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Merge pull request #231 from nextstrain/sc2-2024-09
Update SC2 datasets
2 parents 14a367c + 58758f8 commit c2d90b0

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‎data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md‎

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## Unreleased
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- Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
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- All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates
5+
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<details>
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<summary> Newly included lineages, with designation date in parentheses</summary>
8+
9+
- XEC (2024-08-07)
10+
- KP.2.3.5 (2024-08-07)
11+
- KP.2.3.6 (2024-08-07)
12+
- LP.4 (2024-08-07)
13+
- LP.1.2 (2024-08-07)
14+
- LB.1.2.2 (2024-08-07)
15+
- LB.1.2.3 (2024-08-07)
16+
- KP.2.18 (2024-08-07)
17+
- KP.2.14.1 (2024-08-07)
18+
- MC.2 (2024-08-08)
19+
- MC.2.1 (2024-08-08)
20+
- KR.1.3 (2024-08-08)
21+
- MP.1 (2024-08-08)
22+
- MP.1.1 (2024-08-08)
23+
- JQ.2.1.2 (2024-08-08)
24+
- MC.4 (2024-08-08)
25+
- MC.3 (2024-08-08)
26+
- LB.1.3.3 (2024-08-08)
27+
- KP.2.15.1 (2024-08-08)
28+
- KP.3.1.7 (2024-08-08)
29+
- MQ.1 (2024-08-08)
30+
- MQ.2 (2024-08-08)
31+
- KP.3.3.4 (2024-08-08)
32+
- MR.1 (2024-08-08)
33+
- MK.3 (2024-08-08)
34+
- XED (2024-08-08)
35+
- LZ.2 (2024-08-12)
36+
- XEC.1 (2024-08-14)
37+
- MS.1 (2024-08-15)
38+
- KU.2.1 (2024-08-15)
39+
- KU.2.2 (2024-08-15)
40+
- MA.1.1 (2024-08-15)
41+
- MA.1.1.1 (2024-08-15)
42+
- JN.1.18.8 (2024-08-15)
43+
- JN.1.59.1 (2024-08-15)
44+
- JN.1.16.4 (2024-08-15)
45+
- LU.2.1 (2024-08-15)
46+
- LU.2.1.1 (2024-08-15)
47+
- MT.1 (2024-08-15)
48+
- KP.2.19 (2024-08-15)
49+
- LF.6 (2024-08-15)
50+
- LR.3 (2024-08-15)
51+
- XDV.1.1 (2024-08-15)
52+
- XDV.1.2 (2024-08-15)
53+
- XDV.1.2.1 (2024-08-15)
54+
- XDV.1.3 (2024-08-15)
55+
- XDV.1.4 (2024-08-15)
56+
- XDV.1.5 (2024-08-15)
57+
- XDV.1.6 (2024-08-15)
58+
- LF.7 (2024-08-15)
59+
- MU.1 (2024-08-15)
60+
- JN.1.4.9 (2024-08-15)
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- JN.1.38.1 (2024-08-15)
62+
- MC.5 (2024-08-15)
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- MC.6 (2024-08-15)
64+
- MC.7 (2024-08-15)
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- MC.8 (2024-08-15)
66+
- MC.8.1 (2024-08-15)
67+
- MC.9 (2024-08-15)
68+
- MC.10 (2024-08-15)
69+
- MC.11 (2024-08-15)
70+
- MC.11.1 (2024-08-15)
71+
- MC.12 (2024-08-15)
72+
- MC.13 (2024-08-15)
73+
- MC.13.1 (2024-08-15)
74+
- MC.14 (2024-08-15)
75+
- MC.15 (2024-08-15)
76+
- MC.16 (2024-08-15)
77+
- MB.1.1.1 (2024-08-15)
78+
- MV.1 (2024-08-15)
79+
- KP.2.20 (2024-08-15)
80+
- KP.2.20.1 (2024-08-15)
81+
- JN.1.67 (2024-08-15)
82+
- JN.1.67.1 (2024-08-15)
83+
- XEF (2024-08-15)
84+
- KP.2.22 (2024-08-16)
85+
- KP.2.24 (2024-08-16)
86+
- KP.2.25 (2024-08-16)
87+
- KP.2.26 (2024-08-16)
88+
- KR.4.1 (2024-08-16)
89+
- KP.6 (2024-08-16)
90+
- XEG (2024-08-16)
91+
- KP.2.3.7 (2024-08-16)
92+
- MW.1 (2024-08-16)
93+
- KP.2.23 (2024-08-16)
94+
- JN.1.68 (2024-08-16)
95+
- LF.8 (2024-08-16)
96+
- LF.8.1 (2024-08-16)
97+
- LF.8.1.1 (2024-08-16)
98+
- XEE (2024-08-16)
99+
- MC.17 (2024-08-16)
100+
- JN.1.16.5 (2024-08-16)
101+
- LW.1.1 (2024-08-16)
102+
- LW.1.2 (2024-08-16)
103+
- KP.3.6 (2024-08-16)
104+
- LB.1.9 (2024-08-16)
105+
- KP.3.1.8 (2024-08-16)
106+
- MY.1 (2024-08-16)
107+
- XDV.1.7 (2024-08-17)
108+
- XDV.1.8 (2024-08-17)
109+
- XDV.1.9 (2024-08-17)
110+
- XDR.1.1 (2024-08-17)
111+
- XDR.1.2 (2024-08-17)
112+
- XDV.1.10 (2024-08-17)
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- XDV.1.11 (2024-08-17)
114+
- LU.2.2 (2024-08-20)
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- LB.1.4.3 (2024-08-24)
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- LF.9 (2024-08-27)
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- LF.9.1 (2024-08-27)
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- XDV.1.7.1 (2024-09-05)
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- XDV.1.9.1 (2024-09-05)
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- LZ.2.1 (2024-09-05)
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- MZ.1 (2024-09-05)
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</details>
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## 2024-07-17T12:57:03Z
2126

3127
- Include newly designated Nextstrain clade 24C (KP.3)

‎data/nextstrain/sars-cov-2/BA.2.86/tree.json‎

Lines changed: 1 addition & 1 deletion
Large diffs are not rendered by default.

‎data/nextstrain/sars-cov-2/BA.2.86/tree.json.bak‎

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‎data/nextstrain/sars-cov-2/BA.2/CHANGELOG.md‎

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Original file line numberDiff line numberDiff line change
@@ -1,3 +1,127 @@
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## Unreleased
2+
3+
- Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
4+
- All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates
5+
6+
<details>
7+
<summary> Newly included lineages, with designation date in parentheses</summary>
8+
9+
- XEC (2024-08-07)
10+
- KP.2.3.5 (2024-08-07)
11+
- KP.2.3.6 (2024-08-07)
12+
- LP.4 (2024-08-07)
13+
- LP.1.2 (2024-08-07)
14+
- LB.1.2.2 (2024-08-07)
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- LB.1.2.3 (2024-08-07)
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- KP.2.18 (2024-08-07)
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- KP.2.14.1 (2024-08-07)
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- MC.2 (2024-08-08)
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- MC.2.1 (2024-08-08)
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- KR.1.3 (2024-08-08)
21+
- MP.1 (2024-08-08)
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- MP.1.1 (2024-08-08)
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- JQ.2.1.2 (2024-08-08)
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- MC.4 (2024-08-08)
25+
- MC.3 (2024-08-08)
26+
- LB.1.3.3 (2024-08-08)
27+
- KP.2.15.1 (2024-08-08)
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- KP.3.1.7 (2024-08-08)
29+
- MQ.1 (2024-08-08)
30+
- MQ.2 (2024-08-08)
31+
- KP.3.3.4 (2024-08-08)
32+
- MR.1 (2024-08-08)
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- MK.3 (2024-08-08)
34+
- XED (2024-08-08)
35+
- LZ.2 (2024-08-12)
36+
- XEC.1 (2024-08-14)
37+
- MS.1 (2024-08-15)
38+
- KU.2.1 (2024-08-15)
39+
- KU.2.2 (2024-08-15)
40+
- MA.1.1 (2024-08-15)
41+
- MA.1.1.1 (2024-08-15)
42+
- JN.1.18.8 (2024-08-15)
43+
- JN.1.59.1 (2024-08-15)
44+
- JN.1.16.4 (2024-08-15)
45+
- LU.2.1 (2024-08-15)
46+
- LU.2.1.1 (2024-08-15)
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- MT.1 (2024-08-15)
48+
- KP.2.19 (2024-08-15)
49+
- LF.6 (2024-08-15)
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- LR.3 (2024-08-15)
51+
- XDV.1.1 (2024-08-15)
52+
- XDV.1.2 (2024-08-15)
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- XDV.1.2.1 (2024-08-15)
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- XDV.1.3 (2024-08-15)
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- XDV.1.4 (2024-08-15)
56+
- XDV.1.5 (2024-08-15)
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- XDV.1.6 (2024-08-15)
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- LF.7 (2024-08-15)
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- MU.1 (2024-08-15)
60+
- JN.1.4.9 (2024-08-15)
61+
- JN.1.38.1 (2024-08-15)
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- MC.5 (2024-08-15)
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- MC.6 (2024-08-15)
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- MC.7 (2024-08-15)
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- MC.8 (2024-08-15)
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- MC.8.1 (2024-08-15)
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- MC.9 (2024-08-15)
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- MC.10 (2024-08-15)
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- MC.11 (2024-08-15)
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- MC.11.1 (2024-08-15)
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- MC.12 (2024-08-15)
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- MC.13 (2024-08-15)
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- MC.13.1 (2024-08-15)
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- MC.14 (2024-08-15)
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- MC.15 (2024-08-15)
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- MC.16 (2024-08-15)
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- MB.1.1.1 (2024-08-15)
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- MV.1 (2024-08-15)
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- KP.2.20 (2024-08-15)
80+
- KP.2.20.1 (2024-08-15)
81+
- JN.1.67 (2024-08-15)
82+
- JN.1.67.1 (2024-08-15)
83+
- XEF (2024-08-15)
84+
- KP.2.22 (2024-08-16)
85+
- KP.2.24 (2024-08-16)
86+
- KP.2.25 (2024-08-16)
87+
- KP.2.26 (2024-08-16)
88+
- KR.4.1 (2024-08-16)
89+
- KP.6 (2024-08-16)
90+
- XEG (2024-08-16)
91+
- KP.2.3.7 (2024-08-16)
92+
- MW.1 (2024-08-16)
93+
- KP.2.23 (2024-08-16)
94+
- JN.1.68 (2024-08-16)
95+
- LF.8 (2024-08-16)
96+
- LF.8.1 (2024-08-16)
97+
- LF.8.1.1 (2024-08-16)
98+
- XEE (2024-08-16)
99+
- MC.17 (2024-08-16)
100+
- JN.1.16.5 (2024-08-16)
101+
- LW.1.1 (2024-08-16)
102+
- LW.1.2 (2024-08-16)
103+
- KP.3.6 (2024-08-16)
104+
- LB.1.9 (2024-08-16)
105+
- KP.3.1.8 (2024-08-16)
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- MY.1 (2024-08-16)
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- XDV.1.7 (2024-08-17)
108+
- XDV.1.8 (2024-08-17)
109+
- XDV.1.9 (2024-08-17)
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- XDR.1.1 (2024-08-17)
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- XDR.1.2 (2024-08-17)
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- XDV.1.10 (2024-08-17)
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- XDV.1.11 (2024-08-17)
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- LU.2.2 (2024-08-20)
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- LB.1.4.3 (2024-08-24)
116+
- LF.9 (2024-08-27)
117+
- LF.9.1 (2024-08-27)
118+
- XDV.1.7.1 (2024-09-05)
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- XDV.1.9.1 (2024-09-05)
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- LZ.2.1 (2024-09-05)
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- MZ.1 (2024-09-05)
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</details>
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## 2024-07-17T12:57:03Z
2126

3127
- Include newly designated Nextstrain clade 24C (KP.3)

‎data/nextstrain/sars-cov-2/BA.2/tree.json‎

Lines changed: 1 addition & 1 deletion
Large diffs are not rendered by default.

‎data/nextstrain/sars-cov-2/BA.2/tree.json.bak‎

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Large diffs are not rendered by default.

‎data/nextstrain/sars-cov-2/XBB/CHANGELOG.md‎

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Original file line numberDiff line numberDiff line change
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## Unreleased
2+
3+
- Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
4+
- All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates
5+
6+
<details>
7+
<summary> Newly included lineages, with designation date in parentheses</summary>
8+
9+
- XEC (2024-08-07)
10+
- KP.2.3.5 (2024-08-07)
11+
- KP.2.3.6 (2024-08-07)
12+
- LP.4 (2024-08-07)
13+
- LP.1.2 (2024-08-07)
14+
- LB.1.2.2 (2024-08-07)
15+
- LB.1.2.3 (2024-08-07)
16+
- KP.2.18 (2024-08-07)
17+
- KP.2.14.1 (2024-08-07)
18+
- MC.2 (2024-08-08)
19+
- MC.2.1 (2024-08-08)
20+
- KR.1.3 (2024-08-08)
21+
- MP.1 (2024-08-08)
22+
- MP.1.1 (2024-08-08)
23+
- JQ.2.1.2 (2024-08-08)
24+
- MC.4 (2024-08-08)
25+
- MC.3 (2024-08-08)
26+
- LB.1.3.3 (2024-08-08)
27+
- KP.2.15.1 (2024-08-08)
28+
- KP.3.1.7 (2024-08-08)
29+
- MQ.1 (2024-08-08)
30+
- MQ.2 (2024-08-08)
31+
- KP.3.3.4 (2024-08-08)
32+
- MR.1 (2024-08-08)
33+
- MK.3 (2024-08-08)
34+
- XED (2024-08-08)
35+
- LZ.2 (2024-08-12)
36+
- XEC.1 (2024-08-14)
37+
- MS.1 (2024-08-15)
38+
- KU.2.1 (2024-08-15)
39+
- KU.2.2 (2024-08-15)
40+
- MA.1.1 (2024-08-15)
41+
- MA.1.1.1 (2024-08-15)
42+
- JN.1.18.8 (2024-08-15)
43+
- JN.1.59.1 (2024-08-15)
44+
- JN.1.16.4 (2024-08-15)
45+
- LU.2.1 (2024-08-15)
46+
- LU.2.1.1 (2024-08-15)
47+
- MT.1 (2024-08-15)
48+
- KP.2.19 (2024-08-15)
49+
- LF.6 (2024-08-15)
50+
- LR.3 (2024-08-15)
51+
- XDV.1.1 (2024-08-15)
52+
- XDV.1.2 (2024-08-15)
53+
- XDV.1.2.1 (2024-08-15)
54+
- XDV.1.3 (2024-08-15)
55+
- XDV.1.4 (2024-08-15)
56+
- XDV.1.5 (2024-08-15)
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- XDV.1.6 (2024-08-15)
58+
- LF.7 (2024-08-15)
59+
- MU.1 (2024-08-15)
60+
- JN.1.4.9 (2024-08-15)
61+
- JN.1.38.1 (2024-08-15)
62+
- MC.5 (2024-08-15)
63+
- MC.6 (2024-08-15)
64+
- MC.7 (2024-08-15)
65+
- MC.8 (2024-08-15)
66+
- MC.8.1 (2024-08-15)
67+
- MC.9 (2024-08-15)
68+
- MC.10 (2024-08-15)
69+
- MC.11 (2024-08-15)
70+
- MC.11.1 (2024-08-15)
71+
- MC.12 (2024-08-15)
72+
- MC.13 (2024-08-15)
73+
- MC.13.1 (2024-08-15)
74+
- MC.14 (2024-08-15)
75+
- MC.15 (2024-08-15)
76+
- MC.16 (2024-08-15)
77+
- MB.1.1.1 (2024-08-15)
78+
- MV.1 (2024-08-15)
79+
- KP.2.20 (2024-08-15)
80+
- KP.2.20.1 (2024-08-15)
81+
- JN.1.67 (2024-08-15)
82+
- JN.1.67.1 (2024-08-15)
83+
- XEF (2024-08-15)
84+
- KP.2.22 (2024-08-16)
85+
- KP.2.24 (2024-08-16)
86+
- KP.2.25 (2024-08-16)
87+
- KP.2.26 (2024-08-16)
88+
- KR.4.1 (2024-08-16)
89+
- KP.6 (2024-08-16)
90+
- XEG (2024-08-16)
91+
- KP.2.3.7 (2024-08-16)
92+
- MW.1 (2024-08-16)
93+
- KP.2.23 (2024-08-16)
94+
- JN.1.68 (2024-08-16)
95+
- LF.8 (2024-08-16)
96+
- LF.8.1 (2024-08-16)
97+
- LF.8.1.1 (2024-08-16)
98+
- XEE (2024-08-16)
99+
- MC.17 (2024-08-16)
100+
- JN.1.16.5 (2024-08-16)
101+
- LW.1.1 (2024-08-16)
102+
- LW.1.2 (2024-08-16)
103+
- KP.3.6 (2024-08-16)
104+
- LB.1.9 (2024-08-16)
105+
- KP.3.1.8 (2024-08-16)
106+
- MY.1 (2024-08-16)
107+
- XDV.1.7 (2024-08-17)
108+
- XDV.1.8 (2024-08-17)
109+
- XDV.1.9 (2024-08-17)
110+
- XDR.1.1 (2024-08-17)
111+
- XDR.1.2 (2024-08-17)
112+
- XDV.1.10 (2024-08-17)
113+
- XDV.1.11 (2024-08-17)
114+
- LU.2.2 (2024-08-20)
115+
- LB.1.4.3 (2024-08-24)
116+
- LF.9 (2024-08-27)
117+
- LF.9.1 (2024-08-27)
118+
- XDV.1.7.1 (2024-09-05)
119+
- XDV.1.9.1 (2024-09-05)
120+
- LZ.2.1 (2024-09-05)
121+
- MZ.1 (2024-09-05)
122+
123+
</details>
124+
1125
## 2024-07-17T12:57:03Z
2126

3127
- Include newly designated Nextstrain clade 24C (KP.3)

‎data/nextstrain/sars-cov-2/XBB/tree.json‎

Lines changed: 1 addition & 1 deletion
Large diffs are not rendered by default.

‎data/nextstrain/sars-cov-2/XBB/tree.json.bak‎

Lines changed: 1 addition & 0 deletions
Large diffs are not rendered by default.

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