
Member
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chore: switch off LTO for profiling profile
#1648
opened Jun 9, 2025 by
corneliusroemer
Member
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feat(cli): add "sort-and-run" subcommand
#1439
opened Apr 18, 2024 by
ivan-aksamentov
Member
•
Draft
feat: add dataset info to output json [wip]
#1311
opened Nov 3, 2023 by
ivan-aksamentov
Member
•
Draft
feat(web): handle rust panics in wasm module gracefully [wip]
#1310
opened Nov 3, 2023 by
ivan-aksamentov
Member
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Draft
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