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data_output/index.json

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}
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}
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},
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{
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"path": "nextstrain/orthoebolavirus/bdbv",
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"shortcuts": [
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"nextstrain/ebola/bebov"
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],
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"attributes": {
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"name": "Bundibugyo ebolavirus",
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"reference accession": "NC_014373.1",
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"reference name": "UGA/2007/Butalya-811250",
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"experimental": true
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},
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"files": {
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"treeJson": "tree.json",
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"changelog": "CHANGELOG.md",
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"examples": "examples.fasta",
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"genomeAnnotation": "genome_annotation.gff3",
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"pathogenJson": "pathogen.json",
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"readme": "README.md",
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"reference": "reference.fasta"
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},
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"capabilities": {
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"qc": [
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"frameShifts",
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"missingData",
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"mixedSites",
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"privateMutations",
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"stopCodons"
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]
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},
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"versions": [
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{
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"tag": "unreleased",
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"compatibility": {
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"cli": "3.0.0-alpha.0",
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"web": "3.0.0-alpha.0"
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}
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}
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],
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"version": {
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"tag": "unreleased",
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"compatibility": {
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"cli": "3.0.0-alpha.0",
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"web": "3.0.0-alpha.0"
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}
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}
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},
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{
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"path": "nextstrain/measles/genome/WHO-2012",
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"shortcuts": [
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}
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}
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},
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{
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"path": "nextstrain/orthoebolavirus/bdbv",
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"shortcuts": [
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"nextstrain/ebola/bebov"
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],
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"attributes": {
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"name": "Bundibugyo ebolavirus",
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"reference accession": "NC_014373.1",
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"reference name": "UGA/2007/Butalya-811250",
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"experimental": true
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},
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"files": {
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"treeJson": "tree.json",
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"changelog": "CHANGELOG.md",
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"examples": "examples.fasta",
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"genomeAnnotation": "genome_annotation.gff3",
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"pathogenJson": "pathogen.json",
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"readme": "README.md",
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"reference": "reference.fasta"
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},
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"capabilities": {
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"qc": [
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"frameShifts",
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"missingData",
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"mixedSites",
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"privateMutations",
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"stopCodons"
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]
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},
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"versions": [
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{
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"tag": "unreleased",
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"compatibility": {
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"cli": "3.0.0-alpha.0",
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"web": "3.0.0-alpha.0"
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}
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}
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],
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"version": {
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"tag": "unreleased",
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"compatibility": {
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"cli": "3.0.0-alpha.0",
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"web": "3.0.0-alpha.0"
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}
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}
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},
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{
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"path": "nextstrain/sars-cov-2/BA.2",
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"shortcuts": [

data_output/nextstrain/orthoebolavirus/bdbv/unreleased/README.md

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| Key | Value |
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| ---------------------- | ------------------------------------------------------------------------------- |
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| authors | [Richard Neher](https://neherlab.org) |
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| data source | Genbank |
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| nextclade dataset path | nextstrain/orthoebolavirus/bdbv |
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| data source | Genbank |
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| nextclade dataset path | nextstrain/orthoebolavirus/bdbv |
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| annotation | [NC_014373.1](https://www.ncbi.nlm.nih.gov/nuccore/NC_014373.1) |
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Bundibugyo virus [(Orthoebolavirus bundibugyoense)](https://ictv.global/report/chapter/filoviridae/filoviridae/orthoebolavirus).
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This Nextclade dataset for Bundibugyo virus [(Orthoebolavirus bundibugyoense)](https://ictv.global/report/chapter/filoviridae/filoviridae/orthoebolavirus) aligns to the reference sequence [NC_014373.1](https://www.ncbi.nlm.nih.gov/nuccore/NC_014373) and translates major CDS. It scores the sequence with respect to unexpected frameshifts or stop codons, missing sequence (in form of `NNN`s) and mixed bases.
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