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corneliusroemernextstrain-bot
corneliusroemer
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nextstrain-bot
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Update SC2 (#328)
* Update SC2 * chore: rebuild [skip ci] --------- Co-authored-by: nextstrain-bot <hello@nextstrain.org>
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‎data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md‎

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## Unreleased
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3+
- Add all 185 Pango lineages newly designated between 2025-06-09 and 2025-07-30. Unfold below to see a list of all newly included lineages with their designation dates:
4+
5+
<details>
6+
<summary> Newly included lineages, with designation date in parentheses</summary>
7+
8+
- PE.1.1 (2025-06-12)
9+
- PE.1.3 (2025-06-12)
10+
- PE.1.4 (2025-06-12)
11+
- PE.1.5 (2025-06-12)
12+
- MC.10.2.3 (2025-06-12)
13+
- XEC.27.1 (2025-06-12)
14+
- XEC.27.2 (2025-06-12)
15+
- NY.16.2 (2025-06-12)
16+
- XEC.23.1 (2025-06-12)
17+
- MC.9.3 (2025-06-12)
18+
- XEC.2.7 (2025-06-12)
19+
- XEC.2.8 (2025-06-12)
20+
- XEC.2.9 (2025-06-12)
21+
- XEC.2.10 (2025-06-12)
22+
- XEC.41 (2025-06-12)
23+
- PZ.1 (2025-06-13)
24+
- QA.1 (2025-06-13)
25+
- QA.2 (2025-06-13)
26+
- QA.3 (2025-06-13)
27+
- QA.4 (2025-06-13)
28+
- QA.5 (2025-06-13)
29+
- QA.6 (2025-06-13)
30+
- QA.7 (2025-06-13)
31+
- NT.3 (2025-06-13)
32+
- NT.2.1 (2025-06-13)
33+
- NT.4 (2025-06-13)
34+
- NT.5 (2025-06-13)
35+
- NT.6 (2025-06-13)
36+
- LF.7.1.12 (2025-06-13)
37+
- LF.7.1.13 (2025-06-13)
38+
- QB.1 (2025-06-13)
39+
- XFP.1 (2025-06-14)
40+
- XFG.4 (2025-06-14)
41+
- XFG.5 (2025-06-14)
42+
- XFG.6 (2025-06-14)
43+
- NY.18 (2025-06-14)
44+
- NY.18.1 (2025-06-14)
45+
- XDY.8 (2025-06-15)
46+
- XDY.9 (2025-06-15)
47+
- XDY.10 (2025-06-15)
48+
- XDY.11 (2025-06-15)
49+
- XDY.12 (2025-06-15)
50+
- XDY.12.1 (2025-06-15)
51+
- XDY.12.1.1 (2025-06-15)
52+
- XFG.7 (2025-06-16)
53+
- PY.1.1 (2025-06-16)
54+
- QC.1 (2025-06-17)
55+
- QC.2 (2025-06-17)
56+
- QC.3 (2025-06-17)
57+
- QC.4 (2025-06-17)
58+
- QC.5 (2025-06-19)
59+
- PQ.17 (2025-06-28)
60+
- PQ.10.1 (2025-06-28)
61+
- PQ.2.1 (2025-06-28)
62+
- PQ.13.1 (2025-06-28)
63+
- PY.4.1 (2025-07-02)
64+
- PY.1.1.1 (2025-07-02)
65+
- PY.1.2 (2025-07-03)
66+
- PY.1.3 (2025-07-03)
67+
- PY.1.4 (2025-07-03)
68+
- PY.1.4.1 (2025-07-03)
69+
- XFP.2 (2025-07-08)
70+
- XFP.1.1 (2025-07-08)
71+
- XFG.8 (2025-07-08)
72+
- XFG.9 (2025-07-08)
73+
- XFG.10 (2025-07-08)
74+
- XFQ (2025-07-08)
75+
- XFG.11 (2025-07-08)
76+
- XFG.12 (2025-07-08)
77+
- XFG.13 (2025-07-08)
78+
- XFG.3.2 (2025-07-08)
79+
- XFG.3.3 (2025-07-08)
80+
- XFG.3.4 (2025-07-08)
81+
- XFG.3.4.1 (2025-07-08)
82+
- XFG.14 (2025-07-08)
83+
- PQ.2.2 (2025-07-14)
84+
- PQ.1.2 (2025-07-14)
85+
- PQ.1.3 (2025-07-14)
86+
- PQ.1.4 (2025-07-14)
87+
- PQ.18 (2025-07-14)
88+
- PQ.19 (2025-07-14)
89+
- PQ.20 (2025-07-14)
90+
- PQ.21 (2025-07-14)
91+
- PQ.22 (2025-07-14)
92+
- XFG.15 (2025-07-14)
93+
- PQ.23 (2025-07-14)
94+
- PQ.9.1 (2025-07-14)
95+
- PQ.8.1 (2025-07-14)
96+
- LF.7.11 (2025-07-14)
97+
- PQ.24 (2025-07-14)
98+
- XFG.4.1 (2025-07-14)
99+
- QD.1 (2025-07-14)
100+
- XFG.9.1 (2025-07-18)
101+
- XFG.3.4.2 (2025-07-18)
102+
- XFC.1.3 (2025-07-18)
103+
- XFC.1.4 (2025-07-18)
104+
- XFC.3 (2025-07-18)
105+
- LF.7.9.4 (2025-07-18)
106+
- LF.7.9.5 (2025-07-18)
107+
- MC.18.1 (2025-07-18)
108+
- MC.18.2 (2025-07-18)
109+
- NY.1.1 (2025-07-18)
110+
- NY.1.2 (2025-07-18)
111+
- NY.1.2.1 (2025-07-18)
112+
- LP.8.1.16 (2025-07-18)
113+
- QE.1 (2025-07-18)
114+
- QF.1 (2025-07-18)
115+
- PQ.25 (2025-07-18)
116+
- NY.3.3 (2025-07-18)
117+
- NY.3.3.1 (2025-07-18)
118+
- NY.3.4 (2025-07-18)
119+
- NY.3.5 (2025-07-18)
120+
- NY.3.6 (2025-07-18)
121+
- NY.19 (2025-07-19)
122+
- XFG.14.1 (2025-07-21)
123+
- XFG.14.2 (2025-07-21)
124+
- XFG.16 (2025-07-21)
125+
- XFG.17 (2025-07-21)
126+
- XFG.18 (2025-07-21)
127+
- XFG.19 (2025-07-21)
128+
- PW.3 (2025-07-22)
129+
- LF.7.10.2 (2025-07-22)
130+
- PL.3 (2025-07-22)
131+
- PP.1.1 (2025-07-22)
132+
- PP.1.1.1 (2025-07-22)
133+
- NW.3 (2025-07-22)
134+
- NW.1.4 (2025-07-22)
135+
- NW.1.5 (2025-07-22)
136+
- NW.1.6 (2025-07-22)
137+
- NW.1.7 (2025-07-22)
138+
- XES.1 (2025-07-22)
139+
- XES.1.1 (2025-07-22)
140+
- XFC.1.5 (2025-07-22)
141+
- XFC.1.6 (2025-07-22)
142+
- XFC.1.8 (2025-07-22)
143+
- XFC.1.9 (2025-07-22)
144+
- XFN.1 (2025-07-24)
145+
- XFN.2 (2025-07-24)
146+
- PG.3.1 (2025-07-25)
147+
- XFG.2.1 (2025-07-25)
148+
- XFG.2.2 (2025-07-25)
149+
- XFG.3.4.3 (2025-07-25)
150+
- XFG.21 (2025-07-25)
151+
- XFG.22 (2025-07-25)
152+
- LF.7.12 (2025-07-28)
153+
- LF.7.12.1 (2025-07-28)
154+
- PQ.26 (2025-07-29)
155+
- PQ.4.1 (2025-07-29)
156+
- PQ.5.1 (2025-07-29)
157+
- PQ.5.1.1 (2025-07-29)
158+
- PQ.5.1.2 (2025-07-29)
159+
- PQ.27 (2025-07-29)
160+
- PQ.28 (2025-07-29)
161+
- XFG.3.5 (2025-07-29)
162+
- XFG.3.5.1 (2025-07-29)
163+
- XFG.3.6 (2025-07-29)
164+
- XFG.3.7 (2025-07-29)
165+
- XFG.3.1.1 (2025-07-29)
166+
- XFG.3.1.2 (2025-07-29)
167+
- XFG.3.1.3 (2025-07-29)
168+
- NL.23 (2025-07-29)
169+
- NL.5.2.1 (2025-07-29)
170+
- LB.1.7.4 (2025-07-29)
171+
- LB.1.11 (2025-07-29)
172+
- LB.1.11.1 (2025-07-29)
173+
- LB.1.11.2 (2025-07-29)
174+
- XFR (2025-07-29)
175+
- XFS (2025-07-29)
176+
- QG.1 (2025-07-29)
177+
- QH.1 (2025-07-29)
178+
- XFT (2025-07-29)
179+
- XFU (2025-07-29)
180+
- QC.2.1 (2025-07-29)
181+
- QC.2.2 (2025-07-29)
182+
- QC.2.3 (2025-07-29)
183+
- QC.4.1 (2025-07-29)
184+
- QC.6 (2025-07-29)
185+
- LF.7.6.3 (2025-07-29)
186+
- LF.7.6.4 (2025-07-29)
187+
- LF.7.6.5 (2025-07-29)
188+
- LF.7.1.14 (2025-07-29)
189+
- XFG.3.3.1 (2025-07-29)
190+
- XFV (2025-07-29)
191+
- QJ.1 (2025-07-29)
192+
- QJ.2 (2025-07-29)
193+
194+
</details>
195+
1196
## 2025-06-09T15:42:38Z
2197

3198
- Add newly designated Nextstrain clade 25C (XFG)

‎data/nextstrain/sars-cov-2/BA.2.86/tree.json‎

Lines changed: 1 addition & 1 deletion
Large diffs are not rendered by default.

‎data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md‎

Lines changed: 195 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,198 @@
1+
## Unreleased
2+
3+
- Add all 185 Pango lineages newly designated between 2025-06-09 and 2025-07-30. Unfold below to see a list of all newly included lineages with their designation dates:
4+
5+
<details>
6+
<summary> Newly included lineages, with designation date in parentheses</summary>
7+
8+
- PE.1.1 (2025-06-12)
9+
- PE.1.3 (2025-06-12)
10+
- PE.1.4 (2025-06-12)
11+
- PE.1.5 (2025-06-12)
12+
- MC.10.2.3 (2025-06-12)
13+
- XEC.27.1 (2025-06-12)
14+
- XEC.27.2 (2025-06-12)
15+
- NY.16.2 (2025-06-12)
16+
- XEC.23.1 (2025-06-12)
17+
- MC.9.3 (2025-06-12)
18+
- XEC.2.7 (2025-06-12)
19+
- XEC.2.8 (2025-06-12)
20+
- XEC.2.9 (2025-06-12)
21+
- XEC.2.10 (2025-06-12)
22+
- XEC.41 (2025-06-12)
23+
- PZ.1 (2025-06-13)
24+
- QA.1 (2025-06-13)
25+
- QA.2 (2025-06-13)
26+
- QA.3 (2025-06-13)
27+
- QA.4 (2025-06-13)
28+
- QA.5 (2025-06-13)
29+
- QA.6 (2025-06-13)
30+
- QA.7 (2025-06-13)
31+
- NT.3 (2025-06-13)
32+
- NT.2.1 (2025-06-13)
33+
- NT.4 (2025-06-13)
34+
- NT.5 (2025-06-13)
35+
- NT.6 (2025-06-13)
36+
- LF.7.1.12 (2025-06-13)
37+
- LF.7.1.13 (2025-06-13)
38+
- QB.1 (2025-06-13)
39+
- XFP.1 (2025-06-14)
40+
- XFG.4 (2025-06-14)
41+
- XFG.5 (2025-06-14)
42+
- XFG.6 (2025-06-14)
43+
- NY.18 (2025-06-14)
44+
- NY.18.1 (2025-06-14)
45+
- XDY.8 (2025-06-15)
46+
- XDY.9 (2025-06-15)
47+
- XDY.10 (2025-06-15)
48+
- XDY.11 (2025-06-15)
49+
- XDY.12 (2025-06-15)
50+
- XDY.12.1 (2025-06-15)
51+
- XDY.12.1.1 (2025-06-15)
52+
- XFG.7 (2025-06-16)
53+
- PY.1.1 (2025-06-16)
54+
- QC.1 (2025-06-17)
55+
- QC.2 (2025-06-17)
56+
- QC.3 (2025-06-17)
57+
- QC.4 (2025-06-17)
58+
- QC.5 (2025-06-19)
59+
- PQ.17 (2025-06-28)
60+
- PQ.10.1 (2025-06-28)
61+
- PQ.2.1 (2025-06-28)
62+
- PQ.13.1 (2025-06-28)
63+
- PY.4.1 (2025-07-02)
64+
- PY.1.1.1 (2025-07-02)
65+
- PY.1.2 (2025-07-03)
66+
- PY.1.3 (2025-07-03)
67+
- PY.1.4 (2025-07-03)
68+
- PY.1.4.1 (2025-07-03)
69+
- XFP.2 (2025-07-08)
70+
- XFP.1.1 (2025-07-08)
71+
- XFG.8 (2025-07-08)
72+
- XFG.9 (2025-07-08)
73+
- XFG.10 (2025-07-08)
74+
- XFQ (2025-07-08)
75+
- XFG.11 (2025-07-08)
76+
- XFG.12 (2025-07-08)
77+
- XFG.13 (2025-07-08)
78+
- XFG.3.2 (2025-07-08)
79+
- XFG.3.3 (2025-07-08)
80+
- XFG.3.4 (2025-07-08)
81+
- XFG.3.4.1 (2025-07-08)
82+
- XFG.14 (2025-07-08)
83+
- PQ.2.2 (2025-07-14)
84+
- PQ.1.2 (2025-07-14)
85+
- PQ.1.3 (2025-07-14)
86+
- PQ.1.4 (2025-07-14)
87+
- PQ.18 (2025-07-14)
88+
- PQ.19 (2025-07-14)
89+
- PQ.20 (2025-07-14)
90+
- PQ.21 (2025-07-14)
91+
- PQ.22 (2025-07-14)
92+
- XFG.15 (2025-07-14)
93+
- PQ.23 (2025-07-14)
94+
- PQ.9.1 (2025-07-14)
95+
- PQ.8.1 (2025-07-14)
96+
- LF.7.11 (2025-07-14)
97+
- PQ.24 (2025-07-14)
98+
- XFG.4.1 (2025-07-14)
99+
- QD.1 (2025-07-14)
100+
- XFG.9.1 (2025-07-18)
101+
- XFG.3.4.2 (2025-07-18)
102+
- XFC.1.3 (2025-07-18)
103+
- XFC.1.4 (2025-07-18)
104+
- XFC.3 (2025-07-18)
105+
- LF.7.9.4 (2025-07-18)
106+
- LF.7.9.5 (2025-07-18)
107+
- MC.18.1 (2025-07-18)
108+
- MC.18.2 (2025-07-18)
109+
- NY.1.1 (2025-07-18)
110+
- NY.1.2 (2025-07-18)
111+
- NY.1.2.1 (2025-07-18)
112+
- LP.8.1.16 (2025-07-18)
113+
- QE.1 (2025-07-18)
114+
- QF.1 (2025-07-18)
115+
- PQ.25 (2025-07-18)
116+
- NY.3.3 (2025-07-18)
117+
- NY.3.3.1 (2025-07-18)
118+
- NY.3.4 (2025-07-18)
119+
- NY.3.5 (2025-07-18)
120+
- NY.3.6 (2025-07-18)
121+
- NY.19 (2025-07-19)
122+
- XFG.14.1 (2025-07-21)
123+
- XFG.14.2 (2025-07-21)
124+
- XFG.16 (2025-07-21)
125+
- XFG.17 (2025-07-21)
126+
- XFG.18 (2025-07-21)
127+
- XFG.19 (2025-07-21)
128+
- PW.3 (2025-07-22)
129+
- LF.7.10.2 (2025-07-22)
130+
- PL.3 (2025-07-22)
131+
- PP.1.1 (2025-07-22)
132+
- PP.1.1.1 (2025-07-22)
133+
- NW.3 (2025-07-22)
134+
- NW.1.4 (2025-07-22)
135+
- NW.1.5 (2025-07-22)
136+
- NW.1.6 (2025-07-22)
137+
- NW.1.7 (2025-07-22)
138+
- XES.1 (2025-07-22)
139+
- XES.1.1 (2025-07-22)
140+
- XFC.1.5 (2025-07-22)
141+
- XFC.1.6 (2025-07-22)
142+
- XFC.1.8 (2025-07-22)
143+
- XFC.1.9 (2025-07-22)
144+
- XFN.1 (2025-07-24)
145+
- XFN.2 (2025-07-24)
146+
- PG.3.1 (2025-07-25)
147+
- XFG.2.1 (2025-07-25)
148+
- XFG.2.2 (2025-07-25)
149+
- XFG.3.4.3 (2025-07-25)
150+
- XFG.21 (2025-07-25)
151+
- XFG.22 (2025-07-25)
152+
- LF.7.12 (2025-07-28)
153+
- LF.7.12.1 (2025-07-28)
154+
- PQ.26 (2025-07-29)
155+
- PQ.4.1 (2025-07-29)
156+
- PQ.5.1 (2025-07-29)
157+
- PQ.5.1.1 (2025-07-29)
158+
- PQ.5.1.2 (2025-07-29)
159+
- PQ.27 (2025-07-29)
160+
- PQ.28 (2025-07-29)
161+
- XFG.3.5 (2025-07-29)
162+
- XFG.3.5.1 (2025-07-29)
163+
- XFG.3.6 (2025-07-29)
164+
- XFG.3.7 (2025-07-29)
165+
- XFG.3.1.1 (2025-07-29)
166+
- XFG.3.1.2 (2025-07-29)
167+
- XFG.3.1.3 (2025-07-29)
168+
- NL.23 (2025-07-29)
169+
- NL.5.2.1 (2025-07-29)
170+
- LB.1.7.4 (2025-07-29)
171+
- LB.1.11 (2025-07-29)
172+
- LB.1.11.1 (2025-07-29)
173+
- LB.1.11.2 (2025-07-29)
174+
- XFR (2025-07-29)
175+
- XFS (2025-07-29)
176+
- QG.1 (2025-07-29)
177+
- QH.1 (2025-07-29)
178+
- XFT (2025-07-29)
179+
- XFU (2025-07-29)
180+
- QC.2.1 (2025-07-29)
181+
- QC.2.2 (2025-07-29)
182+
- QC.2.3 (2025-07-29)
183+
- QC.4.1 (2025-07-29)
184+
- QC.6 (2025-07-29)
185+
- LF.7.6.3 (2025-07-29)
186+
- LF.7.6.4 (2025-07-29)
187+
- LF.7.6.5 (2025-07-29)
188+
- LF.7.1.14 (2025-07-29)
189+
- XFG.3.3.1 (2025-07-29)
190+
- XFV (2025-07-29)
191+
- QJ.1 (2025-07-29)
192+
- QJ.2 (2025-07-29)
193+
194+
</details>
195+
1196
## 2025-06-09T15:42:38Z
2197

3198
- Add newly designated Nextstrain clade 25C (XFG)

‎data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/tree.json‎

Lines changed: 1 addition & 1 deletion
Large diffs are not rendered by default.

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