Initial upload of CVA16 dataset#412

Merged

ivan-aksamentov merged 14 commits into

Apr 22, 2026

Commits on Apr 22, 2026

Initial upload of CVA16 dataset

nneune
authored and
ivan-aksamentov
committed
fix: rename recombinant branch to "RFs"

nneune
authored and
ivan-aksamentov
committed
fix: pathogen issues

nneune
authored and
ivan-aksamentov
committed
fix links in dataset description

nneune
authored and
ivan-aksamentov
committed
fix author links

nneune
authored and
ivan-aksamentov
committed
fix typos and missing line endings

nneune
authored and
ivan-aksamentov
committed
fix: clade B2 was replaced by C

nneune
authored and
ivan-aksamentov
committed
fix: remove nucMutLabelMapReverse and divergence qc

nneune
authored and
ivan-aksamentov
committed
Increase minSeedCover, and privateMutations thresholds and use ancestral squence instead of prototype reference.

nneune
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ivan-aksamentov
committed
Update data/enpen/enterovirus/cva16/README.md

authored and
ivan-aksamentov
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update README: dataset uses ancestral sequence as reference. Remove reference from title

nneune
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ivan-aksamentov
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update README: clarify reference terminology for ancestral sequence

nneune
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ivan-aksamentov
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update README: mention ongoing improvements for multiple virus assignment

nneune
authored and
ivan-aksamentov
committed
chore: rebuild [skip ci]
nextstrain-bot
committed