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corneliusroemercorneliusroemer
committed
Ebola Zaire first attempt
chore: rebuild [skip ci] Add Ebola Sudan chore: rebuild [skip ci] Fewer examples, adapted readme chore: rebuild [skip ci] test-wnv
1 parent 0400bd4 commit e35a0b6

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‎data/nextstrain/collection.json‎

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"nextstrain/flu/h3n2/pa",
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"nextstrain/flu/h1n1pdm/pb2",
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"nextstrain/flu/h1n1pdm/pb1",
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"nextstrain/flu/h3n2/pb2"
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"nextstrain/flu/h3n2/pb2",
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"nextstrain/ebola/zaire",
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"nextstrain/ebola/sudan",
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"nextstrain/wnv/lineage-2",
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"nextstrain/wnv/lineage-1"
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]
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}

‎data/nextstrain/wnv/lineage-1/CHANGELOG.md‎

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## Unreleased
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Initial release of this dataset.

‎data/nextstrain/wnv/lineage-1/README.md‎

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# Nextclade dataset for "Sudan Ebolavirus"
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| Key | Value |
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| ---------------------- | ------------------------------------------------------------------------------- |
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| authors | [Cornelius Roemer](https://neherlab.org), [Richard Neher](https://neherlab.org) |
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| data source | Genbank |
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| nextclade dataset path | nextstrain/ebola/sudan |
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| annotation | [NC_006432.1](https://www.ncbi.nlm.nih.gov/nuccore/NC_006432) |
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| related datasets | Zaire Ebola virus: `nextstrain/ebola/zaire` |

‎data/nextstrain/wnv/lineage-1/examples.fasta‎

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‎data/nextstrain/wnv/lineage-1/genome_annotation.gff3‎

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##gff-version 3
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#!gff-spec-version 1.21
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#!processor NCBI annotwriter
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##sequence-region NC_009942.1 1 11029
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##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=11082
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NC_009942.1 RefSeq region 1 11029 . + . ID=NC_009942.1:1..11029;Dbxref=taxon:11082;country=USA;gb-acronym=WNV;gbkey=Src;genome=genomic;isolate=385-99;mol_type=genomic RNA;note=lineage 1%3B Vero cell passage 2 after isolation;strain=NY99
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NC_009942.1 RefSeq gene 97 10395 . + . gene=POLY;ID=gene-WNVNY99_gp1;gbkey=Prot;product=anchored capsid protein ancC;protein_id=YP_005097850.1
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NC_009942.1 RefSeq CDS 6916 7311 . + . ID=id-YP_009246337;Parent=gene-WNVNY99_gp1;gene=NS4BWARF4;Note=The mature peptide consists of the N-terminal portion of NS4B and the translation of the WARF4 open reading frame%2C which is only found in lineage 1 of West Nile virus%3B The existence of the protein has been shown indirectly%3B WARF4 ORF has been added and annotated with the kind help of Dr. David Karlin (Department of Zoology%2C University of Oxford%2C UK);gbkey=Prot;product=N-NS4B/WARF4;protein_id=YP_009246339.1
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NC_009942.1 RefSeq CDS 7311 7754 . + . ID=id-YP_009246337;Parent=gene-WNVNY99_gp1;gene=NS4BWARF4;Note=The mature peptide consists of the N-terminal portion of NS4B and the translation of the WARF4 open reading frame%2C which is only found in lineage 1 of West Nile virus%3B The existence of the protein has been shown indirectly%3B WARF4 ORF has been added and annotated with the kind help of Dr. David Karlin (Department of Zoology%2C University of Oxford%2C UK);gbkey=Prot;product=N-NS4B/WARF4;protein_id=YP_009246339.1
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NC_009942.1 RefSeq CDS 2470 3552 . + . ID=id-YP_006485883;Parent=gene-WNVNY99_gp1;gene=NS1prime;Note=NS1'%3B transframe fusion protein expressed via programmed ribosomal frameshifting;gbkey=Prot;product=nonstructural protein NS1 prime;protein_id=YP_009246338.1
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NC_009942.1 RefSeq CDS 3552 3680 . + . ID=id-YP_006485883;Parent=gene-WNVNY99_gp1;gene=NS1prime;Note=NS1'%3B transframe fusion protein expressed via programmed ribosomal frameshifting;gbkey=Prot;product=nonstructural protein NS1 prime;protein_id=YP_009246338.1
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NC_009942.1 RefSeq CDS 97 465 . + . gene=ancC;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=anchored capsid protein ancC;protein_id=YP_005097850.1
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NC_009942.1 RefSeq CDS 466 741 . + . gene=pr;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=protein pr;protein_id=YP_009164953.1
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NC_009942.1 RefSeq CDS 742 966 . + . gene=M;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=membrane glycoprotein M;protein_id=YP_001527879.1
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NC_009942.1 RefSeq CDS 967 2469 . + . gene=E;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=envelope protein E;protein_id=YP_001527880.1
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NC_009942.1 RefSeq CDS 2470 3525 . + . gene=NS1;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=nonstructural protein NS1;protein_id=YP_001527881.1
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NC_009942.1 RefSeq CDS 3526 4218 . + . gene=NS2A;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=nonstructural protein NS2A;protein_id=YP_001527882.1
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NC_009942.1 RefSeq CDS 4219 4611 . + . gene=NS2B;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=nonstructural protein NS2B;protein_id=YP_001527883.1
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NC_009942.1 RefSeq CDS 4612 6468 . + . gene=NS3;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=nonstructural protein NS3;protein_id=YP_001527884.1
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NC_009942.1 RefSeq CDS 6469 6846 . + . gene=NS4A;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=nonstructural protein NS4A;protein_id=YP_001527885.1
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NC_009942.1 RefSeq CDS 6847 6915 . + . gene=2K;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=protein 2K;protein_id=YP_001527885.1
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NC_009942.1 RefSeq CDS 6916 7680 . + . gene=NS4B;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=nonstructural protein NS4B;protein_id=YP_001527886.1
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NC_009942.1 RefSeq CDS 7681 10395 . + . gene=NS5;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=RNA-dependent RNA polymerase NS5;protein_id=YP_001527887.1

‎data/nextstrain/wnv/lineage-1/pathogen.json‎

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{
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"alignmentParams": {
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"excessBandwidth": 100,
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"terminalBandwidth": 300,
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"allowedMismatches": 10,
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"windowSize": 40,
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"minSeedCover": 0.03,
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"gapAlignmentSide": "left"
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},
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"attributes": {
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"name": "West Nile Virus Lineage 1",
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"reference accession": "NC_009942.1",
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"reference name": "NY99"
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},
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"compatibility": {
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"cli": "3.0.0-alpha.0",
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"web": "3.0.0-alpha.0"
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},
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"deprecated": false,
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"enabled": true,
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"experimental": true,
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"files": {
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"changelog": "CHANGELOG.md",
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"examples": "examples.fasta",
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"genomeAnnotation": "genome_annotation.gff3",
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"pathogenJson": "pathogen.json",
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"readme": "README.md",
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"reference": "reference.fasta"
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},
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"official": true,
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"qc": {
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"frameShifts": {
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"enabled": true,
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"ignoredFrameShifts": [
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],
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"scoreWeight": 20
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},
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"missingData": {
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"enabled": true,
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"missingDataThreshold": 3000,
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"scoreBias": 500
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},
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"mixedSites": {
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"enabled": true,
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"mixedSitesThreshold": 40
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},
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"privateMutations": {
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"cutoff": 300,
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"enabled": true,
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"typical": 50,
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"weightLabeledSubstitutions": 6,
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"weightReversionSubstitutions": 6,
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"weightUnlabeledSubstitutions": 1
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},
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"snpClusters": {
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"clusterCutOff": 10,
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"enabled": false,
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"scoreWeight": 10,
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"windowSize": 100
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},
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"stopCodons": {
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"enabled": true,
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"ignoredStopCodons": [
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],
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"scoreWeight": 20
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}
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},
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"schemaVersion": "3.0.0",
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"shortcuts": [
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]
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}

‎data/nextstrain/wnv/lineage-1/reference.fasta‎

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>NC_009942.1 West Nile virus lineage 1, complete genome
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AGTAGTTCGCCTGTGTGAGCTGACAAACTTAGTAGTGTTTGTGAGGATTAACAACAATTAACACAGTGCG
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AGCTGTTTCTTAGCACGAAGATCTCGATGTCTAAGAAACCAGGAGGGCCCGGCAAGAGCCGGGCTGTCAA
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TATGCTAAAACGCGGAATGCCCCGCGTGTTGTCCTTGATTGGACTGAAGAGGGCTATGTTGAGCCTGATC
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GACGGCAAGGGGCCAATACGATTTGTGTTGGCTCTCTTGGCGTTCTTCAGGTTCACAGCAATTGCTCCGA
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CCCGAGCAGTGCTGGATCGATGGAGAGGTGTGAACAAACAAACAGCGATGAAACACCTTCTGAGTTTTAA
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GAAGGAACTAGGGACCTTGACCAGTGCTATCAATCGGCGGAGCTCAAAACAAAAGAAAAGAGGAGGAAAG
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ACCGGAATTGCAGTCATGATTGGCCTGATCGCCAGCGTAGGAGCAGTTACCCTCTCTAACTTCCAAGGGA
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AGGTGATGATGACGGTAAATGCTACTGACGTCACAGATGTCATCACGATTCCAACAGCTGCTGGAAAGAA
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CCTATGCATTGTCAGAGCAATGGATGTGGGATACATGTGCGATGATACTATCACTTATGAATGCCCAGTA
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CTGTCGGCTGGTAATGATCCAGAAGACATCGACTGTTGGTGCACAAAGTCAGCAGTCTACGTCAGGTATG
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GAAGATGCACCAAGACACGCCACTCAAGACGCAGTCGGAGGTCACTGACAGTGCAGACACACGGAGAAAG
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CACTCTAGCGAACAAGAAGGGGGCTTGGATGGACAGCACCAAGGCCACAAGGTATTTGGTAAAAACAGAA
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TCATGGATCTTGAGGAACCCTGGATATGCCCTGGTGGCAGCCGTCATTGGTTGGATGCTTGGGAGCAACA
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CCATGCAGAGAGTTGTGTTTGTCGTGCTATTGCTTTTGGTGGCCCCAGCTTACAGCTTCAACTGCCTTGG
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AATGAGCAACAGAGACTTCTTGGAAGGAGTGTCTGGAGCAACATGGGTGGATTTGGTTCTCGAAGGCGAC
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AGCTGCGTGACTATCATGTCTAAGGACAAGCCTACCATCGATGTGAAGATGATGAATATGGAGGCGGCCA
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ACCTGGCAGAGGTCCGCAGTTATTGCTATTTGGCTACCGTCAGCGATCTCTCCACCAAAGCTGCGTGCCC
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GACCATGGGAGAAGCTCACAATGACAAACGTGCTGACCCAGCTTTTGTGTGCAGACAAGGAGTGGTGGAC
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AGGGGCTGGGGCAACGGCTGCGGACTATTTGGCAAAGGAAGCATTGACACATGCGCCAAATTTGCCTGCT
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CTACCAAGGCAATAGGAAGAACCATCTTGAAAGAGAATATCAAGTACGAAGTGGCCATTTTTGTCCATGG
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ACCAACTACTGTGGAGTCGCACGGAAACTACTCCACACAGGTTGGAGCCACTCAGGCAGGGAGACTCAGC
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ATCACTCCTGCGGCGCCTTCATACACACTAAAGCTTGGAGAATATGGAGAGGTGACAGTGGACTGTGAAC
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CACGGTCAGGGATTGACACCAATGCATACTACGTGATGACTGTTGGAACAAAGACGTTCTTGGTCCATCG
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TGAGTGGTTCATGGACCTCAACCTCCCTTGGAGCAGTGCTGGAAGTACTGTGTGGAGGAACAGAGAGACG
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TTAATGGAGTTTGAGGAACCACACGCCACGAAGCAGTCTGTGATAGCATTGGGCTCACAAGAGGGAGCTC
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TGCATCAAGCTTTGGCTGGAGCCATTCCTGTGGAATTTTCAAGCAACACTGTCAAGTTGACGTCGGGTCA
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TTTGAAGTGTAGAGTGAAGATGGAAAAATTGCAGTTGAAGGGAACAACCTATGGCGTCTGTTCAAAGGCT
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TTCAAGTTTCTTGGGACTCCCGCAGACACAGGTCACGGCACTGTGGTGTTGGAATTGCAGTACACTGGCA
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CGGATGGACCTTGCAAAGTTCCTATCTCGTCAGTGGCTTCATTGAACGACCTAACGCCAGTGGGCAGATT
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GGTCACTGTCAACCCTTTTGTTTCAGTGGCCACGGCCAACGCTAAGGTCCTGATTGAATTGGAACCACCC
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TTTGGAGACTCATACATAGTGGTGGGCAGAGGAGAACAACAGATCAATCACCATTGGCACAAGTCTGGAA
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GCAGCATTGGCAAAGCCTTTACAACCACCCTCAAAGGAGCGCAGAGACTAGCCGCTCTAGGAGACACAGC
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TTGGGACTTTGGATCAGTTGGAGGGGTGTTCACCTCAGTTGGGAAGGCTGTCCATCAAGTGTTCGGAGGA
35+
GCATTCCGCTCACTGTTCGGAGGCATGTCCTGGATAACGCAAGGATTGCTGGGGGCTCTCCTGTTGTGGA
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TGGGCATCAATGCTCGTGATAGGTCCATAGCTCTCACGTTTCTCGCAGTTGGAGGAGTTCTGCTCTTCCT
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CTCCGTGAACGTGCACGCTGACACTGGGTGTGCCATAGACATCAGCCGGCAAGAGCTGAGATGTGGAAGT
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GGAGTGTTCATACACAATGATGTGGAGGCTTGGATGGACCGGTACAAGTATTACCCTGAAACGCCACAAG
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GCCTAGCCAAGATCATTCAGAAAGCTCATAAGGAAGGAGTGTGCGGTCTACGATCAGTTTCCAGACTGGA
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GCATCAAATGTGGGAAGCAGTGAAGGACGAGCTGAACACTCTTTTGAAGGAGAATGGTGTGGACCTTAGT
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GTCGTGGTTGAGAAACAGGAGGGAATGTACAAGTCAGCACCTAAACGCCTCACCGCCACCACGGAAAAAT
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TGGAAATTGGCTGGAAGGCCTGGGGAAAGAGTATTTTATTTGCACCAGAACTCGCCAACAACACCTTTGT
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GGTTGATGGTCCGGAGACCAAGGAATGTCCGACTCAGAATCGCGCTTGGAATAGCTTAGAAGTGGAGGAT
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TTTGGATTTGGTCTCACCAGCACTCGGATGTTCCTGAAGGTCAGAGAGAGCAACACAACTGAATGTGACT
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CGAAGATCATTGGAACGGCTGTCAAGAACAACTTGGCGATCCACAGTGACCTGTCCTATTGGATTGAAAG
46+
CAGGCTCAATGATACGTGGAAGCTTGAAAGGGCAGTTCTGGGTGAAGTCAAATCATGTACGTGGCCTGAG
47+
ACGCATACCTTGTGGGGCGATGGAATCCTTGAGAGTGACTTGATAATACCAGTCACACTGGCGGGACCAC
48+
GAAGCAATCACAATCGGAGACCTGGGTACAAGACACAAAACCAGGGCCCATGGGACGAAGGCCGGGTAGA
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GATTGACTTCGATTACTGCCCAGGAACTACGGTCACCCTGAGTGAGAGCTGCGGACACCGTGGACCTGCC
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ACTCGCACCACCACAGAGAGCGGAAAGTTGATAACAGATTGGTGCTGCAGGAGCTGCACCTTACCACCAC
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TGCGCTACCAAACTGACAGCGGCTGTTGGTATGGTATGGAGATCAGACCACAGAGACATGATGAAAAGAC
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CCTCGTGCAGTCACAAGTGAATGCTTATAATGCTGATATGATTGACCCTTTTCAGTTGGGCCTTCTGGTC
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GTGTTCTTGGCCACCCAGGAGGTCCTTCGCAAGAGGTGGACAGCCAAGATCAGCATGCCAGCTATACTGA
54+
TTGCTCTGCTAGTCCTGGTGTTTGGGGGCATTACTTACACTGATGTGTTACGCTATGTCATCTTGGTGGG
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GGCAGCTTTCGCAGAATCTAATTCGGGAGGAGACGTGGTACACTTGGCGCTCATGGCGACCTTCAAGATA
56+
CAACCAGTGTTTATGGTGGCATCGTTTCTCAAAGCGAGATGGACCAACCAGGAGAACATTTTGTTGATGT
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TGGCGGCTGTTTTCTTTCAAATGGCTTATCACGATGCCCGCCAAATTCTGCTCTGGGAGATCCCTGATGT
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GTTGAATTCACTGGCGGTAGCTTGGATGATACTGAGAGCCATAACATTCACAACGACATCAAACGTGGTT
59+
GTTCCGCTGCTAGCCCTGCTAACACCCGGGCTGAGATGCTTGAATCTGGATGTGTACAGGATACTGCTGT
60+
TGATGGTCGGAATAGGCAGCTTGATCAGGGAGAAGAGGAGTGCAGCCGCAAAAAAGAAAGGAGCAAGTCT
61+
GCTATGCTTGGCTCTAGCCTCAACAGGACTTTTCAACCCCATGATCCTTGCTGCTGGACTGATTGCATGT
62+
GATCCCAACCGTAAACGCGGATGGCCCGCAACTGAAGTGATGACAGCTGTCGGCCTAATGTTTGCCATCG
63+
TCGGAGGGCTGGCAGAGCTTGACATTGACTCCATGGCCATTCCAATGACTATCGCGGGGCTCATGTTTGC
64+
TGCTTTCGTGATTTCTGGGAAATCAACAGATATGTGGATTGAGAGAACGGCGGACATTTCCTGGGAAAGT
65+
GATGCAGAAATTACAGGCTCGAGCGAAAGAGTTGATGTGCGGCTTGATGATGATGGAAACTTCCAGCTCA
66+
TGAATGATCCAGGAGCACCTTGGAAGATATGGATGCTCAGAATGGTCTGTCTCGCGATTAGTGCGTACAC
67+
CCCCTGGGCAATCTTGCCCTCAGTAGTTGGATTTTGGATAACTCTCCAATACACAAAGAGAGGAGGCGTG
68+
TTGTGGGACACTCCCTCACCAAAGGAGTACAAAAAGGGGGACACGACCACCGGCGTCTACAGGATCATGA
69+
CTCGTGGGCTGCTCGGCAGTTATCAAGCAGGAGCGGGCGTGATGGTTGAAGGTGTTTTCCACACCCTTTG
70+
GCATACAACAAAAGGAGCCGCTTTGATGAGCGGAGAGGGCCGCCTGGACCCATACTGGGGCAGTGTCAAG
71+
GAGGATCGACTTTGTTACGGAGGACCCTGGAAATTGCAGCACAAGTGGAACGGGCAGGATGAGGTGCAGA
72+
TGATTGTGGTGGAACCTGGCAAGAACGTTAAGAACGTCCAGACGAAACCAGGGGTGTTCAAAACACCTGA
73+
AGGAGAAATCGGGGCCGTGACTTTGGACTTCCCCACTGGAACATCAGGCTCACCAATAGTGGACAAAAAC
74+
GGTGATGTGATTGGGCTTTATGGCAATGGAGTCATAATGCCCAACGGCTCATACATAAGCGCGATAGTGC
75+
AGGGTGAAAGGATGGATGAGCCAATCCCAGCCGGATTCGAACCTGAGATGCTGAGGAAAAAACAGATCAC
76+
TGTACTGGATCTCCATCCCGGCGCCGGTAAAACAAGGAGGATTCTGCCACAGATCATCAAAGAGGCCATA
77+
AACAGAAGACTGAGAACAGCCGTGCTAGCGCCAACCAGGGTTGTGGCTGCTGAGATGGCTGAAGCACTGA
78+
GAGGACTGCCCATCCGGTACCAGACATCCGCAGTGCCCAGAGAACATAATGGAAATGAGATTGTTGATGT
79+
CATGTGTCATGCTACCCTCACCCACAGGCTGATGTCTCCTCACAGGGTGCCGAACTACAACCTGTTCGTG
80+
ATGGATGAGGCTCATTTCACCGACCCAGCTAGCATTGCAGCAAGAGGTTACATTTCCACAAAGGTCGAGC
81+
TAGGGGAGGCGGCGGCAATATTCATGACAGCCACCCCACCAGGCACTTCAGATCCATTCCCAGAGTCCAA
82+
TTCACCAATTTCCGACTTACAGACTGAGATCCCGGATCGAGCTTGGAACTCTGGATACGAATGGATCACA
83+
GAATACACCGGGAAGACGGTTTGGTTTGTGCCTAGTGTCAAGATGGGGAATGAGATTGCCCTTTGCCTAC
84+
AACGTGCTGGAAAGAAAGTAGTCCAATTGAACAGAAAGTCGTACGAGACGGAGTACCCAAAATGTAAGAA
85+
CGATGATTGGGACTTTGTTATCACAACAGACATATCTGAAATGGGGGCTAACTTCAAGGCGAGCAGGGTG
86+
ATTGACAGCCGGAAGAGTGTGAAACCAACCATCATAACAGAAGGAGAAGGGAGAGTGATCCTGGGAGAAC
87+
CATCTGCAGTGACAGCAGCTAGTGCCGCCCAGAGACGTGGACGTATCGGTAGAAATCCGTCGCAAGTTGG
88+
TGATGAGTACTGTTATGGGGGGCACACGAATGAAGACGACTCGAACTTCGCCCATTGGACTGAGGCACGA
89+
ATCATGCTGGACAACATCAACATGCCAAACGGACTGATCGCTCAATTCTACCAACCAGAGCGTGAGAAGG
90+
TATATACCATGGATGGGGAATACCGGCTCAGAGGAGAAGAGAGAAAAAACTTTCTGGAACTGTTGAGGAC
91+
TGCAGATCTGCCAGTTTGGCTGGCTTACAAGGTTGCAGCGGCTGGAGTGTCATACCACGACCGGAGGTGG
92+
TGCTTTGATGGTCCTAGGACAAACACAATTTTAGAAGACAACAACGAAGTGGAAGTCATCACGAAGCTTG
93+
GTGAAAGGAAGATTCTGAGGCCGCGCTGGATTGATGCCAGGGTGTACTCGGATCACCAGGCACTAAAGGC
94+
GTTCAAGGACTTCGCCTCGGGAAAACGTTCTCAGATAGGGCTCATTGAGGTTCTGGGAAAGATGCCTGAG
95+
CACTTCATGGGGAAGACATGGGAAGCACTTGACACCATGTACGTTGTGGCCACTGCAGAGAAAGGAGGAA
96+
GAGCTCACAGAATGGCCCTGGAGGAACTGCCAGATGCTCTTCAGACAATTGCCTTGATTGCCTTATTGAG
97+
TGTGATGACCATGGGAGTATTCTTCCTCCTCATGCAGCGGAAGGGCATTGGAAAGATAGGTTTGGGAGGC
98+
GCTGTCTTGGGAGTCGCGACCTTTTTCTGTTGGATGGCTGAAGTTCCAGGAACGAAGATCGCCGGAATGT
99+
TGCTGCTCTCCCTTCTCTTGATGATTGTGCTAATTCCTGAGCCAGAGAAGCAACGTTCGCAGACAGACAA
100+
CCAGCTAGCCGTGTTCCTGATTTGTGTCATGACCCTTGTGAGCGCAGTGGCAGCCAACGAGATGGGTTGG
101+
CTAGATAAGACCAAGAGTGACATAAGCAGTTTGTTTGGGCAAAGAATTGAGGTCAAGGAGAATTTCAGCA
102+
TGGGAGAGTTTCTTCTGGACTTGAGGCCGGCAACAGCCTGGTCACTGTACGCTGTGACAACAGCGGTCCT
103+
CACTCCACTGCTAAAGCATTTGATCACGTCAGATTACATCAACACCTCATTGACCTCAATAAACGTTCAG
104+
GCAAGTGCACTATTCACACTCGCGCGAGGCTTCCCCTTCGTCGATGTTGGAGTGTCGGCTCTCCTGCTAG
105+
CAGCCGGATGCTGGGGACAAGTCACCCTCACCGTTACGGTAACAGCGGCAACACTCCTTTTTTGCCACTA
106+
TGCCTACATGGTTCCCGGTTGGCAAGCTGAGGCAATGCGCTCAGCCCAGCGGCGGACAGCGGCCGGAATC
107+
ATGAAGAACGCTGTAGTGGATGGCATCGTGGCCACGGACGTCCCAGAATTAGAGCGCACCACACCCATCA
108+
TGCAGAAGAAAGTTGGACAGATCATGCTGATCTTGGTGTCTCTAGCTGCAGTAGTAGTGAACCCGTCTGT
109+
GAAGACAGTACGAGAAGCCGGAATTTTGATCACGGCCGCAGCGGTGACGCTTTGGGAGAATGGAGCAAGC
110+
TCTGTTTGGAACGCAACAACTGCCATCGGACTCTGCCACATCATGCGTGGGGGTTGGTTGTCATGTCTAT
111+
CCATAACATGGACACTCATAAAGAACATGGAAAAACCAGGACTAAAAAGAGGTGGGGCAAAAGGACGCAC
112+
CTTGGGAGAGGTTTGGAAAGAAAGACTCAACCAGATGACAAAAGAAGAGTTCACTAGGTACCGCAAAGAG
113+
GCCATCATCGAAGTCGATCGCTCAGCGGCAAAACACGCCAGGAAAGAAGGCAATGTCACTGGAGGGCATC
114+
CAGTCTCTAGGGGCACAGCAAAACTGAGATGGCTGGTCGAACGGAGGTTTCTCGAACCGGTCGGAAAAGT
115+
GATTGACCTTGGATGTGGAAGAGGCGGTTGGTGTTACTATATGGCAACCCAAAAAAGAGTCCAAGAAGTC
116+
AGAGGGTACACAAAGGGCGGTCCCGGACATGAAGAGCCCCAACTAGTGCAAAGTTATGGATGGAACATTG
117+
TCACCATGAAGAGTGGAGTGGATGTGTTCTACAGACCTTCTGAGTGTTGTGACACCCTCCTTTGTGACAT
118+
CGGAGAGTCCTCGTCAAGTGCTGAGGTTGAAGAGCATAGGACGATTCGGGTCCTTGAAATGGTTGAGGAC
119+
TGGCTGCACCGAGGGCCAAGGGAATTTTGCGTGAAGGTGCTCTGTCCCTACATGCCGAAAGTCATAGAGA
120+
AGATGGAGCTGCTCCAACGCCGGTATGGGGGGGGACTGGTCAGAAACCCACTCTCACGGAATTCCACGCA
121+
CGAGATGTATTGGGTGAGTCGAGCTTCAGGCAATGTGGTACATTCAGTGAATATGACCAGCCAGGTGCTC
122+
CTAGGAAGAATGGAAAAAAGGACCTGGAAGGGACCCCAATACGAGGAAGATGTAAACTTGGGAAGTGGAA
123+
CCAGGGCGGTGGGAAAACCCCTGCTCAACTCAGACACCAGTAAAATCAAGAACAGGATTGAACGACTCAG
124+
GCGTGAGTACAGTTCGACGTGGCACCACGATGAGAACCACCCATATAGAACCTGGAACTATCACGGCAGT
125+
TATGATGTGAAGCCCACAGGCTCCGCCAGTTCGCTGGTCAATGGAGTGGTCAGGCTCCTCTCAAAACCAT
126+
GGGACACCATCACGAATGTTACCACCATGGCCATGACTGACACTACTCCCTTCGGGCAGCAGCGAGTGTT
127+
CAAAGAGAAGGTGGACACGAAAGCTCCTGAACCGCCAGAAGGAGTGAAGTACGTGCTCAACGAGACCACC
128+
AACTGGTTGTGGGCGTTTTTGGCCAGAGAAAAACGTCCCAGAATGTGCTCTCGAGAGGAATTCATAAGAA
129+
AGGTCAACAGCAATGCAGCTTTGGGTGCCATGTTTGAAGAGCAGAATCAATGGAGGAGCGCCAGAGAAGC
130+
AGTTGAAGATCCAAAATTTTGGGAGATGGTGGATGAGGAGCGCGAGGCACATCTGCGGGGGGAATGTCAC
131+
ACTTGCATTTACAACATGATGGGAAAGAGAGAGAAAAAACCCGGAGAGTTCGGAAAGGCCAAGGGAAGCA
132+
GAGCCATTTGGTTCATGTGGCTCGGAGCTCGCTTTCTGGAGTTCGAGGCTCTGGGTTTTCTCAATGAAGA
133+
CCACTGGCTTGGAAGAAAGAACTCAGGAGGAGGTGTCGAGGGCTTGGGCCTCCAAAAACTGGGTTACATC
134+
CTGCGTGAAGTTGGCACCCGGCCTGGGGGCAAGATCTATGCTGATGACACAGCTGGCTGGGACACCCGCA
135+
TCACGAGAGCTGACTTGGAAAATGAAGCTAAGGTGCTTGAGCTGCTTGATGGGGAACATCGGCGTCTTGC
136+
CAGGGCCATCATTGAGCTCACCTATCGTCACAAAGTTGTGAAAGTGATGCGCCCGGCTGCTGATGGAAGA
137+
ACCGTCATGGATGTTATCTCCAGAGAAGATCAGAGGGGGAGTGGACAAGTTGTCACCTACGCCCTAAACA
138+
CTTTCACCAACCTGGCCGTCCAGCTGGTGAGGATGATGGAAGGGGAAGGAGTGATTGGCCCAGATGATGT
139+
GGAGAAACTCACAAAAGGGAAAGGACCCAAAGTCAGGACCTGGCTGTTTGAGAATGGGGAAGAAAGACTC
140+
AGCCGCATGGCTGTCAGTGGAGATGACTGTGTGGTAAAGCCCCTGGACGATCGCTTTGCCACCTCGCTCC
141+
ACTTCCTCAATGCTATGTCAAAGGTTCGCAAAGACATCCAAGAGTGGAAACCGTCAACTGGATGGTATGA
142+
TTGGCAGCAGGTTCCATTTTGCTCAAACCATTTCACTGAATTGATCATGAAAGATGGAAGAACACTGGTG
143+
GTTCCATGCCGAGGACAGGATGAATTGGTAGGCAGAGCTCGCATATCTCCAGGGGCCGGATGGAACGTCC
144+
GCGACACTGCTTGTCTGGCTAAGTCTTATGCCCAGATGTGGCTGCTTCTGTACTTCCACAGAAGAGACCT
145+
GCGGCTCATGGCCAACGCCATTTGCTCCGCTGTCCCTGTGAATTGGGTCCCTACCGGAAGAACCACGTGG
146+
TCCATCCATGCAGGAGGAGAGTGGATGACAACAGAGGACATGTTGGAGGTCTGGAACCGTGTTTGGATAG
147+
AGGAGAATGAATGGATGGAAGACAAAACCCCAGTGGAGAAATGGAGTGACGTCCCATATTCAGGAAAACG
148+
AGAGGACATCTGGTGTGGCAGCCTGATTGGCACAAGAGCCCGAGCCACGTGGGCAGAAAACATCCAGGTG
149+
GCTATCAACCAAGTCAGAGCAATCATCGGAGATGAGAAGTATGTGGACTACATGAGTTCACTAAAGAGAT
150+
ATGAAGACACAACTTTGGTTGAGGACACAGTACTGTAGATATTTAATCAATTGTAAATAGACAATATAAG
151+
TATGCATAAAAGTGTAGTTTTATAGTAGTATTTAGTGGTGTTAGTGTAAATAGTTAAGAAAATTTTGAGG
152+
AGAAAGTCAGGCCGGGAAGTTCCCGCCACCGGAAGTTGAGTAGACGGTGCTGCCTGCGACTCAACCCCAG
153+
GAGGACTGGGTGAACAAAGCCGCGAAGTGATCCATGTAAGCCCTCAGAACCGTCTCGGAAGGAGGACCCC
154+
ACATGTTGTAACTTCAAAGCCCAATGTCAGACCACGCTACGGCGTGCTACTCTGCGGAGAGTGCAGTCTG
155+
CGATAGTGCCCCAGGAGGACTGGGTTAACAAAGGCAAACCAACGCCCCACGCGGCCCTAGCCCCGGTAAT
156+
GGTGTTAACCAGGGCGAAAGGACTAGAGGTTAGAGGAGACCCCGCGGTTTAAAGTGCACGGCCCAGCCTG
157+
GCTGAAGCTGTAGGTCAGGGGAAGGACTAGAGGTTAGTGGAGACCCCGTGCCACAAAACACCACAACAAA
158+
ACAGCATATTGACACCTGGGATAGACTAGGAGATCTTCTGCTCTGCACAACCAGCCACACGGCACAGTGC
159+
GCCGACAATGGTGGCTGGTGGTGCGAGAACACAGGATCT

‎data/nextstrain/wnv/lineage-2/CHANGELOG.md‎

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## Unreleased
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Initial release of this dataset.

‎data/nextstrain/wnv/lineage-2/README.md‎

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# Nextclade dataset for "Zaire Ebolavirus"
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| Key | Value |
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| ---------------------- | ------------------------------------------------------------------------------- |
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| authors | [Cornelius Roemer](https://neherlab.org), [Richard Neher](https://neherlab.org) |
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| data source | Genbank |
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| nextclade dataset path | nextstrain/ebola/zaire |
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| annotation | [NC_002549.1](https://www.ncbi.nlm.nih.gov/nuccore/NC_002549) |
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| related datasets | Sudan Ebolavirus: `nextstrain/ebola/zaire` |

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