diff --git a/data/community/itps/orov/L/refseq/pathogen.json b/data/community/itps/orov/L/refseq/pathogen.json index a89eff4f9..7684c446d 100644 --- a/data/community/itps/orov/L/refseq/pathogen.json +++ b/data/community/itps/orov/L/refseq/pathogen.json @@ -7,25 +7,13 @@ "attributes": { "name": "orov/L/refseq", "reference accession": "NC_005776.1", - "reference name": "Oropouche virus, L segment" + "reference name": "Oropouche virus, L segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 43 - }, - { - "begin": 6796, - "end": 6846 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data/community/itps/orov/L/refseq/tree.json b/data/community/itps/orov/L/refseq/tree.json index 8052bdbde..ad107fe9f 100644 --- a/data/community/itps/orov/L/refseq/tree.json +++ b/data/community/itps/orov/L/refseq/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -85,7 +85,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 43 + }, + { + "begin": 6796, + "end": 6846 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -10338,4 +10352,4 @@ "L": "MSQLLLNQYRNRILHCREPEIAKDIWRDLLNDRHNYFSREFCRAANLEYRNDVPAEDICAEVLDGYKARKVRFCTPDNYLLHDGKMYIIDFKVSVDDRSSRITREKYNEIFGEVFNPEGVDFEIVIIRLDPSNMTIHVDSRDFVNTIGPITLNISMQWFFDMKDFLFGKFRDDDKFHAIISQGEFTMTLPWIEEDTPELLTHPIYNEFMSSMPEAEQALFKEALEFKSFGAEKWNIFLKGVMSKYGEYYKEFTKGHAHSIFLTTGDYPKPDKDQISAGWREMVNRVSSERDMSNDINQEKPSMHFIWAKNDSNSNNNIQKLIKLSKSLQAMSGTGSYVNAFKSLGRLMDISSDVKKYESFCGKLKSLARSSIKKLDRKIEPIQIGTATVLWEQQFKLDTDVIKREDRIHLMKDYLGIGKHKSFSKKLNNDINTDKPKILNFNNDDIVRKCKDKYNQVIHNLSQINELDKIGNYLEHFSAKISACSVEMWDFIYNTTKTKYWQCINDYSTLMKNMLAVSQYNRHNTFRIVSCANNNVFGLVMPSSDIKTKKATLVYAIMALHNEEAEIAELGSLYSTFKTATGYISISKAFRLDKERCQRIVSSPGLFLMTSCLLFNGNKSLEFDKLLGFSFFTSISITKAMLSLTEPSRYMIMNSLAVSSHVREYISEKFSPYTKTSFSVVMTDLIKKGCYSAYEQRKKVQIRDIKLTDYDITQKGVDSKRDLKSIWFPGKVNLKEYLNQIYLPFYFNSKGLHEKHHVLIDLAKTVLEIEKEQRESLPEPWSEIPAKRLSLNVLIYSLQELNLDTSRHNFVRSRVENANNFNRSITTISTFTSSKSCIKIGDFEEEKREKLRMIQKKLAKDISKLTIANPAFLDEITNEHEIRHSTYEDLKQSIPDYTDYMSVKVFDRLYEKITTNEINDKETVKLILETMKKHKIFHFGFFNKGQKTAKDREIFLGEFEAKMCLYLVERIAKERCKLNPEEMISEPGDSKLRVLEKQSEDEIRYISNTIKTLGNAIENLQSGSLNWADICENKARGLKIEINADMSKWSAQDVLFKYFWLIVLDPILYPAERKRIIYFLCNYMQKRLIMPDELLTTILDQRVPYSNDIIGLMTNNYRSNTVEIKRNWLQGNLNYTSSYLHSCSMSVYKDIIREAAILLEGEALVNSMVHSDDNQTSICMVQNKLPDDNIIEFCIKIFEKICLTFGNQANMKKTYLTNFIKEFVSLFNIHGEPFSIYGRFLLTAVGDCAYLGPYEDLASRLSATQTAIKHGCPPSLAWVSIALNHWITHTTYNMLPGQNNDPLPFFPTNNRSEIPVEMCGILESDLSTIALTGLEAGNVTFLTNIARKLSSPILQRESIQDQYNSIEKWDLSKLSQIDILRLKMLRYISLDSSVTSDDGMGETSEMRSRSLLTPRKFTTSGSLNRLKSYKDFQDIIADEDKTNELFENFIRHPELLVTKGETFEEFVNTILFRYNSKKFKESLSIQNPAQLFIEQILFSNKPVIDYTSIHDKIFGLQDMPGIEELDTIIGRKTFVESYVQIVDDLSNLTLDINDVKTIFAFCLMNDPLLITSANNIIMSVKGHSQERIGQSACKMPEVRSLKLIHYSPAVVLRAYVRGPTNVPNVDIDELARDLSHLEDFIQSTKLRENMRERIEINEKRHLGRDFKFEIKELTRFYQVCYDYIKSTEHKVKVFILPYKVFTSIEFCGALTGNLINDKLWYITHYLKNIVSTTHKAQISSSPELELQIADEALRLVAHFADTFLASESRIQFLKKIIEEFTYKGIPVKHLYSKIKNSKLRVKFLGILLWLDDLTQNDLDKFDADKSDEKIIWNNWQVSRDMNTGPIDLMISGYSRQLRITGEDDKLIAAELQVTRLSEDLIYRHGQAMLNKPHGLKLEKMQPVTEMSKRLHYIVFQQRSRKRYFYSILPTQVIEDHNSRVESSRLSRDSKWVPVCPVAISKLYQQGRPILSKVRNLNMQTHSLSRIQVNVDEYAITRRAHFQKMPFFEGPSIPSGGMDLSELMKSTSLLSLNYDNIKNASLLDMSRVFKCNGSGDDQMAFEFLSDEILEQDVVEEIECNPIFSISYTKRGESNMTYKNAFHKALISECDKFEEAFDFLDMGFCSNENLSILEEIHWIISYLKTNQWSTELDNCIHMCMYRNGYDAEYHKFDIPSKFLKDPINRTINWTEVIEFILLIEDFQTKIEPWSSMKSHFCSKAHSVALECMKNEKRSLAEFVDKSKKTGKSKFDF*", "nuc": "AGTAGTGTGCTCCTATTCCGAAACAAACAAAAACAATCTCAAAATGTCACAACTGTTGCTCAACCAATATCGGAATAGGATATTGCACTGCCGTGAACCTGAGATAGCAAAGGATATATGGCGAGATCTATTAAATGATCGACACAATTACTTTTCTCGGGAATTTTGCAGAGCTGCAAATCTTGAGTACAGAAATGATGTTCCTGCTGAGGATATTTGTGCTGAAGTTCTTGATGGTTATAAAGCAAGGAAAGTTCGCTTTTGTACACCTGATAATTACTTACTACATGATGGAAAGATGTATATAATAGACTTCAAAGTGTCTGTAGACGACCGATCTTCTAGAATCACAAGGGAGAAATATAATGAGATTTTTGGAGAGGTATTCAATCCAGAAGGTGTAGATTTTGAAATTGTTATTATTAGATTAGATCCTTCAAATATGACGATACATGTGGACTCTCGAGATTTCGTGAATACAATTGGGCCGATTACATTAAACATTAGTATGCAATGGTTTTTTGATATGAAAGACTTCTTGTTCGGGAAATTTCGGGATGATGATAAATTCCATGCTATAATAAGTCAAGGAGAATTCACAATGACATTGCCATGGATTGAAGAAGACACCCCAGAATTGCTTACTCATCCTATATACAATGAATTCATGAGTTCAATGCCAGAGGCAGAACAGGCCCTATTCAAGGAAGCATTGGAATTCAAATCATTTGGGGCAGAAAAATGGAATATCTTTTTGAAGGGGGTGATGTCAAAGTATGGTGAATATTATAAAGAATTTACTAAAGGACATGCTCATTCTATATTTCTGACAACAGGGGACTACCCCAAGCCAGACAAAGACCAAATTTCAGCAGGTTGGAGAGAAATGGTAAACAGAGTAAGCTCTGAACGTGACATGTCAAATGACATAAATCAGGAAAAACCAAGCATGCATTTTATATGGGCAAAGAATGATTCAAATAGCAACAATAATATACAAAAGCTAATCAAACTATCTAAATCACTGCAAGCTATGAGCGGGACAGGGAGCTATGTAAATGCTTTCAAGTCATTAGGGAGATTAATGGATATATCATCAGATGTTAAAAAATATGAATCATTTTGTGGGAAATTGAAATCTCTGGCAAGGTCTAGTATAAAAAAACTTGACAGGAAAATAGAGCCAATACAAATTGGGACTGCAACTGTCTTATGGGAACAGCAATTTAAACTAGATACAGATGTTATAAAAAGAGAAGACAGAATACATTTAATGAAAGATTATCTTGGGATCGGTAAGCACAAATCATTTTCAAAGAAATTAAACAACGACATAAATACTGATAAGCCTAAAATATTAAATTTCAACAATGATGATATAGTCAGGAAATGCAAAGATAAATATAATCAAGTCATACATAACCTATCCCAAATCAATGAATTAGATAAGATTGGAAACTACCTAGAGCACTTTTCAGCTAAAATTAGTGCCTGCAGTGTAGAAATGTGGGATTTTATATATAATACAACCAAAACTAAATACTGGCAATGCATCAATGACTATTCCACCCTAATGAAAAACATGTTAGCTGTCTCTCAATATAATAGACACAATACGTTTAGAATTGTCTCATGTGCAAACAATAATGTATTTGGTCTAGTAATGCCAAGCTCAGATATAAAGACAAAAAAAGCAACTTTAGTCTATGCAATAATGGCTCTCCATAATGAGGAGGCAGAAATAGCAGAACTTGGCTCACTCTACTCAACTTTTAAGACAGCAACAGGATATATTTCAATATCAAAGGCTTTTAGGCTGGATAAAGAAAGATGCCAACGCATAGTATCCTCTCCAGGCTTGTTCCTCATGACAAGCTGCCTATTATTCAACGGTAACAAGAGTTTAGAATTTGATAAATTACTAGGATTTTCATTTTTTACGTCAATATCAATTACGAAAGCTATGCTCTCCCTTACTGAGCCTTCACGTTATATGATCATGAACTCGTTAGCAGTTTCCAGCCATGTAAGAGAGTATATATCTGAAAAATTCTCCCCTTATACAAAAACATCATTTTCTGTGGTAATGACAGACTTAATCAAGAAGGGTTGCTATTCAGCATATGAACAGAGAAAAAAAGTACAAATAAGAGACATAAAATTAACAGATTATGATATAACACAAAAGGGAGTGGATTCCAAAAGAGATCTTAAATCTATTTGGTTCCCAGGAAAGGTAAACCTGAAAGAATATTTAAACCAAATTTATCTACCATTTTATTTTAACTCTAAAGGATTACATGAAAAACATCATGTCTTGATAGATTTGGCTAAAACAGTACTAGAAATCGAAAAAGAGCAAAGGGAGTCATTACCTGAGCCATGGTCAGAGATACCTGCTAAGCGACTGTCACTTAATGTTTTAATTTACTCATTGCAGGAACTGAATTTAGATACTTCAAGACATAATTTTGTAAGAAGCCGGGTGGAAAACGCAAATAATTTCAACAGATCTATAACGACAATATCTACTTTTACCAGCTCAAAATCATGCATTAAGATTGGTGATTTTGAAGAAGAAAAAAGAGAAAAACTAAGAATGATACAAAAGAAACTTGCAAAGGATATTTCTAAATTAACCATAGCCAACCCAGCATTCTTAGATGAGATCACAAACGAACATGAGATAAGGCATTCAACTTATGAGGACTTAAAACAATCTATCCCAGATTACACAGATTATATGTCTGTGAAAGTTTTTGACAGATTGTACGAGAAGATTACTACCAATGAAATAAATGATAAGGAAACAGTCAAGCTGATTCTAGAGACCATGAAAAAACATAAAATATTTCATTTTGGATTCTTCAATAAAGGACAAAAAACAGCCAAAGATAGAGAAATATTTTTAGGTGAATTTGAAGCAAAAATGTGTCTGTACCTTGTCGAAAGAATAGCTAAAGAGAGGTGCAAATTAAACCCTGAAGAAATGATAAGTGAACCAGGCGACTCGAAACTAAGGGTATTAGAGAAGCAATCAGAAGACGAAATCAGGTATATTAGCAATACAATAAAGACATTAGGGAATGCCATAGAGAACTTGCAATCTGGATCTTTAAATTGGGCAGATATATGCGAAAACAAAGCAAGAGGACTTAAGATAGAAATAAATGCTGATATGTCCAAATGGAGTGCCCAAGATGTACTTTTTAAATATTTTTGGTTGATAGTGCTTGATCCCATCTTATATCCTGCTGAGAGGAAAAGGATAATTTATTTCCTCTGTAATTATATGCAGAAAAGGCTTATAATGCCCGATGAATTGCTCACTACTATATTGGATCAAAGAGTTCCTTATTCAAATGACATAATTGGATTAATGACAAACAATTATAGGTCTAATACAGTAGAAATAAAGCGTAACTGGCTTCAAGGCAACTTAAATTATACAAGCAGTTACTTACACAGCTGTAGTATGTCTGTGTACAAAGATATAATAAGAGAAGCAGCAATATTATTAGAAGGAGAAGCCCTTGTGAACTCAATGGTACATTCTGATGATAATCAAACATCTATATGTATGGTGCAGAATAAATTACCAGATGACAATATAATTGAATTTTGCATTAAGATATTCGAGAAGATATGCTTAACTTTTGGCAATCAGGCAAATATGAAGAAGACATATCTAACTAACTTCATCAAAGAGTTTGTTTCTTTATTTAATATACATGGAGAACCATTTTCTATATATGGGAGATTTCTACTCACAGCAGTAGGAGACTGTGCCTATCTAGGGCCTTATGAAGATTTAGCAAGTAGGCTATCTGCAACACAAACTGCTATAAAGCATGGTTGCCCACCATCACTTGCATGGGTATCTATCGCTCTAAATCACTGGATAACCCACACTACATATAATATGTTGCCTGGCCAAAATAATGACCCGTTACCATTCTTCCCTACTAACAATAGAAGTGAAATACCAGTAGAGATGTGCGGAATACTAGAAAGTGATTTATCAACAATTGCACTAACTGGTTTAGAAGCAGGGAATGTCACGTTTCTAACAAATATAGCAAGGAAGTTATCATCCCCAATCTTACAAAGAGAAAGTATTCAAGATCAATACAATTCTATAGAAAAGTGGGATCTGAGCAAATTATCACAGATCGACATTCTAAGGCTTAAAATGCTCAGGTATATATCTCTTGATAGTTCAGTCACATCTGATGATGGTATGGGGGAGACTAGTGAAATGAGATCTCGATCACTTTTAACACCTCGTAAATTCACAACAAGTGGGTCACTTAATAGGTTGAAATCATATAAAGACTTTCAAGATATAATAGCAGATGAGGACAAGACAAACGAACTATTTGAGAATTTCATTAGACACCCAGAGTTACTGGTTACAAAAGGCGAAACATTTGAAGAATTTGTTAATACGATATTATTTAGGTACAATTCAAAGAAATTCAAAGAATCTTTGTCAATACAAAACCCAGCACAGCTTTTTATTGAGCAAATATTATTTTCCAATAAACCAGTAATTGACTACACTAGCATACATGACAAGATTTTTGGATTACAAGACATGCCAGGAATTGAAGAACTAGATACAATTATAGGTCGCAAAACATTTGTTGAGAGTTATGTTCAAATCGTAGATGACTTAAGCAATTTAACATTGGATATAAACGATGTCAAGACTATATTTGCCTTTTGTCTTATGAATGACCCACTACTGATCACATCTGCTAACAATATAATAATGTCTGTTAAGGGACATAGTCAAGAAAGAATAGGTCAATCAGCATGCAAAATGCCAGAGGTCCGAAGTCTAAAACTCATACATTATTCACCAGCAGTTGTTTTGAGAGCCTATGTGAGAGGGCCAACAAATGTACCGAATGTAGATATAGATGAACTTGCAAGGGATCTATCTCATTTAGAAGACTTCATACAAAGTACAAAACTCAGAGAAAATATGAGAGAGAGAATAGAAATAAATGAGAAGCGGCACTTAGGAAGGGATTTCAAATTTGAAATCAAAGAACTAACTAGATTTTACCAAGTGTGTTATGATTACATAAAGTCTACAGAACATAAAGTCAAGGTATTCATATTGCCATACAAAGTTTTCACATCAATAGAATTCTGCGGGGCACTGACAGGTAACTTGATAAATGACAAATTATGGTACATAACGCATTATCTGAAAAATATAGTGTCTACTACACATAAGGCACAAATTTCTTCTTCACCTGAATTGGAATTGCAAATTGCTGATGAGGCACTAAGACTAGTAGCACATTTTGCTGATACTTTCTTGGCATCAGAATCAAGAATACAATTTCTGAAGAAAATTATTGAAGAATTCACATACAAAGGGATACCTGTAAAACATTTATACTCAAAAATAAAGAACTCCAAGTTGAGGGTTAAATTTCTAGGGATTCTTTTATGGTTAGATGATCTAACACAGAATGATCTGGATAAATTTGATGCAGATAAATCAGATGAAAAGATTATATGGAATAACTGGCAAGTGTCAAGAGATATGAATACTGGACCAATAGACTTAATGATAAGCGGTTACTCTAGACAGCTGCGGATCACTGGGGAAGATGACAAATTGATTGCTGCTGAATTGCAGGTTACTAGATTGTCAGAAGATTTAATTTATAGACACGGTCAGGCAATGTTGAATAAGCCACACGGCTTAAAGCTTGAAAAAATGCAACCTGTGACTGAGATGTCTAAACGATTACATTATATCGTTTTCCAGCAAAGATCACGGAAACGATACTTCTATTCTATATTACCCACCCAAGTAATTGAGGACCATAATTCTAGAGTTGAATCATCTAGGCTAAGCAGAGATTCAAAATGGGTTCCTGTATGCCCTGTTGCAATATCAAAACTCTACCAACAAGGACGGCCTATACTTTCCAAAGTTAGAAATCTGAATATGCAGACTCATTCGCTTTCCAGAATACAAGTTAATGTAGATGAATATGCCATCACGAGAAGAGCACATTTTCAGAAAATGCCTTTCTTCGAAGGACCATCAATCCCTTCTGGTGGTATGGATTTGTCTGAGTTGATGAAATCTACATCCCTATTAAGCTTGAATTATGATAACATAAAAAATGCATCCTTATTGGACATGTCTAGGGTATTTAAGTGCAATGGCAGTGGAGATGACCAAATGGCTTTCGAATTTCTATCGGACGAAATTTTGGAGCAAGATGTAGTTGAAGAAATAGAATGCAACCCTATATTTTCTATTAGTTATACAAAAAGAGGAGAATCCAATATGACTTATAAAAATGCTTTCCACAAAGCCTTAATCTCAGAATGTGACAAATTTGAAGAAGCATTTGACTTCCTCGACATGGGATTTTGCTCGAATGAAAATCTTAGTATTCTGGAGGAAATACATTGGATAATCAGTTATTTAAAAACAAATCAATGGTCTACGGAACTAGACAATTGTATTCACATGTGCATGTACAGGAATGGATATGATGCAGAATATCATAAATTTGATATACCCTCTAAATTCCTCAAAGACCCAATAAACCGAACAATAAATTGGACTGAAGTCATTGAATTTATATTATTAATTGAAGATTTCCAAACAAAAATTGAGCCATGGTCTAGTATGAAGTCACACTTCTGTTCAAAAGCACACAGTGTAGCACTAGAGTGTATGAAAAATGAGAAAAGATCATTGGCAGAATTTGTAGACAAAAGTAAGAAAACTGGCAAATCCAAATTTGACTTCTAAGGTATACACATGTAAAAGTAGTGTTTGTTTCTAAATAGGAGCACACTACT" } -} \ No newline at end of file +} diff --git a/data/community/itps/orov/L/tefe/pathogen.json b/data/community/itps/orov/L/tefe/pathogen.json index 203636f25..1115bf333 100644 --- a/data/community/itps/orov/L/tefe/pathogen.json +++ b/data/community/itps/orov/L/tefe/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/L/tefe", "reference accession": "PP154172.1", - "reference name": "Oropouche virus ILMD_TF29 (tefe), L segment" + "reference name": "Oropouche virus ILMD_TF29 (tefe), L segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 35 - }, - { - "begin": 6794, - "end": 6814 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data/community/itps/orov/L/tefe/tree.json b/data/community/itps/orov/L/tefe/tree.json index cd5a4f5e4..855753c83 100644 --- a/data/community/itps/orov/L/tefe/tree.json +++ b/data/community/itps/orov/L/tefe/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -81,7 +81,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 35 + }, + { + "begin": 6794, + "end": 6814 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -9958,4 +9972,4 @@ "L": "MSQLLLNQYRNRILHCREPEIAKDIWRDLLNDRHNYFSREFCRAANLEYRNDVPAEDICAEVLDGYKARKVRFCTPDNYLLHDGKMYIIDFKVSVDDRSSRITREKYNEIFGEVFNPEGVDFEIVIIRLDPSNMAIHVDSRDFMNTIGPITLNISMQWFFDMKDFLFGKFRDDDKFHAIISQGEFTMTLPWTEEDTPELLTHPIYNEFMNSMPESEQALFKEALEFKSFGAEKWNIFLKGVMSKYGEYYKEFTKGHAQSIFLATGDYPKPDKDQISAGWREMVSRVSSERDMSNDINQEKPSIHFIWAQNDSSSNNNIQKLIKLSKSLQAMSGTGSYVSAFKSLGRLMDISSDIKKYESFCGKLKSLARSSVKKLDRKIEPVQIGTATVLWEQQFKLDTDVIKREDRIHLMKDYFGIGKHKSFSKKLNNDINTDKPKILNFDNDDIVRKCKDKYNQVTHNLSQVNELDKIGNYLEHFSAKISACSVEMWDFIYNTTKTKYWQCINDYSTLMKNMLAVSQYNRHNTFRIVSCANNNVFGLVMPSSDIKTKKATLVYAIIALHNEETEIAELGSLYSTFKTTTGYISISKAFRLDKERCQRIVSSPGLFLMTSCLLFNGNKSLEFDKLLGFSFFTSISITKAMLSLTEPSRYMIMNSLAVSSHVKEYISEKFSPYTKTAFSVVMTDLIKKGCYSAYEQRKKVQIRDIKLTDYDITQKGVDSKRDLKSIWFPGKVNLKEYLNQIYLPFYFNSKGLHEKHHVLIDLAKTVLEIEKEQRESLPEPWSEIPAKQTVNLNILIYSIARNLNLDTSRHNFVRSRVENANNFNRSITTISTFTSSKSCIKIGDFEEEKKKKTKNDAKKLAKDISKLTIANPAFLDEITNEHEIRHSTYEDLKQSIPDYTDYMSVKVFDRLYEKITTNEISDKETVKLILETMKKHKIFYFGFFNKGQKTAKDREIFLGEFEAKMCLYLVERIAKERCKLNPEEMISEPGDSKLRVLEKQSEDEIRYISNTIKTLGNAIENLQSGSLNWADICESKARGLKIEINADMSKWSAQDVLFKYFWLIVLDPILYPAERKRIIYFLCNYMQKRLIMPDELLTTILDQRVPYSNDIIGLMTNNYRSNTVEIKRNWLQGNLNYTSSYLHSCSMSVYKDIIREAATLLEGEALVNSMVHSDDNQTSICMVQNKLPDDNVIEFCIKIFEKICLTFGNQANMKKTYLTNFIKEFVSLFNIHGEPFSIYGRFLLTAVGDCAYLGPYEDLASRLSATQTAIKHGCPPSLAWVSIALNHWITHTTYNMLPGQNNDPLPFFPTNNRNEIPVEMCGILESDLSTIALTGLEAGNVTFLTNIARKLSSPILQRESIQDQYNSIEKWDLSRLSQIDILRLKMLRYISLDSSVTSDDGMGETSEMRSRSLLTPRKFTTSGSLNRLKSYKDFQNIITDEDKTNELFENFIRHPELLVTKGETFEEFVNTILFRYNSKKFKESLSIQNPAQLFIEQILFSNKPIIDYTSIHDKIFGLQDMPGIEELDTIIGRKTFVESYVQIVDDLSNLTLDINDVKTIFAFCLMNDPLLITSANNIIMSVKGHSQERIGQSACKMPEVRSLKLIHYSPAVVLRAYVRGPTNVPNADIDELARDLSHLEDFIQSTKLRENMRERIEINEKRHLGRDFKFEIKELTRFYQVCYDYIKSTEHKIKVFILPYKVFTSIEFCGALTGNLINDKLWYITHYLKNIVSTTHKAQISSSPELELQIADEALRLIAHFADTFLAPESRIQFLKKVIEEFTYKGIPVKHLYSKIKNSKLRVKFLGILLWLDDLTQNDLDKFDADKSDEKIIWNNWQVSRDMNTGPIDLMISGYSRQLRITGEDDKLIAAELQVTRLSEDLIYRHGQAMLNKPHGLKLEKMQPVTEMSKQLHYIVFQQRSRKRYFYSILPTQIIEDHNSRIESSRLNRDSKWVPVCPVAVSKLYQQGRPILSKVKNLNMQTHSLSRIQVNVDEYAITRRAHFQKMPFFEGPSIPSGGMDLSELMKSTSLLSLNYDNIKNASLLDMSRVFKCNGSENDQMAFEFLSDEILEQDVVEEIECNPIFSISYTKRGESNMTYKNAFHKALISECDKFEEAFDFLDMGFCSNENLSILEEIHWIISYLKTNQWSTELDNCIHMCMYRNGYDAEYHRFDIPSKFLKDPINRTVNWTEVIEFILLIEDFQTKIEPWSSMKSHFCSKAHSVALECMKSEKRSLAEFVDKSKKTGKSKFDF*", "nuc": "ACTCCTATTTCGAAACAAACAAAAACAATCTCAAAATGTCGCAACTGTTACTCAACCAATATCGAAATAGGATATTGCACTGCCGTGAACCTGAAATAGCAAAGGATATATGGCGTGATCTATTGAATGATCGACACAACTACTTTTCTCGAGAATTTTGCAGAGCTGCAAACCTTGAGTATAGAAATGATGTTCCTGCTGAGGATATTTGTGCTGAAGTCCTCGATGGTTACAAAGCAAGGAAAGTGCGCTTTTGCACACCTGATAATTACTTACTACACGACGGGAAAATGTATATAATAGATTTCAAAGTGTCTGTGGACGATCGGTCTTCCAGAATTACAAGAGAGAAATACAATGAAATTTTTGGAGAAGTGTTCAACCCAGAAGGTGTGGACTTTGAAATCGTTATTATCAGGTTGGATCCTTCAAATATGGCTATACATGTTGACTCTCGAGATTTCATGAATACAATCGGACCAATCACGCTAAACATTAGTATGCAATGGTTTTTTGATATGAAAGACTTCTTATTTGGCAAATTCCGGGATGATGATAAATTCCATGCTATAATAAGTCAAGGAGAATTCACAATGACATTGCCATGGACCGAAGAAGATACTCCAGAATTGCTTACTCATCCTATATACAATGAGTTCATGAATTCAATGCCAGAGTCAGAACAGGCCCTGTTCAAAGAAGCATTGGAATTCAAATCATTCGGAGCAGAAAAATGGAATATTTTCTTAAAGGGAGTGATGTCTAAGTATGGTGAATATTATAAAGAATTTACCAAAGGACATGCCCAATCCATATTCTTGGCAACAGGGGACTACCCCAAACCAGATAAGGACCAAATTTCAGCTGGCTGGCGAGAGATGGTAAGTAGAGTGAGCTCTGAACGTGACATGTCAAATGACATAAATCAGGAAAAACCAAGCATACATTTTATATGGGCACAAAATGACTCAAGTAGCAATAATAACATACAGAAATTAATCAAACTATCCAAATCATTGCAAGCCATGAGTGGAACAGGAAGCTATGTAAGTGCTTTTAAATCATTAGGAAGATTGATGGATATATCATCAGACATCAAAAAGTATGAGTCGTTCTGCGGAAAATTAAAATCTTTGGCAAGGTCTAGCGTAAAGAAACTCGACAGGAAAATAGAACCGGTACAAATTGGAACAGCAACTGTCTTATGGGAGCAACAATTTAAATTAGATACGGATGTCATAAAAAGAGAGGACAGAATACATTTAATGAAAGATTATTTCGGAATTGGTAAACACAAGTCTTTTTCAAAAAAGCTAAACAATGACATAAATACCGATAAGCCTAAAATATTGAATTTTGACAATGACGATATAGTTAGGAAATGCAAAGATAAATATAACCAAGTCACACATAACTTGTCTCAAGTTAATGAATTAGACAAGATTGGAAATTATCTAGAGCATTTTTCAGCTAAAATTAGTGCCTGCAGTGTAGAAATGTGGGACTTTATATATAATACGACTAAAACCAAGTACTGGCAATGCATCAACGACTACTCTACCCTAATGAAAAACATGCTAGCTGTTTCCCAATATAATAGGCACAATACCTTTAGGATTGTCTCGTGTGCGAATAACAATGTATTTGGCCTAGTGATGCCAAGCTCAGACATAAAAACAAAAAAAGCAACATTAGTCTATGCAATAATAGCTCTCCACAATGAGGAGACAGAGATAGCAGAACTTGGTTCACTCTATTCCACTTTCAAGACAACAACAGGCTATATTTCAATATCAAAAGCTTTTAGGCTAGATAAAGAAAGGTGCCAGCGCATAGTGTCCTCTCCAGGCTTATTTCTTATGACAAGCTGTCTATTATTCAATGGTAATAAGAGTCTAGAGTTTGATAAGTTACTAGGCTTTTCATTTTTTACATCAATATCGATTACAAAAGCTATGCTCTCTCTTACTGAGCCTTCACGCTATATGATCATGAATTCATTGGCAGTTTCTAGCCATGTAAAAGAGTATATATCTGAAAAATTTTCTCCTTATACAAAAACAGCATTTTCTGTAGTGATGACAGATTTGATTAAAAAAGGTTGCTATTCAGCATATGAACAGAGGAAAAAGGTCCAAATAAGGGATATAAAGTTAACAGACTACGATATAACACAGAAAGGGGTAGATTCCAAAAGAGATCTTAAATCCATTTGGTTCCCGGGAAAGGTAAATTTAAAAGAATACTTGAACCAGATTTATTTACCATTTTATTTTAATTCCAAAGGATTGCATGAAAAGCATCATGTTTTAATAGATTTGGCTAAAACAGTGCTAGAAATCGAAAAAGAGCAAAGAGAATCATTACCTGAGCCATGGTCAGAGATACCTGCTAAGCAGACTGTCAACTTAAATATTTTGATTTACTCAATTGCAAGGAATTTGAACTTAGATACTTCAAGACATAATTTTGTGAGGAGCCGGGTGGAAAATGCAAATAACTTTAACAGATCTATAACAACAATATCCACCTTTACCAGCTCGAAATCATGCATTAAAATTGGTGATTTTGAGGAGGAGAAAAAGAAGAAAACTAAAAATGATGCAAAGAAACTAGCAAAAGATATTTCTAAATTAACTATAGCCAACCCAGCATTCTTAGATGAAATCACAAATGAACATGAGATAAGACACTCAACTTATGAGGATTTGAAACAATCTATCCCAGATTACACAGACTATATGTCTGTAAAAGTTTTTGACAGACTATATGAGAAGATTACTACTAACGAAATAAGTGATAAAGAAACAGTCAAGTTGATTCTAGAGACTATGAAGAAGCATAAAATATTTTACTTCGGATTCTTCAACAAAGGACAAAAAACAGCTAAAGATAGAGAAATATTTTTAGGTGAATTCGAGGCAAAAATGTGCCTGTACCTTGTTGAAAGAATAGCCAAAGAGAGATGCAAATTAAACCCAGAAGAAATGATAAGCGAACCAGGCGACTCTAAGTTAAGAGTATTAGAAAAGCAATCAGAAGATGAAATTAGGTATATCAGCAACACAATAAAGACATTGGGAAATGCCATAGAAAACCTGCAATCCGGGTCTTTAAATTGGGCAGATATATGTGAAAGTAAGGCACGAGGGCTTAAAATAGAAATAAATGCTGATATGTCTAAATGGAGTGCCCAAGATGTACTTTTCAAGTATTTCTGGCTGATAGTACTTGATCCTATCTTATATCCTGCTGAGAGGAAGAGAATAATTTATTTTCTATGTAATTATATGCAAAAAAGGCTTATAATGCCTGATGAATTGCTCACTACAATATTGGACCAGAGGGTTCCTTATTCAAATGATATAATTGGGTTGATGACAAACAATTACAGATCCAACACAGTAGAAATAAAGCGCAACTGGCTTCAAGGCAATTTAAATTATACAAGTAGTTACTTGCACAGCTGTAGTATGTCTGTATATAAAGACATAATAAGGGAAGCAGCAACATTATTAGAAGGGGAAGCCCTTGTGAATTCAATGGTACATTCTGATGATAATCAAACATCCATATGTATGGTGCAAAACAAGTTGCCAGATGACAATGTAATTGAATTTTGCATCAAGATATTCGAGAAGATATGTTTAACTTTTGGAAATCAGGCAAACATGAAAAAGACATACCTAACCAACTTCATCAAGGAATTTGTTTCTTTATTTAATATACACGGGGAGCCATTCTCTATATACGGGAGGTTTTTGCTTACAGCAGTAGGGGACTGTGCCTATCTGGGGCCTTATGAAGATTTAGCAAGTAGGCTATCTGCAACACAAACTGCTATAAAGCATGGCTGCCCACCATCACTGGCATGGGTATCCATTGCTTTGAATCACTGGATAACTCACACCACGTATAATATGTTACCTGGCCAAAATAATGACCCATTACCATTCTTCCCTACCAACAATAGAAATGAAATACCAGTGGAGATGTGTGGAATACTAGAAAGTGACTTATCAACAATTGCACTAACCGGTTTAGAAGCGGGAAATGTCACGTTTCTAACAAATATAGCAAGAAAACTATCATCTCCAATCTTGCAAAGAGAAAGTATCCAAGACCAATACAATTCTATAGAAAAATGGGACCTAAGTAGGTTATCGCAGATTGACATTCTGAGGCTTAAAATGCTTAGGTACATATCTCTTGATAGTTCGGTCACATCTGATGACGGTATGGGGGAGACCAGTGAAATGAGGTCGCGATCGCTTTTAACACCTCGTAAATTCACAACGAGTGGGTCACTCAATAGACTTAAATCGTATAAAGATTTTCAAAATATAATAACAGATGAGGATAAGACAAACGAGCTATTTGAGAATTTCATTAGGCATCCAGAGTTATTGGTCACAAAAGGCGAAACATTTGAAGAATTTGTCAATACAATATTATTTAGGTATAATTCAAAGAAATTCAAAGAATCTCTGTCAATACAAAATCCAGCACAACTCTTTATTGAGCAAATATTATTTTCCAACAAACCAATAATTGACTACACTAGCATACATGATAAGATTTTTGGATTGCAAGATATGCCAGGAATCGAAGAACTAGATACAATCATAGGCCGCAAAACATTTGTTGAAAGTTATGTCCAGATTGTAGATGATTTAAGCAACTTAACACTGGATATTAATGATGTCAAGACTATATTCGCCTTCTGTCTCATGAATGATCCACTACTAATTACATCCGCTAATAACATAATAATGTCTGTTAAAGGGCATAGCCAAGAAAGAATAGGACAATCAGCATGCAAAATGCCAGAGGTCAGGAGTCTGAAGCTTATACATTATTCACCAGCAGTTGTTTTGAGAGCCTATGTGAGAGGGCCAACAAATGTGCCAAATGCAGATATAGACGAGCTTGCGAGGGATCTATCTCATCTGGAAGATTTCATACAAAGCACAAAACTCAGAGAGAATATGAGAGAGAGAATAGAAATAAATGAGAAACGGCATTTAGGAAGAGATTTCAAGTTTGAAATCAAAGAATTGACTAGATTTTACCAAGTGTGTTATGATTATATAAAATCTACAGAACATAAAATTAAGGTATTCATATTGCCATACAAAGTTTTCACATCAATTGAATTCTGTGGCGCACTGACAGGGAACTTAATAAATGACAAATTGTGGTATATAACACATTACTTAAAAAATATAGTGTCTACTACACACAAGGCACAAATTTCGTCCTCACCTGAATTGGAATTGCAAATAGCTGATGAAGCACTGAGGCTAATAGCACATTTTGCCGATACTTTCTTGGCACCTGAATCAAGAATTCAATTTCTGAAAAAGGTTATCGAAGAATTCACATACAAAGGGATACCTGTAAAACATTTATATTCCAAAATAAAGAATTCCAAGTTGAGGGTCAAATTCTTAGGGATCCTTTTGTGGTTGGATGACCTAACACAAAATGATTTGGATAAGTTTGATGCAGATAAATCAGACGAAAAGATTATATGGAATAACTGGCAAGTATCAAGAGATATGAACACCGGACCAATAGATTTAATGATAAGTGGCTATTCCAGGCAACTGCGGATCACAGGGGAAGATGATAAATTGATTGCTGCTGAATTGCAAGTCACTAGATTGTCAGAAGATTTGATTTACAGACACGGCCAGGCAATGTTAAATAAACCGCACGGATTGAAGCTTGAAAAGATGCAGCCTGTAACTGAGATGTCTAAACAACTACATTATATCGTTTTCCAGCAGAGGTCAAGAAAGCGGTATTTCTATTCTATATTGCCCACCCAAATAATTGAAGATCATAATTCTAGAATCGAATCATCTAGGTTAAACAGAGATTCAAAATGGGTTCCTGTGTGTCCTGTTGCAGTATCAAAACTCTATCAGCAAGGACGACCTATACTTTCCAAGGTTAAGAATCTGAATATGCAGACTCATTCACTTTCTAGAATACAGGTTAATGTAGATGAATATGCCATTACAAGAAGAGCGCATTTCCAGAAGATGCCTTTCTTTGAAGGACCATCCATCCCTTCTGGTGGCATGGATCTATCAGAGTTAATGAAATCCACATCCTTATTGAGCTTAAATTATGACAATATAAAAAATGCTTCTTTATTGGATATGTCTAGAGTATTCAAGTGCAATGGCAGTGAAAATGACCAAATGGCTTTTGAGTTCCTGTCAGATGAAATTCTAGAGCAAGACGTAGTTGAAGAAATAGAATGCAACCCTATATTTTCTATCAGTTATACAAAAAGAGGAGAATCCAATATGACTTATAAAAATGCTTTCCACAAAGCTTTAATCTCAGAATGTGACAAATTTGAAGAAGCATTCGACTTTCTTGACATGGGGTTTTGCTCGAACGAGAACCTTAGTATTTTAGAGGAAATACATTGGATTATCAGTTATTTGAAGACGAATCAGTGGTCCACAGAACTAGACAATTGTATTCATATGTGTATGTATAGGAATGGGTATGATGCAGAGTATCATAGATTTGATATACCTTCTAAATTCCTCAAAGACCCGATAAACCGAACAGTAAATTGGACAGAGGTTATTGAGTTTATACTATTAATTGAAGATTTCCAAACAAAGATTGAGCCATGGTCGAGTATGAAGTCACATTTCTGTTCAAAAGCACACAGTGTAGCGTTAGAGTGCATGAAAAGCGAGAAAAGATCACTGGCAGAATTTGTAGACAAAAGTAAGAAAACTGGGAAATCCAAGTTTGATTTCTAAGGTATATGCATGTAAAAGTA" } -} \ No newline at end of file +} diff --git a/data/community/itps/orov/M/refseq/pathogen.json b/data/community/itps/orov/M/refseq/pathogen.json index a2436c56b..358f3bfb0 100644 --- a/data/community/itps/orov/M/refseq/pathogen.json +++ b/data/community/itps/orov/M/refseq/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/M/refseq", "reference accession": "NC_005775.1", - "reference name": "Oropouche virus, M segment" + "reference name": "Oropouche virus, M segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 31 - }, - { - "begin": 4294, - "end": 4385 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data/community/itps/orov/M/refseq/tree.json b/data/community/itps/orov/M/refseq/tree.json index 4cd145e70..63a469a64 100644 --- a/data/community/itps/orov/M/refseq/tree.json +++ b/data/community/itps/orov/M/refseq/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -81,7 +81,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 31 + }, + { + "begin": 4294, + "end": 4385 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -10183,4 +10197,4 @@ "M": "MANLIIISMVLGVAYGHPLSTSQIGDRCFAGGNLFKEMNLSVGLGEICVKDDISIVKSTTVFSKNKPALEATTKFYRSFIVKDWSECNPVLDKFGNFMVLSVDDNGHIIPKMYTCRAACDIRLNKDNAEIILSSTKLNHFEIVGTTSTSGWFKNTITNNLEHTCEHVTVNCGQKSVKFHACFRQHRGCIRFFKGTYMPYSMIEAMCVNIELIILTLYIFAAIIFALIITKSYVAYLLLPLFYPVTWFYGKVYKKINSCPNCLLASHPFTSCPKFCICGSRFSCTEALKVHRMGKDCLGYKSLSKARQMCKSKSWSFTAAILTGLILMEFISPIAGERMYKLEELADEFIKLTEQVNILEREMEVLKQSIIVMFAIILVLLLFENMIFNRLFRIFYRSCSMCGLIHYRPGLKIDLTKTNRCGSCICGFDEQQSSGFEYEIFLKDMHVQKESCKFSPRVNHFRNIKALLFALVICATIYTVYADEDCLSKDIKITYQELHNCIGPKIMGDTCVSKSELYSDLFSKNLVTEYDKKYFEPDTVNDQFNKIEFAQDAHRMILLERILYKTECEMLSLKKNSGPYNVAWRTYLKNHNIDLCSRHNYKMICQCINTHSMCNNTDIDYNKEIETYYKSNAAAYRADLNTIMDTLKTAFRGLTKVLIENYIEKDDSDALKALFSNITDSVQDNYQMIGILKFASKLLDINLGRSTRSAHHSIMTNEIPKSNPFTDYSYSNLNIKECMSPESLKCFKKRGSTPHTNHLLCKIDNKYKAFDWPEIETIQKGQKLCLGDSHCNLEFTAITADKIMSLTNCYKESFTAQPADMQAGIKKCSADEIGECTTLEDKTWPIIFCGGKYYYSDSKEHAKDGSINNYCLTNKCSEQRFPIHENWFKKCNWDKTHKEFSTMRQINYNDITSYRKAIESEIGTDLMTHHYKPTKNLPHVVPRYHSIDVQGTESTEGIINGFIQNTIPAISGLGVGYHLNFQSNQLFDIVIFVKKAVYKAQYQKAYTTGPSISINIEHNERCTGHCPEKIPAKEGWLTFSKEHTSSWGCEEYGCLAIDTGCLYGSCQDVIRPELDVYKKIGSEVSLIEICITLPHETYCNDMDILEPIIGDKLSASFQNTQTNQLPTLIAYKKGKIYTGQINDIGNTALQCGSIQVINGSTIGTGSPKFDYICHAMRRKDVIVRKCFNDNYQSCTRLEKRNDLIPYRKGDVIEVSKTGSNMGQMTFKIELGDINYKIFTKSIDLQMSGICAGCIDCAEGISCSINAEVPAETVCHCKTNCEDFINNIVFSPQIKNYNIKVHCKSKVEKITAHICGRDIDLQLTIKPYNQKIDLSQLDESNYIREEDLQCGTWLCKVQKEGIDIIFKGLFSGLGRYWTILIYSIIGVVIIVILVYILLPIGRLLKAFLIRHEIEYAMEQKIK*", "nuc": "AGTAGTGTGCTACCGGCAACAAACAGTGACAATGGCGAATTTAATAATTATTTCAATGGTTCTGGGCGTTGCCTATGGGCATCCGCTTTCAACAAGTCAAATTGGTGACCGCTGTTTTGCTGGTGGTAACCTCTTCAAGGAGATGAACTTGAGTGTAGGACTTGGCGAAATATGTGTTAAAGATGACATATCTATTGTTAAGAGTACTACTGTTTTTAGCAAGAATAAACCAGCTCTTGAGGCAACTACAAAATTTTATAGATCTTTTATTGTGAAAGATTGGTCTGAGTGCAATCCAGTGCTAGACAAATTTGGAAATTTTATGGTTTTAAGTGTTGATGATAATGGCCATATAATACCTAAAATGTATACATGTAGAGCAGCATGTGATATTAGATTAAACAAAGATAATGCCGAAATAATATTATCGTCAACAAAACTCAACCACTTTGAAATTGTCGGGACAACTTCGACATCAGGCTGGTTCAAGAACACAATAACAAACAACTTAGAACATACATGCGAGCATGTAACCGTAAATTGTGGTCAGAAATCAGTAAAATTCCATGCATGCTTTAGACAACATAGGGGTTGTATAAGATTCTTTAAAGGAACATATATGCCATACTCAATGATTGAAGCAATGTGCGTTAACATAGAGCTAATAATTCTGACATTATATATCTTTGCTGCAATTATATTTGCATTAATTATAACAAAGAGTTATGTGGCATACTTGCTCCTGCCGTTATTTTATCCAGTGACGTGGTTTTACGGAAAGGTTTATAAAAAGATTAATTCTTGCCCAAATTGTCTACTTGCATCTCACCCTTTCACCAGCTGCCCTAAATTCTGTATATGCGGTTCTAGGTTTAGTTGCACAGAAGCTCTTAAGGTACATAGAATGGGAAAGGACTGCTTAGGTTATAAGTCTCTAAGCAAAGCTAGACAGATGTGTAAATCGAAAAGCTGGTCCTTCACAGCAGCTATATTAACTGGATTAATATTGATGGAATTCATCTCACCAATTGCAGGAGAGAGAATGTATAAGCTTGAGGAGCTGGCTGATGAGTTTATAAAGCTAACAGAGCAGGTAAATATTTTAGAAAGAGAAATGGAAGTCTTGAAGCAGTCAATAATTGTTATGTTTGCAATCATTTTGGTATTGTTGCTTTTTGAAAATATGATATTCAACCGGCTTTTCCGCATTTTTTATCGTTCTTGCTCCATGTGCGGCTTGATACATTATAGACCAGGACTCAAGATCGATTTAACCAAAACTAACAGATGTGGTAGTTGCATCTGTGGATTCGACGAGCAGCAATCATCTGGTTTTGAATATGAAATATTTCTAAAGGATATGCATGTCCAGAAAGAATCATGCAAATTTAGTCCAAGAGTAAACCACTTTAGGAATATTAAAGCTTTATTATTTGCACTTGTAATCTGTGCTACTATATATACAGTTTATGCAGATGAAGATTGCTTATCTAAAGATATTAAAATAACATATCAAGAGTTGCACAATTGCATAGGTCCAAAGATAATGGGCGATACTTGTGTATCAAAGAGTGAATTGTATTCTGATTTATTCTCAAAAAATCTAGTCACAGAATATGATAAAAAATATTTTGAACCCGATACTGTAAATGATCAATTCAACAAGATAGAGTTTGCCCAAGATGCACATAGAATGATACTATTAGAAAGAATACTTTACAAGACAGAATGTGAAATGCTAAGCTTAAAAAAGAACAGTGGACCTTATAATGTTGCCTGGCGCACATATTTAAAAAATCATAATATAGACTTATGCAGTAGGCACAACTATAAAATGATATGTCAGTGTATTAATACACACTCTATGTGTAATAATACAGATATAGATTATAACAAAGAGATCGAAACATATTATAAAAGCAATGCTGCAGCCTATAGAGCTGACCTGAACACCATAATGGACACATTAAAAACAGCATTCAGAGGGCTTACAAAGGTCCTAATTGAAAATTATATAGAAAAAGATGACTCTGATGCTCTTAAGGCCTTATTTAGTAATATTACTGATTCTGTTCAGGACAATTATCAGATGATTGGAATATTGAAATTTGCCAGTAAGCTATTAGATATTAACCTTGGTAGATCCACCCGCTCAGCTCATCATTCTATAATGACAAACGAAATTCCCAAATCTAATCCTTTTACTGATTACAGTTATTCTAATCTGAATATAAAGGAGTGCATGTCACCAGAGAGCTTGAAATGTTTTAAGAAGAGAGGCAGTACACCGCATACAAACCACCTGCTTTGCAAGATAGACAACAAATATAAAGCATTTGACTGGCCAGAGATAGAAACAATTCAAAAAGGTCAAAAATTGTGCCTTGGTGACAGTCATTGCAACTTGGAATTTACAGCCATAACTGCAGACAAGATTATGTCATTAACTAACTGTTATAAAGAATCTTTCACTGCGCAACCAGCAGATATGCAGGCTGGAATTAAAAAATGCTCAGCTGATGAAATTGGAGAATGTACAACACTTGAAGACAAGACATGGCCAATTATATTCTGTGGTGGCAAATATTACTACTCTGATAGCAAGGAGCATGCCAAGGACGGTTCTATCAACAATTATTGTTTAACCAACAAATGCTCTGAACAACGTTTCCCAATACATGAAAATTGGTTCAAAAAATGTAATTGGGACAAGACCCACAAAGAATTTAGCACTATGAGACAAATAAACTATAATGATATAACTTCTTATAGAAAGGCAATAGAATCTGAGATAGGAACAGATTTGATGACACACCATTATAAGCCCACAAAGAACCTTCCACATGTTGTACCAAGGTATCATAGTATAGATGTACAAGGTACAGAATCAACAGAGGGTATTATCAATGGTTTCATACAAAATACAATACCTGCTATTAGTGGTCTAGGTGTCGGTTATCATCTGAATTTTCAAAGCAATCAGTTATTTGACATAGTTATTTTTGTGAAAAAAGCTGTATATAAAGCACAGTACCAGAAAGCATACACCACAGGTCCTAGCATATCCATAAATATTGAACACAACGAAAGATGCACAGGCCACTGCCCCGAAAAGATTCCTGCAAAAGAAGGTTGGTTAACATTTTCTAAAGAGCATACTAGTTCTTGGGGATGTGAAGAATATGGCTGTCTTGCTATAGATACAGGCTGTCTATATGGCTCTTGTCAAGATGTCATACGCCCAGAATTAGATGTTTATAAGAAGATTGGCAGTGAGGTATCACTGATAGAAATATGTATAACTTTGCCTCATGAAACTTATTGCAATGATATGGACATATTAGAACCGATTATAGGAGATAAATTAAGTGCATCCTTTCAGAATACACAGACTAATCAACTTCCGACCCTTATAGCTTATAAAAAAGGGAAGATATACACAGGTCAAATCAACGATATTGGAAACACAGCATTGCAGTGCGGCTCAATCCAAGTAATCAATGGATCAACTATCGGAACTGGCAGCCCCAAATTTGATTATATATGCCATGCTATGAGAAGGAAAGATGTTATTGTAAGGAAGTGTTTCAATGACAATTATCAGTCGTGCACTAGGCTAGAAAAACGGAACGACTTGATCCCTTATAGAAAAGGCGATGTCATCGAAGTATCAAAAACAGGATCGAACATGGGCCAAATGACATTTAAAATAGAACTAGGTGATATCAACTATAAAATATTTACTAAATCAATAGATCTTCAAATGTCTGGCATTTGTGCTGGGTGCATTGACTGTGCTGAAGGCATTTCATGCTCTATAAATGCTGAAGTGCCAGCCGAAACAGTCTGCCATTGCAAAACAAACTGTGAAGATTTTATAAACAATATAGTGTTTTCACCGCAAATCAAGAATTACAATATAAAAGTCCACTGTAAATCTAAAGTTGAAAAAATAACAGCACATATCTGTGGGAGAGACATTGATTTACAGTTAACAATTAAGCCATACAATCAGAAGATAGACTTGTCGCAGTTAGATGAATCAAATTACATAAGGGAAGAGGACCTCCAGTGTGGAACATGGTTATGTAAAGTGCAAAAAGAGGGGATTGATATTATATTTAAAGGATTATTTTCAGGCTTAGGGAGATATTGGACCATATTAATTTATTCAATTATAGGTGTGGTAATAATTGTGATATTGGTTTATATCCTGTTGCCCATAGGTCGGCTTTTAAAAGCATTCCTAATCAGACATGAAATAGAATATGCCATGGAGCAGAAAATCAAGTAGATTTGGCTAAAAAGGGTAGGCAGGTCTAAAATCAGGTATAAATAAAATTCATATAAATAAAGTCAAAAATTGTTGTCGGTAGCACACTACT" } -} \ No newline at end of file +} diff --git a/data/community/itps/orov/M/tefe/pathogen.json b/data/community/itps/orov/M/tefe/pathogen.json index 68326b1e5..1527dcb3e 100644 --- a/data/community/itps/orov/M/tefe/pathogen.json +++ b/data/community/itps/orov/M/tefe/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/M/tefe", "reference accession": "PP154171.1", - "reference name": "Oropouche virus ILMD_TF29 (tefe), M segment" + "reference name": "Oropouche virus ILMD_TF29 (tefe), M segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 20 - }, - { - "begin": 4283, - "end": 4371 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data/community/itps/orov/M/tefe/tree.json b/data/community/itps/orov/M/tefe/tree.json index ed3bece58..d11421f61 100644 --- a/data/community/itps/orov/M/tefe/tree.json +++ b/data/community/itps/orov/M/tefe/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -85,7 +85,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 20 + }, + { + "begin": 4283, + "end": 4371 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -10417,4 +10431,4 @@ "M": "MANLIIISMVLSVAYGHPLSTSQIGDRCFAGGNLFKEMNLSVGLGEICVKDDISIVKSTTVFSKNRPALEATTKFYRSFIVKDWSECNPVLDKFGNFMVLSVDDNGHIIPKMYTCRAACDIRLNKDNAEIILSSTKLNHFEIVGTTSTSGWFKNTITNNLEHTCEHVTVNCGQKSVKFHACFRQHRGCIRFFKGTYMPYSMIEAMCVNIELIILTLYIFAAIIFALIITKSYVAYLLLPLFYPVTWFYGKVYKKINSCPNCLLASHPFTSCPKICICGSRFSCTEALKVHRMGKDCLGYKSLSKARQMCKSKSWSFTAAILTGLILMEFISPIAGERMYKLEELADEFIKLTEQVNILEREMEVLKQSIIVMFAIILVLLLFENMIFNRLFSTFYRSCSMCGLIHYRPGLKVDLTKTNRCGSCICGFNEQQSSGFEYEIFLKDMHIQKESCKFSPRVNHFRNIKALLFALVICATIYTVYADEDCLSKDIKITYQELHNCIGPKIMGDTCVSKNELYSDLFSKNLVTEYDKKYFEPDTVNDQFNKIEFAQDAHRMILLERILYKTECEMLSLKKNSGPYNVAWRTYLKNHNIDLCSRHNYKMICQCINTHSMCKNTDIDYNKEIETYYKSNTAAYRADLNTIMDTLKTAFRGLTKVLIENYIEKDDSDALKALFSNITDSVQDNYQMIGILKFASKLLDINLGRSTRSARHSIMTNEIPKSNPFTDYSYSNVNIKECMSPESLKCFKKRDSTPHTNHLLCKIDSKYKAFDWPEIETIQKGQKLCLGDSHCNLEFTAITADKVMSLTNCYKESFTAQPADMQTGIKKCSADEIGECTTLEDKTWPIVFCGGKYYYSDSKEHAKDGSINNYCLTNKCSEQRFPIHENWFKKCNWDKTHKEFSTMRQINYNDITSYRKAIESEIGTDLMTHHYKPTKNLPHVVPRYHSIDVQGTESTEGIINGFIQNTIPAISGLGVGYHLNFKGNQLFDIVIFVKKAVYKAQYQKAYTTGPSISINIEHNERCTGHCPEKIPAKEGWLTFSKEHTSSWGCEEYGCLAIDTGCLYGSCQDVIRPELDVYKKIGSEASLIEICITLPHETYCNDMDILEPIIGDKLSASFQNTQTNQLPTLIAYKKGKIYTGQINDIGNTALQCGSIQVINGSTIGTGSPKFDYICHAMRRKDVIVRKCFNDNYQSCTRLEKRNDLIPYRKGDVIEVSKTGSNMGQMTFKIELGDINYKIFTKSIDLQMSGICAGCIDCAEGISCSINAEVSAETVCRCKTNCEDFINNIVFSPQIKNYNIKVHCKSKVEKIIAHICGRDIDLQLTVKPYNQKIDLSQLDESNYIREEDLQCGTWLCKVQKEGVDIIFKGLFSGLGRYWTILIYSIIGVVIIVILVYILLPIGRLLKAFLIRHEIEYAMEQKIK*", "nuc": "ACCAGCAACAAACAGTGACAATGGCGAATTTAATAATTATTTCAATGGTTCTGAGCGTTGCCTACGGGCATCCTCTTTCAACAAGTCAAATTGGTGACCGCTGTTTCGCTGGTGGTAACCTCTTCAAGGAGATGAACTTGAGTGTAGGACTTGGCGAAATATGTGTTAAAGATGACATATCTATTGTTAAAAGTACTACTGTTTTTAGTAAGAATAGACCAGCTCTTGAGGCAACCACAAAATTTTATAGATCTTTTATTGTGAAAGATTGGTCTGAATGCAATCCAGTGCTAGATAAATTTGGAAATTTTATGGTTTTAAGTGTTGATGATAATGGCCATATAATACCTAAAATGTACACATGTAGAGCAGCATGTGATATTAGATTAAACAAAGATAATGCTGAAATAATATTATCGTCAACAAAGCTCAACCACTTCGAAATTGTCGGAACAACTTCGACATCAGGCTGGTTCAAAAACACAATAACAAACAATTTGGAACACACATGCGAACATGTGACCGTAAATTGTGGTCAGAAATCAGTAAAATTCCATGCATGCTTTAGACAACATAGGGGTTGTATAAGATTCTTTAAAGGGACATATATGCCATACTCAATGATTGAAGCAATGTGTGTTAACATAGAGCTAATAATTCTGACATTATATATCTTTGCTGCAATTATATTTGCATTAATCATAACAAAGAGTTATGTGGCATACCTGCTCCTGCCGTTATTTTATCCAGTGACATGGTTTTACGGAAAGGTTTATAAAAAGATTAATTCCTGCCCAAATTGTCTACTTGCATCTCATCCTTTCACCAGCTGCCCTAAAATCTGTATATGCGGTTCTAGATTTAGTTGCACAGAAGCTCTTAAGGTGCATAGAATGGGTAAGGACTGTTTAGGTTATAAATCTCTAAGCAAAGCTAGACAGATGTGTAAATCGAAAAGCTGGTCCTTTACAGCAGCTATATTAACTGGATTAATATTGATGGAATTTATCTCACCAATTGCAGGAGAGAGAATGTATAAGCTTGAGGAGTTAGCTGATGAGTTTATAAAGCTAACAGAGCAGGTAAATATTTTAGAAAGAGAAATGGAAGTCTTGAAGCAATCAATAATTGTTATGTTTGCAATCATTTTGGTATTGTTGCTTTTTGAAAATATGATATTCAACCGACTTTTCAGCACTTTTTATCGTTCTTGCTCCATGTGTGGTTTGATACATTATAGACCAGGACTCAAGGTTGATTTAACCAAAACTAATAGATGCGGTAGTTGCATCTGTGGATTCAATGAGCAGCAATCATCTGGTTTTGAATATGAAATATTTCTAAAGGATATGCACATCCAGAAAGAATCATGCAAATTTAGTCCAAGAGTAAACCACTTTAGGAATATTAAAGCTTTATTATTTGCACTTGTAATCTGTGCTACTATATATACAGTTTATGCAGATGAAGATTGCTTGTCTAAAGACATTAAAATAACATATCAAGAGTTGCATAATTGCATAGGCCCAAAGATAATGGGCGACACTTGTGTATCAAAGAATGAATTGTATTCTGATTTATTCTCAAAAAATCTAGTCACAGAATATGATAAAAAATATTTTGAACCTGATACTGTAAATGATCAATTCAACAAAATAGAGTTTGCCCAAGATGCACATAGAATGATACTATTAGAAAGAATACTTTACAAGACAGAATGTGAAATGCTAAGCTTAAAAAAGAACAGTGGACCTTATAATGTTGCCTGGCGCACATATTTAAAAAATCATAATATAGACCTATGCAGTAGGCACAACTATAAAATGATATGTCAGTGTATTAATACGCACTCTATGTGTAAAAATACAGATATAGATTACAACAAAGAGATCGAAACATATTATAAAAGCAATACTGCAGCCTATAGAGCTGACCTGAACACCATAATGGACACATTAAAAACGGCATTCAGAGGGCTTACAAAGGTCCTAATTGAAAATTATATAGAAAAAGATGACTCTGATGCTCTTAAGGCTTTATTCAGTAATATTACTGATTCTGTCCAGGACAATTATCAGATGATTGGAATATTGAAATTTGCCAGTAAGCTATTAGATATTAACCTTGGTAGATCCACCCGCTCAGCTCGTCATTCTATAATGACAAACGAAATTCCCAAATCTAATCCTTTTACTGATTACAGTTATTCCAATGTGAACATAAAGGAGTGCATGTCACCAGAGAGCTTGAAATGTTTTAAGAAGAGAGACAGTACACCGCATACAAACCACCTGCTTTGCAAGATAGACAGCAAATATAAAGCATTTGACTGGCCAGAGATAGAAACAATTCAAAAAGGTCAAAAATTGTGTCTTGGTGACAGTCATTGCAACTTGGAATTTACAGCCATAACTGCAGATAAGGTTATGTCATTAACTAACTGTTATAAGGAATCTTTCACTGCGCAACCAGCAGATATGCAGACTGGAATTAAAAAATGCTCAGCTGATGAAATTGGAGAATGTACAACACTTGAAGACAAGACATGGCCGATCGTATTCTGTGGTGGCAAATATTACTACTCTGATAGCAAAGAGCATGCCAAGGACGGTTCTATCAACAACTATTGTTTAACCAACAAATGCTCTGAACAACGTTTTCCAATACATGAAAATTGGTTTAAAAAATGTAATTGGGACAAAACCCACAAAGAATTTAGTACTATGAGACAGATAAACTATAATGATATAACTTCTTATAGAAAAGCAATAGAATCTGAGATAGGAACAGATTTGATGACACACCATTATAAGCCCACAAAGAACCTTCCGCATGTTGTGCCAAGGTATCATAGTATAGATGTACAAGGTACAGAATCAACAGAGGGTATTATCAATGGTTTCATACAAAATACAATACCTGCTATTAGTGGTCTAGGTGTCGGTTATCATCTGAATTTCAAAGGCAATCAGTTATTTGACATAGTTATTTTTGTGAAAAAGGCTGTATATAAAGCACAGTACCAGAAAGCATACACCACAGGTCCCAGTATATCCATAAATATTGAACACAATGAAAGATGCACAGGCCACTGCCCCGAAAAGATTCCTGCAAAAGAAGGTTGGCTAACATTTTCTAAAGAACATACTAGTTCTTGGGGATGTGAAGAATACGGCTGTCTTGCTATAGATACAGGCTGTCTATATGGTTCTTGTCAAGATGTCATACGCCCAGAATTAGATGTTTATAAGAAGATTGGTAGTGAAGCATCACTGATAGAAATATGCATAACTTTGCCTCATGAAACTTATTGCAATGATATGGATATATTAGAACCGATTATAGGTGATAAATTAAGTGCATCCTTTCAGAATACGCAGACTAACCAACTTCCGACCCTTATAGCTTATAAAAAAGGGAAAATATACACAGGTCAAATCAATGATATTGGAAATACAGCATTGCAGTGCGGCTCGATCCAAGTAATTAATGGGTCAACTATCGGAACTGGCAGCCCCAAATTCGATTATATATGCCATGCTATGAGAAGGAAAGATGTTATTGTAAGGAAGTGTTTCAATGACAATTATCAGTCATGCACTAGGTTAGAAAAACGAAATGACTTGATCCCTTATAGAAAAGGCGATGTCATTGAAGTATCAAAAACAGGATCAAACATGGGCCAAATGACATTTAAAATAGAACTAGGTGATATCAACTATAAAATATTCACTAAATCAATAGATCTTCAAATGTCTGGCATTTGTGCTGGGTGCATTGACTGTGCTGAAGGTATTTCATGCTCTATAAATGCTGAAGTGTCGGCCGAAACAGTCTGCCGTTGTAAAACAAACTGTGAAGATTTTATAAATAATATAGTGTTTTCACCACAAATCAAGAATTACAATATTAAAGTCCACTGTAAATCTAAAGTTGAAAAGATAATAGCACATATCTGTGGGAGAGACATCGATTTACAATTAACTGTTAAACCATACAATCAGAAGATAGATTTGTCGCAGTTAGATGAATCAAATTATATAAGGGAAGAGGATCTCCAGTGCGGGACATGGTTATGTAAAGTGCAAAAAGAGGGGGTTGATATTATATTCAAAGGATTATTTTCAGGCTTAGGGAGATACTGGACCATATTGATTTATTCAATTATAGGTGTGGTAATAATTGTGATATTAGTTTATATCCTGTTGCCCATAGGTCGGCTTTTAAAAGCATTCCTAATCAGACATGAAATAGAATATGCCATGGAGCAAAAAATCAAGTAGATTTAGCTAAAAAGGGTAGGCAGGCCTAAGATCAGGTATAAATAAAATCCATATAAATAAAGTCAAAAATTGTTGTTGGTAGCACACT" } -} \ No newline at end of file +} diff --git a/data/community/itps/orov/S/refseq/pathogen.json b/data/community/itps/orov/S/refseq/pathogen.json index 094f8379a..051cafd92 100644 --- a/data/community/itps/orov/S/refseq/pathogen.json +++ b/data/community/itps/orov/S/refseq/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/S/refseq", "reference accession": "NC_005777.1", - "reference name": "Oropouche virus, S segment" + "reference name": "Oropouche virus, S segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 44 - }, - { - "begin": 740, - "end": 754 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data/community/itps/orov/S/refseq/tree.json b/data/community/itps/orov/S/refseq/tree.json index cff18d293..48a901322 100644 --- a/data/community/itps/orov/S/refseq/tree.json +++ b/data/community/itps/orov/S/refseq/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -76,7 +76,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 44 + }, + { + "begin": 740, + "end": 754 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -3770,4 +3784,4 @@ "NSs": "MYHNGLHLHLIRRQHMWHLKLDTDKCSMLVLLESSSSTKRRPKMSYVRHRGPWLTLLLVGSNLQWLITISHSSSRIQCRTTVLPCTVCQDT*", "nuc": "AGTAGTGTGCTCCACAATTCAAAACATAAAAAGAAATTCCAATAATGTCAGAGTTCATTTTCAACGATGTACCACAACGGACTACATCTACATTTGATCCGGAGGCAGCATATGTGGCATTTGAAGCTAGATACGGACAAGTGCTCAATGCTGGTGTTGTTAGAGTCTTCTTCCTCAACCAAAAGAAGGCCAAAGATGTCTTACGTAAGACATCGAGGCCCATGGTTGACCTTACTTTTGGTGGGGTCCAATTTGCAATGGTTAATAACCATTTCCCACAGTTCCAGTCGAATCCAGTGCCGGACAACGGTCTTACCCTGCACCGTCTGTCAGGATACCTAGCGCGCTGGGCCTTTACCCAGATGCGATCACCAATTAAGCAAGCTGAGTTCAGAGCCACTGTAGTAGTGCCTTTGGCTGAGGTAAAGGGCTGTACTTGGAATGATGGTGACGCAATGTACCTGGGGTTTGCTGCTGGTGCTGAGATGTTCCTGCAAACATTCACTTTCTTCCCTTTGGTGATTGAGATGCATAGGGTTCTCAAGGATGGCATGGATGTCAACTTTATGAAGAAAGTCCTCCGGCAGAGGTATGGTCAAAAGACTGCCGAGCAATGGATGCGTGAAGAAATAGTTGCTGTAAGAGCAGCTTTTGAAGCTGTAGGCACTCTGGCCTGGGCCAGAACTGGATTCTCCCCAGCAGCAAGAGACTTCTTGCGCCAATTCGGAATTGACATATAGTGGAGCACACTACT" } -} \ No newline at end of file +} diff --git a/data/community/itps/orov/S/tefe/pathogen.json b/data/community/itps/orov/S/tefe/pathogen.json index 5dc72fe6e..4e75f98b6 100644 --- a/data/community/itps/orov/S/tefe/pathogen.json +++ b/data/community/itps/orov/S/tefe/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/S/tefe", "reference accession": "PP154170.1", - "reference name": "Oropouche virus ILMD_TF29 (tefe), S segment" + "reference name": "Oropouche virus ILMD_TF29 (tefe), S segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 43 - }, - { - "begin": 739, - "end": 944 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data/community/itps/orov/S/tefe/tree.json b/data/community/itps/orov/S/tefe/tree.json index 88f12f2c5..3936b5632 100644 --- a/data/community/itps/orov/S/tefe/tree.json +++ b/data/community/itps/orov/S/tefe/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -92,7 +92,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 43 + }, + { + "begin": 739, + "end": 944 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -5869,4 +5883,4 @@ "NSs": "MYHNGLHLHLIRRQHMWHLKLDTDKCSMLVLLESSSSTKRRPKMSYVRHRGPWLTLLLVGSNLQWLITISHNSSRIQCRTTVLPCTVCQDT*", "nuc": "GTAGTGTACTCCACAATTCAAAACATAAAAAGAAATTCCAATAATGTCAGAGTTCATTTTCAACGATGTACCACAACGGACTACATCTACATTTGATCCGGAGGCAGCATATGTGGCATTTGAAGCTAGATACGGACAAGTGCTCAATGCTGGTGTTGTTAGAGTCTTCTTCCTCAACCAAAAGAAGGCCAAAGATGTCTTACGTAAGACATCGCGGCCCATGGTTGACCTTACTTTTGGTGGGGTCCAATTTGCAATGGTTAATAACCATTTCCCACAATTCCAGTCGAATCCAGTGCCGGACAACGGTCTTACCCTGCACCGTCTGTCAGGATACCTAGCTCGCTGGGCCTTCACCCAGATGCGATCACCTATTAAGCAAGCTGAGTTTAGGGCCACTGTGGTGGTGCCTTTGGCAGAGGTGAAGGGTTGTACTTGGAATGATGGTGACGCAATGTACCTGGGGTTTGCTGCCGGTGCTGAGATGTTTCTGCAAACATTTACTTTCTTCCCTCTGGTGATTGAGATGCATAGGGTCCTCAAGGACGGCATGGATGTCAACTTCATGAAGAAAGTCCTTCGGCAGAGGTATGGCCAGAAGACTGCTGAACAGTGGATGCGTGAAGAAATAGTTGCTGTAAGAGCAGCTTTTGAGGCTGTAGGCACTTTGGCCTGGGCCAGGACTGGATTCTCCCCAGCAGCAAGAGACTTCTTGCGCCAATTTGGAATTGACATATAGTGGAGTACAATAAACAAACAGAGTATAATATAAAATACAAAAAAAGAAATAAAATAACAAAAATACAAAAAAACTAAAAAATATATAAAATAAACAAAAAAAGTGCGAAAGCACAAAAAAGAACTGCAGCTGTAATATTATAAAGGGTTGGGTGGTTGGGGAAAGCTATGTCATTTTAGAAAACGTATTTTTGAATTGGGAGCAC" } -} \ No newline at end of file +} diff --git a/data/nextstrain/orthohantavirus/andv/l/CHANGELOG.md b/data/nextstrain/orthohantavirus/andv/l/CHANGELOG.md index 247243235..894bac942 100644 --- a/data/nextstrain/orthohantavirus/andv/l/CHANGELOG.md +++ b/data/nextstrain/orthohantavirus/andv/l/CHANGELOG.md @@ -1,3 +1,10 @@ +## Unreleased + +- update outbreak name to 2026-Hondius +- make nucleotide default sequence view. +- add GPC amino acid substitutions + + ## 2026-05-11T18:59:50Z - Updating Nextclade dataset with the latest sequences and metadata from Pathoplexus diff --git a/data/nextstrain/orthohantavirus/andv/l/pathogen.json b/data/nextstrain/orthohantavirus/andv/l/pathogen.json index 15d39a799..5cecd2ed5 100644 --- a/data/nextstrain/orthohantavirus/andv/l/pathogen.json +++ b/data/nextstrain/orthohantavirus/andv/l/pathogen.json @@ -10,13 +10,12 @@ "changelog": "CHANGELOG.md" }, "schemaVersion": "3.0.0", - "defaultCds": "RdRp", "attributes": { "name": "Andesvirus (segment L)", "reference name": "Chile-9717869", - "reference accession": "NC_003468" + "reference accession": "NC_003468", + "experimental": true }, - "experimental": true, "alignmentParams": { "penaltyGapExtend": 1, "penaltyGapOpen": 8, @@ -60,4 +59,4 @@ "windowSize": 50 } } -} \ No newline at end of file +} diff --git a/data/nextstrain/orthohantavirus/andv/l/tree.json b/data/nextstrain/orthohantavirus/andv/l/tree.json index be2cabbdc..282720abe 100644 --- a/data/nextstrain/orthohantavirus/andv/l/tree.json +++ b/data/nextstrain/orthohantavirus/andv/l/tree.json @@ -1 +1 @@ -{"version": "v2", "meta": {"title": "Andes Virus L Segment (ANDV)", "updated": "2026-05-11", "build_url": "https://github.com/nextstrain/andv", "data_provenance": [{"name": "Pathoplexus", "url": "https://pathoplexus.org/"}], "maintainers": [{"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}], "display_defaults": {"map_triplicate": false, "color_by": "outbreak", "distance_measure": "div"}, "genome_annotations": {"RdRp": {"end": 6497, "seqid": "defaults/l/reference.gb", "start": 36, "strand": "+", "type": "CDS"}, "nuc": {"end": 6562, "start": 1, "strand": "+", "type": "source"}}, "colorings": [{"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "date", "title": "Collection Date", "type": "categorical"}, {"key": "region", "title": "Region", "type": "categorical", "scale": [["Africa", "#CEB541"], ["Europe", "#E39B39"], ["South America", "#E56C2F"]]}, {"key": "country", "title": "Country", "type": "categorical"}, {"key": "division", "title": "Admin Division", "type": "categorical"}, {"key": "host", "title": "Host", "type": "categorical"}, {"key": "abbr_authors", "title": "Authors", "type": "categorical"}, {"key": "dataUseTerms", "title": "Data use terms", "type": "categorical"}, {"key": "restrictedUntil", "title": "Restricted Until", "type": "categorical"}, {"key": "date_released", "title": "Release Date", "type": "categorical"}, {"key": "length", "title": "Length", "type": "continuous"}, {"key": "INSDC_accession", "title": "INSDC Accession", "type": "categorical"}, {"key": "PPX_accession", "title": "Pathoplexus Accession", "type": "categorical"}, {"key": "institution", "title": "Author Affiliations", "type": "categorical"}, {"key": "totalAmbiguousNucs", "title": "Ambiguous Nucleotides", "type": "continuous"}, {"key": "outbreak", "title": "outbreak", "type": "categorical"}], "filters": ["country", "division", "host", "abbr_authors", "clade_membership"], "geo_resolutions": [{"key": "country", "demes": {"Netherlands": {"latitude": 52.1326, "longitude": 5.2913}, "Paraguay": {"latitude": -23.3165935, "longitude": -58.1693445}, "South Africa": {"latitude": -28.8166235, "longitude": 24.991639}, "Switzerland": {"latitude": 46.8182, "longitude": 8.2275}, "Brazil": {"latitude": -10.3333332, "longitude": -53.1999999}, "Argentina": {"latitude": -37.052315, "longitude": -64.869142}, "Chile": {"latitude": -31.7613364, "longitude": -71.3187696}}}], "panels": ["tree", "entropy"], "extensions": {"nextclade": {"clade_node_attrs": [{"name": "outbreak", "displayName": "Outbreak", "description": "Annotation of recent outbreaks (to be refined)", "skipAsReference": false}]}}}, "tree": {"name": "NODE_0000000", "node_attrs": {"div": 0, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A26G", "G44A", "T47C", "G62A", "T77G", "G89T", "T91C", "C107T", "C131T", "C147T", "C155T", "G158A", "C173T", "T182C", "A188G", "A200C", "C210T", "T236C", "T245C", "C254A", "G260A", "A272C", "T285A", "T287A", "A290T", "A293G", "G294A", "A296T", "T297C", "G299A", "T308C", "C311T", "C312A", "A320T", "A323T", "A331T", "T332C", "T338A", "T344C", "T362A", "G368T", "A374C", "T395A", "G404A", "A413G", "G424A", "C428T", "C431T", "C432A", "A434G", "C444A", "A445G", "C446T", "G452T", "C457T", "T462G", "G470A", "G482A", "C486G", "A493G", "A506G", "T518C", "C536T", "C539T", "G542A", "G548A", "C554T", "G560A", "G563A", "C566T", "G572T", "T590C", "C591T", "A608T", "C617G", "A629G", "A632T", "A647G", "G656A", "T668C", "G677A", "C680T", "T695C", "G701A", "A704G", "C707T", "C713T", "C716T", "G737A", "A746G", "A749T", "C750A", "G751A", "A764G", "A770T", "G779A", "A792G", "A797G", "G803A", "A815G", "G823C", "T824C", "G836T", "G851A", "A852G", "T854G", "T864G", "A866G", "A872G", "C873T", "A878G", "C881T", "C884T", "A896G", "A899T", "A900C", "C914G", "T923A", "G929A", "A950T", "C971T", "A972G", "T983A", "G986C", "C990T", "A995G", "A1004G", "C1007T", "A1013T", "A1025T", "G1028A", "A1037T", "T1038C", "A1046T", "T1047G", "C1059T", "T1064C", "G1072A", "G1079A", "T1080C", "G1082A", "C1085A", "C1097T", "G1102A", "G1118A", "T1124A", "G1142T", "C1146A", "G1148A", "A1157T", "T1158C", "A1166G", "C1176T", "C1178T", "A1184G", "T1190C", "T1193G", "C1196T", "T1227C", "G1238A", "A1239G", "A1244T", "A1253C", "G1257A", "G1259T", "C1277T", "A1289T", "A1295T", "A1296G", "T1298G", "T1319A", "C1328T", "T1339C", "T1355C", "T1358C", "T1376A", "A1379T", "C1386T", "A1391G", "A1397G", "T1415A", "C1433T", "T1436A", "C1437T", "A1445G", "A1454C", "A1472T", "A1496G", "G1511T", "C1512T", "C1517T", "C1518A", "T1520A", "T1529C", "C1550T", "T1565A", "T1566C", "T1571C", "C1574A", "C1590T", "G1595A", "A1598T", "T1610C", "T1619C", "A1628T", "G1646C", "C1655T", "G1656C", "T1661C", "T1670C", "C1694T", "C1696T", "C1697A", "C1715T", "C1733T", "G1736A", "G1748A", "C1751T", "T1757A", "G1763A", "C1770T", "T1772C", "C1778A", "G1781A", "T1784A", "C1793T", "C1811T", "C1817A", "T1829A", "A1832G", "G1844A", "A1847C", "A1848G", "C1850A", "T1865C", "C1869T", "C1871A", "G1875A", "G1892A", "T1916A", "C1917A", "T1919G", "G1925T", "A1934T", "A1937C", "G1955T", "C1958T", "T1962C", "A1970T", "A1976G", "A1986C", "T1994C", "C2015T", "T2018A", "T2024A", "C2027A", "A2033G", "A2039G", "T2045A", "G2051T", "C2078T", "G2083A", "C2088A", "T2090A", "G2093A", "A2099T", "T2100C", "C2114T", "C2117T", "G2120A", "C2123T", "T2135G", "C2141T", "C2144A", "T2147A", "T2148C", "C2157A", "T2159G", "T2165C", "C2168T", "A2186G", "C2189T", "T2192A", "T2198A", "T2204C", "T2214C", "G2237C", "T2241C", "A2243C", "A2249G", "G2252A", "T2255A", "C2265T", "T2267A", "A2270G", "C2273T", "T2285A", "C2286A", "G2288A", "G2291A", "C2294T", "G2300A", "A2308C", "C2310A", "C2328T", "T2359C", "C2360A", "T2393C", "G2399A", "C2405T", "C2412T", "C2432T", "T2438C", "T2459A", "T2480C", "C2486T", "T2525C", "C2528A", "G2531A", "G2543T", "T2547C", "G2555A", "G2579A", "A2582T", "C2583T", "A2591G", "T2597A", "T2624C", "T2636A", "T2654A", "T2661A", "C2662T", "A2663T", "G2696A", "T2741A", "G2744A", "G2747A", "C2748A", "A2753G", "A2756G", "A2762T", "C2774T", "T2783A", "G2795C", "T2810A", "G2822A", "A2831G", "G2832A", "T2834C", "C2835T", "T2843A", "A2861G", "A2870G", "G2883A", "C2903T", "T2906A", "A2913G", "G2914T", "G2921A", "G2927A", "G2930A", "C2957T", "A2975G", "T2984A", "T2987C", "G2990A", "G2996A", "A3011T", "C3023G", "T3024C", "A3029T", "C3039T", "G3041A", "T3063A", "C3066A", "T3068A", "T3074A", "T3083A", "C3098T", "A3131T", "A3132G", "T3134A", "G3146A", "G3150A", "A3152G", "G3161A", "C3170T", "T3176G", "A3179T", "C3182T", "A3185T", "C3188T", "A3190T", "A3194T", "G3197A", "C3207T", "T3209A", "G3252A", "C3254A", "A3257T", "C3261T", "T3263G", "G3272A", "C3275A", "A3281G", "A3284G", "G3287A", "A3293T", "G3302A", "T3305C", "A3320T", "A3329T", "A3338T", "C3353T", "C3357T", "G3359A", "G3362A", "G3392A", "A3401T", "G3404A", "G3413A", "C3422T", "T3424A", "T3428C", "G3449A", "G3458A", "C3461T", "T3467C", "C3482T", "T3483C", "T3515A", "G3521A", "T3536A", "T3539A", "C3552T", "T3554G", "T3557A", "T3560A", "T3563C", "G3581A", "C3587A", "T3593C", "C3602A", "A3605G", "C3606T", "C3624T", "T3626G", "G3632T", "T3633C", "T3650C", "A3656T", "C3668T", "C3684T", "G3692A", "T3698A", "A3707G", "C3717T", "A3728C", "C3734T", "C3740T", "T3746G", "T3761A", "T3764A", "A3773G", "C3782T", "A3788T", "C3797T", "C3798T", "G3806A", "T3809A", "G3813T", "C3818T", "T3833A", "A3848C", "T3857A", "A3869C", "A3908G", "C3917T", "A3920C", "G3929A", "T3938A", "A3941G", "T3944A", "G3953A", "C3956T", "G3962A", "C4004T", "C4010T", "C4013T", "C4014A", "A4016G", "G4019A", "T4031C", "A4043G", "C4061T", "T4073A", "A4105G", "T4114C", "G4118C", "T4169C", "G4175A", "C4184T", "A4190G", "G4199A", "C4214T", "T4229A", "T4253A", "C4256T", "A4265G", "G4271A", "A4274G", "C4289T", "T4293C", "C4316T", "G4319A", "G4322A", "A4325T", "T4331A", "G4352A", "G4354A", "T4364G", "C4366G", "G4373A", "C4383T", "C4385G", "T4397G", "T4415A", "A4418G", "G4421A", "T4427A", "C4436T", "A4452C", "C4463A", "G4487A", "T4499A", "T4532A", "A4535T", "G4553A", "T4565C", "T4574A", "C4575A", "T4577G", "A4580T", "G4590A", "C4592A", "T4601C", "C4602T", "T4604A", "A4622T", "T4628C", "A4631T", "T4634A", "C4640T", "A4643G", "T4664A", "C4667T", "T4674C", "A4676T", "A4679G", "C4680T", "T4682G", "A4688T", "C4704T", "A4739G", "T4751G", "A4772T", "A4775G", "G4778C", "T4784A", "G4787A", "C4793T", "C4808T", "C4821T", "C4835T", "A4838G", "T4847C", "G4856A", "C4860T", "T4868A", "T4874A", "A4877G", "T4883C", "G4884A", "T4898A", "A4901C", "G4904A", "G4907A", "T4925A", "C4934T", "A4940G", "C4943T", "A4961T", "A4967C", "G4970A", "T4994A", "C4995T", "C5000T", "A5034C", "A5042G", "A5043C", "G5045A", "T5066C", "C5087T", "C5093T", "A5105T", "T5106C", "T5111A", "G5123T", "C5150A", "A5156C", "T5159C", "G5162A", "C5177T", "T5192C", "C5195T", "A5204T", "A5207G", "T5209C", "T5225A", "T5231A", "T5234C", "A5258T", "A5264T", "A5267G", "A5282G", "G5288A", "C5294A", "T5295C", "A5297G", "G5300A", "C5312A", "C5316A", "G5324A", "A5333G", "A5357G", "T5358C", "A5361G", "A5372T", "C5381T", "G5390A", "T5405A", "C5406A", "G5408A", "T5412C", "A5426G", "A5444G", "G5462T", "A5480G", "G5492A", "A5493C", "G5501A", "C5502T", "T5504A", "G5510A", "A5546T", "G5551C", "T5552A", "T5558C", "C5561T", "T5585G", "G5588A", "A5594T", "C5595A", "G5597A", "C5600T", "G5603A", "T5604C", "C5625T", "A5637C", "G5651T", "G5663C", "C5690T", "A5714T", "A5720T", "C5747T", "T5765C", "A5774T", "C5780A", "C5781T", "C5783G", "C5792T", "G5795A", "G5801A", "T5804A", "G5810A", "G5816A", "T5819C", "G5852A", "C5864T", "T5870A", "A5885G", "T5906A", "G5909T", "G5927A", "G5930A", "G5942A", "T5957A", "G5981A", "C5984T", "T5987C", "T5990A", "G5999A", "T6027C", "G6029T", "C6047T", "G6053T", "A6065T", "A6068T", "T6074C", "G6086A", "G6092A", "A6095T", "C6101T", "G6107A", "G6125T", "G6128T", "A6150C", "A6151G", "C6164T", "C6180T", "T6182G", "C6191T", "T6203C", "A6207G", "C6209T", "C6218T", "A6227T", "C6233T", "C6254T", "T6257C", "T6266A", "T6269A", "C6273T", "T6276C", "A6284T", "T6291C", "G6293A", "A6299G", "C6300T", "T6302A", "T6332A", "C6342A", "T6353G", "A6382G", "A6386G", "A6395C", "C6413T", "T6419C", "A6422T", "A6425G", "C6434T", "G6452A", "G6464A", "C6467T", "G6470A", "C6476T", "A6496G", "G6497A", "T6502A", "C6509T", "G6533A", "T6555G", "C6560T"], "RdRp": ["T18S", "V53I", "S84T", "V87I", "Y99F", "I126M", "G130E", "Q133K", "H137S", "T141I", "S143A", "P151T", "K153R", "R239K", "Q245H", "K253E", "S263T", "S273G", "L277E", "N313D", "S338A", "R346K", "R356K", "V408I", "I420T", "I435T", "A437V", "S438G", "D450E", "A491S", "A541S", "T554I", "I605V", "V614M", "R683K", "I747V", "Q759K", "I775M", "D780I", "A837T", "L838Q", "Q875H", "V933I", "V950I", "S960V", "L1010I", "E1032D", "N1033E", "E1039T", "N1052A", "V1073I", "F1130Y", "N1258K", "A1260S", "V1264I", "N1357S", "L1360G", "T1444S", "L1514M", "V1519I", "D1541E", "T1593A", "E1644D", "V1745I", "R1939K", "I2023V", "K2039R", "D2106E", "K2116R"]}, "labels": {"aa": "RdRp: T18S, V53I, S84T, V87I, Y99F, I126M, G130E, Q133K, H137S, T141I, S143A, P151T, K153R, R239K, Q245H, K253E, S263T, S273G, L277E, N313D, S338A, R346K, R356K, V408I, I420T, I435T, A437V, S438G, D450E, A491S, A541S, T554I, I605V, V614M, R683K, I747V, Q759K, I775M, D780I, A837T, L838Q, Q875H, V933I, V950I, S960V, L1010I, E1032D, N1033E, E1039T, N1052A, V1073I, F1130Y, N1258K, A1260S, V1264I, N1357S, L1360G, T1444S, L1514M, V1519I, D1541E, T1593A, E1644D, V1745I, R1939K, I2023V, K2039R, D2106E, K2116R"}}, "children": [{"name": "NODE_0000001", "node_attrs": {"div": 0.0252107, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C74G", "C88G", "G192A", "A198C", "T210C", "T216C", "G221C", "T269A", "T348C", "G350C", "A365G", "A395G", "G401A", "A477T", "T512G", "T605C", "T636A", "T637C", "C671T", "A686C", "A698G", "C824A", "A842G", "T873G", "A938C", "C956T", "T977A", "G1023A", "A1082T", "A1115G", "T1116G", "C1191T", "A1205T", "A1293G", "T1346A", "C1355A", "T1361A", "A1362C", "C1385G", "G1412A", "T1493C", "T1508A", "A1625T", "C1679A", "A1682T", "A1781T", "G1961A", "T2036A", "T2049C", "A2066G", "T2069A", "G2102A", "C2156A", "C2165T", "A2180G", "A2246T", "T2354A", "A2384G", "A2462G", "C2504T", "G2544A", "T2548A", "C2621A", "G2648A", "A2660T", "T2662A", "A2699G", "G2858A", "A3038G", "A3062C", "C3071T", "T3167C", "A3174G", "A3175G", "G3176A", "C3267A", "A3287G", "A3488T", "A3527T", "T3713A", "G3773T", "T3785A", "T3800A", "T3875A", "T3899C", "T3902A", "A3944T", "A3953G", "A3974G", "G3995A", "T4113G", "C4114G", "T4157A", "T4223A", "C4293T", "A4354C", "T4440C", "C4526T", "A4547T", "C4562A", "A4700T", "T4754A", "A4812G", "A4841T", "G4850A", "G5012A", "T5016C", "G5018T", "C5088T", "T5093G", "A5129G", "G5183T", "C5209T", "T5262C", "C5309T", "A5364C", "G5432A", "T5450A", "T5456A", "C5483T", "C5489A", "T5498A", "A5550T", "A5615T", "A5639C", "A5669T", "T5771A", "A5786C", "T5835C", "G5851A", "T5903C", "C6011T", "A6083G", "C6153T", "A6188T", "C6248T", "A6320T", "A6410T", "C6453T", "T6462C", "A6482G", "C6491T", "A6533T"], "RdRp": ["D13E", "I148L", "T151A", "L201T", "V330I", "S361A", "L371I", "I402V", "T420V", "I421V", "N443H", "E549D", "T1039K", "N1047G", "E1361D", "E1555D"]}, "labels": {"aa": "RdRp: D13E, I148L, T151A, L201T, V330I, S361A, L371I, I402V, T420V, I421V, N443H, E549D, T1039K, N1047G, E1361D, E1555D"}}, "children": [{"name": "PP_006W1X5|13796_L|Argentina|1990|Argentina/1990-XX-XX", "node_attrs": {"div": 0.150416, "strain": {"value": "PP_006W1X5|13796_L|Argentina|1990|Argentina/1990-XX-XX"}, "accession": "PP_006W1X5", "author": {"author": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J.", "value": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J."}, "date_released": {"value": "2024-04-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Shedroff et al."}, "INSDC_accession": {"value": "PP058739.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP058739.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W1X5.1", "url": "https://pathoplexus.org/seq/PP_006W1X5.1"}, "country": {"value": "Argentina"}, "date": {"value": "1990-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6623}, "host": {"value": "mice and others"}, "institution": {"value": "Centers for Disease Control and Prevention, Viral Special Pathogens Branch"}}, "branch_attrs": {"mutations": {"nuc": ["T1G", "A2G", "G27T", "T29G", "C47T", "A54G", "C60A", "T68C", "C91T", "A92T", "T99C", "A101T", "A110T", "C117T", "G119A", "C128G", "A138C", "A140G", "C146T", "T152A", "T155C", "A158G", "A167G", "T185C", "T203A", "T209G", "A212G", "C230T", "A254G", "G263A", "T284A", "G293A", "A294C", "C305T", "A314G", "A341T", "C344T", "C350T", "G356A", "T359C", "T368C", "A377T", "T380A", "A392T", "A411C", "G413A", "G416A", "T428A", "C429A", "T440G", "G443A", "G467A", "T476C", "A479G", "A485G", "A495C", "C503T", "T504G", "C505G", "G509A", "A524T", "A530T", "T557C", "C558A", "A560G", "A563G", "T569C", "T578G", "G581A", "C584T", "A593G", "T595C", "C596T", "T602C", "T608A", "A613T", "A636G", "A638T", "A650T", "T653A", "T654C", "A656G", "A662T", "C668T", "A674G", "C699T", "A731T", "C738T", "A740G", "T749C", "G752T", "C768G", "A769G", "T773C", "A779G", "A794G", "G797A", "A809C", "C812T", "C821A", "A827T", "T836C", "T839A", "A845T", "G853A", "G854A", "C855T", "A856G", "G863T", "T865A", "T870A", "T871A", "G873A", "G875A", "T884C", "T899C", "A902T", "T908C", "T909C", "C912T", "A923G", "A929T", "A932G", "A947G", "T950G", "T962A", "G968A", "G980A", "A983C", "C986G", "T990C", "A992T", "G1004A", "T1013G", "C1032T", "T1034A", "T1046C", "A1051T", "T1058C", "G1061A", "C1065T", "T1067A", "G1073A", "G1106T", "C1109T", "A1118T", "A1124T", "G1133A", "A1160T", "A1175T", "T1176C", "C1190T", "T1199C", "T1202A", "G1208A", "G1217A", "T1220G", "A1226C", "C1227A", "C1241A", "T1244A", "C1261A", "A1268G", "T1289A", "A1291C", "G1298A", "G1301A", "G1304A", "A1313T", "T1316C", "A1322G", "A1329G", "A1337G", "A1338G", "C1345T", "A1347T", "A1350G", "G1352A", "C1358T", "A1361G", "T1364C", "T1389C", "T1394C", "C1413T", "A1421G", "T1431A", "G1439A", "A1461T", "A1476C", "A1478G", "C1484T", "A1490G", "A1491G", "G1506T", "T1517C", "A1518C", "T1523G", "C1566T", "G1568A", "A1583T", "T1604C", "A1614C", "G1616T", "T1640C", "T1655C", "A1658T", "C1661T", "T1664C", "T1673A", "T1691A", "T1694A", "A1697T", "T1709A", "G1712A", "A1730G", "A1736G", "A1739G", "A1769T", "C1772A", "A1778C", "A1814G", "A1817C", "T1823C", "C1826A", "A1829C", "G1832A", "T1856C", "A1883G", "G1886A", "A1892G", "C1893T", "A1901T", "T1910C", "C1913T", "A1916T", "A1928C", "A1931T", "A1940G", "T1943A", "C1949T", "T1955C", "G1959A", "G1964T", "T1965C", "A1967G", "A1988C", "A1991T", "A2003G", "G2006T", "C2016T", "A2024T", "T2051C", "A2054C", "A2057G", "A2069G", "C2070A", "T2087C", "A2090G", "T2094C", "A2096T", "A2102T", "A2105C", "T2111C", "T2114G", "T2123A", "G2135T", "A2150G", "G2160A", "T2165G", "G2186A", "C2204A", "T2210C", "C2213T", "T2228A", "C2237T", "T2240C", "C2241T", "C2243G", "A2274G", "A2288G", "G2297A", "G2298A", "A2299C", "C2308A", "A2309G", "T2327C", "T2328C", "A2330T", "C2339T", "A2351T", "C2359T", "A2360G", "A2361G", "A2362C", "A2369G", "A2378G", "C2388T", "T2390G", "G2411A", "A2414G", "A2420C", "G2426A", "A2435G", "C2438T", "T2468A", "C2474A", "A2483G", "C2514A", "C2516A", "C2522A", "C2526T", "A2528G", "A2534G", "T2543C", "G2549A", "T2570G", "T2573A", "T2582C", "A2598C", "A2615C", "C2624T", "T2633C", "A2636T", "C2658A", "T2663C", "A2665G", "A2669C", "T2675C", "G2678A", "T2681A", "T2684G", "G2687A", "A2690G", "C2693T", "A2705G", "A2708T", "A2717T", "C2726T", "A2735G", "A2744G", "G2753A", "G2756A", "T2768C", "A2780T", "G2789A", "T2792A", "T2813A", "T2816C", "T2819G", "T2825C", "A2827G", "A2852G", "A2855T", "C2865T", "T2867A", "G2870A", "T2894C", "T2903C", "A2912G", "C2918A", "A2919C", "A2920G", "C2928A", "A2930G", "T2945C", "C2987T", "A2997C", "A2999G", "A3014C", "G3023A", "C3024T", "C3035T", "A3044G", "T3053A", "A3065T", "G3080A", "T3098A", "A3104G", "A3107G", "C3110T", "T3122C", "T3155C", "A3176T", "G3177A", "T3182A", "T3188C", "T3194G", "C3203T", "A3233T", "T3248A", "T3251C", "A3299G", "T3308C", "T3350C", "A3362G", "T3365A", "T3374C", "T3389C", "T3422C", "C3428T", "A3458G", "T3461C", "T3470C", "C3471T", "T3482C", "A3485T", "T3488C", "A3491G", "T3503C", "A3506G", "A3530G", "A3539T", "A3548G", "T3572C", "T3578A", "T3596C", "A3602T", "G3605A", "A3614T", "T3624C", "T3668C", "A3671G", "A3677T", "T3690C", "A3692T", "C3701T", "A3704T", "G3707A", "T3717C", "A3719T", "A3723G", "A3725T", "C3728T", "T3729C", "A3743G", "G3749A", "G3752A", "G3755A", "A3764G", "A3791T", "G3792T", "A3809G", "A3821G", "A3824T", "A3827T", "A3830C", "C3831T", "C3845T", "C3848T", "G3863A", "C3869A", "T3878C", "G3884T", "G3896A", "A3938G", "A3939C", "T3947G", "T3950C", "T3965G", "G3980A", "A3989G", "A4001T", "T4017C", "G4025A", "T4034C", "T4064A", "T4067C", "G4071T", "T4097C", "T4103A", "C4118T", "T4127C", "A4130G", "G4139T", "C4145T", "A4162C", "T4163C", "C4169T", "A4181G", "G4190C", "A4199G", "T4205C", "T4208G", "C4211T", "T4217C", "A4220T", "A4238G", "C4248T", "T4250A", "T4259C", "C4290A", "G4292A", "T4325G", "A4331T", "T4337A", "T4346C", "A4353T", "T4355A", "C4376T", "T4382C", "T4383C", "A4390G", "A4409T", "A4442T", "A4448G", "A4451T", "C4452A", "A4463T", "A4481G", "A4494G", "T4496G", "C4508T", "T4514C", "A4520G", "G4529A", "C4531T", "A4532T", "T4535A", "G4556C", "A4613T", "C4616T", "C4619T", "G4625T", "T4631A", "T4640C", "T4641C", "G4643T", "T4658G", "A4661T", "T4676C", "G4679A", "C4703A", "C4712T", "A4721T", "G4733A", "G4739T", "G4741A", "G4751T", "G4760A", "A4766G", "C4778T", "A4781G", "A4787G", "A4790T", "T4796C", "T4799C", "T4802C", "G4811A", "A4820C", "T4826C", "A4836C", "G4838A", "A4844G", "A4859G", "A4865G", "G4877A", "C4883T", "A4884G", "T4886C", "C4901T", "A4904G", "T4913C", "T4916A", "A4925T", "C4926A", "A4931T", "T4955C", "C4967T", "A4979G", "A4988C", "A4994G", "G4997A", "A5009G", "A5015C", "G5028A", "T5039C", "T5054A", "T5069A", "A5078G", "T5081C", "T5084A", "T5087G", "T5094C", "A5096G", "T5105C", "A5111C", "G5121A", "T5123C", "A5144C", "A5147G", "T5153C", "A5174T", "A5189C", "A5210C", "C5222T", "C5223T", "A5231C", "G5268A", "A5284G", "A5292G", "T5306G", "T5325C", "C5328A", "G5330A", "T5331C", "G5348T", "G5357A", "C5358T", "A5360G", "G5361A", "T5363A", "A5376C", "A5405T", "A5408G", "A5414G", "G5417T", "T5418C", "A5429T", "T5435A", "T5438C", "G5444A", "G5460A", "T5462A", "A5465T", "T5471C", "A5489G", "C5493A", "A5501C", "T5507A", "A5513G", "G5516A", "C5517A", "T5522A", "T5525C", "T5543C", "A5549G", "T5564A", "A5588G", "T5600C", "T5601C", "A5603T", "A5606T", "A5609T", "T5618C", "A5624T", "T5625C", "G5627T", "A5634G", "A5645G", "G5654A", "C5663G", "C5694T", "T5702C", "A5708T", "T5714A", "A5717T", "T5720A", "C5724T", "T5726G", "A5729G", "T5738C", "T5748C", "A5750G", "T5756A", "C5759A", "A5762C", "C5765T", "T5768G", "T5774C", "A5780T", "T5792G", "T5798C", "A5804T", "T5813C", "C5819T", "C5832T", "A5834G", "A5840T", "A5852T", "C5861T", "A5870T", "G5876T", "T5897A", "A5906T", "T5921A", "A5926G", "T5948C", "T5960C", "A5967G", "A5990T", "C5997T", "T6008A", "A6017G", "A6023T", "C6027T", "T6029A", "G6035A", "T6038C", "T6050C", "T6065C", "T6068C", "C6074A", "T6084C", "A6086T", "T6101A", "A6102G", "T6104A", "T6110A", "A6115G", "G6116A", "G6133A", "A6134G", "C6150A", "G6152A", "A6155G", "A6158G", "T6170C", "C6179A", "G6182A", "A6197T", "G6207A", "A6215C", "T6233C", "A6239T", "C6244T", "A6245G", "A6260T", "A6261G", "C6262T", "A6263C", "A6269T", "A6275G", "T6281C", "T6284G", "T6311A", "A6326G", "A6330G", "A6335G", "A6344G", "C6347T", "A6349G", "T6354C", "A6356T", "A6371G", "A6372G", "T6380C", "A6383G", "G6386A", "G6398A", "T6413C", "T6422C", "C6428T", "T6431A", "G6437A", "G6455A", "C6456A", "A6459C", "T6467C", "T6479A", "A6488T", "T6498-", "G6500C", "T6504G", "T6507G", "A6513T", "T6514G", "A6521T", "G6526A", "A6528G", "A6530G", "T6531A", "T6532C", "G6536T"], "RdRp": ["I7V", "Q9K", "I87L", "M126L", "L132I", "I154L", "S157G", "V187A", "Y193F", "T201A", "K239N", "H245G", "G273E", "H274C", "Q276H", "L279K", "Q280K", "Y339F", "D395E", "L398I", "A409E", "K419T", "I432V", "T435A", "G438C", "M439V", "S466T", "I476L", "S486G", "S541P", "E642K", "H693Q", "V709I", "E755T", "E772D", "N776A", "I780D", "H875N", "S876N", "K877R", "K931R", "K962R", "G1048S", "A1052I", "I1230V", "A1253S", "I1264V", "A1346S", "H1356Q", "N1376T", "N1452S", "I1487V", "A1499V", "E1530D", "R1569K", "V1665I", "V1696I", "K1750R", "I1753V", "V1809I", "P1828T", "I1850M", "I1867V", "N1919K", "K1939N", "K1964R", "I1978V", "D2022E", "K2027R", "R2033K", "T2070M", "T2076V", "T2099A", "K2105R", "T2113A"]}, "labels": {"aa": "RdRp: I7V, Q9K, I87L, M126L, L132I, I154L, S157G, V187A, Y193F, T201A, K239N, H245G, G273E, H274C, Q276H, L279K, Q280K, Y339F, D395E, L398I, A409E, K419T, I432V, T435A, G438C, M439V, S466T, I476L, S486G, S541P, E642K, H693Q, V709I, E755T, E772D, N776A, I780D, H875N, S876N, K877R, K931R, K962R, G1048S, A1052I, I1230V, A1253S, I1264V, A1346S, H1356Q, N1376T, N1452S, I1487V, A1499V, E1530D, R1569K, V1665I, V1696I, K1750R, I1753V, V1809I, P1828T, I1850M, I1867V, N1919K, K1939N, K1964R, I1978V, D2022E, K2027R, R2033K, T2070M, T2076V, T2099A, K2105R, T2113A"}}}, {"name": "NODE_0000002", "node_attrs": {"div": 0.0643094, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A104G", "C137A", "A218T", "C236A", "A254T", "T290C", "C344A", "A410G", "T447C", "C480A", "A494G", "G506A", "A575T", "A599G", "G623A", "C692T", "A740T", "T762C", "G764C", "A818G", "A860G", "C891A", "T915C", "G917A", "A944C", "A947T", "A1022T", "C1064T", "A1090T", "T1178A", "G1193A", "T1247G", "A1262T", "A1275G", "A1334G", "G1344A", "A1347G", "A1370C", "T1494C", "G1496T", "C1571T", "C1646T", "G1649A", "A1650G", "A1652T", "C1656T", "T1715G", "T1770C", "T1805A", "C1862T", "A1895T", "T1922C", "G1985A", "C1986A", "A2072G", "T2087G", "A2120T", "A2126T", "T2138G", "T2229C", "G2231T", "A2307G", "T2372G", "G2373A", "T2375G", "T2453A", "A2498T", "A2561T", "G2585A", "T2879A", "A2882G", "A2885G", "A2930T", "A3146T", "A3173T", "A3189G", "C3218T", "T3347A", "G3407A", "C3467T", "G3509T", "A3545T", "G3554A", "C3593T", "A3659T", "T3708C", "A3710T", "A3807C", "A3821C", "G3825A", "A3890T", "T3932C", "A3959T", "A4238T", "T4328A", "T4343C", "A4353G", "C4358T", "G4364A", "A4400G", "T4403C", "A4517G", "C4601T", "A4668C", "A4709G", "C4722T", "A4740C", "T4757A", "G4775A", "C4847A", "A4859C", "A4922T", "C4929T", "A4931G", "A5006G", "A5051G", "C5208T", "G5297A", "A5312T", "A5354G", "A5495G", "C5558T", "A5648T", "C5705T", "T5711A", "A5795G", "C5825T", "C5868T", "A5915T", "C5924T", "A6146T", "C6149A", "T6219C", "A6221T", "C6267T", "A6314T", "A6335C", "T6443A", "T6450C", "A6452C", "A6464T", "A6485C", "C6516T", "G6522T"], "RdRp": ["V19A", "P149T", "E277V", "Q280E", "Y352F", "D404E", "I414V", "V437T", "I539V", "V747I", "K758A", "M775T", "I950M", "K1258Q", "V1430I", "I1776V", "V2023I", "I2058V"]}, "labels": {"aa": "RdRp: V19A, P149T, E277V, Q280E, Y352F, D404E, I414V, V437T, I539V, V747I, K758A, M775T, I950M, K1258Q, V1430I, I1776V, V2023I, I2058V"}}, "children": [{"name": "NODE_0000003", "node_attrs": {"div": 0.131006, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G26A", "A44G", "A65G", "T83A", "C117T", "T122C", "T191C", "T215C", "T218C", "A243G", "T278C", "C281T", "T296C", "T398C", "A399C", "A401T", "G416A", "A455G", "A456G", "A461G", "A464T", "T473C", "T488A", "A533T", "A542T", "T545A", "A548G", "A618C", "T632A", "A728G", "A731C", "C758T", "A809C", "C821A", "A824T", "G828A", "T830C", "A832G", "T833C", "T836C", "A845C", "G864A", "G872A", "A877G", "A887G", "C900A", "G920A", "A923C", "G927A", "T941C", "T989C", "A1019T", "G1055A", "T1058C", "A1070T", "A1083G", "T1088C", "T1091C", "G1106A", "G1130C", "T1152C", "A1160T", "T1181A", "A1187G", "T1211C", "A1229T", "T1244A", "C1250T", "C1253A", "T1259A", "C1317T", "A1319G", "A1329G", "A1337G", "C1353G", "A1376G", "G1385A", "T1400C", "T1406C", "C1413T", "A1430G", "T1433A", "T1437C", "A1490G", "T1499C", "A1526G", "C1529T", "A1538G", "T1550C", "G1556T", "A1562G", "A1580T", "A1592G", "T1628A", "A1634G", "T1647C", "A1658T", "A1679T", "T1694G", "T1724A", "T1737C", "A1739C", "T1745A", "A1763G", "A1784T", "A1803G", "T1811C", "A1814G", "C1826A", "T1839C", "A1841T", "C1847T", "T1856C", "A1892G", "C1914T", "A1916G", "T1944C", "G1946T", "A1973G", "C1979T", "A2003T", "A2012C", "C2016T", "T2021C", "G2033A", "C2037T", "G2039A", "A2057G", "A2150T", "A2178C", "A2192T", "C2213T", "A2216G", "A2306G", "A2309T", "T2324A", "G2333A", "C2339T", "T2342C", "A2362G", "A2366G", "G2372A", "G2402A", "A2420T", "C2429T", "A2435G", "G2444A", "A2447T", "A2456G", "C2480T", "T2486C", "C2492T", "T2507C", "A2513C", "C2522A", "T2540A", "T2543A", "G2568T", "A2579G", "T2588A", "A2657G", "T2660C", "A2672G", "A2676C", "G2678A", "G2687A", "A2708C", "A2738C", "A2747T", "G2789A", "A2801G", "A2804G", "A2810C", "A2828G", "A2855T", "A2876T", "A2900C", "C2918T", "T2930C", "A2936G", "T2951A", "A2963G", "A2972T", "G2975T", "T2981C", "A2997C", "T3002C", "T3011A", "A3026T", "C3032T", "A3033G", "T3056A", "G3101A", "T3105C", "A3107C", "T3119A", "T3137C", "T3149G", "A3164T", "T3179A", "T3188A", "A3200G", "G3215A", "T3219C", "A3221T", "A3236T", "A3239G", "T3248A", "A3252G", "T3257C", "G3263A", "G3284A", "T3293A", "A3296G", "A3302T", "A3314G", "T3320C", "T3338C", "T3353A", "T3365A", "A3377C", "A3398T", "A3416T", "A3419T", "A3440T", "A3473G", "C3483T", "A3506G", "A3512T", "G3518A", "A3521G", "A3530T", "T3551C", "T3590A", "T3596G", "T3632C", "A3635T", "A3653G", "A3677T", "G3680A", "A3719G", "A3737T", "G3746T", "T3788A", "T3797C", "G3803A", "T3839A", "T3866A", "A3914T", "C3920T", "A3925T", "A3938C", "T3950C", "T3965C", "T3966C", "A3968G", "T3977C", "T4040C", "G4043A", "G4058A", "T4067A", "A4070G", "A4073T", "T4085C", "T4103C", "A4115T", "C4118T", "T4136A", "C4145T", "T4151C", "A4160G", "T4172C", "T4217A", "A4229T", "G4235A", "C4251A", "T4259C", "G4274A", "T4355A", "T4388C", "T4391C", "A4394C", "C4395T", "A4442G", "A4448G", "A4451G", "G4454A", "G4460A", "A4466G", "A4472T", "T4490A", "A4493G", "T4547C", "G4583T", "T4607C", "G4625A", "C4628A", "T4649A", "T4658A", "T4667C", "T4688C", "A4708G", "A4721T", "G4742A", "T4772A", "T4793C", "T4826A", "A4832C", "T4835A", "T4841G", "A4856G", "G4862A", "A4907G", "A4937T", "G4940A", "A4941G", "G4958A", "C4967A", "T4976A", "A4978G", "A4988T", "G5036T", "G5042A", "A5045G", "T5057C", "A5072G", "C5091T", "C5106T", "A5135G", "C5142A", "A5145C", "A5147G", "A5150T", "C5156A", "C5159A", "A5165G", "A5174T", "T5219A", "A5231T", "C5234T", "T5237C", "T5246C", "G5268A", "T5273C", "A5303T", "T5306C", "A5324G", "G5330T", "C5334T", "A5351T", "A5366T", "A5376C", "A5393G", "C5396A", "T5399C", "A5402G", "G5453A", "T5471A", "A5474C", "C5505A", "T5507G", "A5510C", "A5519T", "T5522C", "C5534T", "A5540C", "A5542C", "A5552T", "T5561C", "T5582C", "A5606T", "A5645G", "A5657T", "A5660T", "C5663T", "G5687A", "T5702A", "A5708G", "A5717C", "G5723A", "T5727C", "A5732G", "C5735T", "T5738C", "T5798C", "T5807A", "A5816G", "C5861T", "A5882G", "T5909A", "A5930G", "T5984C", "A5996C", "A5999G", "A6041T", "T6053C", "A6062G", "C6074A", "T6077A", "T6080C", "T6095A", "T6110A", "A6113G", "G6116A", "T6128A", "A6131T", "G6143A", "G6152T", "T6173A", "A6176G", "T6180C", "A6194G", "C6203T", "T6209A", "T6227A", "A6242G", "G6256A", "C6257T", "A6272C", "T6273C", "A6293G", "G6317A", "A6350G", "A6360G", "A6368T", "A6371G", "A6383G", "C6395T", "A6401T", "A6404G", "C6411T", "T6413A", "T6416A", "C6419T", "G6437A", "A6458T", "A6470C", "G6496A", "A6497G", "A6502T", "T6523C", "T6533-", "G6552A"], "RdRp": ["I70V", "I141V", "A265S", "N266S", "V277M", "K281R", "V298I", "I350V", "I432V", "P440A", "S491A", "T590A", "N776S", "I780K", "A845S", "S876N", "N1000D", "A1052V", "I1073V", "E1089D", "Y1297F", "S1440A", "K1558R", "V1617I", "I1636V", "D1644E", "K1648R", "N1836T", "I1850M", "S2074N", "I2109V"]}, "labels": {"aa": "RdRp: I70V, I141V, A265S, N266S, V277M, K281R, V298I, I350V, I432V, P440A, S491A, T590A, N776S, I780K, A845S, S876N, N1000D, A1052V, I1073V, E1089D, Y1297F, S1440A, K1558R, V1617I, I1636V, D1644E, K1648R, N1836T, I1850M, S2074N, I2109V"}}, "children": [{"name": "NODE_0000004", "node_attrs": {"div": 0.172185, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G104A", "C114T", "A140G", "C146T", "T173C", "C230T", "A236G", "C272A", "A302G", "C332T", "C390A", "G467A", "G494A", "C503T", "G512A", "A530T", "T533C", "T554A", "C584T", "C596T", "G617A", "A620T", "C668T", "A674G", "T680C", "C695T", "C699T", "T710C", "A737G", "G746A", "T749C", "C776T", "C836A", "G860A", "T881C", "C944A", "G968A", "T974C", "A1010G", "T1067G", "T1100C", "A1103G", "A1214G", "A1226G", "A1283G", "G1301A", "A1310G", "G1334T", "G1397A", "C1454T", "C1566T", "T1604C", "T1607C", "A1628G", "A1643T", "T1703C", "G1712A", "T1728C", "T1733C", "T1740C", "G1742A", "A1748G", "T1784C", "T1799C", "A1817G", "T1823C", "A1842C", "T1866C", "C1937T", "T1952A", "C1962T", "C1994T", "G1997A", "A2102G", "T2132C", "T2150C", "G2180C", "T2189C", "T2192C", "A2222G", "T2265C", "G2297A", "A2357G", "A2399G", "A2414G", "A2510G", "A2555G", "A2597C", "T2639C", "T2675A", "T2684A", "T2720C", "T2751C", "T2835C", "A3008G", "T3029A", "T3071C", "T3089C", "A3104G", "A3134T", "T3164C", "T3191A", "T3224C", "A3254T", "T3258C", "A3260G", "G3281A", "G3287A", "T3290C", "A3353G", "T3357C", "T3383C", "C3428T", "T3530C", "C3563T", "A3581T", "T3611G", "A3686G", "T3689C", "G3755A", "C3821T", "A3824T", "T3854C", "A3866G", "C3869T", "T3878C", "T3923C", "C3932T", "T3956C", "G4016A", "G4025A", "C4031T", "A4082G", "A4094G", "T4106C", "T4110C", "T4133C", "T4154C", "T4163C", "C4169T", "T4173C", "A4175C", "C4176T", "T4178A", "A4247G", "A4253G", "A4271G", "A4286G", "A4298G", "C4310A", "T4349C", "A4370G", "T4383C", "A4433G", "A4454T", "T4484C", "T4496A", "A4505G", "A4520G", "A4538G", "T4541C", "C4565T", "C4616T", "C4619T", "A4658G", "A4673G", "C4712A", "A4724G", "A4772G", "G4823A", "A4874T", "C4883T", "A4898T", "C4901A", "T4922C", "A4925G", "A4928C", "A4970G", "A4976G", "A5040C", "T5060C", "C5066T", "T5087C", "A5096G", "A5111G", "T5123A", "A5162G", "T5174C", "A5186G", "C5192T", "G5207A", "A5219G", "C5222T", "C5295T", "G5417A", "A5420G", "T5438A", "G5480A", "G5516A", "T5591C", "A5678G", "C5694T", "A5744G", "A5834G", "T5843C", "C5867T", "T5879C", "T5975C", "G5978A", "A6023T", "T6026C", "A6074G", "A6077G", "A6086G", "A6137G", "T6138C", "A6155G", "T6164C", "T6185C", "G6212A", "T6218C", "T6221C", "T6251C", "T6314C", "C6335T", "C6347T", "G6365A", "A6372G", "G6386A", "A6413G", "T6431C", "T6434C", "G6461A", "G6499A", "T6507C", "G6549T", "A6552C", "A6554G", "A6556G", "C6557A", "T6558A", "T6560A", "T6561G"], "RdRp": ["S265T", "E1033D", "I1430V", "M1981I", "T2113A"]}, "labels": {"aa": "RdRp: S265T, E1033D, I1430V, M1981I, T2113A"}}, "children": [{"name": "PP_006W1V9|15631_L|Argentina|1998|Argentina/1998-XX-XX", "node_attrs": {"div": 0.190469, "strain": {"value": "PP_006W1V9|15631_L|Argentina|1998|Argentina/1998-XX-XX"}, "accession": "PP_006W1V9", "author": {"author": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J.", "value": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J."}, "date_released": {"value": "2024-04-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Shedroff et al."}, "INSDC_accession": {"value": "PP058737.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP058737.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W1V9.1", "url": "https://pathoplexus.org/seq/PP_006W1V9.1"}, "country": {"value": "Argentina"}, "date": {"value": "1998-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6540}, "institution": {"value": "Centers for Disease Control and Prevention, Viral Special Pathogens Branch"}}, "branch_attrs": {"mutations": {"nuc": ["C191T", "A192G", "G243A", "A251G", "G343A", "C398T", "T458C", "T527C", "T557C", "A563G", "C605T", "G647A", "A677G", "T692G", "A751G", "A779G", "T848C", "G875A", "T1025C", "T1037C", "T1059C", "C1123A", "C1130T", "A1139G", "T1157C", "A1163G", "G1187A", "T1220C", "G1247A", "T1295C", "C1400T", "T1460C", "T1590C", "C1610T", "T1646C", "C1670T", "A1808G", "G1814A", "A1940T", "T2075C", "A2093G", "T2168C", "T2210C", "A2267G", "A2330G", "A2528G", "T2603C", "A2612G", "C2624T", "G2657A", "G2828A", "G2870A", "T2894A", "A2951G", "T2978C", "T3236C", "T3237C", "T3266C", "T3302C", "T3339C", "A3413G", "A3485G", "T3489C", "A3515T", "A3533G", "A3584C", "A3671G", "T3695C", "G3749A", "C4040T", "T4064A", "C4085T", "A4130G", "T4214C", "G4292A", "T4445C", "C4547T", "C4703G", "G4733A", "A4736T", "G4739A", "G4841A", "G4853A", "C4922A", "A5138G", "A5189G", "T5231C", "A5294C", "C5306T", "T5372C", "G5393A", "C5399T", "C5522T", "T5601C", "G5783A", "C5819T", "C5832T", "A5906G", "T5963C", "A6161G", "T6170C", "C6180T", "A6197G", "G6242A", "T6248C", "C6273T", "G6375A", "T6449C", "C6452T"], "RdRp": ["I53V", "V70I", "G103E", "K239R", "P363Q", "V2114I"]}, "labels": {"aa": "RdRp: I53V, V70I, G103E, K239R, P363Q, V2114I"}}}, {"name": "PP_006W27K|ER19-SP1693|Argentina/2019-XX-XX", "node_attrs": {"div": 0.196641, "strain": {"value": "PP_006W27K|ER19-SP1693|Argentina/2019-XX-XX"}, "accession": "PP_006W27K", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date_released": {"value": "2024-09-14"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "PP151172.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151172.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W27K.1", "url": "https://pathoplexus.org/seq/PP_006W27K.1"}, "country": {"value": "Argentina"}, "date": {"value": "2019-XX-XX"}, "outbreak": {"value": "unassigned"}, "division": {"value": "Entre Rios"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6563}, "host": {"value": "human"}, "institution": {"value": "Malbran Institute, Virology"}}, "branch_attrs": {"mutations": {"nuc": ["G6T", "T7A", "A62G", "C75T", "G119A", "T185C", "G266A", "A276T", "C308T", "A416G", "C518T", "T530C", "G581A", "G635A", "G644A", "G698A", "G752A", "C764T", "T800C", "C809T", "T824C", "C833T", "G878A", "G887A", "A893G", "C941T", "A1028G", "T1076C", "C1121T", "T1196C", "T1202C", "A1238G", "G1319A", "A1344G", "A1385G", "G1439T", "T1529C", "G1577A", "C1604A", "T1631C", "T1640C", "C1647T", "C1661T", "T1682C", "T1709C", "A1769G", "G1916A", "T1943C", "T1979C", "T1982C", "T2016C", "A2018C", "A2036G", "T2063C", "A2069G", "G2072A", "A2105G", "G2138A", "T2162C", "A2171G", "A2201G", "G2225A", "G2270A", "A2291G", "T2294C", "T2328C", "A2360T", "T2363C", "C2393T", "A2408G", "A2441G", "G2456A", "T2480C", "C2486T", "A2495G", "C2526T", "A2546G", "G2579A", "G2651A", "A2717G", "A2786G", "G2846A", "A2927G", "A2951C", "G2963A", "G3038A", "C3062T", "C3110T", "C3137T", "A3191G", "C3203T", "T3221C", "T3254C", "C3320T", "T3323C", "C3338T", "A3347T", "C3377T", "A3380G", "T3390C", "T3497G", "A3548G", "T3635G", "G3653A", "A3692G", "A3725T", "T3737C", "A3812G", "T3914C", "T3920C", "T3935C", "T3944C", "C3950T", "A4001G", "A4067G", "G4160A", "C4172T", "A4199G", "A4235G", "C4259T", "T4295C", "T4346C", "C4391T", "A4421G", "A4481G", "C4508T", "T4586C", "C4667T", "A4754G", "G4760A", "T4796C", "T5018C", "C5057T", "C5141T", "A5159G", "T5183C", "C5223T", "A5225G", "G5261A", "C5423T", "T5519C", "C5582T", "A5597G", "A5624G", "T5675C", "A5696G", "C5727T", "T5781C", "C5798T", "T5855C", "G6035A", "C6080T", "C6200T", "G6225A", "A6227G", "A6230G", "T6254C", "A6275G", "T6354C", "T6453C", "T6467C"], "RdRp": ["N81Y", "T437A", "A2064T"]}, "labels": {"aa": "RdRp: N81Y, T437A, A2064T"}}}]}, {"name": "NODE_0000005", "node_attrs": {"div": 0.17415, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G31A", "C75T", "A101G", "T113C", "T147C", "C221T", "A236T", "A260G", "A299T", "C305T", "T311C", "C374T", "A411T", "A422G", "T477C", "A479G", "A485G", "G509A", "C518T", "A530G", "A560T", "T591C", "A620G", "T626C", "T627C", "T653C", "T654C", "C686T", "T716C", "C761T", "T770A", "A802G", "C812T", "G815A", "A827G", "A828T", "G842A", "G854A", "C861A", "T869C", "T950C", "T990C", "T1022C", "G1073A", "A1085G", "T1097C", "C1109T", "T1112C", "A1178G", "C1190T", "G1239A", "T1256C", "A1268G", "G1274A", "T1349C", "C1370A", "T1394C", "A1412G", "A1415G", "T1418G", "A1421G", "G1439A", "T1469C", "C1475T", "T1511C", "A1520G", "T1523C", "A1601T", "G1616A", "C1661T", "T1688C", "T1820C", "A1850C", "C1859T", "A1883G", "C1949T", "A2024T", "C2100T", "A2144T", "G2159A", "T2174C", "C2177T", "C2237T", "C2243T", "A2258G", "T2264C", "G2270A", "T2273C", "A2303G", "C2308A", "T2315C", "T2348A", "A2357C", "A2381G", "G2387A", "T2432C", "T2439C", "A2459G", "C2474T", "A2483G", "C2526T", "T2573A", "T2633C", "A2648G", "T2663C", "C2693T", "G2699A", "T2711C", "A2741G", "T2747C", "A2759C", "A2765G", "T2774C", "T2819C", "G2861A", "A2897C", "T2903C", "A2933G", "T2945C", "T2954C", "T2957A", "C2987T", "T2993C", "C3035T", "A3068G", "T3098A", "T3125C", "C3257A", "G3269A", "A3275T", "G3341A", "C3344T", "A3392G", "T3398C", "T3419C", "T3443C", "A3449G", "T3470C", "T3488A", "T3503C", "A3536G", "T3552C", "T3572G", "T3615C", "T3623C", "G3626A", "T3638G", "T3651C", "T3656A", "A3665G", "T3668C", "T3684C", "T3690C", "A3698G", "A3704G", "A3731G", "T3753C", "T3818C", "C3831T", "T3836A", "A3839G", "C3845G", "C3864T", "T3881C", "G3884T", "T3917C", "A4037G", "T4046G", "T4061C", "G4139A", "C4211T", "T4238C", "T4250C", "G4323A", "T4325C", "A4328T", "C4343T", "A4361G", "A4373G", "G4385A", "C4403T", "A4463C", "A4500C", "C4508T", "G4517A", "T4535C", "G4643A", "A4649G", "A4670G", "G4682A", "T4694C", "C4703T", "G4751T", "C4778T", "G4811A", "A4844G", "A4865G", "A4892G", "G4931A", "T4943C", "G4997A", "T5039C", "T5054A", "T5063A", "A5078G", "C5141T", "G5198A", "T5234A", "A5249G", "T5270C", "T5303C", "A5315G", "T5321C", "T5331C", "G5333A", "C5358T", "T5363C", "T5369C", "T5372G", "A5406C", "T5459C", "T5462A", "A5489G", "G5495A", "A5501G", "A5504G", "A5549G", "T5552C", "G5627A", "T5642C", "A5700G", "A5780T", "C5786T", "T5864A", "A5870G", "T5966C", "T5972C", "C5997T", "A6017G", "T6041C", "T6050C", "T6101C", "A6173G", "G6182A", "T6188C", "T6191C", "A6269G", "T6281C", "T6284G", "A6305G", "A6344G", "A6348C", "T6380A", "A6443G", "T6491C"], "RdRp": ["M126L", "H245Q", "K256R", "Q276K", "V402I", "A758D", "I1889V", "K2105Q"]}, "labels": {"aa": "RdRp: M126L, H245Q, K256R, Q276K, V402I, A758D, I1889V, K2105Q"}}, "children": [{"name": "PP_006W1SF|BA18-LD1633|Argentina/2018-XX-XX", "node_attrs": {"div": 0.18422, "strain": {"value": "PP_006W1SF|BA18-LD1633|Argentina/2018-XX-XX"}, "accession": "PP_006W1SF", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date_released": {"value": "2024-09-14"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "PP003837.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP003837.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W1SF.1", "url": "https://pathoplexus.org/seq/PP_006W1SF.1"}, "country": {"value": "Argentina"}, "date": {"value": "2018-XX-XX"}, "outbreak": {"value": "unassigned"}, "division": {"value": "Buenos Aires"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6587}, "host": {"value": "human"}, "institution": {"value": "Malbran Institute, Virology"}}, "branch_attrs": {"mutations": {"nuc": ["A92T", "C128T", "A158G", "T227C", "C245T", "C290T", "A770G", "C809A", "A872G", "C915T", "A920G", "G1040A", "C1123A", "T1160C", "T1172C", "G1298A", "G1445A", "A1535G", "G1568T", "T1655C", "T1751C", "T1874C", "A1967G", "T1981C", "A1988G", "C2004T", "T2060C", "A2714G", "G2804A", "T2867G", "T3194C", "T3207C", "T3758C", "T3782C", "A3928G", "T4382C", "A4499G", "A4715T", "C4740A", "A4754G", "T4769C", "A4833G", "A4847C", "G4856A", "A5009G", "T5243C", "C5246T", "A5318G", "G5327A", "A5432G", "C5540T", "T5550G", "T5714C", "G5783A", "T5813C", "C6179T", "A6230G", "T6359C", "A6380G", "G6497A", "A6552T", "G6555T", "A6556T"], "RdRp": ["P363Q", "F649S", "K1298R", "I1600V", "S1839A"]}, "labels": {"aa": "RdRp: P363Q, F649S, K1298R, I1600V, S1839A"}}}, {"name": "PP_006W1RH|BA18-RR1620|Argentina/2018-XX-XX", "node_attrs": {"div": 0.185216, "strain": {"value": "PP_006W1RH|BA18-RR1620|Argentina/2018-XX-XX"}, "accession": "PP_006W1RH", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date_released": {"value": "2024-09-14"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "PP003836.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP003836.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W1RH.1", "url": "https://pathoplexus.org/seq/PP_006W1RH.1"}, "country": {"value": "Argentina"}, "date": {"value": "2018-XX-XX"}, "outbreak": {"value": "unassigned"}, "division": {"value": "Buenos Aires"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6558}, "host": {"value": "human"}, "institution": {"value": "Malbran Institute, Virology"}}, "branch_attrs": {"mutations": {"nuc": ["G71A", "A192G", "C332T", "G410A", "T572G", "T614C", "T719C", "G728A", "G788A", "G834A", "G1004A", "T1034A", "C1088T", "A1106G", "A1139G", "A1150G", "G1184A", "T1232C", "A1322G", "G1391A", "C1499T", "T1556C", "T1590C", "G1766A", "T1793C", "G1832A", "A1901G", "T1982C", "T2063C", "G2072A", "T2141C", "A2201G", "G2216A", "T2231C", "G2384A", "T2396C", "T2492C", "T2498C", "G2651A", "T3032C", "G3033A", "T3092C", "T3122C", "A3176G", "G3314A", "A3515T", "G3596A", "A3809G", "A3986T", "C4031T", "T4064C", "C4310T", "T4367C", "T4406C", "G4466A", "T4514C", "T4610C", "T4751C", "G4941A", "T5018C", "T5106C", "G5135A", "A5297G", "G5426A", "A5693G", "C5835T", "A5909G", "G5999A", "T6008C", "T6254C", "C6290T", "A6356G", "G6371A", "C6452T", "C6485T", "C6553A"], "RdRp": ["I53V", "V267I", "K372R", "D1000N", "V1636I"]}, "labels": {"aa": "RdRp: I53V, V267I, K372R, D1000N, V1636I"}}}]}]}, {"name": "NODE_0000006", "node_attrs": {"div": 0.095897, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A62G", "C114T", "A116G", "A194T", "T209C", "T227A", "T242C", "G263A", "C347T", "G386A", "G434A", "C487T", "A500T", "G635A", "C695A", "T839C", "A890G", "A1016G", "C1038T", "G1040A", "A1051T", "T1142A", "G1151A", "A1163T", "A1169G", "C1190A", "G1274A", "C1307T", "T1308C", "A1310T", "A1325T", "T1389C", "G1391T", "G1442A", "G1445A", "A1463T", "C1466T", "A1478G", "T1511G", "A1538T", "A1562T", "A1574C", "G1577A", "A1595G", "C1622T", "G1676A", "T1691G", "A1734C", "G1766A", "T1775A", "A1796G", "A1850G", "T1925A", "C1937G", "G1964A", "G2006A", "T2015C", "T2040C", "A2081T", "T2091C", "A2147T", "C2148T", "C2177T", "C2237A", "A2374T", "T2390A", "T2405A", "C2438T", "A2459T", "A2534T", "A2579T", "A2598C", "T2603C", "A2662G", "T2681A", "C2726A", "T2733C", "C2834A", "T2894A", "A2990G", "A2996G", "A3014T", "G3080A", "A3086G", "C3110T", "A3134G", "C3158T", "T3190C", "C3230T", "T3323C", "G3341A", "C3344T", "T3437A", "A3557T", "G3608A", "C3633T", "C3641T", "C3650T", "T3722C", "C3728A", "G3752A", "A3761G", "A3779T", "A3794C", "A3812G", "A3833T", "T3836G", "T3923A", "G3941A", "T4046C", "A4055G", "A4076G", "T4127A", "T4151A", "T4256C", "A4319G", "G4323A", "T4340C", "T4436C", "A4487G", "T4559A", "T4602C", "A4664T", "A4718T", "T4725C", "G4733A", "A4736T", "A4784T", "T4808A", "A4814T", "G4853A", "A4868T", "T4902C", "A4947C", "C4986T", "A5030T", "C5034A", "A5075T", "A5117G", "C5192T", "G5198A", "A5210G", "T5240C", "G5261A", "A5294T", "C5328A", "G5348A", "A5390G", "C5412T", "C5423T", "G5426A", "G5576A", "G5585T", "T5675C", "T5756A", "A5840T", "C5867T", "G5885A", "T5969A", "A6020G", "A6032G", "A6044G", "A6137T", "A6149G", "A6197T", "C6290T", "A6326T", "G6353A", "G6389A", "G6398A", "C6428T"], "RdRp": ["A151V", "Y339F", "E1541D", "I1745V"]}, "labels": {"aa": "RdRp: A151V, Y339F, E1541D, I1745V"}}, "children": [{"name": "PP_006W0VA|VARS/22-01|Brazil/2022-12-09", "node_attrs": {"div": 0.199135, "strain": {"value": "PP_006W0VA|VARS/22-01|Brazil/2022-12-09"}, "accession": "PP_006W0VA", "author": {"author": "Amgarten, D.; Dorlass, E.; dos Santos Soares, A. C.; Moreira Salles, A. P.; Takara, A.; da Silva Santos, A.; Oliveira Sartori, B. S.; Petroni, R. C.; Sallum Filho, C. F. C.; Hidal, J. T.; Camargo, L. F. A.; Doi, A.; Rebello Pinho, J. R.", "value": "Amgarten, D.; Dorlass, E.; dos Santos Soares, A. C.; Moreira Salles, A. P.; Takara, A.; da Silva Santos, A.; Oliveira Sartori, B. S.; Petroni, R. C.; Sallum Filho, C. F. C.; Hidal, J. T.; Camargo, L. F. A.; Doi, A.; Rebello Pinho, J. R."}, "date_released": {"value": "2023-01-18"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Amgarten et al."}, "INSDC_accession": {"value": "OQ092243.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OQ092243.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W0VA.1", "url": "https://pathoplexus.org/seq/PP_006W0VA.1"}, "country": {"value": "Brazil"}, "date": {"value": "2022-12-09"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6538}, "host": {"value": "human"}, "institution": {"value": "Hospital Israelita Albert Einstein, Varsomics"}}, "branch_attrs": {"mutations": {"nuc": ["G27T", "C47T", "G74A", "G77T", "A80T", "A110G", "G119T", "G125A", "C128T", "A158G", "A167G", "T179A", "A212G", "C221T", "C245T", "T254C", "C272A", "C281T", "T284C", "A294G", "A302G", "C308T", "A314G", "T320A", "T326C", "C348T", "C350A", "T359C", "T368C", "T371C", "C374T", "T380A", "A389T", "A392G", "G413A", "T431C", "G443A", "T457C", "A465C", "T476C", "T477C", "T488A", "T491C", "A506T", "A521G", "A524T", "A542C", "T545A", "T554C", "T578A", "T608A", "T611C", "G617T", "A618C", "T626C", "T627C", "G629A", "A634G", "A636G", "C637T", "A638T", "T653C", "T654C", "A656T", "T671C", "A674G", "A689T", "T692A", "C699T", "A701G", "A714G", "A728G", "G734A", "G744A", "G746T", "A751G", "T755A", "C764T", "A779G", "G788A", "G797A", "A814G", "C821T", "A827G", "A831G", "A832C", "T836G", "G842T", "G843A", "G853A", "G873A", "G875T", "A887G", "A893G", "G914A", "C915A", "A917T", "G920A", "C921T", "T941C", "T956A", "C986T", "G1004A", "T1007C", "A1028G", "T1046A", "T1049A", "G1055A", "G1061A", "T1082C", "A1102G", "A1103G", "G1115A", "C1121T", "C1122T", "G1130A", "G1133A", "T1157C", "A1160G", "G1166A", "A1175G", "G1184A", "A1188G", "G1208A", "G1217A", "A1223G", "A1226C", "G1247A", "A1283T", "C1317T", "T1328C", "T1331C", "T1343C", "G1367A", "A1376T", "T1379A", "T1391C", "T1400C", "C1413A", "A1415C", "A1421G", "T1433C", "A1436T", "T1437C", "G1439C", "C1475T", "T1481C", "C1493T", "A1502T", "G1506T", "A1535G", "G1556A", "A1565C", "C1566T", "G1568A", "A1592G", "T1598G", "T1607A", "G1616A", "C1619T", "T1628C", "A1634G", "T1647C", "A1675G", "C1678T", "A1695G", "T1709A", "G1712A", "G1715A", "T1733C", "T1745C", "T1746C", "A1748T", "A1769T", "A1778G", "T1781A", "A1808G", "T1820C", "A1841G", "C1859T", "T1863C", "C1865T", "T1866C", "T1869C", "A1880T", "T1895G", "A1901G", "C1914T", "C1923T", "C1949T", "T1952A", "T1958C", "C1962T", "T1965C", "A1973G", "C1979T", "C1994T", "T2000C", "C2004T", "A2036T", "C2037T", "T2048C", "T2060C", "G2066A", "A2069C", "T2075C", "A2093G", "T2094C", "A2096G", "G2135A", "A2144C", "A2156C", "G2159A", "A2171G", "T2184C", "T2189A", "A2198C", "C2214T", "G2225A", "T2228G", "T2246G", "T2264C", "A2267G", "A2291G", "A2299C", "A2300C", "T2318G", "T2324C", "T2328C", "T2348A", "A2351G", "C2359T", "G2375A", "G2384A", "C2393T", "A2405G", "G2411A", "A2423G", "C2429T", "A2441G", "A2447T", "T2459C", "G2462A", "T2468C", "T2471C", "A2495G", "A2513C", "C2516T", "C2525T", "T2534C", "A2544G", "A2546C", "T2565C", "T2579C", "T2588A", "A2606G", "A2612G", "A2618G", "A2621T", "A2636T", "T2663C", "A2669T", "C2693T", "A2717G", "A2744G", "A2750G", "A2822G", "G2831A", "A2852T", "G2882T", "A2888T", "A2897C", "A2900T", "T2909C", "C2915G", "A2927G", "T2934C", "A2972T", "A2984G", "C2987A", "T3002C", "A3008G", "T3011A", "G3023T", "C3024T", "A3026G", "C3035T", "G3038A", "T3039C", "A3044G", "C3062T", "T3098C", "A3099C", "A3104G", "T3105C", "T3125C", "G3152C", "A3176T", "T3179C", "A3200T", "C3203T", "A3209G", "A3212G", "G3215T", "T3219C", "T3237C", "T3241A", "T3251A", "T3258C", "A3260C", "T3261C", "G3269A", "A3272G", "A3275G", "T3285C", "T3293A", "T3311C", "T3326C", "T3329A", "T3338A", "T3357C", "A3359G", "A3368G", "T3390C", "A3392C", "A3413G", "A3440T", "T3443C", "T3470C", "T3476C", "A3485T", "T3489C", "T3500C", "A3515T", "A3530T", "T3557C", "T3566C", "T3590A", "A3599G", "A3602T", "T3606C", "T3651C", "A3671G", "T3681G", "T3689C", "T3695A", "A3704T", "A3713T", "A3728G", "T3729C", "A3731T", "G3746A", "A3764T", "T3782C", "G3803A", "A3809G", "C3845A", "G3863A", "T3866A", "C3869T", "A3875G", "T3881C", "G3884T", "A3938T", "A3939C", "T3956C", "G3957A", "T3966C", "A3968T", "T3977C", "G3980A", "A4001G", "G4007A", "T4017C", "A4019T", "G4025A", "T4028C", "G4043A", "T4067C", "A4082G", "T4085C", "T4109C", "A4115G", "C4125A", "G4126A", "T4133C", "T4136A", "G4139A", "T4154C", "A4166G", "C4169T", "A4181T", "A4193G", "T4242C", "A4268G", "T4277C", "C4290A", "A4313G", "T4325A", "A4328G", "T4349C", "C4354T", "A4370G", "C4376T", "T4388C", "T4412C", "A4433G", "G4454A", "T4457C", "A4475G", "A4481G", "T4490G", "G4502A", "T4514C", "G4523A", "T4535C", "A4544C", "A4562C", "C4565T", "A4574G", "G4583T", "A4592C", "G4625A", "C4629T", "T4631G", "A4637T", "T4640C", "A4661G", "A4673G", "G4679A", "T4688A", "T4691C", "T4697A", "T4700G", "G4742A", "G4760T", "T4784C", "A4787G", "T4796C", "T4802C", "T4814C", "G4823A", "A4829G", "A4842C", "A4850G", "A4856G", "C4859T", "A4874T", "A4884G", "A4919G", "A4978G", "A4982G", "A4994G", "T4995C", "T5018C", "T5039C", "C5043A", "A5048G", "T5081C", "T5087C", "C5091T", "G5129A", "A5144T", "A5150T", "T5204A", "A5225C", "A5249G", "T5258A", "A5259C", "T5270G", "A5285G", "T5291C", "T5294C", "A5303T", "T5312C", "A5324C", "T5331C", "G5333T", "A5351T", "C5358T", "T5381C", "C5411T", "G5433T", "T5438A", "G5444A", "G5453A", "T5462C", "A5465C", "T5468C", "A5474G", "A5501T", "T5502C", "T5507C", "A5510G", "A5540T", "T5546C", "A5552T", "T5558A", "T5561C", "T5564A", "A5573T", "T5585C", "C5604T", "A5609C", "T5615A", "A5624G", "T5633C", "A5660G", "C5663A", "A5677G", "A5678G", "A5681G", "A5684G", "A5696T", "A5717T", "T5718A", "T5720A", "G5723C", "C5724T", "T5726A", "A5744G", "T5747C", "A5750G", "C5759T", "C5765T", "T5774A", "T5777C", "G5783A", "C5786A", "G5831A", "C5835T", "A5846T", "T5858C", "T5864C", "T5879C", "A5894G", "C5903T", "T5915C", "T5921A", "A5942G", "T5960A", "T5975C", "A5999G", "T6011C", "A6023T", "T6038C", "T6047C", "T6053C", "T6065A", "C6074T", "T6084C", "A6107G", "A6115G", "T6125G", "T6128C", "A6131T", "A6134G", "G6143A", "T6170G", "T6173A", "A6176G", "G6182A", "T6185G", "T6197C", "T6251C", "G6256A", "A6266C", "C6276T", "A6293C", "T6311A", "T6320C", "A6329G", "C6347T", "T6361C", "T6380A", "G6382A", "A6401T", "A6404G", "T6410C", "G6425A", "T6431A", "A6458T", "C6485T", "C6487A", "A6488G", "T6498A", "G6499C", "T6505C", "A6506T", "A6513G", "A6519C", "T6529A", "A6530T", "T6531G", "A6554G", "A6556G", "C6557T", "T6558C", "A6559G", "T6560C", "T6561A"], "RdRp": ["I25M", "I87V", "M126I", "I141T", "K200R", "T201V", "I227V", "E237N", "K239R", "K260R", "N266A", "Q269H", "A270T", "G273E", "E280N", "L294I", "K356R", "P363S", "I385V", "L460I", "K547R", "A548V", "I554V", "F610L", "E755A", "T775I", "T837A", "K1039N", "F1069Y", "S1216A", "V1308I", "R1364K", "S1440V", "D1555E", "K1648R", "A1800S", "K1881R", "S1895T", "D1975E", "K2027R", "S2074N", "I2109T", "R2116K", "T2151K"]}, "labels": {"aa": "RdRp: I25M, I87V, M126I, I141T, K200R, T201V, I227V, E237N, K239R, K260R, N266A, Q269H, A270T, G273E, E280N, L294I, K356R, P363S, I385V, L460I, K547R, A548V, I554V, F610L, E755A, T775I, T837A, K1039N, F1069Y, S1216A, V1308I, R1364K, S1440V, D1555E, K1648R, A1800S, K1881R, S1895T, D1975E, K2027R, S2074N, I2109T, R2116K, T2151K"}}}, {"name": "NODE_0000007", "node_attrs": {"div": 0.199936, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G26A", "A44G", "A65G", "T83A", "A86G", "A98G", "A137G", "C146T", "G149A", "A164C", "T185C", "G188A", "T191C", "T203A", "T215C", "C230G", "A233C", "A260G", "C272T", "T284A", "G293A", "C305T", "A312C", "T320C", "A335G", "A344G", "A362T", "A399C", "A404G", "G407A", "T428C", "T452C", "G462A", "T473A", "A485G", "A492C", "A497T", "T500C", "G509A", "G512A", "T539A", "T554A", "A560T", "T569C", "T578C", "G581A", "T591C", "A593T", "C605T", "G644A", "T653A", "A662T", "C668T", "A677G", "A737G", "T740C", "G752A", "C758T", "C761T", "C776T", "T786C", "T800C", "A803G", "A827C", "G828A", "T830A", "T870A", "T881C", "G896A", "T899C", "A902T", "G914C", "A926T", "A929T", "G935A", "C938T", "C944T", "T950G", "C965T", "G995A", "A1070C", "G1073A", "A1079G", "A1083G", "A1085T", "T1088C", "T1091C", "T1100C", "T1112C", "A1124T", "A1145T", "A1148G", "T1167C", "T1172C", "A1178G", "T1181A", "T1191C", "A1193C", "T1202A", "T1205G", "T1220C", "A1226G", "A1238G", "C1250T", "T1259A", "A1292G", "T1295C", "G1298A", "G1304A", "T1310C", "A1313T", "T1316C", "A1319T", "T1331A", "C1339T", "T1349G", "A1355T", "T1356G", "C1358A", "C1370T", "T1386C", "G1397A", "T1418A", "T1428C", "A1451T", "C1454T", "C1470T", "T1472A", "C1484A", "A1487T", "T1523A", "A1580T", "A1589T", "A1601T", "C1610T", "A1613T", "T1631C", "A1643T", "T1664C", "T1673C", "T1703C", "T1709C", "A1730G", "T1740C", "G1742A", "A1748G", "C1772T", "T1799C", "A1817G", "C1827T", "A1842C", "C1847A", "A1883G", "T1907C", "C1913T", "G1919A", "A1928T", "T1943G", "T1944C", "G1946T", "T1955C", "G1976A", "A1988G", "G1997A", "A2003C", "A2018T", "A2024C", "A2027T", "A2030T", "G2033A", "A2045T", "C2049T", "T2051A", "A2054T", "A2084G", "G2087A", "A2088C", "A2090G", "A2093C", "T2099C", "C2100T", "A2105G", "T2114C", "T2117A", "G2138A", "A2150G", "T2168C", "A2178C", "G2186A", "A2216G", "A2222G", "C2241T", "C2243A", "A2261C", "T2273C", "T2276A", "A2285G", "A2286C", "A2288G", "T2294C", "A2309T", "A2311G", "A2330G", "G2333A", "G2355A", "A2360G", "A2366G", "A2378T", "G2387A", "C2388T", "T2412C", "A2414C", "A2415T", "G2426A", "C2480T", "C2492T", "T2498C", "T2504C", "A2510G", "C2522T", "T2543G", "T2561C", "T2573C", "T2582C", "A2597T", "G2600A", "T2604C", "A2610C", "C2624T", "A2627C", "G2651A", "A2672G", "T2675C", "T2684C", "A2714G", "T2720C", "A2738G", "A2747C", "G2753A", "A2765G", "T2768C", "T2792A", "C2795T", "A2801G", "A2804G", "T2813C", "A2822T", "A2843T", "C2853T", "A2858G", "G2870A", "C2896T", "C2915T", "C2918T", "T2945G", "G2975A", "A2999G", "A3026C", "C3032T", "A3041G", "T3056A", "A3065T", "A3074T", "G3101A", "A3107G", "C3111A", "T3119A", "T3137C", "T3149A", "T3155C", "A3161G", "T3182G", "T3191A", "A3197G", "T3207C", "A3209T", "A3221G", "T3224C", "T3251C", "A3254T", "T3257A", "T3290C", "A3296G", "T3297C", "T3320C", "T3353C", "A3377C", "A3380G", "T3383C", "A3398G", "T3401A", "A3416T", "A3446G", "T3461C", "C3471T", "T3482C", "T3488C", "T3497C", "T3500A", "A3512T", "A3524T", "A3536C", "A3581G", "T3603C", "G3605T", "A3614T", "T3615C", "A3617C", "T3623C", "T3638C", "A3662T", "A3677G", "T3690C", "C3701T", "G3707A", "A3737T", "G3749A", "G3755A", "T3758C", "T3779C", "A3785C", "T3798C", "C3821G", "A3824T", "A3830T", "C3848T", "A3857T", "A3875T", "T3878A", "T3893C", "G3908A", "T3917C", "C3920A", "T3944A", "A3951C", "T3960C", "A3962T", "T4013C", "A4019G", "A4037G", "G4058C", "T4064C", "A4070G", "A4094G", "T4097C", "C4101A", "A4112G", "A4127G", "A4130G", "G4139T", "T4142C", "T4148C", "A4181G", "G4190A", "A4191C", "G4196A", "T4197C", "T4205C", "T4217C", "A4241G", "C4251A", "C4257A", "T4259A", "A4271G", "A4283G", "T4289C", "G4292T", "A4304G", "C4310A", "A4313T", "C4326T", "A4334T", "A4350T", "C4354G", "A4364T", "T4367C", "T4382C", "G4385A", "T4391C", "A4394C", "C4395T", "G4400T", "A4415T", "G4418A", "C4452A", "G4460A", "A4463C", "A4469T", "A4472T", "A4481C", "T4490C", "A4493G", "A4499G", "A4505C", "G4529A", "A4538G", "T4550C", "A4553T", "A4574C", "T4580A", "A4604T", "T4607C", "G4611T", "C4619T", "C4628A", "G4646A", "T4664C", "C4674T", "T4676A", "G4679C", "T4685C", "T4694G", "C4703A", "C4712T", "T4718C", "T4730C", "G4751A", "A4754T", "G4760A", "T4793C", "T4826C", "A4832G", "T4835C", "G4838A", "T4860C", "G4862A", "A4865G", "T4868C", "G4877A", "T4880C", "T4895C", "T4916C", "G4965A", "C4967T", "A4970G", "A4979G", "A4988G", "G4997A", "A5012G", "C5016T", "T5018G", "A5033G", "G5051T", "T5057A", "C5066T", "T5084A", "A5090G", "G5093T", "A5096G", "C5106T", "T5123C", "C5141T", "T5153C", "C5156A", "C5159T", "A5162G", "T5171C", "T5183C", "C5223T", "C5234A", "T5246A", "T5252C", "T5258C", "G5267A", "T5270C", "T5273C", "T5279C", "A5284G", "A5297T", "A5300G", "T5306A", "T5309C", "A5316C", "A5360T", "A5378G", "A5393G", "C5396A", "A5402G", "A5429T", "A5456G", "A5465G", "T5471A", "A5489T", "T5490C", "A5504G", "A5513G", "G5516A", "A5519T", "G5531A", "C5534T", "T5546A", "T5550G", "A5583G", "T5591C", "T5594G", "A5595C", "T5600C", "T5601C", "T5615C", "T5621C", "C5639G", "T5651G", "T5669C", "A5693G", "T5726C", "C5759A", "T5768A", "C5786T", "T5798A", "A5801G", "A5804T", "A5810T", "T5813C", "C5832T", "A5837T", "T5840C", "T5843C", "A5882G", "T5891A", "T5897C", "T5909A", "A5927G", "T5936A", "A5939G", "T5949C", "A5951T", "A5990T", "A5996G", "C5997T", "C6027T", "T6029G", "G6035A", "T6059C", "T6080C", "G6083A", "A6092G", "T6095A", "A6140G", "G6152C", "T6153C", "T6156C", "A6158T", "T6191C", "C6200T", "G6212T", "T6218C", "T6233C", "T6248C", "T6254C", "T6258A", "C6291T", "A6296T", "G6299A", "A6302G", "G6317A", "C6335G", "A6344G", "A6348C", "A6350G", "A6356G", "A6360T", "T6362G", "G6365A", "G6375A", "C6395G", "T6410A", "T6416A", "T6422A", "A6435C", "A6443G", "C6452G", "T6453C", "C6456A", "G6461A", "T6464C", "A6470C", "T6476C", "T6479G", "G6482A"], "RdRp": ["A143T", "A265T", "L279M", "I350V", "I371M", "T435I", "S441A", "S491A", "K759R", "V774I", "I780M", "S794C", "T954I", "D1303E", "H1356N", "T1439S", "A1526S", "V1617I", "D1644N", "K1750R", "S1839A", "I1850V", "S2075T", "K2105Q", "I2109L", "V2114I"]}, "labels": {"aa": "RdRp: A143T, A265T, L279M, I350V, I371M, T435I, S441A, S491A, K759R, V774I, I780M, S794C, T954I, D1303E, H1356N, T1439S, A1526S, V1617I, D1644N, K1750R, S1839A, I1850V, S2075T, K2105Q, I2109L, V2114I"}}, "children": [{"name": "PP_006W26M|BA16_LJC1557|Argentina/2016-XX-XX", "node_attrs": {"div": 0.204515, "strain": {"value": "PP_006W26M|BA16_LJC1557|Argentina/2016-XX-XX"}, "accession": "PP_006W26M", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date_released": {"value": "2024-09-14"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "PP151171.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151171.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W26M.1", "url": "https://pathoplexus.org/seq/PP_006W26M.1"}, "country": {"value": "Argentina"}, "date": {"value": "2016-XX-XX"}, "outbreak": {"value": "unassigned"}, "division": {"value": "Buenos Aires"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6443}, "host": {"value": "human"}, "institution": {"value": "Malbran Institute, Virology"}}, "branch_attrs": {"mutations": {"nuc": ["T295C", "T431A", "T488C", "G629A", "C1100G", "G1106A", "A1175G", "G1334A", "C1432A", "G1439A", "A1520G", "T1538C", "A1614C", "C1773T", "G1877A", "C2004T", "G2678A", "T2934C", "T3074C", "T3317C", "A3359G", "A3704G", "G4353A", "T4610C", "G4739A", "T4886C", "T6251C", "A6278G"], "RdRp": ["I87T", "S466Y", "M614I"]}, "labels": {"aa": "RdRp: I87T, S466Y, M614I"}}}, {"name": "NODE_0000008", "node_attrs": {"div": 0.202963, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G416A", "G866A", "A1361G", "A1490G", "A1838G", "C1865T", "G1937A", "T2048C", "A3314G", "A3458G", "G3746A", "G4682A", "A4775G", "C5142A", "A5216G", "A5501G", "T6047C", "A6260G", "T6338C", "A6401G"], "RdRp": ["S1440G"]}, "labels": {"aa": "RdRp: S1440G"}}, "children": [{"name": "NODE_0000009", "node_attrs": {"div": 0.208462, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A851G", "G890A", "T1280C", "G1715A", "T1733C", "A2057G", "T2075C", "A2303G", "T2318C", "A2933G", "A2960G", "T3344C", "T3390C", "G3581A", "T3632C", "T3701C", "C3899T", "A3968G", "G4015A", "G4127A", "G4210C", "T4439C", "G4694A", "A4721G", "A4745G", "G4832A", "A4877G", "T4885C", "G4988A", "G5006A", "G5336A", "A5342G", "T5868C", "A6194G", "C6450T"], "RdRp": ["R1327K", "S1392T", "I1617T"]}, "labels": {"aa": "RdRp: R1327K, S1392T, I1617T"}}, "children": [{"name": "PP_006W0UC|Arg-h484|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.208463, "strain": {"value": "PP_006W0UC|Arg-h484|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0UC", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "date_released": {"value": "2023-10-10"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555736.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555736.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W0UC.1", "url": "https://pathoplexus.org/seq/PP_006W0UC.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6443}, "host": {"value": "human"}, "institution": {"value": "Malbran Institute, Virology"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W20Z|BA02_SMM484|Argentina/2002-XX-XX", "node_attrs": {"div": 0.208463, "strain": {"value": "PP_006W20Z|BA02_SMM484|Argentina/2002-XX-XX"}, "accession": "PP_006W20Z", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date_released": {"value": "2024-09-14"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "PP151165.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151165.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W20Z.1", "url": "https://pathoplexus.org/seq/PP_006W20Z.1"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "outbreak": {"value": "unassigned"}, "division": {"value": "Buenos Aires"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6443}, "host": {"value": "human"}, "institution": {"value": "Malbran Institute, Virology"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000010", "node_attrs": {"div": 0.205618, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G818A", "C839T", "G1385A", "T1746C", "A2051G", "G2311A", "T2486C", "G2510A", "A2544G", "A3275C", "C3353T", "C3536T", "T3552C", "T4313C", "A5111G", "A5144G", "G5882A"], "RdRp": ["R759K", "T837A"]}, "labels": {"aa": "RdRp: R759K, T837A"}}, "children": [{"name": "NODE_0000011", "node_attrs": {"div": 0.206861, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G6T", "T7A", "G98A", "C786T", "T1728C", "G2360A", "C3035T", "C5222T", "G5996A", "T6221C"]}}, "children": [{"name": "PP_006W24R|BA02_AOA490|Argentina/2002-XX-XX", "node_attrs": {"div": 0.207326, "strain": {"value": "PP_006W24R|BA02_AOA490|Argentina/2002-XX-XX"}, "accession": "PP_006W24R", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date_released": {"value": "2024-09-14"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "PP151169.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151169.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W24R.1", "url": "https://pathoplexus.org/seq/PP_006W24R.1"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "outbreak": {"value": "unassigned"}, "division": {"value": "Buenos Aires"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6473}, "host": {"value": "human"}, "institution": {"value": "Malbran Institute, Virology"}}, "branch_attrs": {"mutations": {"nuc": ["C11G", "T12A", "G2543A", "G3581A", "C6453T"]}}}, {"name": "NODE_0000012", "node_attrs": {"div": 0.206862, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W25P|BA02_ROM495|Argentina/2002-XX-XX", "node_attrs": {"div": 0.206863, "strain": {"value": "PP_006W25P|BA02_ROM495|Argentina/2002-XX-XX"}, "accession": "PP_006W25P", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date_released": {"value": "2024-09-14"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "PP151170.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151170.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W25P.1", "url": "https://pathoplexus.org/seq/PP_006W25P.1"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "outbreak": {"value": "unassigned"}, "division": {"value": "Buenos Aires"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6443}, "host": {"value": "human"}, "institution": {"value": "Malbran Institute, Virology"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W23T|BA02_RJF487|Argentina/2002-XX-XX", "node_attrs": {"div": 0.207018, "strain": {"value": "PP_006W23T|BA02_RJF487|Argentina/2002-XX-XX"}, "accession": "PP_006W23T", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date_released": {"value": "2024-09-14"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "PP151168.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151168.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W23T.1", "url": "https://pathoplexus.org/seq/PP_006W23T.1"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "outbreak": {"value": "unassigned"}, "division": {"value": "Buenos Aires"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6443}, "host": {"value": "human"}, "institution": {"value": "Malbran Institute, Virology"}}, "branch_attrs": {"mutations": {"nuc": ["C3108T"], "RdRp": ["H1025Y"]}, "labels": {"aa": "RdRp: H1025Y"}}}]}]}, {"name": "NODE_0000013", "node_attrs": {"div": 0.207177, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G365A", "A893G", "A992G", "T1640C", "T1688C", "C2213T", "C2684T", "C3488T", "A5198G", "G5456A"]}}, "children": [{"name": "PP_006W21X|BA02_VVN481|Argentina/2002-XX-XX", "node_attrs": {"div": 0.207333, "strain": {"value": "PP_006W21X|BA02_VVN481|Argentina/2002-XX-XX"}, "accession": "PP_006W21X", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date_released": {"value": "2024-09-14"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "PP151166.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151166.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W21X.1", "url": "https://pathoplexus.org/seq/PP_006W21X.1"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "outbreak": {"value": "unassigned"}, "division": {"value": "Buenos Aires"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6482}, "host": {"value": "human"}, "institution": {"value": "Malbran Institute, Virology"}}, "branch_attrs": {"mutations": {"nuc": ["C6453T"]}}}, {"name": "NODE_0000014", "node_attrs": {"div": 0.207179, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2AD|BA02_VVD480|Argentina/2002-XX-XX", "node_attrs": {"div": 0.207694, "strain": {"value": "PP_006W2AD|BA02_VVD480|Argentina/2002-XX-XX"}, "accession": "PP_006W2AD", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date_released": {"value": "2024-09-23"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "PP504849.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP504849.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W2AD.1", "url": "https://pathoplexus.org/seq/PP_006W2AD.1"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "outbreak": {"value": "unassigned"}, "division": {"value": "Buenos Aires"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 2}, "length": {"value": 3892}, "host": {"value": "human"}, "institution": {"value": "Malbran Institute, Virology"}}, "branch_attrs": {"mutations": {"nuc": ["G3677A", "A6305G"]}}}, {"name": "PP_006W22V|BA02_VO483|Argentina/2002-XX-XX", "node_attrs": {"div": 0.207645, "strain": {"value": "PP_006W22V|BA02_VO483|Argentina/2002-XX-XX"}, "accession": "PP_006W22V", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date_released": {"value": "2024-09-14"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "PP151167.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151167.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W22V.1", "url": "https://pathoplexus.org/seq/PP_006W22V.1"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "outbreak": {"value": "unassigned"}, "division": {"value": "Buenos Aires"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6443}, "host": {"value": "human"}, "institution": {"value": "Malbran Institute, Virology"}}, "branch_attrs": {"mutations": {"nuc": ["A251C", "G950A", "C6450T"], "RdRp": ["Q72H"]}, "labels": {"aa": "RdRp: Q72H"}}}]}]}]}]}]}]}]}]}, {"name": "NODE_0000015", "node_attrs": {"div": 0.0184296, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C91T", "T147C", "G188A", "C200G", "C245T", "C297T", "C308T", "T320A", "T323A", "A338T", "A362T", "T368G", "T446C", "T566C", "G704A", "T716C", "G746A", "A803G", "G854T", "G896A", "C900A", "T950A", "A1028G", "T1037A", "T1046A", "C1080T", "A1148G", "C1158T", "G1166A", "G1184A", "G1193T", "G1239A", "G1296A", "G1298T", "G1397A", "C1454A", "T1512C", "C1529T", "T1628A", "A1844G", "C1847A", "C1865T", "T1869C", "A2157C", "G2159T", "A2198T", "C2214T", "A2252G", "A2286C", "A2360C", "A2531G", "G2591A", "A2661T", "A2741T", "A2921G", "A2927G", "T3029A", "T3185A", "T3320A", "T3338A", "A3536T", "C3563T", "T3656A", "T3734C", "G3746T", "A3764T", "C3848A", "C3920A", "G4016A", "A4229T", "G4265A", "A4322G", "G4364T", "A4373G", "A4415T", "A4574T", "C4628T", "A4634T", "G4643A", "T4688A", "C4778G", "C4901A", "T4943C", "T4961A", "C5066T", "T5087C", "T5105A", "A5111T", "T5204A", "T5264A", "G5282A", "A5316C", "T5600C", "C5604T", "T5714A", "T5774A", "A5816G", "A5930G", "C5987T", "T6065A", "T6128G", "C6203T", "T6273C", "C6291T", "A6332T", "A6342C", "C6395A", "C6419T", "A6464G"], "RdRp": ["S18T", "H245Q", "T837A", "Q838L", "H875Q", "I1010L", "K1939R"]}, "labels": {"aa": "RdRp: S18T, H245Q, T837A, Q838L, H875Q, I1010L, K1939R"}}, "children": [{"name": "PP_006W1W7|807266_L|Paraguay|1997|Paraguay/1997-XX-XX", "node_attrs": {"div": 0.208463, "strain": {"value": "PP_006W1W7|807266_L|Paraguay|1997|Paraguay/1997-XX-XX"}, "accession": "PP_006W1W7", "author": {"author": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J.", "value": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J."}, "date_released": {"value": "2024-04-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Shedroff et al."}, "INSDC_accession": {"value": "PP058738.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP058738.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W1W7.1", "url": "https://pathoplexus.org/seq/PP_006W1W7.1"}, "country": {"value": "Paraguay"}, "date": {"value": "1997-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6537}, "host": {"value": "small vesper mouse"}, "institution": {"value": "Centers for Disease Control and Prevention, Viral Special Pathogens Branch"}}, "branch_attrs": {"mutations": {"nuc": ["G27A", "T29C", "A30T", "G31A", "A34C", "C47T", "A50G", "G53A", "T56A", "T68A", "G70A", "G71A", "T76A", "A86T", "T89A", "A92G", "A110T", "A116C", "A123C", "G125T", "T131C", "A138C", "A140G", "G149T", "T152A", "A164T", "A167G", "G192A", "T193G", "A194T", "A206T", "T209G", "T210G", "A212G", "T215A", "C219T", "G221A", "T227A", "C230T", "A233T", "A243G", "A248T", "A251G", "C281T", "A314G", "A346C", "G350A", "G356A", "T359C", "C374T", "G386T", "T387G", "A392T", "T398C", "A408C", "A410C", "A425T", "T428G", "C429T", "T431G", "T437C", "G438A", "G443A", "A449G", "C450T", "T452A", "A455T", "A456G", "A461G", "G466A", "A468C", "A469G", "A470T", "T473C", "G486A", "T488A", "A492C", "C503T", "T504A", "C505T", "G509T", "A515T", "A530G", "A533T", "T539A", "T545A", "A548G", "C558A", "T578G", "G581A", "C588A", "C590A", "T602A", "G617A", "T626C", "T627C", "G629T", "A634G", "G635A", "T636C", "T637A", "A638G", "A645C", "G647T", "A650T", "A662T", "T672C", "A677G", "T680C", "A686T", "A689T", "C692A", "C695A", "A701C", "A702C", "A706T", "A712G", "T725C", "A726C", "A728C", "G734A", "C738T", "G752T", "A753C", "T755G", "C758A", "C761T", "A765T", "T770G", "T773C", "C776T", "A780C", "T782A", "G788A", "A791T", "A809G", "C812T", "G828T", "T830A", "A837G", "T838C", "A845C", "G852C", "G853A", "T854C", "C855T", "G863A", "T865A", "T870A", "A874C", "G875A", "G878T", "A882T", "A883C", "A887G", "A893T", "A902G", "C912T", "T915A", "G917T", "G920A", "G935T", "C937T", "C942T", "A944G", "A953C", "C956A", "C965T", "G968A", "T977C", "A978C", "G980A", "A981C", "T989C", "A998T", "A1006T", "T1025C", "A1029G", "T1030C", "G1031A", "T1034A", "G1040A", "T1043C", "T1052C", "T1067A", "A1070T", "T1076A", "T1094C", "G1106T", "C1109T", "C1121T", "C1123A", "G1130T", "G1133A", "T1142C", "A1145T", "A1146T", "G1151A", "T1152A", "A1175C", "T1176A", "T1177G", "T1185G", "C1191A", "A1205G", "G1208A", "A1214G", "A1216C", "G1217T", "A1229C", "T1240C", "C1241A", "T1247C", "C1250T", "C1253T", "G1260T", "T1265C", "A1271C", "A1275C", "T1277A", "T1280C", "G1281A", "C1282A", "A1283T", "G1287T", "A1292G", "T1294C", "G1301A", "C1302A", "C1307A", "T1308C", "A1310G", "A1313T", "C1317T", "A1337G", "A1340C", "A1341C", "C1345T", "G1348C", "T1349A", "G1352C", "T1356A", "C1358A", "A1370C", "A1376G", "C1385A", "T1386C", "G1388C", "G1391A", "A1393G", "T1394C", "C1413A", "T1418G", "A1420G", "T1424C", "T1431A", "C1432G", "G1442A", "A1451T", "A1461C", "C1466T", "C1475A", "A1502T", "G1506T", "T1511G", "G1514C", "T1517A", "A1535T", "A1544G", "G1556T", "G1568T", "T1575C", "G1577A", "A1580G", "A1583C", "A1589T", "A1601G", "T1604A", "T1607A", "A1613T", "A1643T", "G1649A", "A1650T", "A1652G", "C1657A", "T1664C", "A1665C", "T1673A", "G1676A", "C1679T", "A1682G", "T1685A", "T1691G", "A1695G", "T1709G", "T1728C", "A1734C", "T1737C", "T1740C", "G1742A", "A1754T", "A1757G", "C1772G", "A1784C", "A1814G", "T1823C", "C1826T", "C1827T", "A1850T", "T1853C", "A1868G", "G1877A", "G1886A", "A1895C", "T1910C", "C1913T", "G1919A", "A1928T", "A1940T", "T1943A", "T1965C", "C1979T", "A1988T", "A1991C", "G1997A", "T2000C", "C2004T", "A2012G", "A2030T", "T2034A", "T2036A", "C2037T", "T2048C", "T2051A", "T2091C", "A2093T", "A2096G", "A2105T", "T2108A", "T2111C", "T2117A", "T2123A", "A2126T", "C2156T", "T2162A", "A2171G", "G2179A", "A2180G", "T2183C", "A2195G", "A2201C", "C2204T", "T2210C", "C2213T", "A2222G", "G2225A", "T2229C", "G2231C", "C2237T", "A2239C", "T2240A", "C2243T", "T2264C", "A2274G", "T2276A", "C2295A", "G2297T", "A2303G", "A2307G", "C2308T", "T2315C", "C2325T", "T2327A", "T2328A", "A2330G", "A2336G", "C2339T", "C2344A", "A2345T", "T2348A", "A2358G", "T2363A", "A2366T", "A2369T", "G2373A", "A2374T", "A2378G", "C2388T", "T2390G", "T2396C", "A2399G", "G2402A", "T2406G", "C2407T", "A2408G", "G2411A", "A2423G", "G2426A", "C2429G", "A2450G", "T2460C", "A2462T", "T2468A", "A2472G", "C2474T", "A2493C", "A2494G", "A2495C", "A2498G", "T2501C", "T2507C", "C2514A", "C2516G", "C2526T", "A2534T", "T2543C", "A2546C", "C2547T", "G2549A", "A2555G", "A2561G", "T2564C", "T2570A", "T2573A", "T2603C", "A2606G", "T2609C", "A2615T", "A2627T", "T2639G", "G2648A", "G2651A", "A2660G", "A2669C", "T2675A", "A2676C", "G2678T", "T2684A", "G2687A", "C2693T", "A2705G", "A2708T", "T2720C", "T2733C", "A2735T", "A2747T", "A2750G", "G2756A", "A2765G", "T2773A", "A2780T", "T2807C", "T2813A", "A2822T", "A2828G", "G2831A", "C2834A", "A2837G", "T2840C", "A2843C", "A2847C", "A2852T", "A2864T", "C2865T", "T2867A", "A2868C", "A2882C", "A2883T", "T2884C", "A2891G", "T2894A", "T2909G", "C2915A", "C2928A", "A2936G", "T2981C", "T3002C", "A3005T", "A3026C", "A3033C", "T3047C", "T3053C", "A3063C", "C3111A", "A3113G", "T3116C", "T3119A", "A3123G", "T3125G", "C3135T", "A3136G", "A3140T", "G3141A", "A3146T", "T3149A", "G3152T", "C3158T", "T3159C", "A3161T", "G3162T", "T3182G", "T3190C", "T3191A", "T3194C", "A3200G", "G3215A", "T3245G", "G3246T", "A3275G", "C3282T", "A3283G", "G3284C", "T3290C", "A3296G", "T3323C", "T3326C", "C3344T", "T3350C", "A3355T", "A3368G", "A3377C", "A3380T", "T3389C", "A3398G", "T3401C", "A3404T", "G3407A", "A3419G", "A3438G", "A3440T", "A3473C", "G3479A", "A3485T", "A3488G", "T3489C", "A3491C", "T3497C", "T3503A", "A3524C", "A3530G", "A3548G", "T3551C", "T3572C", "T3578A", "A3581T", "A3587T", "T3590A", "G3594A", "A3614T", "A3620T", "T3623C", "G3626A", "T3638C", "C3641T", "T3651C", "A3653T", "A3665G", "T3674C", "T3681G", "T3684C", "A3686G", "C3701T", "A3704T", "T3708C", "C3712G", "A3719G", "A3725T", "C3728T", "A3737G", "A3743G", "G3749A", "T3753C", "T3767A", "T3770C", "A3779C", "T3788C", "T3800G", "T3805C", "A3806T", "A3812G", "G3819A", "G3825A", "A3827C", "A3830T", "C3831T", "C3845T", "C3864T", "T3866G", "T3878C", "T3879A", "T3881A", "T3902C", "T3903C", "A3905G", "A3914T", "T3916A", "T3923A", "A3925T", "T3932C", "T3935A", "C3936A", "G3937A", "A3944T", "A3951C", "G3952A", "T3965A", "T3977C", "G3980A", "A3986G", "T3987C", "G3991A", "T3998C", "T4017C", "A4019G", "T4022C", "A4037C", "T4046C", "A4049G", "T4064A", "G4071T", "T4096A", "A4100C", "T4103G", "A4104T", "G4105C", "T4109C", "A4117C", "A4124T", "C4125A", "G4126A", "T4127A", "G4139T", "T4151A", "A4160G", "A4161G", "A4162G", "T4163C", "T4172C", "T4173C", "A4175T", "A4181T", "C4185T", "T4187A", "G4196A", "T4208A", "C4211T", "T4214A", "A4215G", "A4241C", "T4242C", "C4248T", "T4250A", "C4251A", "C4257A", "T4259G", "A4268C", "A4286T", "G4292A", "A4294T", "C4310G", "C4326T", "T4328G", "A4334C", "T4337C", "T4349A", "C4351G", "A4352T", "C4358T", "G4372A", "A4377C", "G4385A", "G4397A", "A4400T", "T4403C", "A4409T", "A4442G", "A4451C", "G4454C", "A4463G", "T4464G", "A4466T", "A4469T", "A4470G", "A4481T", "A4485C", "G4502A", "T4511A", "T4514C", "A4515C", "A4520G", "G4523A", "G4529A", "T4541C", "A4544T", "A4547C", "A4549C", "G4554A", "G4556T", "T4559A", "G4568A", "A4575G", "T4576C", "G4577A", "G4583A", "A4604G", "G4611T", "C4616T", "G4625C", "A4637T", "G4646A", "T4649C", "T4658A", "A4661T", "A4664G", "A4670G", "A4673G", "G4682A", "A4689G", "T4691C", "T4694A", "T4697G", "A4700G", "C4703A", "C4710A", "C4712A", "A4721G", "A4724G", "T4725C", "G4760T", "A4766T", "G4775A", "A4781T", "C4806T", "T4808G", "G4811A", "C4813G", "A4814C", "G4823A", "T4835A", "G4837A", "A4842C", "A4844G", "G4850A", "G4862A", "A4869G", "G4871T", "G4882A", "A4884C", "T4885A", "T4886A", "A4894G", "A4898C", "T4913C", "A4914T", "T4916G", "A4919T", "C4926A", "A4928G", "A4937T", "T4955C", "G4958A", "C4967T", "T4976G", "A4982G", "C4986T", "C4990A", "A4991T", "T4995C", "G4997C", "A5009G", "G5018A", "A5030T", "G5036A", "A5051T", "T5054G", "T5057A", "T5060G", "A5061G", "T5063A", "T5069A", "T5084G", "A5090T", "C5091T", "T5093G", "T5094C", "A5096T", "T5099C", "G5103A", "T5104C", "T5124C", "A5126G", "A5135G", "A5138T", "C5141T", "C5142A", "C5156T", "C5159A", "C5209A", "C5223T", "C5226A", "T5228A", "T5246G", "T5252C", "G5261A", "G5268A", "G5277T", "A5278C", "T5279A", "A5283C", "A5284G", "A5285G", "G5297T", "C5309A", "A5315G", "A5318C", "A5324T", "T5325C", "C5328A", "G5330A", "G5333A", "C5334A", "A5345G", "G5348T", "A5351G", "C5352A", "A5354G", "T5363A", "T5372G", "A5387T", "A5393G", "C5396T", "C5411T", "T5418C", "A5420G", "C5423T", "G5433T", "T5438A", "T5441C", "T5456G", "T5468C", "A5474T", "T5488C", "A5495T", "C5505A", "T5507G", "A5511C", "A5512G", "A5519T", "G5531A", "A5540C", "G5544A", "A5549G", "A5550G", "C5562A", "T5564A", "T5582C", "G5585A", "T5591C", "A5609T", "T5621C", "A5634G", "T5636C", "A5639G", "A5660T", "A5678G", "A5681T", "A5684T", "G5687A", "C5694T", "T5702A", "A5708T", "T5711A", "A5712G", "A5717G", "G5723A", "C5724T", "T5726G", "T5727C", "A5729T", "A5732G", "C5735T", "C5759A", "C5765A", "T5814C", "G5831A", "C5832T", "A5834G", "A5837G", "C5841T", "T5843A", "A5850C", "A5852T", "A5853G", "C5861A", "C5862T", "T5864A", "C5867T", "T5879A", "T5891A", "T5897C", "T5900C", "A5912T", "C5924T", "A5939G", "A5951G", "A5967G", "T5969G", "A5981T", "A5993T", "A5999T", "A6017G", "A6020G", "A6032G", "A6041T", "G6056A", "C6074A", "A6102G", "T6104A", "G6116A", "T6122A", "G6133A", "A6146T", "C6149A", "A6155C", "T6156A", "T6170G", "T6173A", "A6176G", "A6197G", "C6200T", "T6206A", "A6215T", "A6216G", "T6218G", "A6221G", "A6239T", "A6255G", "C6257G", "C6259T", "A6261G", "C6262T", "A6263T", "A6272C", "A6275T", "C6276T", "C6290T", "A6302G", "T6311G", "A6314G", "G6317A", "A6326T", "A6329G", "T6341C", "A6344T", "C6347T", "A6349T", "A6350T", "T6361G", "T6362A", "G6365A", "C6373T", "A6374T", "G6375T", "T6377A", "T6380A", "A6381C", "A6383T", "G6386A", "G6389A", "T6392C", "G6393A", "A6401T", "A6404G", "G6408A", "C6411T", "T6413G", "T6422C", "T6431A", "T6443A", "T6449A", "T6450C", "A6452T", "G6455T", "C6456A", "G6461A", "A6470T", "C6477T", "G6480A", "T6481C", "A6485C", "C6487T", "T6494C", "G6499T", "G6500A", "A6502G", "T6505C", "A6506C", "A6508T", "T6512G", "T6514A", "C6520T", "G6522A", "T6531C", "T6534A", "G6536T", "C6547-", "C6548-", "G6549-"], "RdRp": ["R12K", "L14Q", "I53S", "Q59E", "I70V", "N104T", "S118A", "K125H", "E130D", "V135I", "E140D", "I141V", "R144K", "K145R", "S157M", "K200R", "L201Q", "Y224F", "N226S", "K239N", "I240L", "D241E", "I244L", "N249Q", "A265S", "I268A", "G273H", "H274Y", "L279M", "Q280S", "K281N", "N283S", "L294I", "A301V", "I316L", "N324I", "M332A", "D347E", "P363Q", "L373I", "L381S", "S384A", "L386I", "K394T", "I402T", "A409S", "I414L", "A416N", "A418S", "Q423K", "N436H", "G438T", "M439I", "S441T", "N453S", "L460I", "K462R", "I476L", "I539L", "S541Q", "I544L", "I554V", "M614I", "S667T", "R715K", "N735T", "Q754N", "K758V", "L765M", "T770N", "M775A", "N776K", "E778D", "S791V", "I813V", "K820R", "D868E", "S876F", "F913Y", "N938H", "I950S", "N1000H", "S1030G", "H1034C", "D1036N", "T1039N", "A1043S", "N1047K", "A1052T", "A1071S", "Q1083C", "Y1107F", "Q1123H", "I1135V", "V1187I", "S1216A", "A1226G", "V1257A", "V1262I", "F1282I", "F1294Y", "Y1297F", "R1301K", "R1306Q", "S1319N", "A1346S", "F1354Y", "H1356Q", "G1360S", "E1361A", "R1364K", "N1376G", "I1394V", "Y1420L", "T1439S", "S1440N", "R1446K", "M1448L", "L1477V", "T1479A", "N1505T", "V1507I", "M1514A", "A1526S", "E1530D", "S1552G", "A1593S", "R1601K", "M1612V", "S1616N", "V1617Q", "N1620S", "I1627L", "T1652N", "I1676V", "I1683M", "V1690T", "L1725Q", "D1748S", "K1750R", "L1767M", "Q1773K", "I1776V", "A1800S", "V1818A", "K1826R", "V1837I", "S1839A", "I1867V", "E1883D", "I1893V", "N1940D", "I1978V", "E1982D", "R2033K", "L2041I", "I2058V", "I2061V", "S2074G", "S2075L", "T2076V", "K2105I", "I2109R", "T2113I", "V2114L", "V2120I", "V2125I", "P2148S", "V2149T", "T2151I"]}, "labels": {"aa": "RdRp: R12K, L14Q, I53S, Q59E, I70V, N104T, S118A, K125H, E130D, V135I, E140D, I141V, R144K, K145R, S157M, K200R, L201Q, Y224F, N226S, K239N, I240L, D241E, I244L, N249Q, A265S, I268A, G273H, H274Y, L279M, Q280S, K281N, N283S, L294I, A301V, I316L, N324I, M332A, D347E, P363Q, L373I, L381S, S384A, L386I, K394T, I402T, A409S, I414L, A416N, A418S, Q423K, N436H, G438T, M439I, S441T, N453S, L460I, K462R, I476L, I539L, S541Q, I544L, I554V, M614I, S667T, R715K, N735T, Q754N, K758V, L765M, T770N, M775A, N776K, E778D, S791V, I813V, K820R, D868E, S876F, F913Y, N938H, I950S, N1000H, S1030G, H1034C, D1036N, T1039N, A1043S, N1047K, A1052T, A1071S, Q1083C, Y1107F, Q1123H, I1135V, V1187I, S1216A, A1226G, V1257A, V1262I, F1282I, F1294Y, Y1297F, R1301K, R1306Q, S1319N, A1346S, F1354Y, H1356Q, G1360S, E1361A, R1364K, N1376G, I1394V, Y1420L, T1439S, S1440N, R1446K, M1448L, L1477V, T1479A, N1505T, V1507I, M1514A, A1526S, E1530D, S1552G, A1593S, R1601K, M1612V, S1616N, V1617Q, N1620S, I1627L, T1652N, I1676V, I1683M, V1690T, L1725Q, D1748S, K1750R, L1767M, Q1773K, I1776V, A1800S, V1818A, K1826R, V1837I, S1839A, I1867V, E1883D, I1893V, N1940D, I1978V, E1982D, R2033K, L2041I, I2058V, I2061V, S2074G, S2075L, T2076V, K2105I, I2109R, T2113I, V2114L, V2120I, V2125I, P2148S, V2149T, T2151I"}}}, {"name": "NODE_0000016", "node_attrs": {"div": 0.116594, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G26A", "A44G", "A62G", "G77T", "T89G", "T107C", "A158G", "C182T", "T210C", "C236T", "A254C", "A260G", "C272A", "A285T", "A287T", "T290A", "G293A", "A294G", "T296A", "A299G", "T311C", "A312C", "T331A", "C332T", "C374A", "A395T", "A404G", "G413A", "A424G", "T428C", "A432C", "G434A", "A444C", "G445A", "G462T", "A470G", "A482G", "G486C", "G493A", "G506A", "C518T", "T536C", "T539C", "A560G", "A563G", "T572G", "C590T", "T591C", "G617C", "G629A", "T632A", "G647A", "A656G", "C695T", "A701G", "T707C", "T713C", "A737G", "T749A", "A750C", "A751G", "G764A", "T770A", "A779G", "G792A", "G797A", "C823G", "C824T", "T836G", "A851G", "G852A", "G864T", "G866A", "G872A", "T873C", "G878A", "T881C", "T884C", "T899A", "G914C", "A923T", "A929G", "T971C", "G972A", "A983T", "C986G", "T990C", "G995A", "G1004A", "T1007C", "T1013A", "T1025A", "C1038T", "T1059C", "A1079G", "A1085T", "T1097C", "A1102G", "A1124T", "T1142G", "A1146C", "T1157A", "T1176C", "T1178C", "T1196C", "C1227T", "A1238G", "T1244A", "C1253A", "A1257G", "T1259G", "T1277C", "T1289A", "T1295A", "A1319T", "T1328C", "C1339T", "C1355T", "A1376T", "T1379A", "A1415T", "T1433C", "A1436T", "T1437C", "G1445A", "T1472A", "G1496A", "A1518C", "A1520T", "T1550C", "A1565T", "C1566T", "C1571T", "A1574T", "T1598A", "C1610T", "C1619T", "C1646A", "C1656G", "C1670T", "T1696C", "A1697C", "T1715C", "T1733C", "A1736G", "T1751C", "A1757C", "A1763G", "T1770C", "C1772T", "A1778C", "T1793C", "T1811C", "A1817C", "A1829T", "G1832A", "G1848A", "A1850C", "A1871C", "A1875G", "A1916T", "A1917C", "G1919T", "T1925G", "T1934A", "C1937A", "T1955G", "C1962T", "T1970A", "G1976A", "C1986A", "C1994T", "T2015C", "A2018T", "A2024T", "A2027T", "G2039A", "A2045T", "T2051G", "T2078C", "A2083G", "A2088C", "A2093G", "T2099A", "C2100T", "T2114C", "A2120G", "T2123C", "G2135T", "A2144C", "A2147T", "C2148T", "G2186A", "T2189C", "A2192T", "C2237G", "C2241T", "C2243A", "G2249A", "A2255T", "T2265C", "A2267T", "G2270A", "T2273C", "A2285T", "A2291G", "A2300G", "C2308A", "A2310C", "T2328C", "C2359T", "C2393T", "T2412C", "T2432C", "C2438T", "A2459T", "C2480T", "T2486C", "C2525T", "A2528C", "A2579G", "T2582A", "T2583C", "A2597T", "C2624T", "A2636T", "A2654T", "T2662C", "T2663A", "A2696G", "A2744G", "A2747G", "A2748C", "T2762A", "T2774C", "A2783T", "C2795G", "A2810T", "A2822G", "A2832G", "C2834T", "T2835C", "A2843T", "G2861A", "G2870A", "A2883G", "A2906T", "G2913A", "T2914G", "A2930G", "T2957C", "G2975A", "A2984T", "A2996G", "T3011A", "G3023C", "C3024T", "A3041G", "A3063T", "A3066C", "A3068C", "A3074T", "A3083T", "T3131A", "A3134T", "A3150G", "G3152A", "A3161G", "G3176T", "T3179A", "T3182C", "T3188C", "T3190A", "T3194A", "A3197G", "T3207C", "A3209T", "A3252G", "A3254C", "T3257A", "T3261C", "G3263T", "A3272G", "A3275C", "G3281A", "G3284A", "T3293A", "A3302G", "T3329A", "T3353C", "A3362G", "A3392G", "T3401A", "A3404G", "A3413G", "T3422C", "A3424T", "C3428T", "A3449G", "A3458G", "C3467T", "C3483T", "A3515T", "A3521G", "A3539T", "T3552C", "G3554T", "A3557T", "A3560T", "A3581G", "A3587C", "C3593T", "A3602C", "G3605A", "T3606C", "T3624C", "G3626T", "T3632G", "C3633T", "C3650T", "T3668C", "A3698T", "G3707A", "T3717C", "C3728A", "T3740C", "A3761T", "G3773A", "T3782C", "T3788A", "T3797C", "T3798C", "A3806G", "A3809T", "T3813G", "A3833T", "A3857T", "C3869A", "G3908A", "T3917C", "A3929G", "A3938T", "G3941A", "A3962G", "T4004C", "T4013C", "A4014C", "C4031T", "G4043A", "A4073T", "G4105A", "C4114T", "C4118G", "C4169T", "A4175G", "T4184C", "G4190A", "A4199G", "T4214C", "A4253T", "G4274A", "T4289C", "C4293T", "T4316C", "A4319G", "T4325A", "A4331T", "G4366C", "T4383C", "G4385C", "G4397T", "G4418A", "A4421G", "A4427T", "T4436C", "C4452A", "A4463C", "A4487G", "A4499T", "A4532T", "T4535A", "A4553G", "C4565T", "A4575C", "G4577T", "T4580A", "A4590G", "A4592C", "T4602C", "A4604T", "T4622A", "T4631A", "T4640C", "A4664T", "T4667C", "C4674T", "T4676A", "T4680C", "G4682T", "G4739A", "G4751T", "T4772A", "A4784T", "A4787G", "T4793C", "T4821C", "T4835C", "G4838A", "C4847T", "A4856G", "A4868T", "A4874T", "G4877A", "C4883T", "A4884G", "A4898T", "A4904G", "A4907G", "A4925T", "T4934C", "G4940A", "C4967A", "A4970G", "A4994T", "C5034A", "G5042A", "C5043A", "A5045G", "T5093C", "C5106T", "A5150C", "C5156A", "C5159T", "A5162G", "T5177C", "C5192T", "T5195C", "G5207A", "C5209T", "A5225C", "A5231T", "C5234T", "T5258A", "G5267A", "A5288G", "A5294C", "C5295T", "G5297A", "A5300G", "A5312C", "G5357A", "C5358T", "G5361A", "T5372A", "T5381C", "A5405T", "A5406C", "A5408G", "C5412T", "G5426A", "G5444A", "T5462G", "G5480A", "A5492G", "C5493A", "T5502C", "A5504T", "T5546A", "C5551G", "A5552T", "C5558T", "T5561C", "G5585T", "A5588G", "T5594A", "A5595C", "A5597G", "A5603G", "C5637A", "T5651A", "C5663G", "T5690C", "T5720A", "T5747C", "C5765T", "A5780T", "T5781C", "G5783A", "A5795G", "A5804T", "A5810G", "C5819T", "A5852G", "T5864C", "A5870T", "G5885A", "A5906T", "T5909G", "A5927G", "A5942G", "A5957T", "A5981G", "A5990T", "C6027T", "T6029G", "T6053G", "T6068A", "C6074T", "A6092G", "T6095A", "T6101C", "A6107G", "T6125G", "C6150A", "G6151A", "T6180C", "G6182T", "T6191C", "G6207A", "T6218C", "T6227A", "T6233C", "T6254C", "C6257T", "A6266T", "A6269T", "T6284A", "A6293G", "G6299A", "T6300C", "A6302T", "G6353T", "G6382A", "T6413C", "T6422A", "G6425A", "A6452G", "T6467C", "A6470G", "T6476C", "G6496A", "A6497G", "A6502T", "T6509C", "A6533G", "G6555T", "T6560C"], "RdRp": ["I53V", "T84S", "I87V", "F99Y", "M126I", "E130G", "K133Q", "S137H", "A143S", "T151P", "R153K", "K239R", "E253K", "T263S", "G273S", "E277L", "D313N", "K356R", "I408V", "T420I", "T435I", "V437A", "G438S", "E450D", "S491A", "S541A", "I554T", "V605I", "M614V", "K683R", "V747I", "K759Q", "M775I", "I780D", "I933V", "I950V", "V960S", "D1032E", "E1033D", "T1039E", "A1052N", "I1073V", "Y1130F", "K1258N", "S1260A", "I1264V", "S1357N", "G1360L", "S1444T", "M1514L", "I1519V", "E1541D", "A1593T", "D1644E", "I1745V", "V2023I", "R2039K", "E2106D", "R2116K"]}, "labels": {"aa": "RdRp: I53V, T84S, I87V, F99Y, M126I, E130G, K133Q, S137H, A143S, T151P, R153K, K239R, E253K, T263S, G273S, E277L, D313N, K356R, I408V, T420I, T435I, V437A, G438S, E450D, S491A, S541A, I554T, V605I, M614V, K683R, V747I, K759Q, M775I, I780D, I933V, I950V, V960S, D1032E, E1033D, T1039E, A1052N, I1073V, Y1130F, K1258N, S1260A, I1264V, S1357N, G1360L, S1444T, M1514L, I1519V, E1541D, A1593T, D1644E, I1745V, V2023I, R2039K, E2106D, R2116K"}}, "children": [{"name": "NODE_0000017", "node_attrs": {"div": 0.135968, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C47T", "T131C", "T155C", "T173C", "G200A", "C344T", "T431C", "T452G", "T457C", "A542G", "A548G", "T554C", "T608A", "C668T", "A677G", "T680C", "G815A", "G1047T", "C1064T", "A1072G", "A1082G", "T1085C", "A1118G", "C1190T", "C1358T", "T1386C", "G1391A", "T1511G", "T1517C", "T1574C", "T1590C", "A1595G", "A1646G", "T1655C", "C1661T", "T1694C", "A1748G", "C1757T", "A1781G", "A1784T", "A1892G", "T1958C", "T2027C", "G2033A", "A2090T", "T2117C", "T2141C", "C2165T", "T2168C", "C2204T", "A2288G", "T2294C", "A2399G", "T2405C", "T2543G", "C2547T", "A2555G", "G2753A", "G2756A", "G2831A", "T2903C", "C2987T", "A2990G", "T3039C", "C3068T", "T3098C", "G3132A", "A3146G", "T3170C", "A3287G", "C3305T", "T3357C", "A3359G", "T3461C", "T3482C", "T3684C", "A3692G", "T3818C", "A3944T", "A3953G", "T3956C", "T4010C", "A4019G", "T4061C", "T4256C", "A4271G", "A4352G", "A4354G", "C4601T", "G4679A", "T4704C", "G4775A", "T4808C", "T4860C", "T4995C", "T5000C", "T5123G", "C5225T", "A5324G", "G5333A", "A5390G", "A5501G", "A5510G", "T5625C", "A5651G", "T5780C", "A5783C", "T5792C", "A5801G", "T5984C", "A5999G", "T6047C", "A6086G", "T6164C", "T6209C", "C6276T", "G6386A", "T6434C"], "RdRp": ["I141T", "A338S", "K346R", "D1033N"]}, "labels": {"aa": "RdRp: I141T, A338S, K346R, D1033N"}}, "children": [{"name": "PP_006W0E7|Chile-9717869|nan/XXXX-XX-XX", "node_attrs": {"div": 0.135969, "strain": {"value": "PP_006W0E7|Chile-9717869|nan/XXXX-XX-XX"}, "accession": "PP_006W0E7", "author": {"author": "Bohlman, M. C.; Borucki, M.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; St Jeor, S.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B.", "value": "Bohlman, M. C.; Borucki, M.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; St Jeor, S.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B."}, "date_released": {"value": "2000-10-10"}, "abbr_authors": {"value": "Bohlman et al."}, "INSDC_accession": {"value": "NC_003468.2", "url": "https://www.ncbi.nlm.nih.gov/nuccore/NC_003468.2"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W0E7.1", "url": "https://pathoplexus.org/seq/PP_006W0E7.1"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6562}, "institution": {"value": "National Center for Biotechnology Information, NIH"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000018", "node_attrs": {"div": 0.135969, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0D9|Chile-9717869|Chile/1997-XX-XX", "node_attrs": {"div": 0.136279, "strain": {"value": "PP_006W0D9|Chile-9717869|Chile/1997-XX-XX"}, "accession": "PP_006W0D9", "author": {"author": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D.", "value": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D."}, "date_released": {"value": "2021-02-27"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Warner et al."}, "INSDC_accession": {"value": "MT956621.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MT956621.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W0D9.1", "url": "https://pathoplexus.org/seq/PP_006W0D9.1"}, "country": {"value": "Chile"}, "date": {"value": "1997-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6563}, "host": {"value": "mice and others"}, "institution": {"value": "Public Health Agency of Canada, Special Pathogens"}}, "branch_attrs": {"mutations": {"nuc": ["G576A", "C5517A", "A6535G", "C6553A", "A6554C"], "RdRp": ["V181I", "P1828T"]}, "labels": {"aa": "RdRp: V181I, P1828T"}}}, {"name": "PP_006VNZG|Chile-9717869|nan/XXXX-XX-XX", "node_attrs": {"div": 0.13597, "strain": {"value": "PP_006VNZG|Chile-9717869|nan/XXXX-XX-XX"}, "accession": "PP_006VNZG", "author": {"author": "Bohlman, M. C.; Borucki, M. K.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; Rowe, J. E.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B.", "value": "Bohlman, M. C.; Borucki, M. K.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; Rowe, J. E.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B."}, "date_released": {"value": "2000-10-10"}, "abbr_authors": {"value": "Bohlman et al."}, "INSDC_accession": {"value": "AF291704.5", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF291704.5"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VNZG.1", "url": "https://pathoplexus.org/seq/PP_006VNZG.1"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6562}, "institution": {"value": "University of Nevada-Reno, Microbiology"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000019", "node_attrs": {"div": 0.131028, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C74T", "C146T", "G149A", "A218G", "A296G", "A302G", "T329C", "C347T", "G386A", "T476C", "T488C", "T653A", "G659A", "C699T", "T710C", "T869C", "A926G", "G1130A", "A1169G", "T1211C", "A1229G", "T1508C", "C1657T", "A1658G", "G1712A", "T1745C", "T1907C", "C1949T", "A1988G", "A2306G", "G2426A", "C2429T", "T2439C", "G2444A", "C2492T", "C2504T", "T2540C", "G2585A", "G2600A", "A2618G", "T2684C", "T2751C", "T2807C", "G2846A", "C2957A", "T3089C", "T3155C", "C3203T", "C3218T", "G3341A", "C3344T", "T3500C", "T3536C", "A3728G", "G3863A", "A4100G", "T4250C", "A4361G", "T4412C", "G4553T", "G4583A", "C4629T", "A4655G", "A4670G", "C4703T", "A4721G", "A4931G", "T4976C", "T5057G", "A5165G", "T5247C", "A5315G", "C5334T", "C5489T", "T5558G", "A5639G", "T5702C", "T5726C", "A6044G", "A6098G", "A6113G", "C6149T", "T6219C", "C6290T", "A6360G", "A6372G", "G6389A", "A6513G"], "RdRp": ["A541V", "D1303E", "I2109V", "T2113A"]}, "labels": {"aa": "RdRp: A541V, D1303E, I2109V, T2113A"}}, "children": [{"name": "PP_006W0AF|ARCH14/NRC1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.157262, "strain": {"value": "PP_006W0AF|ARCH14/NRC1|nan/XXXX-XX-XX"}, "accession": "PP_006W0AF", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "date_released": {"value": "2020-03-31"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850096.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850096.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W0AF.1", "url": "https://pathoplexus.org/seq/PP_006W0AF.1"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6531}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}}, "branch_attrs": {"mutations": {"nuc": ["G119A", "C137T", "C219T", "T338C", "A341G", "T353C", "C390A", "T398C", "A422G", "G482A", "C503T", "C566T", "G581A", "G635A", "G701A", "A704G", "G737A", "C750A", "T782C", "A794G", "A797G", "G853C", "A866G", "G875A", "G986A", "A1046T", "A1115G", "A1130T", "T1172C", "C1178T", "A1184G", "T1199C", "A1223G", "T1247C", "T1265C", "C1277T", "G1348A", "A1370T", "A1373G", "T1424C", "T1520C", "A1589G", "A1601G", "C1622T", "T1637C", "T1823C", "C1862T", "G1877T", "C1913T", "T1922C", "G1946A", "T1952C", "A1967G", "A2012G", "C2078T", "G2120A", "C2123T", "T2159C", "A2171G", "C2177T", "C2360T", "A2369G", "T2393C", "A2408G", "G2411A", "T2501C", "C2516T", "G2666A", "A2669G", "A2672G", "A2699G", "A2735G", "T2771C", "T2816C", "T2879C", "A2882G", "A2936G", "A2963G", "C3110T", "A3140G", "A3190G", "T3191C", "A3200G", "T3242C", "A3257G", "A3329G", "T3335C", "A3380T", "A3473G", "A3548G", "T3551C", "T3615C", "C3641T", "T3698C", "G3749A", "T3770C", "A3848G", "T3926C", "A4001G", "C4013T", "T4103A", "T4106C", "G4139A", "T4242C", "T4259C", "T4277C", "C4358T", "A4433G", "A4493G", "A4520G", "T4550C", "G4556A", "T4559C", "C4575T", "T4577A", "A4580C", "C4619T", "A4643G", "A4727G", "T4826C", "C4934T", "A4982G", "A4991T", "A5043C", "A5147G", "C5195T", "G5300A", "A5303G", "T5306C", "C5396A", "G5417A", "A5429T", "G5453A", "G5462A", "G5627A", "G5654A", "A5708G", "C5735T", "T5738C", "C5759T", "T5828C", "T5835C", "A5846T", "A5888C", "T5906A", "G5930A", "G6053A", "G6056A", "G6092A", "A6137G", "A6140G", "A6161G", "C6254T", "T6291C", "A6335G", "G6365A", "A6425G", "C6428T", "T6473C"], "RdRp": ["S273T", "S438N", "N1052S", "H1356Q", "S1440N"]}, "labels": {"aa": "RdRp: S273T, S438N, N1052S, H1356Q, S1440N"}}}, {"name": "NODE_0000020", "node_attrs": {"div": 0.140268, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T297C", "T326C", "A686G", "C758T", "A860G", "T865C", "C884T", "A893G", "A899G", "A944G", "G1040A", "C1146T", "G1148A", "T1418G", "T1529C", "A1634G", "C1697T", "C1751T", "C1859T", "C1871A", "A1883G", "A2039G", "A2090C", "C2114T", "G2373A", "T2390C", "C2528T", "A2561G", "G2579A", "T2978C", "C3023T", "A3038G", "A3236G", "G3479A", "C3602A", "G3608A", "G3806A", "A4190G", "T4217C", "A4244G", "A4265G", "A4268G", "T4349C", "A4517G", "G4856A", "A4949G", "G5012A", "A5090G", "A5284G", "G5588A", "A5606G", "G5723A", "G5831A", "C5861T", "T5975C", "T5987C", "G6107A", "C6179T"], "RdRp": ["L277S", "D780N", "K1750R"]}, "labels": {"aa": "RdRp: L277S, D780N, K1750R"}}, "children": [{"name": "NODE_0000021", "node_attrs": {"div": 0.148869, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A374G", "A749G", "G935A", "A1082G", "A1226G", "A1239G", "T1566C", "G1616A", "C1622T", "G1649A", "T1709C", "G1766A", "C1817T", "A1973G", "C2177T", "A2258G", "A2345G", "A2423G", "A2483G", "A3065G", "G3215A", "G3302A", "C3305T", "A3488G", "A3569G", "T3629C", "C3668T", "T3881C", "G3896A", "T3903C", "T4010C", "A4354G", "C4508T", "T4577C", "G4625A", "A4661G", "T4860C", "T4910C", "G5028A", "A5072G", "A5105G", "T5123G", "A5126G", "T5246C", "T5252C", "T5270C", "C5309T", "C5423T", "A5615G", "T5969C", "T6206C", "T6281C", "T6434C"], "RdRp": ["I402V", "V1665I"]}, "labels": {"aa": "RdRp: I402V, V1665I"}}, "children": [{"name": "NODE_0000022", "node_attrs": {"div": 0.155114, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G560A", "C566T", "G803A", "G836A", "G851A", "C1466T", "T1657C", "G1658A", "C1745A", "T1949C", "G2252A", "A2447G", "G2531A", "T2654C", "A2672G", "C2726T", "G2930A", "T2981C", "T3039C", "A3221G", "T3266C", "G3509A", "G3752A", "A4181G", "C4463T", "A4766G", "C4821T", "C4835T", "A5009G", "T5231C", "G5597A", "T5636C", "G5639A", "C5735T", "G5852A", "T6251C", "T6449C", "G6455A"], "RdRp": ["V541A"]}, "labels": {"aa": "RdRp: V541A"}}, "children": [{"name": "NODE_0000023", "node_attrs": {"div": 0.158201, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G701A", "C738T", "A1010G", "C1508T", "A1649G", "T2468G", "C2774T", "A2975T", "T3218C", "G3269A", "A3635G", "T3960C", "A5387G", "C5411T", "A5588G", "C5747T", "G6116A", "C6347T", "C6428T"]}}, "children": [{"name": "PP_006VZ6S|NRC-5/18_06/01/2018|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.171857, "strain": {"value": "PP_006VZ6S|NRC-5/18_06/01/2018|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ6S", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258160.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258160.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZ6S.1", "url": "https://pathoplexus.org/seq/PP_006VZ6S.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6539}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {"nuc": ["C137T", "T215C", "C297T", "G374C", "A464G", "G467A", "A515C", "C591T", "G644A", "T680C", "G749A", "A802G", "G853A", "A866G", "G875A", "G893A", "G929A", "G944T", "A995G", "T1058C", "A1103G", "A1289G", "G1344A", "C1709T", "C1757T", "C1907T", "T2063C", "T2087C", "C2090T", "A2186G", "G2306A", "C2390T", "C2412T", "C2439T", "T2453C", "G2483A", "G2568T", "C2654T", "T2726C", "G2747A", "G2831A", "C3035T", "G3221A", "A3257G", "T3470C", "G3728A", "A3731G", "C3740T", "C3782T", "T3785C", "A3815G", "G3929A", "T4028C", "C4184T", "C4211T", "C4214T", "G4235A", "G4244A", "T4346C", "C4412T", "T4550C", "C4562T", "A4622G", "G4770A", "G4931A", "G4949A", "T5069C", "T5081C", "A5144G", "G5165A", "C5222T", "C5231T", "C5247T", "A5414G", "C5600T", "A5639G", "C5690T", "G5816A", "C5924T", "A5999G", "A6020G", "C6051T", "T6185C", "G6212A", "G6398A", "T6443C"], "RdRp": ["K256R", "S273N", "A437T", "A845S", "V1579I"]}, "labels": {"aa": "RdRp: K256R, S273N, A437T, A845S, V1579I"}}}, {"name": "NODE_0000024", "node_attrs": {"div": 0.169192, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C47T", "G266A", "A320G", "T348C", "G482A", "A740G", "A764G", "T839C", "T870C", "T915C", "T959C", "C971T", "T1067C", "G1133A", "A1163G", "T1247C", "T1319G", "G1388A", "T1571C", "A1580G", "C1679T", "C1979T", "A2003T", "T2114C", "C2123A", "A2357G", "A2414G", "C2474T", "C2486T", "T2504C", "T2528G", "T2661G", "T2720C", "T2723C", "A3008G", "T3023C", "G3236T", "T3290C", "A3368G", "G3458A", "C3486T", "A3617G", "C3641T", "A3719G", "G3803A", "T3854C", "T4088C", "C4349T", "A4370G", "G4502A", "G4517A", "T4694A", "C4722T", "G4742A", "T4808C", "C4910T", "T5054C", "G5090A", "C5093T", "A5360G", "G5558A", "T5798C", "G5810A", "T5903C", "C6219T", "T6291C", "A6305G", "A6314C", "A6320T", "C6467T"], "RdRp": ["S876A"]}, "labels": {"aa": "RdRp: S876A"}}, "children": [{"name": "PP_006VX9N|ANDV LS-CH-2016|Switzerland/2016-12-26", "node_attrs": {"div": 0.172219, "strain": {"value": "PP_006VX9N|ANDV LS-CH-2016|Switzerland/2016-12-26"}, "accession": "PP_006VX9N", "author": {"author": "Beuret, C. M.; Siegrist, D.", "value": "Beuret, C. M.; Siegrist, D."}, "date_released": {"value": "2018-01-29"}, "region": {"value": "Europe"}, "abbr_authors": {"value": "Beuret et al."}, "INSDC_accession": {"value": "KY659431.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/KY659431.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VX9N.1", "url": "https://pathoplexus.org/seq/PP_006VX9N.1"}, "country": {"value": "Switzerland"}, "date": {"value": "2016-12-26"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6470}, "host": {"value": "human"}, "institution": {"value": "Spiez Laboratory, Virology"}}, "branch_attrs": {"mutations": {"nuc": ["G1010A", "T1361A", "T1364C", "C1385T", "T1400C", "T1424C", "C1433T", "G1439A", "C1475T", "T1508C", "C3881T", "A3885T", "T4641C", "A4666G", "T4875C", "T4936A", "T5860C", "T6274A", "T6277A"], "RdRp": ["M1284L", "Y1544C", "I1634K", "I1942T", "L2080Q", "L2081Q"]}, "labels": {"aa": "RdRp: M1284L, Y1544C, I1634K, I1942T, L2080Q, L2081Q"}}}, {"name": "NODE_0000025", "node_attrs": {"div": 0.169419, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T1389C"]}}, "children": [{"name": "PP_006W0W8|ANDV-CH-LS-2022|Switzerland/2022-XX-XX", "node_attrs": {"div": 0.16942, "strain": {"value": "PP_006W0W8|ANDV-CH-LS-2022|Switzerland/2022-XX-XX"}, "accession": "PP_006W0W8", "author": {"author": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N.", "value": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N."}, "date_released": {"value": "2023-10-02"}, "region": {"value": "Europe"}, "abbr_authors": {"value": "Zuest et al."}, "INSDC_accession": {"value": "OR405522.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR405522.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W0W8.1", "url": "https://pathoplexus.org/seq/PP_006W0W8.1"}, "country": {"value": "Switzerland"}, "date": {"value": "2022-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6244}, "host": {"value": "human"}, "institution": {"value": "Spiez Laboratory, Biology Department"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0X6|ANDV-CH-LS-2016|Switzerland/2016-XX-XX", "node_attrs": {"div": 0.169588, "strain": {"value": "PP_006W0X6|ANDV-CH-LS-2016|Switzerland/2016-XX-XX"}, "accession": "PP_006W0X6", "author": {"author": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N.", "value": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N."}, "date_released": {"value": "2023-10-02"}, "region": {"value": "Europe"}, "abbr_authors": {"value": "Zuest et al."}, "INSDC_accession": {"value": "OR405523.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR405523.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W0X6.1", "url": "https://pathoplexus.org/seq/PP_006W0X6.1"}, "country": {"value": "Switzerland"}, "date": {"value": "2016-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 5924}, "host": {"value": "human"}, "institution": {"value": "Spiez Laboratory, Biology Department"}}, "branch_attrs": {"mutations": {"nuc": ["G3940A"], "RdRp": ["R1302K"]}, "labels": {"aa": "RdRp: R1302K"}}}]}]}]}, {"name": "NODE_0000026", "node_attrs": {"div": 0.156128, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C821T", "C1433T", "C1475T", "T4994C", "A5657G", "C5759T"]}}, "children": [{"name": "PP_006VZ3Y|NRC-2/97_06/01/1996|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169406, "strain": {"value": "PP_006VZ3Y|NRC-2/97_06/01/1996|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ3Y", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258157.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258157.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZ3Y.1", "url": "https://pathoplexus.org/seq/PP_006VZ3Y.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6542}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {"nuc": ["T122C", "A167G", "G218A", "C230T", "A293G", "C311T", "C329T", "T347C", "A638G", "T804C", "A809G", "G899A", "G926A", "A992G", "C1178T", "C1358T", "T1389C", "A1397G", "T1517C", "A1572G", "C1679T", "T1740C", "G1763A", "T1802C", "T1823C", "G2258A", "A2303G", "G2306A", "G2333A", "A2366T", "C2432T", "A2450G", "C2474T", "T2543C", "T2603C", "A2690G", "C3089T", "C3110T", "T3285C", "A3377G", "T3389C", "G3404T", "G3581A", "T3603C", "A3656T", "A3716G", "G3728A", "C3797T", "T3854C", "C3903T", "A3905G", "T3971C", "T4034C", "G4118A", "A4164C", "A4238G", "A4286G", "C4289T", "A4418G", "T4424C", "T4574C", "T4604A", "C4619T", "T4674C", "C4929T", "G5123T", "G5183A", "G5198A", "T5279C", "T5471C", "T5604C", "G5654A", "A5712G", "T5843C", "G5942A", "T6089A", "A6134G", "T6164C", "A6228C", "C6233T", "A6299G", "T6377C"], "RdRp": ["F257L", "I513V", "Q1123H", "I1893V"]}, "labels": {"aa": "RdRp: F257L, I513V, Q1123H, I1893V"}}}, {"name": "NODE_0000027", "node_attrs": {"div": 0.16659, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T216C", "A314G", "A389G", "G407A", "C446T", "G482A", "A506G", "T545C", "A560T", "A764G", "C776T", "G779A", "A803G", "A935G", "G1061A", "T1088C", "T1094C", "C1097T", "G1229A", "C1385T", "G1388A", "T1400C", "T1424C", "G1439A", "A1616G", "A1739G", "G1985A", "A2057G", "T2132C", "C2165T", "A2222G", "G2291A", "A2498G", "A2531G", "G2549T", "C2621T", "A2804G", "T3024C", "G3458A", "C3606T", "C3701T", "T3923C", "G3995A", "C4010T", "C4013T", "T4088C", "T4106C", "A4166G", "C4217T", "G4244A", "T4511A", "T4634C", "G4655A", "G4742A", "T4925C", "T5039C", "G5126A", "A5259C", "A5360G", "G5615A", "A5744G", "A5852G", "T5948C", "T5957C", "C5969T", "C5987T", "C6248T", "T6359C"]}}, "children": [{"name": "PP_006VQHC|CHI-7913|Chile/XXXX-XX-XX", "node_attrs": {"div": 0.170446, "strain": {"value": "PP_006VQHC|CHI-7913|Chile/XXXX-XX-XX"}, "accession": "PP_006VQHC", "author": {"author": "Tischler, N. D.; Fernandez, J.; Muller, I.; Martinez, R.; Galeno, H.; Villagra, E.; Mora, J.; Ramirez, E.; Rosemblatt, M.; Valenzuela, P. D.; Mueller, I.; Valenzuela, P. D. T.", "value": "Tischler, N. D.; Fernandez, J.; Muller, I.; Martinez, R.; Galeno, H.; Villagra, E.; Mora, J.; Ramirez, E.; Rosemblatt, M.; Valenzuela, P. D.; Mueller, I.; Valenzuela, P. D. T."}, "date_released": {"value": "2003-05-01"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Tischler et al."}, "INSDC_accession": {"value": "AY228239.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AY228239.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VQHC.1", "url": "https://pathoplexus.org/seq/PP_006VQHC.1"}, "country": {"value": "Chile"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 1}, "length": {"value": 6466}, "host": {"value": "human"}, "institution": {"value": "Fundacion Ciencia para la Vida, Departamento de Desarrollo e Investigacion"}}, "branch_attrs": {"mutations": {"nuc": ["C47T", "A474C", "G657A", "T846C", "T991C", "A1838C", "T2100C", "A2534G", "T2543C", "A2697G", "T3274C", "A3401T", "A3448G", "T3470C", "T3681C", "T4067C", "A4745G", "A5573G", "G5631A", "A5734T", "A5865G", "G6044A", "C6051T", "A6358G", "T6427C"], "RdRp": ["N147H", "E208K", "F271L", "L319P", "R888G", "V1080A", "E1138G", "S1216P", "D1866N", "N1900I", "N1944D", "D2108G", "F2131S"]}, "labels": {"aa": "RdRp: N147H, E208K, F271L, L319P, R888G, V1080A, E1138G, S1216P, D1866N, N1900I, N1944D, D2108G, F2131S"}}}, {"name": "NODE_0000028", "node_attrs": {"div": 0.166777, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A4988G"]}}, "children": [{"name": "PP_006W2HY|CHI-7913|Chile/1999-XX-XX", "node_attrs": {"div": 0.166778, "strain": {"value": "PP_006W2HY|CHI-7913|Chile/1999-XX-XX"}, "accession": "PP_006W2HY", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "date_released": {"value": "2025-11-04"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Barrera et al."}, "INSDC_accession": {"value": "PV808472.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808472.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W2HY.1", "url": "https://pathoplexus.org/seq/PP_006W2HY.1"}, "country": {"value": "Chile"}, "date": {"value": "1999-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6561}, "host": {"value": "human"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0CB|CHI-7913|Chile/1999-XX-XX", "node_attrs": {"div": 0.166778, "strain": {"value": "PP_006W0CB|CHI-7913|Chile/1999-XX-XX"}, "accession": "PP_006W0CB", "author": {"author": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D.", "value": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D."}, "date_released": {"value": "2021-02-27"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Warner et al."}, "INSDC_accession": {"value": "MT956620.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MT956620.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W0CB.1", "url": "https://pathoplexus.org/seq/PP_006W0CB.1"}, "country": {"value": "Chile"}, "date": {"value": "1999-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6466}, "host": {"value": "human"}, "institution": {"value": "Public Health Agency of Canada, Special Pathogens"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000029", "node_attrs": {"div": 0.156614, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C147T", "T182C", "T215C", "A233C", "T359C", "T458C", "A618C", "C1328T", "A1379G", "T1382C", "G1736A", "A1781G", "C1793T", "A1841G", "T1910C", "G2120T", "C2165T", "C2360T", "A2408G", "G2753A", "C2774T", "G2858A", "C3032T", "T3191C", "C3422T", "A3530T", "C3536T", "A3665G", "T3965C", "C4385T", "G4487A", "T4634C", "A4700G", "G4721A", "A4889G", "C4929T", "C4976T", "A5189G", "A5204C", "G5327A", "A5345G", "C5406A", "G5627A", "C5702T", "T5711C", "T5804C", "G6029A", "G6113A", "T6290C", "C6347T", "G6398A"], "RdRp": ["R144K"]}, "labels": {"aa": "RdRp: R144K"}}, "children": [{"name": "NODE_0000030", "node_attrs": {"div": 0.162418, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G200A", "T278C", "G404A", "T557C", "G1142A", "C1512T", "C1679T", "C2474T", "T2543C", "C2583T", "A2699G", "A2759C", "A2765G", "T2894C", "A3008G", "T3053C", "C3155T", "T3167C", "G3236A", "T3242C", "A3281G", "T3357C", "A3704G", "C3845T", "C4211T", "A4472G", "A4544G", "C4712T", "C4910T", "T4994C", "T5441C", "C5864T", "T5948C", "T6179C", "A6284G", "G6360A", "C6434T"], "RdRp": ["V2109I"]}, "labels": {"aa": "RdRp: V2109I"}}, "children": [{"name": "NODE_0000031", "node_attrs": {"div": 0.167495, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A243G", "T371C", "G466A", "G1061A", "T1094C", "A1118G", "A1205G", "A1526G", "A1562G", "C1661T", "T1829C", "A1967G", "T2192C", "A2201T", "A3221G", "T3371C", "A3779G", "T3866C", "A4220G", "G4322A", "T4391C", "C4463T", "A4844G", "A4991G", "C5225T", "G5615A", "A5693G", "T5891A", "T5900C", "G6098A", "C6101T", "C6476T", "G6533A"], "RdRp": ["I70V"]}, "labels": {"aa": "RdRp: I70V"}}, "children": [{"name": "PP_006VZ4W|NRC-3/18_06/01/1997|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.167496, "strain": {"value": "PP_006VZ4W|NRC-3/18_06/01/1997|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ4W", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258158.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258158.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZ4W.1", "url": "https://pathoplexus.org/seq/PP_006VZ4W.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6540}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZ5U|NRC-4/18_06/01/2018|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.167496, "strain": {"value": "PP_006VZ5U|NRC-4/18_06/01/2018|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ5U", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258159.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258159.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZ5U.1", "url": "https://pathoplexus.org/seq/PP_006VZ5U.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6545}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000032", "node_attrs": {"div": 0.170005, "outbreak": {"value": "2026-cruise-ship"}}, "branch_attrs": {"mutations": {"nuc": ["G62A", "T68G", "T332C", "A461G", "C488T", "A650G", "A704G", "A842G", "G968A", "C1211T", "A1223G", "A1283G", "C1382T", "T1740C", "C1745T", "C1923T", "G1961A", "G2411A", "A2414G", "A2441G", "G2483A", "A2627T", "G2927A", "T3125C", "T3170C", "T3263C", "T3437G", "G3521A", "T3560C", "G3581A", "A3716G", "T3833C", "A3848G", "T4427C", "G4556A", "T4751C", "G4787A", "G4889A", "C5195T", "C5270T", "A5669T", "G5687A", "T5777C", "T5835C", "T6173C", "G6212A", "C6219T", "T6302C", "C6428T"], "RdRp": ["K144R"]}, "labels": {"aa": "RdRp: K144R", "outbreak": "2026-cruise-ship"}}, "children": [{"name": "PP_006W3U9|PP_006W3U9|Netherlands/2026-05-06", "node_attrs": {"div": 0.170006, "strain": {"value": "PP_006W3U9|PP_006W3U9|Netherlands/2026-05-06"}, "accession": "PP_006W3U9", "author": {"author": "Oude Munnink, B. B.; Nieuwenhuijsse, D.; van der Boom, S.; Zaeck, L.; Boter, M.; Cassidy, H.; Schuele, L.; Molenkamp, R.; van der Eijk, A.; GeurtsvanKessel, C.; Koopmans, M.", "value": "Oude Munnink, B. B.; Nieuwenhuijsse, D.; van der Boom, S.; Zaeck, L.; Boter, M.; Cassidy, H.; Schuele, L.; Molenkamp, R.; van der Eijk, A.; GeurtsvanKessel, C.; Koopmans, M."}, "date_released": {"value": "2026-05-10"}, "region": {"value": "Europe"}, "abbr_authors": {"value": "Oude Munnink et al."}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "PPX_accession": {"value": "PP_006W3U9.1", "url": "https://pathoplexus.org/seq/PP_006W3U9.1"}, "country": {"value": "Netherlands"}, "date": {"value": "2026-05-06"}, "outbreak": {"value": "2026-cruise-ship"}, "restrictedUntil": {"value": "2027-05-10"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6456}, "host": {"value": "human"}, "institution": {"value": "ErasmusMC"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000033", "node_attrs": {"div": 0.170006, "outbreak": {"value": "2026-cruise-ship"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W6RC|PP_006W6RC|Netherlands/2026-05-03", "node_attrs": {"div": 0.170007, "strain": {"value": "PP_006W6RC|PP_006W6RC|Netherlands/2026-05-03"}, "accession": "PP_006W6RC", "author": {"author": "Diagne, Moussa Moise; Sankhe, Safietou; Ndiaye, Ndeye Awa; Kane, Mouhamed; Diop, Seynabou M. B. S.; Seye, Seynabou; Fall, Gamou", "value": "Diagne, Moussa Moise; Sankhe, Safietou; Ndiaye, Ndeye Awa; Kane, Mouhamed; Diop, Seynabou M. B. S.; Seye, Seynabou; Fall, Gamou"}, "date_released": {"value": "2026-05-11"}, "region": {"value": "Europe"}, "abbr_authors": {"value": "Diagne et al."}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "PPX_accession": {"value": "PP_006W6RC.1", "url": "https://pathoplexus.org/seq/PP_006W6RC.1"}, "country": {"value": "Netherlands"}, "date": {"value": "2026-05-03"}, "outbreak": {"value": "2026-cruise-ship"}, "restrictedUntil": {"value": "2027-05-11"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6456}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000034", "node_attrs": {"div": 0.170007, "outbreak": {"value": "2026-cruise-ship"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006WANE|PP_006WANE|South Africa/2026-05-02", "node_attrs": {"div": 0.170008, "strain": {"value": "PP_006WANE|PP_006WANE|South Africa/2026-05-02"}, "accession": "PP_006WANE", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "date_released": {"value": "2026-05-11"}, "region": {"value": "Africa"}, "abbr_authors": {"value": "Weyer et al."}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "PPX_accession": {"value": "PP_006WANE.1", "url": "https://pathoplexus.org/seq/PP_006WANE.1"}, "country": {"value": "South Africa"}, "date": {"value": "2026-05-02"}, "outbreak": {"value": "2026-cruise-ship"}, "restrictedUntil": {"value": "2027-05-11"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6463}, "host": {"value": "human"}, "institution": {"value": "National Institute of Communicable Diseases"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W5U7|PP_006W5U7|Switzerland/2026-05-04", "node_attrs": {"div": 0.170162, "strain": {"value": "PP_006W5U7|PP_006W5U7|Switzerland/2026-05-04"}, "accession": "PP_006W5U7", "author": {"author": "Bloemberg, Guido; Chudzinski, Valentin; Cordey, Samuel; Huber, Michael; Laubscher, Florian; P\u00e9rez-Rodr\u00edguez, Francisco-Javier; Pichler, Ian; Schibler, Manuel; Zingg, Walter; Thomasson, Valentine; Ziltener, Gabriela; Eckerle, Isabella", "value": "Bloemberg, Guido; Chudzinski, Valentin; Cordey, Samuel; Huber, Michael; Laubscher, Florian; P\u00e9rez-Rodr\u00edguez, Francisco-Javier; Pichler, Ian; Schibler, Manuel; Zingg, Walter; Thomasson, Valentine; Ziltener, Gabriela; Eckerle, Isabella"}, "date_released": {"value": "2026-05-10"}, "region": {"value": "Europe"}, "abbr_authors": {"value": "Bloemberg et al."}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "PPX_accession": {"value": "PP_006W5U7.3", "url": "https://pathoplexus.org/seq/PP_006W5U7.3"}, "country": {"value": "Switzerland"}, "date": {"value": "2026-05-04"}, "outbreak": {"value": "2026-cruise-ship"}, "restrictedUntil": {"value": "2027-05-10"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6561}, "host": {"value": "human"}, "institution": {"value": "University of Zurich, Zurich, Switzerland; University Hospitals of Zurich, Zurich Switzerland; University Hospitals of Geneva, Geneva, Switzerland"}}, "branch_attrs": {"mutations": {"nuc": ["G581A"]}}}]}]}]}]}, {"name": "NODE_0000035", "node_attrs": {"div": 0.16527, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C137T", "C428T", "A434G", "T452C", "G466A", "C539T", "G920A", "T1067C", "C1307T", "T1436C", "T1706C", "A1991T", "T2183C", "T2210C", "A2246G", "T2276C", "C2328T", "T2363C", "T2405G", "C2547T", "G2651A", "A2690G", "A2780G", "T2783C", "C2918T", "C3188T", "A3398G", "T3560C", "C3629T", "A3692G", "T3722A", "C3881T", "G3884A", "T4103C", "T4346C", "T4508C", "C4667T", "C4722T", "T5111C", "G5126A", "A5156G", "T5159C", "A5201G", "T5213C", "T5228C", "T5237C", "G5261A", "C5294T", "C5534T", "C5735T", "C5997T", "G6143A", "A6299G", "A6374T", "T6450C", "A6482C"]}}, "children": [{"name": "NODE_0000036", "node_attrs": {"div": 0.170841, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C446T", "C458T", "C488T", "A674G", "C713T", "A1148G", "G1274A", "A1310G", "C1661T", "A1739G", "G1776T", "C1910T", "G1964A", "A2243G", "A2336G", "C2390T", "G2402A", "A2579G", "A2612G", "T2720C", "C2987T", "G3236A", "G3272A", "T3638C", "T4385A", "G4778A", "G5018A", "G5057A", "G5072A", "C5111G", "A5144G", "C5247T", "A5519G", "A6134G", "C6200T", "T6257C"], "RdRp": ["A581S"]}, "labels": {"aa": "RdRp: A581S"}}, "children": [{"name": "PP_006W2JW|CHI-Hu13724_P1|Chile/2024-07-24", "node_attrs": {"div": 0.170842, "strain": {"value": "PP_006W2JW|CHI-Hu13724_P1|Chile/2024-07-24"}, "accession": "PP_006W2JW", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "date_released": {"value": "2025-11-04"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Barrera et al."}, "INSDC_accession": {"value": "PV808475.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808475.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W2JW.1", "url": "https://pathoplexus.org/seq/PP_006W2JW.1"}, "country": {"value": "Chile"}, "date": {"value": "2024-07-24"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6562}, "host": {"value": "human"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000037", "node_attrs": {"div": 0.170842, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2KU|CHI-Hu13724_P2|Chile/2024-07-30", "node_attrs": {"div": 0.170842, "strain": {"value": "PP_006W2KU|CHI-Hu13724_P2|Chile/2024-07-30"}, "accession": "PP_006W2KU", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "date_released": {"value": "2025-11-04"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Barrera et al."}, "INSDC_accession": {"value": "PV808478.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808478.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W2KU.1", "url": "https://pathoplexus.org/seq/PP_006W2KU.1"}, "country": {"value": "Chile"}, "date": {"value": "2024-07-30"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6555}, "host": {"value": "human"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000038", "node_attrs": {"div": 0.170842, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2G1|137|Chile/2024-06-27", "node_attrs": {"div": 0.170842, "strain": {"value": "PP_006W2G1|137|Chile/2024-06-27"}, "accession": "PP_006W2G1", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "date_released": {"value": "2025-11-04"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Barrera et al."}, "INSDC_accession": {"value": "PV808469.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808469.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W2G1.1", "url": "https://pathoplexus.org/seq/PP_006W2G1.1"}, "country": {"value": "Chile"}, "date": {"value": "2024-06-27"}, "outbreak": {"value": "unassigned"}, "division": {"value": "Los Rios CL"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6549}, "host": {"value": "human"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W2F3|136|Chile/2024-06-27", "node_attrs": {"div": 0.170842, "strain": {"value": "PP_006W2F3|136|Chile/2024-06-27"}, "accession": "PP_006W2F3", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "date_released": {"value": "2025-11-04"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Barrera et al."}, "INSDC_accession": {"value": "PV796318.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV796318.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W2F3.1", "url": "https://pathoplexus.org/seq/PP_006W2F3.1"}, "country": {"value": "Chile"}, "date": {"value": "2024-06-27"}, "outbreak": {"value": "unassigned"}, "division": {"value": "Los Rios CL"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6556}, "host": {"value": "human"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000039", "node_attrs": {"div": 0.168356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T155C", "T269C", "G470A", "A542G", "G563A", "G803A", "T989C", "A1187C", "C1358T", "C1470T", "C1733T", "G1946A", "A2072G", "T2429C", "A3722G", "G5045A", "C5195T", "T5231C", "A5285G"]}}, "children": [{"name": "PP_006W0QL|Andes/ARG_p3|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.168357, "strain": {"value": "PP_006W0QL|Andes/ARG_p3|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0QL", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "date_released": {"value": "2023-10-10"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555732.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555732.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W0QL.1", "url": "https://pathoplexus.org/seq/PP_006W0QL.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6544}, "institution": {"value": "Malbran Institute, Virology"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000040", "node_attrs": {"div": 0.168666, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C3560T", "A3920G"], "RdRp": ["I1295M"]}, "labels": {"aa": "RdRp: I1295M"}}, "children": [{"name": "PP_006W0SG|Andes/ARG_p19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.168821, "strain": {"value": "PP_006W0SG|Andes/ARG_p19|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0SG", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "date_released": {"value": "2023-10-10"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555734.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555734.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W0SG.1", "url": "https://pathoplexus.org/seq/PP_006W0SG.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6475}, "institution": {"value": "Malbran Institute, Virology"}}, "branch_attrs": {"mutations": {"nuc": ["C5058T"], "RdRp": ["P1675S"]}, "labels": {"aa": "RdRp: P1675S"}}}, {"name": "NODE_0000041", "node_attrs": {"div": 0.168667, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0RJ|Andes/ARG_p9|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.168668, "strain": {"value": "PP_006W0RJ|Andes/ARG_p9|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0RJ", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "date_released": {"value": "2023-10-10"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555733.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555733.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W0RJ.1", "url": "https://pathoplexus.org/seq/PP_006W0RJ.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6475}, "institution": {"value": "Malbran Institute, Virology"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0TE|Andes/ARG-M.a.|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.168668, "strain": {"value": "PP_006W0TE|Andes/ARG-M.a.|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0TE", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "date_released": {"value": "2023-10-10"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555735.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555735.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W0TE.1", "url": "https://pathoplexus.org/seq/PP_006W0TE.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6462}, "host": {"value": "Syrian golden hamster; Syrian golden hamsters; Syrian hamster; golden hamster"}, "institution": {"value": "Malbran Institute, Virology"}}, "branch_attrs": {"mutations": {"nuc": ["T28G"]}}}]}]}]}]}]}]}, {"name": "NODE_0000042", "node_attrs": {"div": 0.158967, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G53A", "T173C", "T182C", "T269C", "C329T", "T338C", "A341C", "A425T", "A455G", "A456G", "G509A", "T512G", "G560A", "T626C", "T654C", "G926A", "A1016G", "T1088C", "C1097T", "T1124C", "A1126G", "G1169A", "C1178A", "C1241T", "C1250T", "G1259A", "T1265C", "T1376C", "A1538G", "A1592G", "A1652T", "G1676A", "C1679T", "T1724C", "T1737C", "G1742A", "A1748G", "T1898C", "C1907T", "G1961A", "T1965C", "T2174C", "T2184C", "T2241C", "T2255C", "T2468C", "T2501C", "T2525C", "T2543C", "C2547T", "C2621T", "G2651A", "T2661G", "C2726T", "A2882G", "T2993C", "G3041A", "C3071T", "G3101A", "A3164G", "A3194G", "T3357C", "G3413A", "T3497C", "A3530G", "T3563C", "C3587T", "T3590C", "T3611C", "A3653G", "A3665G", "A3686G", "A3707G", "A3779G", "A3848G", "G3884A", "A3959C", "G4118A", "A4166G", "T4550C", "C4562T", "C4592T", "A4622G", "T4634C", "G4679A", "T4685C", "A4700G", "C4712T", "G4760T", "G4823A", "C4835T", "T4880C", "A4889G", "G4904A", "A4979G", "G4997A", "T5000C", "A5078G", "A5186G", "A5189G", "T5237C", "T5306G", "G5315A", "A5360G", "A5393G", "G5462A", "T5525C", "A5645G", "A5657G", "T5699C", "T5711C", "C5726T", "G5930C", "T5969A", "G6035A", "T6050C", "T6110C", "T6122G", "G6125A", "C6219T", "C6276T", "G6317A", "A6335G", "G6372A", "C6467T"], "RdRp": ["I141V", "N364S", "S876A", "S1440N", "Q1965H", "A2113T"]}, "labels": {"aa": "RdRp: I141V, N364S, S876A, S1440N, Q1965H, A2113T"}}, "children": [{"name": "NODE_0000043", "node_attrs": {"div": 0.164216, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C305T", "A365G", "A469G", "G635A", "G644A", "T857C", "A1482G", "G1514A", "T1727C", "A1841G", "T2024C", "T2036A", "T2633C", "G2666A", "A2888G", "T3125C", "T3170C", "G3194T", "C3275T", "G3632A", "A3704G", "T3935C", "G4100T", "G4139A", "G4625A", "C4640T", "C4722T", "A5048G", "C5177T", "A5258C", "T5369C", "G5417A", "T6423C"], "RdRp": ["K145R", "I483V"]}, "labels": {"aa": "RdRp: K145R, I483V"}}, "children": [{"name": "PP_006W07M|AREB14/P1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.164218, "strain": {"value": "PP_006W07M|AREB14/P1|nan/XXXX-XX-XX"}, "accession": "PP_006W07M", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "date_released": {"value": "2020-03-31"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850093.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850093.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W07M.1", "url": "https://pathoplexus.org/seq/PP_006W07M.1"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6464}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000044", "node_attrs": {"div": 0.164526, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G2225A", "C3611T"]}}, "children": [{"name": "PP_006W09H|AREB14/P3|nan/XXXX-XX-XX", "node_attrs": {"div": 0.164527, "strain": {"value": "PP_006W09H|AREB14/P3|nan/XXXX-XX-XX"}, "accession": "PP_006W09H", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "date_released": {"value": "2020-03-31"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850095.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850095.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W09H.1", "url": "https://pathoplexus.org/seq/PP_006W09H.1"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6528}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W08K|AREB14/P2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.164527, "strain": {"value": "PP_006W08K|AREB14/P2|nan/XXXX-XX-XX"}, "accession": "PP_006W08K", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "date_released": {"value": "2020-03-31"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850094.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850094.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W08K.1", "url": "https://pathoplexus.org/seq/PP_006W08K.1"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6562}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000045", "node_attrs": {"div": 0.159936, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T143C", "T1631C", "T1637C", "G2120A", "T2315C", "G5288A", "T5504C"]}}, "children": [{"name": "NODE_0000046", "node_attrs": {"div": 0.160289, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G1367A", "T2951C"]}}, "children": [{"name": "PP_006W0BD|ARLA17/NRC2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.166235, "strain": {"value": "PP_006W0BD|ARLA17/NRC2|nan/XXXX-XX-XX"}, "accession": "PP_006W0BD", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "date_released": {"value": "2020-03-31"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850097.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850097.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W0BD.1", "url": "https://pathoplexus.org/seq/PP_006W0BD.1"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6532}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}}, "branch_attrs": {"mutations": {"nuc": ["A197G", "C488T", "G512A", "C713T", "C776T", "A953T", "A1004G", "A1157G", "A1178G", "C1196T", "C1376T", "T1688C", "C1898T", "A2186G", "C2255T", "A2312C", "A2366G", "C2774T", "A2885G", "C2978T", "C3108T", "A3130G", "C3500A", "T3515A", "C3536T", "C3606T", "A3941G", "A3968G", "T4757C", "A4919G", "C4976T", "G5018A", "A5033G", "A5075C", "C5150T", "T5753C", "G6335A", "G6470A"], "RdRp": ["Q759H", "H1025Y", "E1032G"]}, "labels": {"aa": "RdRp: Q759H, H1025Y, E1032G"}}}, {"name": "PP_006VZ20|Epilink/96_2/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.162596, "strain": {"value": "PP_006VZ20|Epilink/96_2/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ20", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258156.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258156.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZ20.1", "url": "https://pathoplexus.org/seq/PP_006VZ20.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6546}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {"nuc": ["C481A", "T569C", "G734A", "G1106A", "A1259G", "T1523C", "G1925T", "T2564C", "C3035T", "A3794G", "A3806G", "G3848A", "T5231C", "G5333A", "C6051T"], "RdRp": ["P149Q"]}, "labels": {"aa": "RdRp: P149Q"}}}]}, {"name": "NODE_0000047", "node_attrs": {"div": 0.16242, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A950G", "T959C", "C1211T", "A1223G", "C1265T", "A1313T", "C1470T", "T1657C", "A2483G", "A4055G", "C4436T", "A4475G", "G4556A", "T5450C", "T5792C", "A5996G"], "RdRp": ["V541A"]}, "labels": {"aa": "RdRp: V541A"}}, "children": [{"name": "PP_006VZ7Q|NRC-6/18_05/21/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165863, "strain": {"value": "PP_006VZ7Q|NRC-6/18_05/21/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ7Q", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258161.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258161.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZ7Q.1", "url": "https://pathoplexus.org/seq/PP_006VZ7Q.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6548}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {"nuc": ["A167G", "G221A", "C344T", "C481A", "T569C", "G734A", "G1126A", "T2148C", "C2501T", "T2565C", "G2822A", "T2954C", "A3806G", "G3848A", "A4130G", "T4925A", "A4982G", "C4986T", "A5693G", "T6149C", "T6450C", "C6491T"], "RdRp": ["P149Q", "S364N"]}, "labels": {"aa": "RdRp: P149Q, S364N"}}}, {"name": "NODE_0000048", "node_attrs": {"div": 0.16535, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A86G", "G89A", "C147T", "C269T", "T680C", "A1001C", "A1139G", "A1178G", "A2120G", "C2123T", "C2543T", "A2846G", "T4172C", "T4592C", "G4670A", "T5555C", "C6191T", "G6398A", "G6455A"]}}, "children": [{"name": "PP_006VZX9|Epuyen/18-19_Patient_6_11/25/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165505, "strain": {"value": "PP_006VZX9|Epuyen/18-19_Patient_6_11/25/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZX9", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258185.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258185.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZX9.1", "url": "https://pathoplexus.org/seq/PP_006VZX9.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6546}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {"nuc": ["G3686A"]}}}, {"name": "NODE_0000049", "node_attrs": {"div": 0.165351, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZG6|Epuyen/18-19_Patient_18_12/31/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165352, "strain": {"value": "PP_006VZG6|Epuyen/18-19_Patient_18_12/31/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZG6", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258170.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258170.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZG6.1", "url": "https://pathoplexus.org/seq/PP_006VZG6.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6531}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000050", "node_attrs": {"div": 0.165352, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ8N|Epuyen/18-19_Patient_10_12/10/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165353, "strain": {"value": "PP_006VZ8N|Epuyen/18-19_Patient_10_12/10/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ8N", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258162.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258162.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZ8N.1", "url": "https://pathoplexus.org/seq/PP_006VZ8N.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6528}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000051", "node_attrs": {"div": 0.165353, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZDC|Epuyen/18-19_Patient_15_12/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165354, "strain": {"value": "PP_006VZDC|Epuyen/18-19_Patient_15_12/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZDC", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258167.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258167.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZDC.1", "url": "https://pathoplexus.org/seq/PP_006VZDC.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6531}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000052", "node_attrs": {"div": 0.165354, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2C9|Epuyen|Argentina/2022-XX-XX", "node_attrs": {"div": 0.165509, "strain": {"value": "PP_006W2C9|Epuyen|Argentina/2022-XX-XX"}, "accession": "PP_006W2C9", "author": {"author": "Coelho, R.; Kehl, S.; Periolo, N.; Alonso, D.; Bellomo, C.; Martinez, V.", "value": "Coelho, R.; Kehl, S.; Periolo, N.; Alonso, D.; Bellomo, C.; Martinez, V."}, "date_released": {"value": "2024-09-25"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Coelho et al."}, "INSDC_accession": {"value": "PQ215670.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PQ215670.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W2C9.1", "url": "https://pathoplexus.org/seq/PP_006W2C9.1"}, "country": {"value": "Argentina"}, "date": {"value": "2022-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6477}, "institution": {"value": "INEI ANLIS, Virology"}}, "branch_attrs": {"mutations": {"nuc": ["A6381G"], "RdRp": ["K2116E"]}, "labels": {"aa": "RdRp: K2116E"}}}, {"name": "NODE_0000053", "node_attrs": {"div": 0.165355, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000054", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZLX|Epuyen/18-19_Patient_22_1/1/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165511, "strain": {"value": "PP_006VZLX|Epuyen/18-19_Patient_22_1/1/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZLX", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258174.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258174.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZLX.1", "url": "https://pathoplexus.org/seq/PP_006VZLX.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6546}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {"nuc": ["T1688C"]}}}, {"name": "NODE_0000055", "node_attrs": {"div": 0.165357, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZVD|Epuyen/18-19_Patient_4_11/27/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165512, "strain": {"value": "PP_006VZVD|Epuyen/18-19_Patient_4_11/27/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZVD", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258183.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258183.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZVD.1", "url": "https://pathoplexus.org/seq/PP_006VZVD.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6542}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {"nuc": ["T5066C"]}}}, {"name": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165358, "strain": {"value": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ9L", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258163.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258163.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZ9L.1", "url": "https://pathoplexus.org/seq/PP_006VZ9L.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6529}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000056", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZWB", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258184.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258184.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZWB.1", "url": "https://pathoplexus.org/seq/PP_006VZWB.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6542}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000057", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZUF|Epuyen/18-19_Patient_3_11/20/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZUF|Epuyen/18-19_Patient_3_11/20/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZUF", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258182.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258182.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZUF.1", "url": "https://pathoplexus.org/seq/PP_006VZUF.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6539}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000058", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZH3|Epuyen/18-19_Patient_19_1/2/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZH3|Epuyen/18-19_Patient_19_1/2/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZH3", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258171.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258171.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZH3.1", "url": "https://pathoplexus.org/seq/PP_006VZH3.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6547}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000059", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZJ1|Epuyen/18-19_Patient_1_11/3/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZJ1|Epuyen/18-19_Patient_1_11/3/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZJ1", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258172.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258172.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZJ1.1", "url": "https://pathoplexus.org/seq/PP_006VZJ1.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6541}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000060", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZAJ", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258164.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258164.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZAJ.1", "url": "https://pathoplexus.org/seq/PP_006VZAJ.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6542}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000061", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZRM|Epuyen/18-19_Patient_27_1/8/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZRM|Epuyen/18-19_Patient_27_1/8/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZRM", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258179.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258179.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZRM.1", "url": "https://pathoplexus.org/seq/PP_006VZRM.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6533}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000062", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZKZ|Epuyen/18-19_Patient_20_1/1/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZKZ|Epuyen/18-19_Patient_20_1/1/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZKZ", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258173.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258173.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZKZ.1", "url": "https://pathoplexus.org/seq/PP_006VZKZ.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6539}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000063", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZSK", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258180.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258180.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZSK.1", "url": "https://pathoplexus.org/seq/PP_006VZSK.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6532}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000064", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZQP|Epuyen/18-19_Patient_26_1/4/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZQP|Epuyen/18-19_Patient_26_1/4/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZQP", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258178.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258178.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZQP.1", "url": "https://pathoplexus.org/seq/PP_006VZQP.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6541}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000065", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZPR|Epuyen/18-19_Patient_25_1/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZPR|Epuyen/18-19_Patient_25_1/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZPR", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258177.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258177.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZPR.1", "url": "https://pathoplexus.org/seq/PP_006VZPR.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6542}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000066", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZBG|Epuyen/18-19_Patient_13_12/24/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZBG|Epuyen/18-19_Patient_13_12/24/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZBG", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258165.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258165.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZBG.1", "url": "https://pathoplexus.org/seq/PP_006VZBG.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6541}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000067", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZTH|Epuyen/18-19_Patient_29_1/14/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZTH|Epuyen/18-19_Patient_29_1/14/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZTH", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258181.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258181.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZTH.1", "url": "https://pathoplexus.org/seq/PP_006VZTH.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6542}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000068", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZMV|Epuyen/18-19_Patient_23_1/7/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZMV|Epuyen/18-19_Patient_23_1/7/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZMV", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258175.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258175.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZMV.1", "url": "https://pathoplexus.org/seq/PP_006VZMV.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6531}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000069", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZY7|Epuyen/18-19_Patient_7_12/7/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZY7|Epuyen/18-19_Patient_7_12/7/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZY7", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258186.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258186.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZY7.1", "url": "https://pathoplexus.org/seq/PP_006VZY7.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6546}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000070", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZCE|Epuyen/18-19_Patient_14_12/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZCE|Epuyen/18-19_Patient_14_12/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZCE", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258166.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258166.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZCE.1", "url": "https://pathoplexus.org/seq/PP_006VZCE.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6543}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000071", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZF8|Epuyen/18-19_Patient_17_12/31/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZF8|Epuyen/18-19_Patient_17_12/31/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZF8", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258169.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258169.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZF8.1", "url": "https://pathoplexus.org/seq/PP_006VZF8.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6543}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000072", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W001|Epuyen/18-19_Patient_9_12/12/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006W001|Epuyen/18-19_Patient_9_12/12/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006W001", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258188.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258188.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W001.1", "url": "https://pathoplexus.org/seq/PP_006W001.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6549}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000073", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZNT", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258176.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258176.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZNT.1", "url": "https://pathoplexus.org/seq/PP_006VZNT.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6532}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000074", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZZ5", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258187.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258187.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZZ5.1", "url": "https://pathoplexus.org/seq/PP_006VZZ5.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6543}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZEA", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258168.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258168.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZEA.1", "url": "https://pathoplexus.org/seq/PP_006VZEA.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6541}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, "root_sequence": {"RdRp": "MEKYREIHQRVRDLAPGTVSALECIDLLDRLYAVRHDLVDQMIKHDWSDNKDVERPIGQVLLMAGIPNDIIQGMEKKIIPNSPSGQVLKSFFRMTPDNYKITGNLIEFIEVTVTADVSRGIREKKIKYEGGLQFVEHLLETESRKGNIPQPYKITFSVVAVKTDGSNISTQWPSRRNDGVVQHMRLVQADINYVREHLIKLDERASLEAMFNLKFHVSGPKLRYFNIPDYRPQQLCEPRIDNLIQYCKNWLTKEHKFVFKEVSGANVIQAFESHEQLHLQKYNESRKPRNFLLLQLTVQGAYLPSTISSDQCNTRIGCLEISKNQPETPVQMLALDISYKYLSLTRDELINYYSPRVHFQSSPNVKEPGTLKLGLSQLNPLSKSILDNVGKHKKDKGLFGEIIDSINVASQIQINACAKIIEQILSNLEINIGEINASMPSPNKTTGVDDLLNKFYDNELGKYMLSILRKTAAWHIGHLVRDITESLIAHAGLRRSKYWSVHAYDHGNVILFILPSKSLEVVGSYIRYFTVFKDGIGLIDADNIDSKAEIDGVTWCYSKVMSIDLNRLLALNIAFEKSLLATATWFQYYTEDQGHFPLQHALRSIFSFHFLLCVSQKMKLCAIFDNLRYLIPSVTSLYSGYELLIEKFFERPFKSSLDVYLYSIIKSLLISLAQNNKVRFYSRVRLLGLTVDHSTVGASGVYPSLMSRVVYKHYRSLISEATTCFFLFEKGLHGNLPEEAKIHLETIEWARKFQEKEKQYGDILLKEGYTIESVINGEVDVEQQLFCQEVSELSAQELNKYLQAKSQVLCANIMNKHWDKPYFSQTRNISLKGMSGALQEDGHLAASVTLIEAIRFLNRSQTNPNVIDMYEQTKQSKAQARIVRKYQRTEADRGFFITTLPTRVRLEIIEDYFDAIAKVVPEEYISYGGDKKVLNIQNALEKALRWASGVSEITTSTGKSIKFKRKLMYVSADATKWSPGDNSAKFRRFTQAIYDGLSDNKLKCCVVDALRNIYETEFFMSRKLHRYIDSMENHSDAVEDFLAFFSNGVSANVKGNWLQGNLNKCSSLFGAAVSLLFREVWKQLFPELECFFEFAHHSDDALFIYGYLEPEDDGTDWFLYVSQQIQAGNFHWHAINQEMWKSMFNLHEHLLLMGSIKVSPKKTTVSPTNAEFLSTFFEGCAVSIPFVKILLGSLSDLPGLGFFDDLAAAQSRCVKSLDLGACPQLAQLAIVLCTSKVERLYGTADGMVNSPTAFLKVNKAHVPVPLGGDGSMSIMELATAGFGMADKNILKNAFISYKHTRRDGDRYVLGLFKFLMSLSEDVFQHDRLGEFSFVGKVQWKVFTPKAEFEFHDQFSHNYLLEWTRQHPVYDYIIPRNRDNLLVYLVRKLNDPSIITAMTMQSPLQLRFRMQAKQHMKVCRYEGEWVTFREVLAAADSFATSYQPTERDMDLFNTLVSCTFSKEYAWKDFLNEVRCEVLTTRHVHRPKIARTFTVREKDQAIQNPINSVIGYKYALTVDEVSDVLDSAFFPESLSADLQVMKDGVYRELGLDISSPEVLKRIAPLLYKAGRSRVVIVEGNVEGTAESICSYWLKTMSLIKTIRVRPKKEVLKAMSLYSVKENIGLQDDIAATRLCIEIWRWCKANEQDVKEWLTSLYFEKQTLMDWVERFRRKGVVPIDPEIQCIGLLLYDVLGYKSVLQMQANRRAYSGKQYDAYCVQTYNEETKLYEGDLRVTFNFGLDCARLEVFWDKKEYILETSITQRHVLRLLMEEVSQELIRCGMRFKTEQVNQTRSLVLFKTEAGFEWGKPNVPCIVYKHCVLRTGLRTKQPINKEFMINVQSDGFRAIAQMDIESPRFLLAHAYHTLRDIRYQAVQAVGNVWFKTEQHKLFINPIISSGLLENFMKGLPAAIPPAAYSLIMNKAKISVDLFMFNELLALINRNNILNLDGIEETSEGYSTVTSMSSKQWSEEMSLMSDDDIDDMEDFTIALDDIDFEQINLEEDIQHFLQDESAYVGDLLIQTEDIEVKKIRGVTRVLEPVKLLKSWVSKGLAIDKVYNPIGIILMARYMSKTYNFSSTPLALLNPYDLTELESVVKGWGETVNDRFKDLDIEAQTVVKEKGVQPEDVLPDSLFSFRHVDVLLRRLFPRDPVSTFY*", "nuc": "TAGTAGTAGACTCCGGGATAGAAAAAGTTAGAAAAATGGAAAAGTATAGAGAGATTCATCAGAGAGTTAGGGACCTTGCACCTGGAACGGTATCAGCATTAGAATGCATAGATCTACTGGATAGGCTCTACGCTGTCAGACATGACCTGGTTGACCAGATGATAAAACATGACTGGTCTGATAATAAAGATGTAGAAAGACCTATAGGTCAAGTTTTACTGATGGCTGGCATACCTAATGATATTATACAAGGCATGGAGAAGAAGATTATACCAAATAGCCCTTCTGGACAAGTATTGAAAAGCTTTTTCCGAATGACACCAGATAATTATAAAATTACAGGTAACTTGATTGAGTTTATTGAAGTGACTGTAACAGCTGATGTGTCACGAGGTATTAGGGAGAAGAAAATAAAGTATGAAGGAGGCCTCCAATTTGTTGAGCACTTACTGGAAACTGAATCAAGGAAGGGTAATATACCGCAACCTTATAAAATAACATTCTCAGTGGTTGCAGTTAAAACAGATGGATCAAACATCTCGACTCAGTGGCCCAGTCGGAGGAACGATGGGGTAGTTCAGCACATGCGTCTAGTCCAAGCTGATATAAATTATGTCAGAGAGCATTTAATAAAGTTAGATGAGAGAGCATCTTTGGAGGCAATGTTTAACTTAAAGTTCCATGTATCAGGCCCTAAACTGAGATACTTTAACATCCCTGATTATAGACCACAGCAGCTATGTGAACCACGGATTGACAACTTAATACAATATTGCAAGAATTGGTTGACAAAAGAACATAAGTTTGTATTCAAAGAAGTCAGTGGAGCTAATGTGATTCAAGCATTTGAGAGTCATGAACAGTTACATTTACAGAAATACAACGAATCACGAAAACCAAGAAATTTTTTACTCTTGCAGCTTACAGTGCAAGGGGCATATCTACCATCAACAATCAGTTCTGACCAGTGCAATACTAGGATTGGGTGTCTAGAAATATCAAAAAACCAACCAGAAACACCAGTACAGATGCTTGCATTGGATATATCTTATAAGTATCTGAGTCTTACAAGGGATGAGTTGATCAATTATTATAGCCCTAGAGTGCACTTTCAATCGAGCCCTAATGTGAAGGAACCAGGGACACTGAAGTTAGGATTATCACAATTAAATCCACTCTCTAAATCAATTCTTGACAATGTTGGAAAGCATAAAAAGGATAAAGGATTATTTGGTGAGATCATAGATAGCATAAATGTGGCAAGTCAAATACAGATCAATGCATGTGCAAAAATAATTGAGCAGATCTTATCAAATCTTGAAATAAACATTGGAGAAATAAATGCTAGTATGCCTTCTCCTAATAAGACAACAGGTGTAGATGACCTGTTAAATAAATTTTATGATAATGAGCTTGGTAAATATATGTTATCCATTCTGAGGAAAACAGCAGCATGGCATATAGGCCATCTAGTCAGAGATATCACAGAAAGTTTAATTGCACATGCTGGGCTGCGCCGTTCTAAATATTGGTCAGTACATGCATATGACCATGGGAATGTAATTTTGTTTATCTTGCCATCAAAGTCACTAGAGGTAGTAGGTTCTTATATAAGGTATTTCACAGTATTTAAAGATGGTATAGGGTTGATAGACGCAGATAATATTGATTCTAAGGCCGAAATTGATGGTGTCACCTGGTGTTATTCTAAGGTCATGAGTATTGATTTAAACAGGTTATTGGCTTTGAACATAGCTTTTGAGAAGTCACTTCTTGCCACGGCTACATGGTTCCAATATTATACTGAAGACCAAGGCCATTTTCCCCTTCAACATGCATTAAGGTCAATCTTTTCTTTCCACTTTTTACTCTGTGTGTCACAAAAGATGAAGCTATGTGCAATATTTGATAACCTTCGTTATCTGATACCATCAGTAACATCTTTGTACTCTGGGTACGAGTTGTTAATAGAAAAATTCTTTGAGAGACCATTTAAGAGTTCACTGGATGTATACCTTTATTCTATCATAAAATCTCTATTAATTAGTTTGGCACAAAATAATAAAGTTCGATTTTACTCAAGAGTTCGTTTGTTAGGATTGACAGTTGATCACTCCACGGTCGGAGCAAGTGGTGTTTACCCCTCTTTAATGTCCCGTGTTGTTTACAAACATTACAGAAGTTTAATCTCTGAAGCTACAACTTGTTTTTTCTTATTTGAAAAGGGTTTGCATGGGAATTTACCAGAAGAGGCTAAAATACATCTTGAAACCATTGAATGGGCTCGGAAGTTCCAGGAGAAAGAAAAACAATATGGTGATATTCTTCTAAAGGAAGGCTATACAATTGAATCTGTAATCAATGGAGAAGTTGATGTAGAACAACAGCTTTTTTGTCAGGAGGTCTCAGAGCTAAGTGCACAAGAGCTCAACAAATATTTACAGGCAAAATCTCAAGTTTTATGTGCTAATATCATGAATAAACACTGGGACAAACCATATTTCAGTCAAACACGCAATATCAGTCTCAAGGGAATGTCTGGGGCATTGCAAGAGGATGGACATTTAGCTGCTAGTGTGACACTGATTGAAGCAATTAGGTTTTTAAATAGATCACAAACCAATCCAAATGTTATTGATATGTATGAGCAGACTAAACAATCAAAGGCACAAGCTAGGATTGTTAGGAAATACCAGAGAACAGAAGCAGATAGAGGATTTTTTATCACAACATTACCAACTAGGGTGCGATTAGAAATAATAGAAGATTATTTCGATGCAATTGCAAAGGTTGTGCCTGAAGAATATATTTCTTATGGTGGGGATAAAAAAGTTCTAAATATTCAGAATGCACTAGAGAAAGCACTTAGATGGGCATCTGGAGTATCAGAAATTACAACAAGCACTGGTAAAAGCATCAAGTTTAAGCGGAAATTAATGTATGTTAGTGCTGATGCCACAAAATGGTCACCAGGAGATAATTCTGCTAAGTTTAGGAGATTTACACAAGCAATATATGATGGCTTATCAGACAACAAACTGAAATGTTGTGTTGTTGATGCATTACGTAACATTTATGAGACTGAATTTTTTATGTCCAGGAAATTACACCGATATATTGATAGTATGGAAAATCATTCAGATGCGGTTGAAGATTTCTTGGCATTTTTCTCAAATGGAGTCTCAGCCAATGTAAAGGGAAACTGGCTTCAAGGGAACTTAAATAAATGCTCATCATTATTTGGTGCTGCTGTCTCATTACTTTTTCGGGAGGTCTGGAAACAATTGTTTCCAGAATTAGAGTGTTTTTTTGAATTTGCACATCATTCAGATGATGCATTGTTCATTTATGGCTATCTGGAGCCTGAAGATGATGGAACAGATTGGTTTTTGTATGTATCACAGCAGATACAGGCAGGAAACTTTCATTGGCATGCTATAAATCAAGAGATGTGGAAGAGCATGTTTAATCTACATGAGCACTTACTATTAATGGGTTCTATTAAAGTGTCACCTAAGAAGACAACAGTATCACCTACTAATGCAGAATTTCTTTCTACTTTTTTTGAAGGTTGTGCTGTGTCAATCCCTTTTGTTAAAATCTTACTGGGTTCATTATCAGATCTTCCTGGGTTAGGTTTCTTTGATGATTTAGCAGCAGCACAAAGCAGATGTGTAAAGTCACTAGATTTGGGTGCTTGCCCACAATTAGCTCAACTAGCTATAGTATTATGCACAAGCAAAGTTGAGAGGTTGTATGGTACTGCTGATGGAATGGTAAACTCTCCAACAGCATTCCTTAAGGTGAATAAAGCACACGTACCAGTACCACTTGGTGGTGATGGCTCAATGTCTATTATGGAGCTTGCAACAGCTGGTTTTGGGATGGCAGATAAGAATATTTTAAAAAATGCATTCATATCTTATAAGCATACTCGTAGAGATGGTGATAGGTACGTATTGGGTTTATTTAAATTTTTGATGTCATTAAGTGAGGATGTATTCCAGCACGACCGATTGGGTGAGTTTAGTTTTGTAGGTAAAGTTCAATGGAAAGTGTTCACTCCTAAAGCTGAATTTGAATTTCATGATCAATTTTCACATAATTATTTATTAGAGTGGACACGTCAACATCCTGTGTATGACTATATTATTCCTAGAAATAGAGATAATTTGCTTGTATACCTTGTAAGAAAGTTGAATGATCCTAGCATCATTACAGCTATGACTATGCAGTCACCATTACAACTTCGTTTCCGTATGCAAGCAAAGCAACATATGAAAGTATGCCGGTATGAAGGTGAATGGGTCACATTCAGGGAGGTACTTGCTGCAGCTGATAGTTTTGCTACGAGTTACCAACCTACTGAAAGGGACATGGATCTCTTTAATACACTTGTAAGTTGTACATTTTCTAAAGAGTATGCTTGGAAAGACTTTTTAAATGAAGTAAGGTGTGAGGTCTTAACAACAAGACATGTACATAGGCCTAAAATTGCTAGGACATTCACTGTTAGAGAAAAGGACCAGGCTATACAAAATCCAATAAATTCGGTGATTGGCTATAAGTATGCTCTTACAGTGGATGAAGTCAGTGATGTTCTTGATAGTGCATTCTTCCCAGAGTCTCTATCTGCAGACTTACAGGTTATGAAAGATGGAGTTTACAGAGAATTAGGACTTGATATAAGTTCTCCTGAAGTCCTAAAACGCATAGCACCACTATTATATAAGGCAGGAAGGTCACGTGTTGTTATTGTGGAAGGAAATGTAGAAGGGACAGCTGAGTCAATCTGTAGTTATTGGCTCAAGACAATGTCACTGATTAAAACAATCAGAGTAAGACCTAAGAAGGAGGTACTGAAAGCTATGTCTTTATATAGTGTTAAAGAAAATATTGGATTGCAGGATGATATTGCAGCAACTCGACTATGCATAGAAATCTGGAGATGGTGTAAGGCAAATGAACAGGATGTTAAAGAATGGCTAACATCTCTGTACTTTGAAAAACAGACATTGATGGATTGGGTAGAAAGGTTTAGAAGGAAAGGAGTTGTTCCTATTGATCCTGAAATACAATGTATTGGCCTACTCTTATATGATGTATTAGGTTATAAAAGTGTGTTACAAATGCAAGCAAACCGAAGAGCCTATTCAGGTAAGCAATATGATGCATACTGTGTGCAAACATATAACGAGGAAACAAAACTATATGAAGGTGACCTTCGTGTTACTTTTAATTTTGGTTTAGATTGTGCAAGGTTAGAAGTTTTTTGGGATAAAAAAGAGTATATCTTAGAGACATCTATCACCCAACGACATGTGTTGCGGTTACTGATGGAAGAAGTGTCACAAGAATTAATTAGATGTGGAATGAGATTCAAAACAGAGCAAGTCAATCAAACTCGGAGCTTAGTGTTATTCAAAACAGAGGCTGGTTTTGAATGGGGTAAGCCTAATGTGCCATGTATTGTATATAAACACTGTGTCTTGAGAACTGGGCTTCGTACGAAACAGCCAATTAATAAAGAGTTCATGATAAATGTACAAAGTGATGGTTTCCGTGCAATAGCACAGATGGATATTGAGAGTCCACGGTTCTTGTTAGCACATGCATATCATACACTGCGTGATATTAGATATCAAGCAGTGCAGGCAGTAGGGAATGTATGGTTTAAAACAGAACAGCACAAACTATTTATTAACCCAATTATATCATCAGGGCTTTTAGAAAACTTTATGAAAGGCTTACCTGCTGCCATACCTCCTGCTGCATATTCCCTCATAATGAACAAGGCTAAGATTTCTGTGGATTTGTTTATGTTCAATGAGCTATTAGCACTTATAAATAGGAATAATATCCTCAACCTTGATGGGATTGAAGAAACATCTGAAGGTTATAGTACTGTGACATCAATGTCTAGCAAGCAGTGGTCTGAAGAGATGAGTTTAATGTCTGATGATGATATTGATGATATGGAGGACTTTACTATAGCACTGGATGATATTGACTTTGAACAAATAAATTTGGAAGAGGATATACAACACTTTCTGCAGGATGAATCAGCATATGTTGGTGATTTATTGATTCAGACAGAAGACATTGAGGTTAAAAAGATACGTGGGGTGACAAGAGTATTAGAGCCAGTCAAGCTATTAAAAAGCTGGGTTTCTAAAGGCCTTGCTATAGACAAAGTATACAATCCTATCGGGATAATCTTAATGGCAAGATACATGTCAAAAACATACAATTTCAGTTCAACACCTCTTGCACTATTAAATCCATATGACTTGACAGAACTTGAAAGTGTTGTAAAGGGATGGGGAGAAACTGTAAATGATCGATTCAAAGATTTAGATATTGAGGCACAAACAGTTGTTAAAGAAAAGGGTGTACAGCCAGAAGATGTACTCCCTGATTCATTATTCTCTTTCAGGCATGTTGATGTTTTGCTGCGAAGGTTGTTCCCGCGTGACCCTGTATCAACATTCTATTAGTGGATTTTATACCTTATTCATACAGTATGTATATTGTAGTGTTCTTTTCCCGGAGCATACTACTA"}} \ No newline at end of file +{"version": "v2", "meta": {"title": "Andes Virus L Segment (ANDV)", "updated": "2026-05-12", "build_url": "https://github.com/nextstrain/andv", "data_provenance": [{"name": "Pathoplexus", "url": "https://pathoplexus.org/"}], "maintainers": [{"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}], "display_defaults": {"map_triplicate": false, "color_by": "outbreak", "distance_measure": "div"}, "genome_annotations": {"RdRp": {"end": 6497, "seqid": "defaults/l/reference.gb", "start": 36, "strand": "+", "type": "CDS"}, "nuc": {"end": 6562, "start": 1, "strand": "+", "type": "source"}}, "colorings": [{"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "date", "title": "Collection Date", "type": "categorical"}, {"key": "region", "title": "Region", "type": "categorical", "scale": [["Africa", "#CEB541"], ["Europe", "#E39B39"], ["South America", "#E56C2F"]]}, {"key": "country", "title": "Country", "type": "categorical"}, {"key": "division", "title": "Admin Division", "type": "categorical"}, {"key": "host", "title": "Host", "type": "categorical"}, {"key": "abbr_authors", "title": "Authors", "type": "categorical"}, {"key": "dataUseTerms", "title": "Data use terms", "type": "categorical"}, {"key": "restrictedUntil", "title": "Restricted Until", "type": "categorical"}, {"key": "date_released", "title": "Release Date", "type": "categorical"}, {"key": "length", "title": "Length", "type": "continuous"}, {"key": "INSDC_accession", "title": "INSDC Accession", "type": "categorical"}, {"key": "PPX_accession", "title": "Pathoplexus Accession", "type": "categorical"}, {"key": "institution", "title": "Author Affiliations", "type": "categorical"}, {"key": "totalAmbiguousNucs", "title": "Ambiguous Nucleotides", "type": "continuous"}, {"key": "outbreak", "title": "outbreak", "type": "categorical"}], "filters": ["country", "division", "host", "abbr_authors", "clade_membership"], "geo_resolutions": [{"key": "country", "demes": {"Brazil": {"latitude": -10.3333332, "longitude": -53.1999999}, "Switzerland": {"latitude": 46.8182, "longitude": 8.2275}, "South Africa": {"latitude": -28.8166235, "longitude": 24.991639}, "Netherlands": {"latitude": 52.1326, "longitude": 5.2913}, "Paraguay": {"latitude": -23.3165935, "longitude": -58.1693445}, "Chile": {"latitude": -31.7613364, "longitude": -71.3187696}, "Argentina": {"latitude": -37.052315, "longitude": -64.869142}}}], "panels": ["tree", "entropy"], "extensions": {"nextclade": {"clade_node_attrs": [{"name": "outbreak", "displayName": "Outbreak", "description": "Annotation of recent outbreaks (to be refined)", "skipAsReference": false}]}}}, "tree": {"name": "NODE_0000000", "node_attrs": {"div": 0, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T47C", "T77G", "C88G", "C107T", "C146T", "C147T", "C173T", "T182C", "T191C", "G192A", "A200G", "T209C", "T215C", "G221C", "C230T", "T245C", "C254A", "G260A", "A272C", "C281T", "T285A", "T287A", "A290C", "A293G", "G294A", "A296T", "G299A", "C311T", "C312A", "A323T", "A331T", "T332C", "T338A", "T344C", "G350C", "A374C", "T395A", "G401A", "G404A", "A410G", "G424A", "C431T", "C432A", "A434G", "C444A", "A445G", "C446T", "G452T", "C457T", "T462G", "G470A", "G482A", "A485G", "A493G", "C503T", "T512G", "T518C", "C536T", "C539T", "G542A", "G548A", "C554T", "C558A", "G563A", "C566T", "G572T", "T590C", "C591T", "A608T", "C617G", "A632T", "A647G", "T653C", "G656A", "A674G", "G677A", "C680T", "A686C", "T695A", "G701A", "A704G", "C707T", "C713T", "A728G", "G737A", "A746G", "A749T", "C750A", "G751A", "A770G", "A792G", "A797G", "A815G", "G823C", "T824A", "G836T", "A842G", "A845C", "G851A", "T864G", "A866G", "A872G", "C873A", "A878G", "C881T", "C884T", "A896G", "A899T", "C914G", "T915C", "T923A", "G929A", "A938C", "C956T", "C971T", "A972G", "T983A", "G986C", "A995G", "A1004G", "C1007T", "A1013T", "G1023A", "A1025T", "G1028A", "T1034A", "A1046C", "T1047G", "C1059T", "T1064C", "G1072A", "G1079A", "T1080C", "G1082T", "C1085A", "C1097T", "G1102A", "T1116G", "G1118A", "G1133A", "G1142A", "A1157T", "A1160T", "C1178T", "T1190C", "T1193A", "C1196T", "T1227C", "G1238A", "G1257A", "G1259T", "C1277T", "A1289T", "A1293G", "A1295T", "T1319A", "C1328T", "A1334G", "A1337G", "T1339C", "T1358C", "A1370C", "T1376A", "A1379T", "C1385G", "C1386T", "T1389C", "A1391G", "A1397G", "T1415A", "C1433T", "T1436A", "A1445G", "A1454C", "A1472T", "A1478G", "A1490G", "A1496G", "C1517T", "C1550T", "T1565A", "T1571C", "C1574A", "C1590T", "G1595A", "A1598T", "T1610C", "T1619C", "A1625T", "G1646C", "G1649A", "C1655T", "G1656C", "T1661C", "T1670C", "T1691G", "C1694T", "C1696T", "C1697A", "T1709A", "G1712A", "C1715T", "C1733T", "G1736A", "G1748A", "C1751T", "T1757A", "G1763A", "C1778A", "G1781A", "T1784A", "C1793T", "C1811T", "A1814G", "T1823C", "T1829A", "A1832G", "A1847C", "A1848G", "T1865C", "C1871A", "G1875A", "C1917A", "G1925T", "A1934T", "A1937C", "T1944C", "C1949T", "G1955T", "C1958T", "T1962C", "A1970T", "A1976G", "T1994C", "T2018A", "C2027A", "A2033G", "T2036A", "C2037T", "A2039G", "T2045A", "G2051A", "T2069A", "A2072G", "C2078T", "G2083A", "C2088A", "T2090A", "G2093A", "A2099T", "T2100C", "C2114T", "C2117T", "G2120A", "C2123A", "A2126T", "C2141T", "C2144A", "T2147A", "T2148C", "A2150G", "T2159G", "T2165C", "C2168T", "C2177T", "A2180G", "A2186G", "C2189T", "T2192A", "T2198A", "C2213T", "G2225A", "G2237T", "A2249G", "G2252A", "T2255A", "C2265T", "T2267A", "A2270G", "T2285A", "G2288A", "G2291A", "C2294T", "G2300A", "A2308T", "C2310A", "C2328T", "C2360A", "T2372A", "G2373A", "A2384G", "T2390A", "T2393C", "G2399A", "C2405T", "C2412T", "C2429T", "C2432T", "T2459A", "A2462G", "T2480C", "C2486T", "C2504T", "T2525C", "C2528A", "G2543T", "G2544A", "T2547C", "T2548A", "G2555A", "A2582T", "C2583T", "A2591G", "T2597A", "C2621A", "T2624C", "G2648A", "T2654A", "A2660T", "C2662A", "A2663C", "G2678A", "G2687A", "C2693T", "G2696A", "T2733C", "T2741A", "G2747T", "C2748A", "A2753G", "A2756G", "A2762T", "C2774T", "T2783A", "G2795C", "T2810A", "T2813A", "G2822A", "A2831G", "G2832A", "T2834C", "C2835T", "T2843C", "A2861G", "G2883A", "C2903T", "T2906A", "A2913G", "G2914T", "G2921A", "C2957T", "A2975G", "T2984A", "T2987C", "G2990A", "G2996A", "C3023G", "T3024C", "A3026T", "A3038G", "C3039T", "G3041A", "A3062C", "T3063A", "C3066A", "T3068A", "T3074A", "T3083A", "C3098T", "A3131T", "A3132G", "T3134A", "G3146A", "G3150A", "A3152G", "G3161A", "C3170T", "A3174G", "A3179T", "C3182T", "A3185T", "C3188T", "A3190T", "G3197A", "C3207T", "T3209A", "C3218T", "G3252A", "C3254A", "C3261T", "T3263G", "G3272A", "C3275A", "A3281G", "G3302A", "T3305C", "A3320C", "A3329T", "C3344T", "C3353T", "C3357T", "G3359A", "G3362A", "A3377C", "G3392A", "A3401T", "G3404A", "G3407A", "G3413A", "C3422T", "T3424A", "G3449A", "C3461T", "T3483C", "A3488T", "T3515A", "G3521A", "A3527T", "A3530G", "T3536A", "T3539A", "A3548G", "T3554G", "T3560A", "G3581A", "T3590A", "C3602A", "C3606T", "T3623C", "C3624T", "T3626G", "G3632T", "T3633C", "T3651C", "A3656T", "C3668T", "C3684T", "T3690C", "G3692A", "T3698A", "A3704T", "A3707G", "T3713A", "C3734T", "C3740T", "T3761A", "T3764A", "C3782T", "A3788T", "C3797T", "C3798T", "T3800A", "G3806A", "T3809A", "G3813T", "C3818T", "A3827T", "T3833A", "A3848T", "T3857A", "T3866A", "A3869C", "T3899C", "T3902C", "A3908G", "A3920C", "G3929A", "T3932C", "A3941G", "C3956T", "G3962A", "T3977C", "C4004T", "C4010T", "C4013T", "C4014A", "G4019A", "T4031C", "T4046C", "C4061T", "T4073A", "A4105G", "T4113G", "T4114G", "G4118T", "G4139T", "T4163C", "C4184T", "C4214T", "T4253A", "C4256T", "G4271A", "A4274G", "C4289T", "C4316T", "G4319A", "G4322A", "A4325T", "T4331A", "G4352A", "G4354A", "C4366G", "G4373A", "C4385G", "T4397G", "T4415A", "A4418G", "G4421A", "T4427A", "C4436T", "G4487A", "T4499A", "T4514C", "T4532A", "A4535T", "A4547T", "G4553A", "T4565C", "C4575A", "T4577G", "A4580T", "G4590A", "C4592A", "T4601C", "C4602T", "T4604A", "C4616T", "A4622T", "G4625T", "C4640T", "T4658A", "T4664A", "C4667T", "T4674C", "A4676T", "C4680T", "T4682G", "A4688T", "C4703T", "C4704T", "A4739G", "T4754A", "G4760A", "A4772T", "G4778C", "T4784A", "C4808T", "C4821T", "T4826C", "A4838G", "A4841T", "A4844G", "T4847C", "G4850A", "C4860T", "T4868A", "T4874A", "G4882A", "T4883C", "T4886C", "T4898C", "G4904A", "G4907A", "A4931G", "C4934T", "A4940G", "A4961T", "A4967T", "T4994A", "C4995T", "C5000T", "T5016C", "G5018T", "A5034C", "T5039C", "A5042G", "A5043C", "G5045A", "A5061G", "C5093G", "T5094C", "A5105T", "G5123T", "C5150A", "G5162A", "C5177T", "T5192C", "C5195T", "A5204T", "T5225A", "A5258T", "A5267G", "G5268A", "A5282G", "A5284G", "G5288A", "C5294A", "T5295C", "G5300A", "C5312A", "G5324A", "T5325C", "C5328A", "T5331C", "A5333G", "G5348T", "A5354G", "A5357G", "A5361G", "A5364C", "A5372G", "A5376C", "C5381T", "G5390A", "A5393G", "C5406A", "G5408A", "T5412C", "A5426G", "A5444G", "T5456A", "G5462T", "A5480G", "G5492A", "A5493C", "G5501A", "C5502T", "T5504A", "T5507G", "G5510A", "A5519T", "A5540C", "A5546T", "A5550T", "G5551C", "T5585G", "A5594T", "C5595A", "G5603A", "T5604C", "C5625T", "A5634G", "A5637C", "A5639G", "G5651T", "A5669T", "C5690T", "T5711A", "A5717T", "A5720T", "T5726C", "T5738C", "C5747T", "C5759A", "C5780A", "C5781T", "C5783G", "C5792T", "G5801A", "T5804A", "G5810A", "T5819C", "A5840T", "G5852T", "C5864A", "A5885G", "T5903C", "T5906A", "G5909A", "C5924T", "G5927A", "G5942A", "T5957A", "C5984T", "T5987C", "T5990A", "A6020G", "A6023T", "T6027C", "G6029T", "C6047T", "G6053T", "A6065T", "A6068T", "T6074A", "A6083G", "G6086A", "G6092A", "C6101T", "G6107A", "G6125T", "G6128T", "A6146T", "C6149G", "A6150C", "A6151G", "C6164T", "A6176G", "C6180T", "T6182A", "A6188T", "A6197T", "T6203C", "C6209T", "A6215C", "C6218T", "T6219C", "A6227T", "C6248T", "T6257C", "A6261G", "T6266A", "T6269A", "T6276C", "A6284T", "C6290T", "G6293A", "A6299G", "C6300T", "T6302A", "G6317A", "A6320T", "A6326T", "A6329G", "A6335G", "C6342A", "A6344G", "T6353G", "A6382G", "G6389A", "G6398A", "A6401T", "A6422T", "A6425G", "C6434T", "T6450C", "G6452C", "C6453T", "C6467T", "G6470A", "C6476T", "A6485C", "A6496G", "G6497A", "T6502A", "C6509T", "A6556G"], "RdRp": ["V53I", "S84T", "V87I", "Y99F", "I126M", "G130E", "Q133K", "H137S", "T141I", "S143A", "K153R", "L201T", "R239K", "K253E", "S263T", "S273G", "L277E", "N313D", "S338A", "R346K", "I350V", "R356K", "S361A", "L371I", "V408I", "I420V", "I435T", "A437V", "S438G", "N443H", "D450E", "A541S", "T554I", "I605V", "R683K", "Q759K", "I775T", "L838Q", "S876N", "V933I", "S960V", "E1032D", "N1033E", "E1039K", "N1047G", "N1052V", "V1073I", "F1130Y", "N1258K", "A1260S", "V1264I", "A1346S", "N1357S", "L1360G", "T1444S", "L1514M", "V1519I", "D1541E", "T1593A", "E1644D", "V1745I", "I2023V", "K2039R", "D2106E", "K2116R"]}, "labels": {"aa": "RdRp: V53I, S84T, V87I, Y99F, I126M, G130E, Q133K, H137S, T141I, S143A, K153R, L201T, R239K, K253E, S263T, S273G, L277E, N313D, S338A, R346K, I350V, R356K, S361A, L371I, V408I, I420V, I435T, A437V, S438G, N443H, D450E, A541S, T554I, I605V, R683K, Q759K, I775T, L838Q, S876N, V933I, S960V, E1032D, N1033E, E1039K, N1047G, N1052V, V1073I, F1130Y, N1258K, A1260S, V1264I, A1346S, N1357S, L1360G, T1444S, L1514M, V1519I, D1541E, T1593A, E1644D, V1745I, I2023V, K2039R, D2106E, K2116R"}}, "children": [{"name": "NODE_0000001", "node_attrs": {"div": 0.0252458, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C74G", "G89T", "C131T", "A188G", "A198C", "G200C", "T216C", "T269A", "T297C", "T308C", "A320T", "T348C", "T362A", "A365G", "G368T", "A395G", "A477T", "C486G", "T605C", "T636A", "T637C", "C671T", "A698G", "C716T", "G770T", "G803A", "A852G", "T854G", "T977A", "A1037T", "A1115G", "C1146A", "G1148A", "T1158C", "A1166G", "A1184G", "C1191T", "A1205T", "A1239G", "A1296G", "T1298G", "T1346A", "T1355A", "T1361A", "A1362C", "G1412A", "T1493C", "T1508A", "C1512T", "T1520A", "C1679A", "A1682T", "A1781T", "G1844A", "C1850A", "C1869T", "T1919G", "G1961A", "T2049C", "A2051T", "A2066G", "G2102A", "C2156A", "C2157A", "C2165T", "T2214C", "A2225G", "A2246T", "C2286A", "T2354A", "G2531A", "T2661A", "A2699G", "C2843A", "G2858A", "G2927A", "A3029T", "C3071T", "T3167C", "A3175G", "C3267A", "C3552T", "T3563C", "C3587A", "A3773T", "T3785A", "T3875A", "C3902A", "A3974G", "G3995A", "A4016G", "T4157A", "G4175A", "T4223A", "A4265G", "A4354C", "T4364A", "T4440C", "C4526T", "C4562A", "T4574A", "T4634A", "A4700T", "A4812G", "A4882G", "C4898A", "A4901C", "C4943T", "G5012A", "G5061A", "C5088T", "A5129G", "G5183T", "A5207G", "T5262C", "A5264T", "C5309T", "C5316A", "G5372T", "G5432A", "T5450A", "C5483T", "C5489A", "T5498A", "G5597A", "A5615T", "G5639C", "T5771A", "A5774T", "A5786C", "T5835C", "G5851A", "A5864T", "G5981A", "C6011T", "C6153T", "T6291C", "G6329A", "T6332A", "A6395C", "A6410T", "T6462C", "A6482G", "C6491T", "G6533T"], "RdRp": ["D13E", "T18S", "I148L", "P151A", "V330I", "I402V", "I421V", "E549D", "V614M", "A837T", "Q875H", "L1010I", "E1361D", "E1555D"]}, "labels": {"aa": "RdRp: D13E, T18S, I148L, P151A, V330I, I402V, I421V, E549D, V614M, A837T, Q875H, L1010I, E1361D, E1555D"}}, "children": [{"name": "PP_006W1X5|13796_L|Argentina|1990|Argentina/1990-XX-XX", "node_attrs": {"div": 0.1505, "strain": {"value": "PP_006W1X5|13796_L|Argentina|1990|Argentina/1990-XX-XX"}, "accession": "PP_006W1X5", "author": {"author": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J.", "value": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J."}, "date": {"value": "1990-XX-XX"}, "abbr_authors": {"value": "Shedroff et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP058739.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP058739.1"}, "PPX_accession": {"value": "PP_006W1X5.1", "url": "https://pathoplexus.org/seq/PP_006W1X5.1"}, "institution": {"value": "Centers for Disease Control and Prevention, Viral Special Pathogens Branch"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-04-30"}, "host": {"value": "mice and others"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6623}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["T1G", "A2G", "A26G", "G27T", "T29G", "G44A", "C47T", "A54G", "C60A", "G62A", "T68C", "A92T", "T99C", "A101T", "A110T", "C117T", "G119A", "C128G", "A138C", "A140G", "T152A", "A167G", "T185C", "C191T", "T203A", "C209G", "A212G", "C215T", "T236C", "A254G", "G263A", "T281C", "T284A", "C290T", "G293A", "A294C", "C305T", "A314G", "A341T", "C344T", "C350T", "G356A", "T359C", "T368C", "A377T", "T380A", "A392T", "G410A", "A411C", "G416A", "C428A", "C429A", "T440G", "G443A", "G467A", "T476C", "A479G", "A495C", "T504G", "C505G", "A506G", "G509A", "A524T", "A530T", "T557C", "A563G", "T569C", "T578G", "G581A", "C584T", "A593G", "T595C", "C596T", "T602C", "T608A", "A613T", "A629G", "A636G", "A638T", "A650T", "C653A", "T654C", "A656G", "A662T", "A695C", "C699T", "G728A", "A731T", "C738T", "A740G", "T749C", "G752T", "A764G", "C768G", "A769G", "T773C", "A794G", "G797A", "A809C", "C812T", "C821A", "A827T", "T836C", "T839A", "C845T", "G853A", "G854A", "C855T", "A856G", "G863T", "T865A", "T870A", "T871A", "G875A", "T884C", "T899C", "A900C", "A902T", "T908C", "T909C", "C912T", "C915T", "A923G", "A929T", "A932G", "A947G", "A950G", "T962A", "G968A", "G980A", "A983C", "C986G", "A992T", "G1004A", "T1013G", "C1032T", "T1038C", "A1051T", "T1058C", "G1061A", "C1065T", "T1067A", "G1073A", "G1106T", "C1109T", "A1118T", "A1142T", "A1175T", "C1190T", "A1193G", "T1199C", "T1202A", "G1208A", "G1217A", "T1220G", "A1226C", "C1227A", "C1241A", "A1253C", "C1261A", "A1268G", "T1289A", "A1291C", "G1298A", "G1301A", "G1304A", "A1313T", "T1316C", "A1322G", "A1329G", "G1334A", "A1338G", "C1345T", "A1347T", "A1350G", "G1352A", "C1358T", "A1361G", "T1364C", "C1370A", "T1394C", "C1413T", "A1421G", "T1431A", "C1437T", "G1439A", "A1461T", "A1476C", "C1484T", "A1491G", "G1506T", "G1511T", "T1517C", "T1523G", "T1529C", "G1568A", "A1583T", "T1604C", "A1614C", "G1616T", "A1628T", "T1640C", "A1649G", "T1655C", "A1658T", "C1661T", "T1664C", "T1673A", "G1691A", "T1694A", "A1697T", "A1730G", "A1736G", "A1739G", "A1769T", "C1770T", "T1772A", "A1778C", "C1826A", "A1829C", "G1832A", "T1856C", "A1883G", "G1886A", "C1893T", "A1901T", "T1910C", "C1913T", "A1928C", "A1931T", "A1940G", "T1943A", "C1944T", "T1955C", "G1959A", "G1964T", "T1965C", "A1967G", "A1986C", "A1988C", "A1991T", "A2003G", "G2006T", "C2015T", "C2016T", "T2037C", "T2051C", "A2054C", "A2057G", "A2069G", "C2070A", "G2072A", "T2087C", "A2090G", "T2094C", "A2096T", "A2102T", "A2105C", "T2111C", "T2114G", "T2126A", "G2160A", "T2165G", "T2177C", "G2186A", "T2204A", "T2210C", "T2228A", "T2240C", "A2243G", "C2273T", "A2274G", "A2288G", "G2297A", "G2298A", "A2299C", "T2308A", "A2309G", "T2327C", "T2328C", "A2330T", "C2339T", "A2351T", "A2360G", "A2361G", "A2362C", "A2369G", "A2372T", "A2373G", "A2378G", "C2388T", "A2390G", "G2411A", "A2414G", "A2420C", "G2426A", "T2429C", "A2435G", "T2468A", "C2474A", "A2483G", "C2514A", "C2516A", "C2522A", "C2526T", "A2528G", "A2534G", "T2543C", "G2549A", "T2570G", "T2573A", "G2579A", "T2582C", "A2598C", "A2615C", "C2624T", "T2633C", "C2658A", "A2665G", "A2669C", "T2675C", "T2681A", "T2684G", "A2690G", "A2705G", "A2708T", "A2717T", "C2726T", "C2733T", "A2735G", "T2747A", "G2753A", "G2756A", "T2768C", "A2780T", "G2789A", "T2792A", "T2816C", "T2819G", "T2825C", "A2827G", "A2852G", "A2855T", "C2865T", "T2867A", "T2894C", "T2903C", "A2912G", "C2918A", "A2919C", "A2920G", "C2928A", "T2945C", "C2987T", "A2997C", "A2999G", "A3011T", "A3014C", "G3023A", "C3024T", "T3026A", "C3035T", "A3044G", "T3053A", "A3065T", "G3080A", "T3098A", "A3104G", "A3107G", "C3110T", "T3122C", "T3155C", "G3177A", "T3182A", "T3188C", "A3194G", "C3203T", "T3218C", "A3233T", "T3248A", "T3251C", "A3257T", "A3284G", "A3293T", "A3299G", "T3308C", "C3320T", "A3338T", "T3344C", "T3350C", "A3362G", "T3365A", "T3374C", "C3377A", "T3389C", "A3407G", "T3422C", "T3461C", "T3467C", "T3470C", "C3471T", "A3485T", "T3488C", "A3491G", "T3503C", "A3506G", "A3539T", "T3557A", "T3572C", "T3578A", "A3590T", "T3593C", "T3596C", "A3602T", "A3614T", "C3623T", "T3624C", "T3650C", "C3651T", "T3668C", "A3671G", "A3677T", "A3692T", "C3701T", "G3707A", "A3719T", "A3723G", "A3725T", "A3728T", "T3729C", "A3743G", "T3746G", "G3749A", "G3752A", "G3755A", "A3764G", "A3791T", "G3792T", "A3809G", "A3821G", "A3824T", "A3830C", "C3831T", "C3845T", "G3863A", "A3866T", "C3869A", "T3878C", "G3884T", "G3896A", "C3917T", "C3932T", "T3938G", "A3939C", "T3947G", "T3950C", "T3965G", "C3977T", "G3980A", "A3989G", "A4001T", "T4017C", "G4025A", "T4034C", "A4043G", "C4046T", "T4064A", "T4067C", "G4071T", "T4097C", "T4103A", "T4127C", "A4130G", "C4145T", "A4162C", "A4181G", "A4190C", "T4205C", "T4208G", "C4211T", "T4217C", "A4220T", "T4229A", "A4238G", "C4248T", "T4250A", "T4259C", "C4290A", "G4292A", "T4325G", "A4331T", "T4337A", "T4346C", "A4353T", "T4355A", "A4364G", "C4376T", "T4382C", "A4390G", "A4409T", "A4442T", "A4448G", "A4451T", "C4463T", "A4481G", "A4494G", "T4496G", "C4508T", "A4520G", "G4529A", "C4531T", "A4532T", "T4535A", "G4556C", "A4613T", "C4619T", "T4628C", "T4640C", "T4641C", "A4643T", "A4658G", "A4661T", "T4676C", "T4703A", "C4712T", "A4721T", "G4733A", "G4739T", "G4741A", "A4766G", "A4775G", "C4778T", "A4781G", "A4790T", "C4793T", "T4796C", "T4799C", "T4802C", "G4811A", "A4820C", "C4835T", "A4836C", "G4838A", "G4856A", "A4859G", "A4865G", "C4883T", "C4901T", "A4904G", "T4913C", "T4916A", "C4926A", "G4931T", "T4955C", "G4970A", "A4979G", "A4988C", "A4994G", "G4997A", "A5009G", "A5015C", "G5028A", "T5054A", "T5066C", "T5069A", "A5078G", "T5081C", "T5084A", "C5087G", "A5096G", "T5105C", "T5106C", "T5111C", "G5121A", "T5123C", "A5144C", "A5147G", "T5153C", "A5156C", "T5159C", "A5174T", "A5189C", "A5210C", "C5222T", "C5223T", "T5231C", "T5234C", "A5292G", "A5297G", "T5306G", "G5330A", "G5354A", "G5357A", "A5360G", "G5361A", "T5363A", "G5393A", "A5408G", "A5414G", "G5417T", "T5418C", "A5429T", "T5435A", "T5438C", "G5444A", "G5460A", "T5462A", "A5465T", "T5471C", "A5489G", "C5493A", "A5501C", "G5507A", "A5513G", "G5516A", "C5517A", "T5519A", "T5522A", "T5525C", "C5540A", "T5543C", "A5549G", "T5552A", "T5558C", "C5561T", "T5564A", "T5601C", "A5603T", "A5606T", "A5609T", "T5618C", "A5624T", "T5625C", "G5627T", "A5645G", "G5654A", "C5694T", "T5702C", "A5708T", "A5711T", "T5720A", "C5724T", "C5726G", "A5729G", "T5748C", "A5750G", "T5756A", "A5762C", "T5768G", "T5774C", "A5780T", "T5792G", "G5795A", "T5798C", "A5804T", "T5813C", "G5816A", "C5819T", "C5832T", "A5834G", "C5861T", "G5876T", "T5897A", "A5906T", "A5909T", "T5921A", "T5924C", "A5926G", "G5930A", "T5948C", "T5960C", "A5967G", "A5990T", "C5997T", "G5999A", "T6008A", "A6017G", "G6020A", "C6027T", "T6029A", "G6035A", "T6038C", "T6050C", "T6065C", "T6068C", "T6084C", "A6086T", "A6095T", "T6101A", "A6102G", "T6104A", "T6110A", "A6115G", "G6116A", "G6133A", "A6134G", "T6146A", "G6149C", "C6150A", "G6152A", "A6155G", "A6158G", "T6170C", "G6176A", "C6179A", "C6191T", "C6219T", "A6239T", "C6244T", "A6245G", "C6254T", "A6260T", "C6262T", "A6263C", "A6269T", "C6273T", "A6275G", "T6281C", "T6284G", "T6290C", "T6311A", "A6317G", "T6326G", "A6330G", "C6347T", "A6349G", "T6354C", "A6356T", "A6371G", "A6372G", "T6380C", "A6383G", "A6389G", "T6401A", "T6419C", "T6422C", "C6428T", "T6431A", "G6437A", "C6450T", "C6452A", "G6455A", "C6456A", "A6459C", "G6464A", "T6467C", "T6479A", "C6485A", "A6488T", "T6498-", "G6500C", "T6504G", "T6507G", "A6513T", "T6514G", "A6521T", "G6526A", "A6528G", "A6530G", "T6531A", "T6532C", "G6536T"], "RdRp": ["I7V", "Q9K", "I87L", "M126L", "L132I", "I154L", "S157G", "V187A", "Y193F", "T201A", "K239N", "Q245G", "G273E", "H274C", "Q276H", "L279K", "Q280K", "Y339F", "V350I", "D395E", "L398I", "A409E", "K419T", "I432V", "T435A", "G438C", "M439V", "S466T", "I476L", "S486G", "A491S", "S541P", "E642K", "H693Q", "V709I", "I747V", "E755T", "E772D", "T775M", "N776A", "H875N", "K877R", "K931R", "V950I", "K962R", "G1048S", "V1052I", "I1230V", "A1253S", "I1264V", "H1356Q", "N1376T", "N1452S", "I1487V", "A1499V", "E1530D", "R1569K", "V1665I", "V1696I", "K1750R", "I1753V", "V1809I", "P1828T", "I1850M", "I1867V", "N1919K", "R1939N", "K1964R", "I1978V", "D2022E", "K2027R", "R2033K", "T2070M", "T2076V", "T2099A", "K2105R", "T2113A"]}, "labels": {"aa": "RdRp: I7V, Q9K, I87L, M126L, L132I, I154L, S157G, V187A, Y193F, T201A, K239N, Q245G, G273E, H274C, Q276H, L279K, Q280K, Y339F, V350I, D395E, L398I, A409E, K419T, I432V, T435A, G438C, M439V, S466T, I476L, S486G, A491S, S541P, E642K, H693Q, V709I, I747V, E755T, E772D, T775M, N776A, H875N, K877R, K931R, V950I, K962R, G1048S, V1052I, I1230V, A1253S, I1264V, H1356Q, N1376T, N1452S, I1487V, A1499V, E1530D, R1569K, V1665I, V1696I, K1750R, I1753V, V1809I, P1828T, I1850M, I1867V, N1919K, R1939N, K1964R, I1978V, D2022E, K2027R, R2033K, T2070M, T2076V, T2099A, K2105R, T2113A"}}}, {"name": "NODE_0000002", "node_attrs": {"div": 0.0643555, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T91C", "A104G", "C137A", "C155T", "A218T", "A254T", "C344A", "T447C", "C480A", "A494G", "T503C", "A558C", "G560A", "A575T", "A599G", "G623A", "C692T", "A740T", "T762C", "A764C", "A818G", "A860G", "C891A", "G917A", "A944C", "A947T", "A950T", "A1022T", "A1034T", "C1046T", "C1064T", "A1090T", "C1176T", "T1178A", "T1247G", "A1262T", "A1275G", "G1344A", "A1347G", "T1494C", "G1496T", "C1518A", "C1571T", "C1646T", "A1650G", "A1652T", "C1656T", "T1715G", "T1805A", "C1817A", "C1862T", "A1895T", "T1916A", "T1922C", "G1985A", "T2087G", "A2120T", "A2123T", "T2135G", "T2138G", "T2204C", "T2229C", "G2231T", "A2307G", "T2308C", "T2375G", "T2453A", "A2498T", "A2561T", "G2585A", "A2813T", "T2879A", "A2882G", "A2885G", "G2930T", "A3146T", "A3173T", "A3189G", "A3194T", "T3347A", "T3428C", "G3458A", "G3509T", "G3530T", "A3545T", "G3548A", "G3554A", "A3605G", "A3659T", "T3708C", "A3710T", "C3717T", "A3807C", "A3821C", "G3825A", "T3827A", "A3890T", "A3959T", "G4199A", "A4238T", "T4328A", "T4343C", "A4353G", "C4358T", "A4400G", "T4403C", "A4517G", "C4601T", "T4616C", "T4625A", "T4628A", "A4631T", "A4643G", "A4668C", "A4709G", "C4722T", "A4740C", "T4757A", "C4847A", "A4859C", "C4886T", "A4922T", "T4925A", "C4929T", "A5006G", "A5051G", "C5094T", "T5111A", "C5208T", "A5312T", "C5325T", "T5348A", "T5405A", "A5495G", "G5588A", "G5634A", "A5648T", "G5663T", "C5705T", "A5714T", "C5825T", "T5852A", "C5868T", "T5870A", "A5915T", "A6207G", "C6215A", "A6221T", "G6261A", "C6267T", "A6314T", "A6386G", "C6413T", "T6443A", "G6464T", "C6516T", "G6522T", "T6555G"], "RdRp": ["V19A", "P149T", "Q245H", "E277V", "Q280E", "Y352F", "D404E", "I414V", "V437T", "I539V", "K758A", "D780M", "V950M", "K1258Q", "S1346A", "V1430I", "I1776V", "R1939K", "V2023I", "I2058V"]}, "labels": {"aa": "RdRp: V19A, P149T, Q245H, E277V, Q280E, Y352F, D404E, I414V, V437T, I539V, K758A, D780M, V950M, K1258Q, S1346A, V1430I, I1776V, R1939K, V2023I, I2058V"}}, "children": [{"name": "NODE_0000003", "node_attrs": {"div": 0.131071, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G62A", "A65G", "T83A", "C117T", "T122C", "G158A", "C209T", "T218C", "A243G", "T278C", "T296C", "T398C", "A399C", "A401T", "A413G", "G416A", "C428T", "A455G", "A456G", "A461G", "A464T", "T473C", "T488A", "A533T", "A542T", "T545A", "A548G", "A618C", "A629G", "T632A", "A695T", "A731C", "C758T", "A809C", "C821A", "A824T", "G828A", "T830C", "A832G", "T833C", "T836C", "G864A", "G872A", "A873G", "A877G", "A887G", "G920A", "A923C", "G927A", "T941C", "T989C", "A1019T", "T1038C", "G1055A", "T1058C", "A1070T", "A1083G", "T1088C", "T1091C", "G1106A", "T1124A", "G1130C", "A1133G", "A1142T", "T1152C", "T1181A", "A1187G", "T1211C", "A1229T", "C1250T", "T1259A", "C1317T", "A1319G", "A1329G", "C1353G", "A1376G", "G1385A", "C1389T", "T1400C", "T1406C", "C1413T", "A1430G", "T1433A", "G1478A", "T1499C", "G1511T", "A1526G", "A1538G", "T1550C", "G1556T", "A1562G", "A1580T", "A1592G", "A1634G", "T1647C", "A1658T", "A1679T", "G1691T", "T1694G", "A1709T", "T1724A", "T1737C", "A1739C", "T1745A", "A1763G", "T1772C", "A1784T", "A1803G", "T1811C", "C1826A", "T1839C", "A1841T", "C1847T", "T1856C", "C1914T", "A1916G", "G1946T", "A1973G", "C1979T", "A2003T", "A2012C", "C2015T", "C2016T", "T2021C", "G2033A", "G2039A", "A2057G", "G2150T", "A2178C", "A2192T", "A2216G", "T2241C", "A2243T", "A2306G", "A2309T", "T2324A", "G2333A", "C2339T", "T2342C", "T2359C", "A2362G", "A2366G", "A2390T", "G2402A", "A2420T", "A2435G", "T2438C", "G2444A", "A2447T", "A2456G", "C2480T", "T2486C", "C2492T", "T2507C", "A2513C", "C2522A", "T2540A", "T2543A", "G2568T", "T2588A", "T2636A", "A2657G", "T2660C", "A2672G", "A2676C", "A2708C", "C2733T", "A2738C", "G2744A", "G2789A", "A2801G", "A2804G", "A2810C", "A2828G", "A2855T", "A2870G", "A2876T", "A2900C", "C2918T", "T2930C", "A2936G", "T2951A", "A2963G", "A2972T", "G2975T", "T2981C", "A2997C", "T3002C", "C3032T", "A3033G", "T3056A", "G3101A", "T3105C", "A3107C", "T3119A", "T3137C", "T3149G", "A3164T", "T3176A", "T3179A", "T3188A", "A3200G", "G3215A", "T3219C", "A3221T", "A3236T", "A3239G", "T3248A", "A3252G", "G3263A", "A3296G", "A3302T", "A3314G", "A3338C", "T3353A", "T3365A", "A3398T", "A3416T", "A3419T", "A3440T", "A3473G", "C3482T", "C3483T", "A3506G", "A3512T", "G3518A", "A3521G", "T3551C", "T3557A", "T3596G", "T3632C", "A3635T", "T3650C", "A3653G", "A3677T", "G3680A", "T3704A", "A3719G", "A3728C", "A3737T", "T3788A", "T3797C", "G3803A", "T3839A", "T3848C", "A3914T", "C3920T", "A3925T", "T3938C", "T3950C", "T3965C", "T3966C", "A3968G", "T4040C", "C4046T", "G4058A", "T4067A", "A4070G", "A4073T", "T4085C", "T4103C", "A4115T", "T4136A", "T4139A", "C4145T", "T4151C", "A4160G", "T4172C", "A4190G", "T4217A", "G4235A", "C4251A", "T4259C", "G4274A", "T4355A", "T4388C", "T4391C", "A4394C", "C4395T", "A4442G", "A4448G", "A4451G", "A4452C", "G4454A", "G4460A", "A4466G", "A4472T", "T4490A", "A4493G", "C4514T", "T4547C", "G4583T", "T4607C", "T4649A", "T4667C", "A4679G", "T4688C", "A4708G", "A4721T", "G4742A", "A4760G", "T4772A", "G4787A", "C4826A", "A4832C", "C4835A", "T4841G", "G4862A", "A4877G", "G4884A", "A4907G", "A4937T", "G4940A", "A4941G", "G4958A", "T4967A", "T4976A", "A4978G", "A4988T", "G5036T", "G5042A", "A5045G", "T5057C", "A5072G", "C5091T", "A5135G", "C5142A", "A5145C", "A5147G", "A5150T", "T5159A", "A5165G", "A5174T", "T5219A", "T5237C", "T5246C", "T5273C", "G5284A", "A5303T", "T5306C", "A5324G", "A5328C", "G5330T", "C5334T", "A5348G", "A5351T", "A5366T", "C5396A", "T5399C", "A5402G", "G5453A", "T5471A", "A5474C", "C5505A", "A5510C", "T5522C", "C5534T", "A5542C", "T5582C", "C5600T", "A5606T", "A5645G", "A5657T", "A5660T", "G5687A", "T5702A", "A5708G", "T5717C", "G5723A", "C5726T", "T5727C", "A5732G", "C5735T", "A5759C", "T5765C", "T5798C", "T5807A", "T5840A", "C5861T", "A5882G", "T5984C", "A5996C", "G6020A", "A6041T", "T6053C", "A6062G", "T6077A", "T6080C", "T6110A", "A6113G", "G6116A", "T6128A", "A6131T", "G6143A", "G6149A", "G6152T", "T6173A", "T6180C", "A6194G", "T6197A", "C6203T", "T6209A", "T6227A", "C6233T", "A6242G", "G6256A", "C6257T", "A6272C", "T6290C", "A6293G", "T6326A", "G6335T", "A6350G", "A6360G", "A6368T", "A6371G", "A6383G", "A6389G", "C6395T", "A6398G", "A6404G", "C6411T", "T6413A", "T6416A", "G6437A", "A6458T", "A6470C", "G6496A", "A6497G", "A6502T", "T6523C", "T6533-", "G6552A", "C6560T"], "RdRp": ["I70V", "I141V", "A265S", "N266S", "V277M", "K281R", "V298I", "I432V", "P440A", "T590A", "N776S", "M780K", "A845S", "N1000D", "I1073V", "E1089D", "Y1297F", "S1440A", "K1558R", "V1617I", "I1636V", "D1644E", "K1648R", "N1836T", "I1850M", "S2074N", "I2109V"]}, "labels": {"aa": "RdRp: I70V, I141V, A265S, N266S, V277M, K281R, V298I, I432V, P440A, T590A, N776S, M780K, A845S, N1000D, I1073V, E1089D, Y1297F, S1440A, K1558R, V1617I, I1636V, D1644E, K1648R, N1836T, I1850M, S2074N, I2109V"}}, "children": [{"name": "NODE_0000004", "node_attrs": {"div": 0.172261, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G104A", "C114T", "A140G", "T173C", "T236G", "C272A", "A302G", "C332T", "C390A", "G467A", "G485A", "G494A", "C503T", "G512A", "A530T", "T533C", "T554A", "C584T", "C596T", "G617A", "A620T", "C653T", "T680C", "C699T", "T710C", "A737G", "G746A", "T749C", "C776T", "C836A", "G860A", "T881C", "C944A", "G968A", "T974C", "C990T", "A1010G", "T1067G", "T1100C", "A1103G", "A1214G", "A1226G", "A1283G", "G1301A", "A1310G", "G1334T", "G1397A", "C1454T", "T1604C", "T1607C", "A1628G", "A1643T", "T1703C", "T1728C", "T1733C", "T1740C", "G1742A", "A1748G", "T1784C", "T1799C", "A1817G", "A1842C", "T1866C", "C1937T", "T1949C", "T1952A", "C1962T", "C1994T", "G1997A", "T2024A", "A2102G", "T2132C", "T2150C", "T2177C", "G2180C", "T2189C", "T2192C", "A2222G", "T2237C", "T2243C", "T2265C", "C2273T", "G2297A", "A2357G", "A2399G", "A2414G", "A2510G", "A2555G", "A2597C", "T2639C", "C2663T", "T2675A", "T2684A", "T2693C", "T2720C", "T2751C", "T2835C", "A3008G", "T3029A", "T3071C", "T3089C", "A3104G", "A3134T", "T3164C", "T3191A", "T3224C", "A3254T", "A3257C", "T3258C", "A3260G", "G3281A", "G3287A", "T3290C", "T3344C", "A3353G", "T3357C", "T3383C", "C3428T", "T3530C", "C3563T", "A3581T", "T3611G", "C3623T", "C3651T", "A3686G", "T3689C", "C3690T", "G3755A", "C3821T", "A3824T", "T3854C", "A3866G", "C3869T", "T3878C", "C3917T", "T3923C", "C3932T", "T3956C", "G4016A", "G4025A", "C4031T", "A4082G", "A4094G", "T4106C", "T4110C", "T4133C", "A4139G", "T4154C", "T4173C", "A4175C", "C4176T", "T4178A", "A4247G", "A4253G", "A4271G", "A4286G", "A4298G", "C4310A", "T4349C", "A4370G", "A4433G", "A4454T", "C4463A", "T4484C", "T4496A", "A4505G", "A4520G", "A4538G", "T4541C", "C4565T", "C4616T", "C4619T", "A4658G", "A4673G", "C4712A", "A4724G", "T4751G", "A4772G", "G4823A", "G4844A", "A4874T", "C4883T", "A4898T", "C4901A", "T4922C", "A4925G", "A4928C", "A4976G", "C5039T", "A5040C", "T5060C", "A5096G", "A5111G", "T5123A", "A5162G", "T5174C", "A5186G", "C5192T", "G5207A", "A5219G", "C5222T", "C5295T", "C5331T", "T5358C", "G5417A", "A5420G", "T5438A", "G5480A", "G5516A", "T5591C", "A5678G", "C5694T", "A5744G", "A5834G", "T5843C", "C5867T", "T5879C", "T5975C", "G5978A", "T6026C", "A6074G", "A6077G", "A6086G", "A6137G", "T6138C", "A6155G", "T6164C", "A6182G", "T6185C", "C6191T", "G6212A", "T6218C", "T6221C", "T6251C", "T6314C", "G6344A", "C6347T", "G6365A", "A6372G", "G6386A", "A6413G", "T6431C", "T6434C", "G6461A", "G6499A", "T6507C", "G6549T", "A6552C", "A6554G", "C6557A", "T6558A", "T6560A", "T6561G"], "RdRp": ["S265T", "E1033D", "I1430V", "M1981I", "T2113A"]}, "labels": {"aa": "RdRp: S265T, E1033D, I1430V, M1981I, T2113A"}}, "children": [{"name": "PP_006W27K|ER19-SP1693|Argentina/2019-XX-XX", "node_attrs": {"div": 0.196718, "strain": {"value": "PP_006W27K|ER19-SP1693|Argentina/2019-XX-XX"}, "accession": "PP_006W27K", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2019-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP151172.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151172.1"}, "PPX_accession": {"value": "PP_006W27K.1", "url": "https://pathoplexus.org/seq/PP_006W27K.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Entre Rios"}, "region": {"value": "South America"}, "length": {"value": 6563}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["G6T", "T7A", "A62G", "C75T", "G119A", "T185C", "G266A", "A276T", "C308T", "A416G", "C518T", "T530C", "G581A", "G635A", "G644A", "G698A", "G752A", "C764T", "G779A", "T800C", "C809T", "T824C", "C833T", "G878A", "G887A", "A893G", "C941T", "A1028G", "T1076C", "C1121T", "T1196C", "T1202C", "A1238G", "G1319A", "A1344G", "A1385G", "G1439T", "T1529C", "G1577A", "C1604A", "T1631C", "T1640C", "C1647T", "C1661T", "T1682C", "T1709C", "A1769G", "G1916A", "T1943C", "T1979C", "T1982C", "T2016C", "A2018C", "A2036G", "T2063C", "A2069G", "G2072A", "A2105G", "G2138A", "T2162C", "A2171G", "A2201G", "G2225A", "G2270A", "A2291G", "T2294C", "T2328C", "A2360T", "T2363C", "C2393T", "A2408G", "A2441G", "G2456A", "T2480C", "C2486T", "A2495G", "C2526T", "A2546G", "G2579A", "G2651A", "A2717G", "A2786G", "G2846A", "A2927G", "A2951C", "G2963A", "G3038A", "C3062T", "C3110T", "C3137T", "A3191G", "C3203T", "T3221C", "T3254C", "C3320T", "T3323C", "C3338T", "A3347T", "C3377T", "A3380G", "T3390C", "T3497G", "A3548G", "T3635G", "G3653A", "A3692G", "A3725T", "T3737C", "A3812G", "T3914C", "T3920C", "T3935C", "T3944C", "C3950T", "A4001G", "A4067G", "G4160A", "C4172T", "A4199G", "A4235G", "C4259T", "T4295C", "T4346C", "C4391T", "A4421G", "A4481G", "C4508T", "T4586C", "C4667T", "T4703C", "A4754G", "G4760A", "T4796C", "T5018C", "C5057T", "C5141T", "A5159G", "T5183C", "C5223T", "A5225G", "G5261A", "C5423T", "T5519C", "C5582T", "A5597G", "A5624G", "T5675C", "A5696G", "C5727T", "T5781C", "C5798T", "T5855C", "G6035A", "C6080T", "C6200T", "G6225A", "A6227G", "A6230G", "A6275G", "T6354C", "T6453C", "T6467C"], "RdRp": ["N81Y", "T437A", "A2064T"]}, "labels": {"aa": "RdRp: N81Y, T437A, A2064T"}}}, {"name": "PP_006W1V9|15631_L|Argentina|1998|Argentina/1998-XX-XX", "node_attrs": {"div": 0.190546, "strain": {"value": "PP_006W1V9|15631_L|Argentina|1998|Argentina/1998-XX-XX"}, "accession": "PP_006W1V9", "author": {"author": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J.", "value": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J."}, "date": {"value": "1998-XX-XX"}, "abbr_authors": {"value": "Shedroff et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP058737.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP058737.1"}, "PPX_accession": {"value": "PP_006W1V9.1", "url": "https://pathoplexus.org/seq/PP_006W1V9.1"}, "institution": {"value": "Centers for Disease Control and Prevention, Viral Special Pathogens Branch"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-04-30"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6540}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["C191T", "A192G", "G243A", "A251G", "G343A", "C398T", "T458C", "T527C", "T557C", "A563G", "C605T", "G647A", "A677G", "T692G", "A751G", "T848C", "G875A", "T1025C", "T1037C", "T1059C", "C1123A", "C1130T", "A1139G", "T1157C", "A1163G", "G1187A", "T1220C", "G1247A", "T1295C", "C1400T", "T1460C", "T1590C", "C1610T", "T1646C", "C1670T", "A1808G", "G1814A", "A1940T", "T2075C", "A2093G", "T2168C", "T2210C", "A2267G", "A2330G", "A2528G", "T2603C", "A2612G", "C2624T", "G2657A", "G2828A", "G2870A", "T2894A", "A2951G", "T2978C", "T3236C", "T3237C", "T3266C", "T3302C", "T3339C", "A3413G", "A3485G", "T3489C", "A3515T", "A3533G", "A3584C", "A3671G", "T3695C", "G3749A", "C4040T", "T4064A", "C4085T", "A4130G", "T4214C", "G4292A", "T4445C", "C4547T", "T4703G", "G4733A", "A4736T", "G4739A", "G4841A", "G4853A", "C4922A", "A5138G", "A5189G", "T5231C", "A5294C", "C5306T", "T5372C", "G5393A", "C5399T", "C5522T", "T5601C", "G5783A", "C5819T", "C5832T", "A5906G", "T5963C", "A6161G", "T6170C", "C6180T", "A6197G", "G6242A", "T6248C", "C6254T", "C6273T", "G6375A", "T6449C", "C6452T"], "RdRp": ["I53V", "V70I", "G103E", "K239R", "P363Q", "V2114I"]}, "labels": {"aa": "RdRp: I53V, V70I, G103E, K239R, P363Q, V2114I"}}}]}, {"name": "NODE_0000005", "node_attrs": {"div": 0.17421, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G31A", "C75T", "A101G", "T113C", "T146C", "T147C", "C221T", "T230C", "A260G", "A299T", "C305T", "T311C", "C374T", "A411T", "A422G", "T477C", "A479G", "G509A", "C518T", "A530G", "A560T", "T591C", "A620G", "T626C", "T627C", "T654C", "T668C", "G674A", "C686T", "T695C", "T716C", "C761T", "T770A", "G779A", "A802G", "C812T", "G815A", "A827G", "A828T", "G842A", "G854A", "C861A", "T869C", "T950C", "T1022C", "G1073A", "A1085G", "T1097C", "C1109T", "T1112C", "A1178G", "C1190T", "G1239A", "T1256C", "A1268G", "G1274A", "T1349C", "C1370A", "T1394C", "A1412G", "A1415G", "T1418G", "A1421G", "G1439A", "T1469C", "C1475T", "T1511C", "A1520G", "T1523C", "T1566C", "A1601T", "G1616A", "C1661T", "T1688C", "A1712G", "T1820C", "C1823T", "A1850C", "C1859T", "A1883G", "C2100T", "A2144T", "G2159A", "T2174C", "A2258G", "T2264C", "G2270A", "A2303G", "C2308A", "T2315C", "T2348A", "A2357C", "A2381G", "G2387A", "T2432C", "T2439C", "A2459G", "C2474T", "A2483G", "C2526T", "T2573A", "T2633C", "A2648G", "G2699A", "T2711C", "A2741G", "T2747C", "A2759C", "A2765G", "T2774C", "T2819C", "G2861A", "A2897C", "T2903C", "A2933G", "T2945C", "T2954C", "T2957A", "C2987T", "T2993C", "C3035T", "A3068G", "T3098A", "T3125C", "G3269A", "A3275T", "G3341A", "A3392G", "T3398C", "T3419C", "T3443C", "A3449G", "T3470C", "T3488A", "T3503C", "A3536G", "T3552C", "T3572G", "T3615C", "G3626A", "T3638G", "T3656A", "A3665G", "T3668C", "T3684C", "A3698G", "A3704G", "A3731G", "T3753C", "T3818C", "C3831T", "T3836A", "A3839G", "C3845G", "C3864T", "T3881C", "G3884T", "A4037G", "T4046G", "T4061C", "C4163T", "T4169C", "C4211T", "T4238C", "T4250C", "G4323A", "T4325C", "A4328T", "C4343T", "A4361G", "A4373G", "C4383T", "G4385A", "C4403T", "A4500C", "C4508T", "G4517A", "T4535C", "G4643A", "A4649G", "A4670G", "G4682A", "T4694C", "C4778T", "G4811A", "A4865G", "A4892G", "G4931A", "T4943C", "G4970A", "G4997A", "T5054A", "T5063A", "T5066C", "A5078G", "C5087T", "C5141T", "G5198A", "T5234A", "A5249G", "T5270C", "T5303C", "A5315G", "T5321C", "G5333A", "T5363C", "T5369C", "T5372G", "A5406C", "T5459C", "T5462A", "A5489G", "G5495A", "A5501G", "A5504G", "A5549G", "T5552C", "G5627A", "T5642C", "A5700G", "A5780T", "C5786T", "T5864A", "A5870G", "T5966C", "T5972C", "C5997T", "A6017G", "T6023A", "T6041C", "T6050C", "T6101C", "A6173G", "T6188C", "A6269G", "T6281C", "T6284G", "A6305G", "T6335C", "A6348C", "T6380A", "A6443G", "T6491C", "G6556A"], "RdRp": ["M126L", "H245Q", "K256R", "Q276K", "V402I", "A758D", "I1889V", "K2105Q"]}, "labels": {"aa": "RdRp: M126L, H245Q, K256R, Q276K, V402I, A758D, I1889V, K2105Q"}}, "children": [{"name": "PP_006W1SF|BA18-LD1633|Argentina/2018-XX-XX", "node_attrs": {"div": 0.184281, "strain": {"value": "PP_006W1SF|BA18-LD1633|Argentina/2018-XX-XX"}, "accession": "PP_006W1SF", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2018-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP003837.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP003837.1"}, "PPX_accession": {"value": "PP_006W1SF.1", "url": "https://pathoplexus.org/seq/PP_006W1SF.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 6587}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["A92T", "C128T", "A158G", "T227C", "C245T", "C290T", "A770G", "C809A", "A872G", "C915T", "A920G", "G1040A", "C1123A", "T1160C", "T1172C", "G1298A", "G1445A", "A1535G", "G1568T", "T1655C", "T1751C", "T1874C", "A1967G", "T1981C", "A1988G", "C2004T", "T2060C", "A2714G", "G2804A", "T2867G", "T3194C", "T3207C", "T3758C", "T3782C", "A3928G", "T4382C", "A4499G", "A4715T", "C4740A", "A4754G", "T4769C", "A4833G", "A4847C", "G4856A", "A5009G", "T5243C", "C5246T", "A5318G", "G5327A", "A5432G", "C5540T", "T5550G", "T5714C", "G5783A", "T5813C", "C6179T", "A6230G", "C6254T", "T6359C", "A6380G", "G6497A", "A6552T", "G6555T", "A6556T"], "RdRp": ["P363Q", "F649S", "K1298R", "I1600V", "S1839A"]}, "labels": {"aa": "RdRp: P363Q, F649S, K1298R, I1600V, S1839A"}}}, {"name": "PP_006W1RH|BA18-RR1620|Argentina/2018-XX-XX", "node_attrs": {"div": 0.185272, "strain": {"value": "PP_006W1RH|BA18-RR1620|Argentina/2018-XX-XX"}, "accession": "PP_006W1RH", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2018-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP003836.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP003836.1"}, "PPX_accession": {"value": "PP_006W1RH.1", "url": "https://pathoplexus.org/seq/PP_006W1RH.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 6558}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["G71A", "A192G", "C332T", "G410A", "T572G", "T614C", "T719C", "G728A", "G788A", "G834A", "G1004A", "T1034A", "C1088T", "A1106G", "A1139G", "A1150G", "G1184A", "T1232C", "A1322G", "G1391A", "C1499T", "T1556C", "T1590C", "G1766A", "T1793C", "G1832A", "A1901G", "T1982C", "T2063C", "G2072A", "T2141C", "A2201G", "G2216A", "T2231C", "G2384A", "T2396C", "T2492C", "T2498C", "G2651A", "T3032C", "G3033A", "T3092C", "T3122C", "A3176G", "G3314A", "A3515T", "G3596A", "A3809G", "A3986T", "C4031T", "T4064C", "C4310T", "T4367C", "T4406C", "G4466A", "T4514C", "T4610C", "T4751C", "G4941A", "T5018C", "T5106C", "G5135A", "A5297G", "G5426A", "A5693G", "C5835T", "A5909G", "G5999A", "T6008C", "C6290T", "A6356G", "G6371A", "C6452T", "C6485T", "C6553A"], "RdRp": ["I53V", "V267I", "K372R", "D1000N", "V1636I"]}, "labels": {"aa": "RdRp: I53V, V267I, K372R, D1000N, V1636I"}}}]}]}, {"name": "NODE_0000006", "node_attrs": {"div": 0.0959423, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C114T", "A116G", "A194T", "T227A", "T236A", "T242C", "G263A", "C347T", "G386A", "G434A", "C487T", "A500T", "G635A", "T839C", "C845A", "A890G", "A900C", "C990T", "A1016G", "G1040A", "A1051T", "G1151A", "T1160A", "A1163T", "A1169G", "C1190A", "A1244T", "A1253C", "G1274A", "C1307T", "T1308C", "A1310T", "A1325T", "G1337A", "G1391T", "G1442A", "G1445A", "A1463T", "C1466T", "T1529C", "A1538T", "A1562T", "A1574C", "G1577A", "A1595G", "C1622T", "A1628T", "G1676A", "A1734C", "G1766A", "T1775A", "A1796G", "G1814A", "C1823T", "A1850G", "G1892A", "T1925A", "C1937G", "G1964A", "G2006A", "T2040C", "A2081T", "T2091C", "A2147T", "C2148T", "T2213C", "T2237A", "A2372G", "A2374T", "T2405A", "A2459T", "A2534T", "G2579T", "A2598C", "T2603C", "A2662G", "T2681A", "A2687G", "C2726A", "C2834A", "T2894A", "A2990G", "A2996G", "A3014T", "G3080A", "A3086G", "C3110T", "A3134G", "C3158T", "T3190C", "C3230T", "A3284G", "T3323C", "G3341A", "T3437A", "G3608A", "C3633T", "C3641T", "T3722C", "T3746A", "G3752A", "A3761G", "A3779T", "A3794C", "A3812G", "A3833T", "T3836G", "T3923A", "G3941A", "A4055G", "A4076G", "T4118C", "T4127A", "T4151A", "C4163T", "T4229A", "T4256C", "A4319G", "G4323A", "T4340C", "C4383T", "T4436C", "A4487G", "T4559A", "T4602C", "A4658T", "A4664T", "A4718T", "T4725C", "G4733A", "A4736T", "T4751A", "A4784T", "T4808A", "A4814T", "G4844A", "G4853A", "A4868T", "T4902C", "A4947C", "C4986T", "A5030T", "C5034A", "A5075T", "A5117G", "C5192T", "G5198A", "A5210G", "T5231A", "T5240C", "G5261A", "A5268G", "A5294T", "C5376A", "A5390G", "C5412T", "C5423T", "G5426A", "G5507T", "G5576A", "G5585T", "T5675C", "C5738T", "T5756A", "G5816A", "C5867T", "G5885A", "G5930A", "T5969A", "A6032G", "A6044G", "A6074T", "A6137T", "C6273T", "G6353A", "T6419C", "C6428T"], "RdRp": ["A151V", "Y339F", "N876S", "V1052A", "E1541D", "I1745V"]}, "labels": {"aa": "RdRp: A151V, Y339F, N876S, V1052A, E1541D, I1745V"}}, "children": [{"name": "PP_006W0VA|VARS/22-01|Brazil/2022-12-09", "node_attrs": {"div": 0.199204, "strain": {"value": "PP_006W0VA|VARS/22-01|Brazil/2022-12-09"}, "accession": "PP_006W0VA", "author": {"author": "Amgarten, D.; Dorlass, E.; dos Santos Soares, A. C.; Moreira Salles, A. P.; Takara, A.; da Silva Santos, A.; Oliveira Sartori, B. S.; Petroni, R. C.; Sallum Filho, C. F. C.; Hidal, J. T.; Camargo, L. F. A.; Doi, A.; Rebello Pinho, J. R.", "value": "Amgarten, D.; Dorlass, E.; dos Santos Soares, A. C.; Moreira Salles, A. P.; Takara, A.; da Silva Santos, A.; Oliveira Sartori, B. S.; Petroni, R. C.; Sallum Filho, C. F. C.; Hidal, J. T.; Camargo, L. F. A.; Doi, A.; Rebello Pinho, J. R."}, "date": {"value": "2022-12-09"}, "abbr_authors": {"value": "Amgarten et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "OQ092243.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OQ092243.1"}, "PPX_accession": {"value": "PP_006W0VA.1", "url": "https://pathoplexus.org/seq/PP_006W0VA.1"}, "institution": {"value": "Hospital Israelita Albert Einstein, Varsomics"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-01-18"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Brazil"}, "region": {"value": "South America"}, "length": {"value": 6538}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["A26G", "G27T", "G44A", "C47T", "G74A", "G77T", "A80T", "A110G", "G119T", "G125A", "C128T", "T146C", "A167G", "T179A", "C191T", "A212G", "C215T", "C221T", "T230C", "C245T", "T254C", "C272A", "T284C", "A294G", "A302G", "C308T", "A314G", "T320A", "T326C", "C348T", "C350A", "T359C", "T368C", "T371C", "C374T", "T380A", "A389T", "A392G", "C428T", "T431C", "G443A", "T457C", "A465C", "T476C", "T477C", "G485A", "T488A", "T491C", "A506T", "A521G", "A524T", "A542C", "T545A", "T554C", "T578A", "T608A", "T611C", "G617T", "A618C", "T626C", "T627C", "A634G", "A636G", "C637T", "A638T", "T654C", "A656T", "T668C", "T671C", "A689T", "T692A", "C699T", "A701G", "A714G", "G734A", "G744A", "G746T", "A751G", "T755A", "C764T", "G788A", "G797A", "A814G", "C821T", "A827G", "A831G", "A832C", "T836G", "G842T", "G843A", "G853A", "G875T", "A887G", "A893G", "G914A", "C915A", "A917T", "G920A", "C921T", "T941C", "T956A", "C986T", "G1004A", "T1007C", "A1028G", "T1046A", "T1049A", "G1055A", "G1061A", "T1082C", "A1102G", "A1103G", "G1115A", "C1121T", "C1122T", "T1124A", "G1130A", "T1157C", "A1160G", "G1166A", "A1175G", "G1184A", "A1188G", "G1208A", "G1217A", "A1223G", "A1226C", "G1247A", "A1283T", "C1317T", "T1328C", "T1331C", "T1343C", "G1367A", "A1376T", "T1379A", "T1391C", "T1400C", "C1413A", "A1415C", "A1421G", "T1433C", "A1436T", "G1439C", "C1475T", "T1481C", "G1490A", "C1493T", "A1502T", "G1506T", "A1535G", "G1556A", "A1565C", "G1568A", "A1592G", "T1598G", "T1607A", "G1616A", "C1619T", "T1628C", "A1634G", "T1647C", "A1675G", "C1678T", "A1695G", "G1715A", "T1733C", "T1745C", "T1746C", "A1748T", "A1769T", "T1772C", "A1778G", "T1781A", "A1808G", "T1820C", "A1841G", "C1859T", "T1863C", "C1865T", "T1866C", "T1869C", "A1880T", "T1895G", "A1901G", "C1914T", "C1923T", "C1944T", "T1952A", "T1958C", "C1962T", "T1965C", "A1973G", "C1979T", "C1994T", "T2000C", "C2004T", "T2024A", "A2036T", "T2048C", "T2060C", "G2066A", "A2069C", "T2075C", "A2093G", "T2094C", "A2096G", "G2135A", "A2144C", "G2150A", "A2156C", "G2159A", "A2171G", "T2184C", "T2189A", "A2198C", "C2214T", "G2225A", "T2228G", "T2241C", "A2243C", "T2246G", "T2264C", "A2267G", "C2273T", "A2291G", "A2299C", "A2300C", "T2318G", "T2324C", "T2328C", "T2348A", "A2351G", "G2375A", "G2384A", "C2393T", "A2405G", "G2411A", "A2423G", "A2441G", "A2447T", "T2459C", "G2462A", "T2468C", "T2471C", "A2495G", "A2513C", "C2516T", "C2525T", "T2534C", "A2544G", "A2546C", "T2565C", "T2579C", "T2588A", "A2606G", "A2612G", "A2618G", "A2621T", "A2669T", "A2678G", "A2717G", "T2747A", "A2750G", "A2822G", "G2831A", "A2852T", "A2870G", "G2882T", "A2888T", "A2897C", "A2900T", "T2909C", "C2915G", "A2927G", "T2934C", "A2972T", "A2984G", "C2987A", "T3002C", "A3008G", "G3023T", "C3024T", "T3026G", "C3035T", "G3038A", "T3039C", "A3044G", "C3062T", "T3098C", "A3099C", "A3104G", "T3105C", "T3125C", "G3152C", "T3179C", "A3200T", "C3203T", "A3209G", "A3212G", "G3215T", "T3219C", "T3237C", "T3241A", "T3251A", "A3257T", "T3258C", "A3260C", "T3261C", "G3269A", "A3272G", "A3275G", "T3285C", "T3311C", "C3320T", "T3326C", "T3329A", "T3357C", "A3359G", "A3368G", "C3377A", "T3390C", "A3392C", "A3413G", "A3440T", "T3443C", "T3470C", "T3476C", "C3482T", "A3485T", "T3489C", "T3500C", "A3515T", "T3557C", "T3566C", "A3599G", "A3602T", "T3606C", "C3623T", "A3671G", "T3681G", "T3689C", "C3690T", "T3695A", "A3713T", "A3728G", "T3729C", "A3731T", "A3764T", "T3782C", "G3803A", "A3809G", "C3845A", "T3848C", "G3863A", "C3869T", "A3875G", "T3881C", "G3884T", "C3917T", "A3939C", "T3956C", "G3957A", "T3966C", "A3968T", "G3980A", "A4001G", "G4007A", "T4017C", "A4019T", "G4025A", "T4028C", "T4067C", "A4082G", "T4085C", "T4109C", "A4115G", "C4125A", "G4126A", "T4133C", "T4136A", "T4139A", "T4154C", "A4166G", "A4181T", "A4190G", "A4193G", "T4242C", "A4268G", "T4277C", "C4290A", "A4313G", "T4325A", "A4328G", "T4349C", "C4354T", "A4370G", "C4376T", "T4388C", "T4412C", "A4433G", "A4452C", "G4454A", "T4457C", "C4463A", "A4475G", "A4481G", "T4490G", "G4502A", "G4523A", "T4535C", "A4544C", "A4562C", "C4565T", "A4574G", "G4583T", "A4592C", "A4628C", "C4629T", "T4631G", "A4637T", "T4640C", "A4661G", "A4673G", "T4688A", "T4691C", "T4697A", "T4700G", "T4703C", "G4742A", "A4751G", "A4760T", "T4784C", "C4793T", "T4796C", "T4802C", "T4814C", "G4823A", "C4826T", "A4829G", "C4835T", "A4842C", "A4850G", "C4859T", "A4874T", "A4877G", "A4919G", "T4967C", "G4970A", "A4978G", "A4982G", "A4994G", "T4995C", "T5018C", "C5043A", "A5048G", "T5066C", "T5081C", "C5091T", "T5106C", "G5129A", "A5144T", "A5150T", "A5156C", "T5159C", "T5204A", "A5225C", "T5234C", "A5249G", "T5258A", "A5259C", "T5270G", "G5284A", "A5285G", "T5291C", "T5294C", "A5303T", "T5312C", "A5324C", "G5333T", "A5351T", "T5381C", "G5393A", "C5411T", "G5433T", "T5438A", "G5444A", "G5453A", "T5462C", "A5465C", "T5468C", "A5474G", "A5501T", "T5502C", "T5507C", "A5510G", "T5519A", "C5540T", "T5546C", "T5558A", "T5564A", "A5573T", "T5585C", "C5600T", "C5604T", "A5609C", "T5615A", "A5624G", "T5633C", "A5660G", "T5663A", "A5677G", "A5678G", "A5681G", "A5684G", "A5696T", "T5718A", "T5720A", "G5723C", "C5724T", "C5726A", "A5744G", "T5747C", "A5750G", "A5759T", "T5774A", "T5777C", "G5783A", "C5786A", "G5831A", "C5835T", "A5846T", "T5858C", "T5864C", "T5879C", "A5894G", "C5903T", "A5909T", "T5915C", "T5921A", "A5942G", "T5960A", "T5975C", "T6011C", "T6038C", "T6047C", "T6053C", "T6065A", "T6084C", "A6095T", "A6107G", "A6115G", "T6125G", "T6128C", "A6131T", "A6134G", "G6143A", "T6170G", "T6173A", "T6185G", "C6191T", "T6197C", "C6233T", "T6251C", "C6254T", "G6256A", "A6266C", "C6276T", "A6293C", "T6311A", "A6317G", "T6320C", "A6329G", "G6335C", "G6344A", "C6347T", "T6361C", "T6380A", "G6382A", "A6404G", "T6410C", "G6425A", "T6431A", "A6458T", "C6485T", "C6487A", "A6488G", "T6498A", "G6499C", "T6505C", "A6506T", "A6513G", "A6519C", "T6529A", "A6530T", "T6531G", "A6554G", "C6557T", "T6558C", "A6559G", "T6561A"], "RdRp": ["I25M", "I87V", "M126I", "I141T", "K200R", "T201V", "I227V", "E237N", "K239R", "K260R", "N266A", "Q269H", "A270T", "G273E", "E280N", "L294I", "V350I", "K356R", "P363S", "I385V", "L460I", "A491S", "K547R", "A548V", "I554V", "F610L", "E755A", "T775I", "M780I", "T837A", "K1039N", "F1069Y", "S1216A", "V1308I", "R1364K", "S1440V", "D1555E", "K1648R", "A1800S", "K1881R", "S1895T", "D1975E", "K2027R", "S2074N", "I2109T", "R2116K", "T2151K"]}, "labels": {"aa": "RdRp: I25M, I87V, M126I, I141T, K200R, T201V, I227V, E237N, K239R, K260R, N266A, Q269H, A270T, G273E, E280N, L294I, V350I, K356R, P363S, I385V, L460I, A491S, K547R, A548V, I554V, F610L, E755A, T775I, M780I, T837A, K1039N, F1069Y, S1216A, V1308I, R1364K, S1440V, D1555E, K1648R, A1800S, K1881R, S1895T, D1975E, K2027R, S2074N, I2109T, R2116K, T2151K"}}}, {"name": "NODE_0000007", "node_attrs": {"div": 0.200019, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A65G", "T83A", "A86G", "A98G", "A137G", "G149A", "G158A", "A164C", "T185C", "G188A", "T203A", "T230G", "A233C", "A260G", "C272T", "T281C", "T284A", "G293A", "C305T", "A312C", "T320C", "A335G", "A344G", "A362T", "A399C", "A404G", "G407A", "A413G", "T452C", "G462A", "T473A", "A492C", "A497T", "T500C", "G509A", "G512A", "T539A", "T554A", "A560T", "T569C", "T578C", "G581A", "T591C", "A593T", "C605T", "G644A", "C653A", "A662T", "G674A", "A677G", "G728A", "A737G", "T740C", "G752A", "C758T", "C761T", "C776T", "G779A", "T786C", "T800C", "A803G", "A827C", "G828A", "T830A", "T870A", "A873G", "T881C", "G896A", "T899C", "A902T", "G914C", "A926T", "A929T", "G935A", "C938T", "C944T", "T950G", "C965T", "G995A", "A1070C", "G1073A", "A1079G", "A1083G", "A1085T", "T1088C", "T1091C", "T1100C", "T1112C", "A1133G", "A1145T", "A1148G", "T1167C", "T1172C", "A1178G", "T1181A", "T1191C", "A1193C", "T1202A", "T1205G", "T1220C", "A1226G", "A1238G", "C1250T", "T1259A", "A1292G", "T1295C", "G1298A", "G1304A", "T1310C", "A1313T", "T1316C", "A1319T", "T1331A", "C1339T", "T1349G", "A1355T", "T1356G", "C1358A", "C1370T", "T1386C", "G1397A", "T1418A", "T1428C", "C1437T", "A1451T", "C1454T", "C1470T", "T1472A", "C1484A", "A1487T", "T1523A", "T1566C", "A1580T", "A1589T", "A1601T", "C1610T", "A1613T", "T1631C", "A1643T", "T1664C", "T1673C", "T1703C", "A1709C", "A1712G", "A1730G", "T1740C", "G1742A", "A1748G", "T1799C", "A1817G", "C1827T", "A1842C", "C1847A", "A1883G", "T1907C", "C1913T", "G1919A", "A1928T", "T1943G", "G1946T", "T1949C", "T1955C", "G1976A", "A1988G", "G1997A", "A2003C", "A2018T", "T2024C", "A2027T", "A2030T", "G2033A", "T2037C", "A2045T", "C2049T", "T2051A", "A2054T", "A2084G", "G2087A", "A2088C", "A2090G", "A2093C", "T2099C", "C2100T", "A2105G", "T2114C", "T2117A", "G2138A", "T2168C", "A2178C", "G2186A", "A2216G", "A2222G", "A2261C", "T2276A", "A2285G", "A2286C", "A2288G", "T2294C", "A2309T", "A2311G", "A2330G", "G2333A", "G2355A", "T2359C", "A2360G", "A2366G", "A2378T", "G2387A", "C2388T", "T2412C", "A2414C", "A2415T", "G2426A", "T2429C", "C2480T", "C2492T", "T2498C", "T2504C", "A2510G", "C2522T", "T2543G", "T2561C", "T2573C", "T2582C", "A2597T", "G2600A", "T2604C", "A2610C", "C2624T", "A2627C", "T2636A", "G2651A", "C2663T", "A2672G", "T2675C", "T2684C", "T2693C", "A2714G", "T2720C", "A2738G", "G2744A", "T2747C", "G2753A", "A2765G", "T2768C", "T2792A", "C2795T", "A2801G", "A2804G", "T2813C", "A2822T", "A2843T", "C2853T", "A2858G", "C2896T", "C2915T", "C2918T", "T2945G", "G2975A", "A2999G", "A3011T", "T3026C", "C3032T", "A3041G", "T3056A", "A3065T", "A3074T", "G3101A", "A3107G", "C3111A", "T3119A", "T3137C", "T3149A", "T3155C", "A3161G", "T3176A", "T3182G", "T3191A", "A3197G", "T3207C", "A3209T", "A3221G", "T3224C", "T3251C", "A3254T", "T3290C", "A3293T", "A3296G", "T3297C", "A3338T", "T3353C", "A3380G", "T3383C", "A3398G", "T3401A", "A3416T", "A3446G", "T3461C", "C3471T", "T3488C", "T3497C", "T3500A", "A3512T", "A3524T", "T3530A", "A3536C", "A3581G", "A3590T", "T3603C", "G3605T", "A3614T", "T3615C", "A3617C", "T3638C", "C3651T", "A3662T", "A3677G", "C3701T", "T3704A", "G3707A", "A3737T", "G3749A", "G3755A", "T3758C", "T3779C", "A3785C", "T3798C", "C3821G", "A3824T", "A3830T", "A3857T", "A3866T", "A3875T", "T3878A", "T3893C", "G3908A", "C3920A", "T3938A", "T3944A", "A3951C", "T3960C", "A3962T", "C3977T", "T4013C", "A4019G", "A4037G", "A4043G", "G4058C", "T4064C", "A4070G", "A4094G", "T4097C", "C4101A", "A4112G", "A4127G", "A4130G", "T4142C", "T4148C", "T4169C", "A4181G", "A4191C", "G4196A", "T4197C", "T4205C", "T4217C", "A4241G", "C4251A", "C4257A", "T4259A", "A4271G", "A4283G", "T4289C", "G4292T", "A4304G", "C4310A", "A4313T", "C4326T", "A4334T", "A4350T", "C4354G", "A4364T", "T4367C", "T4382C", "G4385A", "T4391C", "A4394C", "C4395T", "G4400T", "A4415T", "G4418A", "G4460A", "A4469T", "A4472T", "A4481C", "T4490C", "A4493G", "A4499G", "A4505C", "C4514T", "G4529A", "A4538G", "T4550C", "A4553T", "A4574C", "T4580A", "A4604T", "T4607C", "G4611T", "C4619T", "A4625G", "G4646A", "T4664C", "C4674T", "T4676A", "A4679C", "T4685C", "T4694G", "T4703A", "C4712T", "T4718C", "T4730C", "A4754T", "G4787A", "A4832G", "G4838A", "G4856A", "T4860C", "G4862A", "A4865G", "T4868C", "T4880C", "G4884A", "T4895C", "T4916C", "G4965A", "A4979G", "A4988G", "G4997A", "A5012G", "C5016T", "T5018G", "A5033G", "C5039T", "G5051T", "T5057A", "T5084A", "C5087T", "A5090G", "G5093T", "A5096G", "T5123C", "C5141T", "T5153C", "A5162G", "T5171C", "T5183C", "C5223T", "T5234A", "T5246A", "T5252C", "T5258C", "G5267A", "T5270C", "T5273C", "T5279C", "A5297T", "A5300G", "T5306A", "T5309C", "A5316C", "C5331T", "T5358C", "A5360T", "A5378G", "C5396A", "A5402G", "A5429T", "A5456G", "A5465G", "T5471A", "A5489T", "T5490C", "A5504G", "A5513G", "G5516A", "G5531A", "C5534T", "C5540A", "T5546A", "T5550G", "T5552A", "C5561T", "A5583G", "T5591C", "T5594G", "A5595C", "T5601C", "T5615C", "T5621C", "C5639G", "T5651G", "T5663C", "T5669C", "A5693G", "T5717A", "T5765C", "T5768A", "C5786T", "T5798A", "A5801G", "A5804T", "A5810T", "T5813C", "C5832T", "A5837T", "T5840C", "T5843C", "A5882G", "T5891A", "T5897C", "A5927G", "T5936A", "A5939G", "T5949C", "A5951T", "A5990T", "A5996G", "C5997T", "G5999A", "T6023A", "C6027T", "T6029G", "G6035A", "T6059C", "T6074C", "T6080C", "G6083A", "A6092G", "A6140G", "G6152C", "T6153C", "T6156C", "A6158T", "G6176A", "A6182G", "C6200T", "G6212T", "T6218C", "T6248C", "T6258A", "C6291T", "A6296T", "G6299A", "A6302G", "A6348C", "A6350G", "A6356G", "A6360T", "T6362G", "G6365A", "G6375A", "C6395G", "T6401A", "T6410A", "T6416A", "T6422A", "A6435C", "A6443G", "C6452G", "T6453C", "C6456A", "G6461A", "T6464C", "A6470C", "T6476C", "T6479G", "G6482A"], "RdRp": ["A143T", "A265T", "L279M", "I371M", "T435I", "S441A", "K759R", "V774I", "S794C", "T954I", "D1303E", "H1356N", "T1439S", "A1526S", "V1617I", "D1644N", "K1750R", "S1839A", "I1850V", "S2075T", "K2105Q", "I2109L", "V2114I"]}, "labels": {"aa": "RdRp: A143T, A265T, L279M, I371M, T435I, S441A, K759R, V774I, S794C, T954I, D1303E, H1356N, T1439S, A1526S, V1617I, D1644N, K1750R, S1839A, I1850V, S2075T, K2105Q, I2109L, V2114I"}}, "children": [{"name": "PP_006W26M|BA16_LJC1557|Argentina/2016-XX-XX", "node_attrs": {"div": 0.204596, "strain": {"value": "PP_006W26M|BA16_LJC1557|Argentina/2016-XX-XX"}, "accession": "PP_006W26M", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2016-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP151171.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151171.1"}, "PPX_accession": {"value": "PP_006W26M.1", "url": "https://pathoplexus.org/seq/PP_006W26M.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 6443}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["T295C", "T431A", "T488C", "C1100G", "G1106A", "A1175G", "G1334A", "C1432A", "G1439A", "G1490A", "A1520G", "T1538C", "A1614C", "C1773T", "G1877A", "C2004T", "T2934C", "T3074C", "T3317C", "A3359G", "A3704G", "A3746G", "G4353A", "T4610C", "G4739A", "T4886C", "T6251C", "A6278G"], "RdRp": ["I87T", "S466Y", "M614I"]}, "labels": {"aa": "RdRp: I87T, S466Y, M614I"}}}, {"name": "NODE_0000008", "node_attrs": {"div": 0.203047, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G416A", "A629G", "G866A", "A1361G", "A1838G", "C1865T", "G1937A", "T2048C", "A2678G", "A3314G", "A3458G", "G4682A", "A4775G", "C5142A", "A5216G", "A5501G", "T6047C", "A6260G", "T6338C", "A6401G"], "RdRp": ["S1440G"]}, "labels": {"aa": "RdRp: S1440G"}}, "children": [{"name": "NODE_0000009", "node_attrs": {"div": 0.208547, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A851G", "G890A", "T1280C", "G1715A", "T1733C", "A2057G", "T2075C", "A2303G", "T2318C", "A2933G", "A2960G", "T3344C", "T3390C", "G3581A", "T3632C", "T3701C", "C3899T", "A3968G", "G4015A", "G4127A", "G4210C", "T4439C", "G4694A", "A4721G", "A4745G", "G4832A", "A4877G", "T4885C", "G4988A", "G5006A", "G5336A", "A5342G", "T5868C", "A6194G", "C6450T"], "RdRp": ["R1327K", "S1392T", "I1617T"]}, "labels": {"aa": "RdRp: R1327K, S1392T, I1617T"}}, "children": [{"name": "PP_006W20Z|BA02_SMM484|Argentina/2002-XX-XX", "node_attrs": {"div": 0.208548, "strain": {"value": "PP_006W20Z|BA02_SMM484|Argentina/2002-XX-XX"}, "accession": "PP_006W20Z", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP151165.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151165.1"}, "PPX_accession": {"value": "PP_006W20Z.1", "url": "https://pathoplexus.org/seq/PP_006W20Z.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 6443}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0UC|Arg-h484|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.208548, "strain": {"value": "PP_006W0UC|Arg-h484|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0UC", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "OP555736.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555736.1"}, "PPX_accession": {"value": "PP_006W0UC.1", "url": "https://pathoplexus.org/seq/PP_006W0UC.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6443}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000010", "node_attrs": {"div": 0.205703, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G818A", "C839T", "G1385A", "T1746C", "A2051G", "G2311A", "T2486C", "G2510A", "A2544G", "A3275C", "C3353T", "C3536T", "T3552C", "T4313C", "A5111G", "A5144G", "G5882A"], "RdRp": ["R759K", "T837A"]}, "labels": {"aa": "RdRp: R759K, T837A"}}, "children": [{"name": "NODE_0000011", "node_attrs": {"div": 0.206946, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G6T", "T7A", "G98A", "C786T", "T1728C", "G2360A", "C3035T", "C5222T", "G5996A", "T6221C"]}}, "children": [{"name": "PP_006W24R|BA02_AOA490|Argentina/2002-XX-XX", "node_attrs": {"div": 0.207411, "strain": {"value": "PP_006W24R|BA02_AOA490|Argentina/2002-XX-XX"}, "accession": "PP_006W24R", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP151169.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151169.1"}, "PPX_accession": {"value": "PP_006W24R.1", "url": "https://pathoplexus.org/seq/PP_006W24R.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 6473}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["C11G", "T12A", "G2543A", "G3581A", "C6453T"]}}}, {"name": "NODE_0000012", "node_attrs": {"div": 0.206947, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W25P|BA02_ROM495|Argentina/2002-XX-XX", "node_attrs": {"div": 0.206948, "strain": {"value": "PP_006W25P|BA02_ROM495|Argentina/2002-XX-XX"}, "accession": "PP_006W25P", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP151170.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151170.1"}, "PPX_accession": {"value": "PP_006W25P.1", "url": "https://pathoplexus.org/seq/PP_006W25P.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 6443}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W23T|BA02_RJF487|Argentina/2002-XX-XX", "node_attrs": {"div": 0.207102, "strain": {"value": "PP_006W23T|BA02_RJF487|Argentina/2002-XX-XX"}, "accession": "PP_006W23T", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP151168.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151168.1"}, "PPX_accession": {"value": "PP_006W23T.1", "url": "https://pathoplexus.org/seq/PP_006W23T.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 6443}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["C3108T"], "RdRp": ["H1025Y"]}, "labels": {"aa": "RdRp: H1025Y"}}}]}]}, {"name": "NODE_0000013", "node_attrs": {"div": 0.207262, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G365A", "A893G", "A992G", "T1640C", "T1688C", "C2213T", "C2684T", "C3488T", "A5198G", "G5456A"]}}, "children": [{"name": "PP_006W22V|BA02_VO483|Argentina/2002-XX-XX", "node_attrs": {"div": 0.207729, "strain": {"value": "PP_006W22V|BA02_VO483|Argentina/2002-XX-XX"}, "accession": "PP_006W22V", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP151167.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151167.1"}, "PPX_accession": {"value": "PP_006W22V.1", "url": "https://pathoplexus.org/seq/PP_006W22V.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 6443}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["A251C", "G950A", "C6450T"], "RdRp": ["Q72H"]}, "labels": {"aa": "RdRp: Q72H"}}}, {"name": "NODE_0000014", "node_attrs": {"div": 0.207263, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2AD|BA02_VVD480|Argentina/2002-XX-XX", "node_attrs": {"div": 0.207778, "strain": {"value": "PP_006W2AD|BA02_VVD480|Argentina/2002-XX-XX"}, "accession": "PP_006W2AD", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP504849.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP504849.1"}, "PPX_accession": {"value": "PP_006W2AD.1", "url": "https://pathoplexus.org/seq/PP_006W2AD.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 2}, "date_released": {"value": "2024-09-23"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 3892}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["G3677A", "A6305G"]}}}, {"name": "PP_006W21X|BA02_VVN481|Argentina/2002-XX-XX", "node_attrs": {"div": 0.207418, "strain": {"value": "PP_006W21X|BA02_VVN481|Argentina/2002-XX-XX"}, "accession": "PP_006W21X", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP151166.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151166.1"}, "PPX_accession": {"value": "PP_006W21X.1", "url": "https://pathoplexus.org/seq/PP_006W21X.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 6482}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["C6453T"]}}}]}]}]}]}]}]}]}]}, {"name": "NODE_0000015", "node_attrs": {"div": 0.0184094, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G88C", "T147C", "C191T", "C245T", "T323A", "A338T", "A401G", "T446C", "G485A", "G512T", "T566C", "C653T", "G674A", "G704A", "G746A", "G842A", "G896A", "C938A", "A1023G", "A1028G", "C1046A", "C1080T", "T1082A", "G1116T", "T1160A", "A1193T", "G1293A", "G1334A", "C1389T", "G1397A", "C1454A", "G1478A", "G1490A", "T1625A", "C1847A", "C1865T", "C1944T", "A2069T", "G2072A", "G2150A", "G2159T", "A2198T", "A2252G", "A2360C", "A2372T", "G2384A", "A2544G", "A2548T", "G2591A", "A2621C", "A2741T", "A2921G", "G3038A", "C3062A", "G3174A", "T3185A", "C3320A", "T3527A", "A3536T", "T3656A", "C3690T", "A3713T", "T3734C", "A3764T", "T3848A", "C3899T", "C3920A", "G4113T", "G4114T", "A4322G", "A4373G", "A4415T", "T4688A", "A4754T", "C4778G", "C4826T", "T4841A", "T4961A", "C5016T", "C5039T", "T5105A", "T5204A", "G5282A", "C5331T", "C5364A", "C5376A", "C5604T", "T5669A", "C5738T", "T5840A", "C5903T", "C5987T", "T6023A", "T6065A", "G6083A", "T6128G", "T6188A", "C6203T", "T6248C", "T6320A", "A6342C", "A6398G", "T6453C"], "RdRp": ["V350I", "A361S", "I371L", "H443N", "Q838L"]}, "labels": {"aa": "RdRp: V350I, A361S, I371L, H443N, Q838L"}}, "children": [{"name": "PP_006W1W7|807266_L|Paraguay|1997|Paraguay/1997-XX-XX", "node_attrs": {"div": 0.208548, "strain": {"value": "PP_006W1W7|807266_L|Paraguay|1997|Paraguay/1997-XX-XX"}, "accession": "PP_006W1W7", "author": {"author": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J.", "value": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J."}, "date": {"value": "1997-XX-XX"}, "abbr_authors": {"value": "Shedroff et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP058738.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP058738.1"}, "PPX_accession": {"value": "PP_006W1W7.1", "url": "https://pathoplexus.org/seq/PP_006W1W7.1"}, "institution": {"value": "Centers for Disease Control and Prevention, Viral Special Pathogens Branch"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-04-30"}, "host": {"value": "small vesper mouse"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Paraguay"}, "region": {"value": "South America"}, "length": {"value": 6537}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["A26G", "G27A", "T29C", "A30T", "G31A", "A34C", "G44A", "C47T", "A50G", "G53A", "T56A", "G62A", "T68A", "G70A", "G71A", "T76A", "A86T", "G89A", "A92G", "A110T", "A116C", "A123C", "G125T", "A138C", "A140G", "T146C", "G149T", "T152A", "C155T", "G158A", "A164T", "A167G", "T193G", "A194T", "A206T", "C209G", "C210G", "A212G", "C215A", "C219T", "C221A", "T227A", "A233T", "T236C", "A243G", "A248T", "A251G", "C290T", "A314G", "A346C", "C350A", "G356A", "T359C", "C374T", "G386T", "T387G", "A392T", "T398C", "A408C", "G410C", "A413G", "A425T", "C428G", "C429T", "T431G", "T437C", "G438A", "G443A", "A449G", "C450T", "T452A", "A455T", "A456G", "A461G", "G466A", "A468C", "A469G", "A470T", "T473C", "C486A", "T488A", "A492C", "T504A", "C505T", "A506G", "G509T", "A515T", "A530G", "A533T", "T539A", "T545A", "A548G", "G560A", "T578G", "G581A", "C588A", "C590A", "T602A", "G617A", "T626C", "T627C", "A629T", "A634G", "G635A", "T636C", "T637A", "A638G", "A645C", "G647T", "A650T", "A662T", "T668C", "T672C", "A677G", "T680C", "C686T", "A689T", "C692A", "A701C", "A702C", "A706T", "A712G", "T725C", "A726C", "G728C", "G734A", "C738T", "G752T", "A753C", "T755G", "C758A", "C761T", "A764G", "A765T", "T773C", "C776T", "G779A", "A780C", "T782A", "G788A", "A791T", "A809G", "C812T", "A824C", "G828T", "T830A", "A837G", "T838C", "A852C", "G853A", "T854C", "C855T", "G863A", "T865A", "T870A", "A873T", "A874C", "G875A", "G878T", "A882T", "A883C", "A887G", "A893T", "A902G", "C912T", "C915A", "G917T", "G920A", "G935T", "C937T", "C942T", "A944G", "A953C", "T956A", "C965T", "G968A", "T977C", "A978C", "G980A", "A981C", "T989C", "C990T", "A998T", "A1006T", "T1025C", "A1029G", "T1030C", "G1031A", "T1038C", "G1040A", "T1043C", "T1052C", "T1067A", "A1070T", "T1076A", "T1094C", "G1106T", "C1109T", "C1121T", "C1123A", "T1124A", "G1130T", "A1142C", "A1145T", "C1146T", "G1151A", "T1152A", "A1175C", "C1176A", "T1177G", "T1185G", "C1191A", "A1205G", "G1208A", "A1214G", "A1216C", "G1217T", "A1229C", "T1240C", "C1241A", "A1244T", "T1247C", "C1250T", "A1253T", "G1260T", "T1265C", "A1271C", "A1275C", "T1277A", "T1280C", "G1281A", "C1282A", "A1283T", "G1287T", "A1292G", "T1294C", "G1301A", "C1302A", "C1307A", "T1308C", "A1310G", "A1313T", "C1317T", "A1340C", "A1341C", "C1345T", "G1348C", "T1349A", "G1352C", "T1355C", "T1356A", "C1358A", "A1376G", "G1385A", "T1386C", "G1388C", "G1391A", "A1393G", "T1394C", "C1413A", "T1418G", "A1420G", "T1424C", "T1431A", "C1432G", "C1437T", "G1442A", "A1451T", "A1461C", "C1466T", "C1475A", "A1502T", "G1506T", "G1514C", "T1517A", "C1518A", "T1520A", "A1535T", "A1544G", "G1556T", "T1566C", "G1568T", "T1575C", "G1577A", "A1580G", "A1583C", "A1589T", "A1601G", "T1604A", "T1607A", "A1613T", "A1643T", "A1650T", "A1652G", "C1657A", "T1664C", "A1665C", "T1673A", "G1676A", "C1679T", "A1682G", "T1685A", "A1695G", "A1709G", "A1712G", "T1728C", "A1734C", "T1737C", "T1740C", "G1742A", "A1754T", "A1757G", "C1770T", "T1772G", "A1784C", "C1817A", "C1826T", "C1827T", "C1850T", "T1853C", "A1868G", "G1877A", "G1886A", "G1892A", "A1895C", "T1910C", "C1913T", "T1916A", "T1919A", "A1928T", "A1940T", "T1943A", "T1949C", "T1965C", "C1979T", "A1986C", "A1988T", "A1991C", "G1997A", "T2000C", "C2004T", "A2012G", "C2015T", "T2024A", "A2030T", "T2034A", "T2048C", "T2091C", "A2093T", "A2096G", "A2105T", "T2108A", "T2111C", "T2117A", "T2135G", "C2156T", "T2162A", "A2171G", "T2177C", "G2179A", "T2183C", "A2195G", "A2201C", "T2210C", "A2222G", "T2229C", "G2231C", "A2239C", "T2240A", "T2241C", "A2243T", "T2264C", "C2273T", "A2274G", "T2276A", "C2295A", "G2297T", "A2303G", "A2307G", "T2315C", "C2325T", "T2327A", "T2328A", "A2330G", "A2336G", "C2339T", "C2344A", "A2345T", "T2348A", "A2358G", "T2359C", "T2363A", "A2366T", "A2369T", "A2374T", "A2378G", "C2388T", "A2390G", "T2396C", "A2399G", "G2402A", "T2406G", "C2407T", "A2408G", "G2411A", "A2423G", "G2426A", "T2429G", "T2438C", "A2450G", "T2460C", "G2462T", "T2468A", "A2472G", "C2474T", "A2493C", "A2494G", "A2495C", "A2498G", "T2501C", "T2504C", "T2507C", "C2514A", "C2516G", "C2526T", "A2534T", "T2543C", "A2546C", "C2547T", "G2549A", "A2555G", "A2561G", "T2564C", "T2570A", "T2573A", "G2579A", "T2603C", "A2606G", "T2609C", "A2615T", "A2627T", "T2636A", "T2639G", "G2651A", "T2660G", "A2662T", "C2663T", "A2669C", "T2675A", "A2676C", "A2678T", "T2684A", "A2705G", "A2708T", "T2720C", "A2735T", "G2744A", "A2750G", "G2756A", "A2765G", "T2773A", "A2780T", "T2807C", "A2822T", "A2828G", "G2831A", "C2834A", "A2837G", "T2840C", "A2847C", "A2852T", "A2864T", "C2865T", "T2867A", "A2868C", "A2870G", "A2882C", "A2883T", "T2884C", "A2891G", "T2894A", "T2909G", "C2915A", "C2928A", "G2930A", "A2936G", "T2981C", "T3002C", "A3005T", "A3011T", "T3026C", "A3033C", "T3047C", "T3053C", "A3063C", "C3111A", "A3113G", "T3116C", "T3119A", "A3123G", "T3125G", "C3135T", "A3136G", "A3140T", "G3141A", "A3146T", "T3149A", "G3152T", "C3158T", "T3159C", "A3161T", "G3162T", "T3176G", "T3182G", "T3190C", "T3191A", "A3194C", "A3200G", "G3215A", "T3218C", "T3245G", "G3246T", "A3257T", "A3275G", "C3282T", "A3283G", "A3284C", "G3287A", "T3290C", "A3293T", "A3296G", "T3323C", "T3326C", "T3350C", "A3355T", "A3368G", "A3380T", "T3389C", "A3398G", "T3401C", "A3404T", "A3419G", "T3428C", "A3438G", "A3440T", "G3458A", "T3467C", "A3473C", "G3479A", "C3482T", "A3485T", "T3488G", "T3489C", "A3491C", "T3497C", "T3503A", "A3524C", "T3551C", "C3552T", "T3557A", "T3572C", "T3578A", "A3581T", "C3587T", "T3593C", "G3594A", "A3605G", "A3614T", "A3620T", "G3626A", "T3638C", "C3641T", "T3650C", "A3653T", "A3665G", "T3674C", "T3681G", "T3684C", "A3686G", "C3701T", "T3708C", "C3712G", "C3717T", "A3719G", "A3725T", "A3728T", "A3737G", "A3743G", "G3749A", "T3753C", "T3767A", "T3770C", "A3773G", "A3779C", "T3788C", "A3800G", "T3805C", "A3806T", "A3812G", "G3819A", "G3825A", "T3827C", "A3830T", "C3831T", "C3845T", "C3864T", "A3866G", "T3878C", "T3879A", "T3881A", "T3903C", "A3905G", "A3914T", "T3916A", "C3917T", "T3923A", "A3925T", "T3935A", "C3936A", "G3937A", "T3938A", "A3951C", "G3952A", "G3953A", "T3965A", "G3980A", "A3986G", "T3987C", "G3991A", "T3998C", "T4017C", "A4019G", "T4022C", "A4037C", "A4043G", "A4049G", "T4064A", "G4071T", "T4096A", "A4100C", "T4103G", "A4104T", "G4105C", "T4109C", "T4114C", "A4117C", "T4118C", "A4124T", "C4125A", "G4126A", "T4127A", "T4151A", "A4160G", "A4161G", "A4162G", "T4169C", "T4172C", "T4173C", "G4175T", "A4181T", "C4185T", "T4187A", "A4190G", "G4196A", "G4199A", "T4208A", "C4211T", "T4214A", "A4215G", "A4241C", "T4242C", "C4248T", "T4250A", "C4251A", "C4257A", "T4259G", "A4268C", "A4286T", "G4292A", "T4293C", "A4294T", "C4310G", "C4326T", "T4328G", "A4334C", "T4337C", "T4349A", "C4351G", "A4352T", "C4358T", "G4372A", "A4377C", "C4383T", "G4385A", "G4397A", "A4400T", "T4403C", "A4409T", "A4442G", "A4451C", "A4452C", "G4454C", "C4463G", "T4464G", "A4466T", "A4469T", "A4470G", "A4481T", "A4485C", "G4502A", "T4511A", "A4515C", "A4520G", "G4523A", "G4529A", "T4541C", "A4544T", "T4547C", "A4549C", "G4554A", "G4556T", "T4559A", "G4568A", "A4575G", "T4576C", "G4577A", "G4583A", "A4604G", "G4611T", "T4625C", "A4631T", "A4637T", "G4646A", "T4649C", "A4661T", "A4664G", "A4670G", "A4673G", "A4679G", "G4682A", "A4689G", "T4691C", "T4694A", "T4697G", "A4700G", "T4703A", "C4710A", "C4712A", "A4721G", "A4724G", "T4725C", "T4751G", "A4760T", "A4766T", "A4781T", "G4787A", "C4793T", "C4806T", "T4808G", "G4811A", "C4813G", "A4814C", "G4823A", "C4835A", "G4837A", "A4842C", "G4856A", "G4862A", "A4869G", "G4871T", "A4877G", "G4884C", "T4885A", "C4886A", "A4894G", "T4913C", "A4914T", "T4916G", "A4919T", "T4925A", "C4926A", "A4928G", "G4931A", "A4937T", "T4955C", "G4958A", "G4970A", "T4976G", "A4982G", "C4986T", "C4990A", "A4991T", "T4995C", "G4997C", "A5009G", "T5018A", "A5030T", "G5036A", "A5051T", "T5054G", "T5057A", "T5060G", "T5063A", "T5069A", "T5084G", "A5090T", "C5091T", "A5096T", "T5099C", "G5103A", "T5104C", "T5106C", "T5124C", "A5126G", "A5135G", "A5138T", "C5141T", "C5142A", "A5156T", "T5159A", "A5207G", "T5209A", "C5223T", "C5226A", "T5228A", "T5231A", "T5234C", "T5246G", "T5252C", "G5261A", "G5277T", "A5278C", "T5279A", "A5283C", "A5285G", "A5297T", "C5309A", "A5315G", "A5318C", "A5324T", "G5330A", "G5333A", "C5334A", "A5345G", "A5351G", "C5352A", "T5358C", "T5363A", "A5387T", "C5396T", "T5405A", "C5411T", "T5418C", "A5420G", "C5423T", "G5433T", "T5438A", "T5441C", "A5456G", "T5468C", "A5474T", "T5488C", "A5495T", "C5505A", "A5511C", "A5512G", "G5531A", "G5544A", "A5549G", "T5550G", "T5552A", "T5558C", "C5561T", "C5562A", "T5564A", "T5582C", "G5585A", "G5588A", "T5591C", "G5597A", "A5609T", "T5621C", "T5636C", "A5660T", "G5663C", "A5678G", "A5681T", "A5684T", "G5687A", "C5694T", "T5702A", "A5708T", "A5712G", "T5717G", "G5723A", "C5724T", "C5726G", "T5727C", "A5729T", "A5732G", "C5735T", "T5765A", "G5795A", "T5814C", "G5831A", "C5832T", "A5834G", "A5837G", "C5841T", "T5843A", "A5850C", "A5853G", "C5861A", "C5862T", "C5867T", "T5870A", "T5879A", "T5891A", "T5897C", "T5900C", "A5909T", "A5912T", "A5939G", "A5951G", "A5967G", "T5969G", "G5981T", "A5993T", "G5999T", "A6017G", "A6032G", "A6041T", "G6056A", "A6095T", "A6102G", "T6104A", "G6116A", "T6122A", "G6133A", "G6149A", "A6155C", "T6156A", "T6170G", "T6173A", "A6182G", "C6191T", "T6197G", "C6200T", "T6206A", "A6207G", "C6215T", "A6216G", "T6218G", "C6219T", "A6221G", "C6233T", "A6239T", "C6254T", "A6255G", "C6257G", "C6259T", "C6262T", "A6263T", "A6272C", "A6275T", "C6276T", "A6302G", "T6311G", "A6314G", "G6335A", "T6341C", "G6344T", "C6347T", "A6349T", "A6350T", "T6361G", "T6362A", "G6365A", "C6373T", "A6374T", "G6375T", "T6377A", "T6380A", "A6381C", "A6383T", "T6392C", "G6393A", "A6404G", "G6408A", "C6411T", "C6413G", "T6422C", "T6431A", "T6443A", "T6449A", "C6452T", "G6455T", "C6456A", "G6461A", "A6470T", "C6477T", "G6480A", "T6481C", "C6487T", "T6494C", "G6499T", "G6500A", "A6502G", "T6505C", "A6506C", "A6508T", "T6512G", "T6514A", "C6520T", "G6522A", "T6531C", "G6533A", "T6534A", "G6536T", "C6547-", "C6548-", "G6549-"], "RdRp": ["R12K", "L14Q", "I53S", "Q59E", "I70V", "N104T", "S118A", "K125H", "E130D", "V135I", "E140D", "I141V", "R144K", "K145R", "P151T", "S157M", "K200R", "T201Q", "Y224F", "N226S", "K239N", "I240L", "D241E", "I244L", "N249Q", "A265S", "I268A", "G273H", "H274Y", "L279M", "Q280S", "K281N", "N283S", "L294I", "A301V", "I316L", "N324I", "M332A", "D347E", "P363Q", "L373I", "L381S", "S384A", "L386I", "K394T", "I402T", "A409S", "I414L", "A416N", "A418S", "V420T", "Q423K", "N436H", "G438T", "M439I", "S441T", "N453S", "L460I", "K462R", "I476L", "A491S", "I539L", "S541Q", "I544L", "I554V", "V614I", "S667T", "R715K", "N735T", "I747V", "Q754N", "K758V", "L765M", "T770N", "T775A", "N776K", "E778D", "D780I", "S791V", "I813V", "K820R", "D868E", "N876F", "F913Y", "N938H", "V950S", "N1000H", "S1030G", "H1034C", "D1036N", "K1039N", "A1043S", "G1047K", "V1052T", "A1071S", "Q1083C", "Y1107F", "Q1123H", "I1135V", "V1187I", "S1216A", "A1226G", "V1257A", "V1262I", "F1282I", "F1294Y", "Y1297F", "R1301K", "R1306Q", "S1319N", "F1354Y", "H1356Q", "G1360S", "E1361A", "R1364K", "N1376G", "I1394V", "Y1420L", "T1439S", "S1440N", "R1446K", "M1448L", "L1477V", "T1479A", "N1505T", "V1507I", "M1514A", "A1526S", "E1530D", "S1552G", "A1593S", "R1601K", "M1612V", "S1616N", "V1617Q", "N1620S", "I1627L", "T1652N", "I1676V", "I1683M", "V1690T", "L1725Q", "D1748S", "K1750R", "L1767M", "Q1773K", "I1776V", "A1800S", "V1818A", "K1826R", "V1837I", "S1839A", "I1867V", "E1883D", "I1893V", "N1940D", "I1978V", "E1982D", "R2033K", "L2041I", "I2058V", "I2061V", "S2074G", "S2075L", "T2076V", "K2105I", "I2109R", "T2113I", "V2114L", "V2120I", "V2125I", "P2148S", "V2149T", "T2151I"]}, "labels": {"aa": "RdRp: R12K, L14Q, I53S, Q59E, I70V, N104T, S118A, K125H, E130D, V135I, E140D, I141V, R144K, K145R, P151T, S157M, K200R, T201Q, Y224F, N226S, K239N, I240L, D241E, I244L, N249Q, A265S, I268A, G273H, H274Y, L279M, Q280S, K281N, N283S, L294I, A301V, I316L, N324I, M332A, D347E, P363Q, L373I, L381S, S384A, L386I, K394T, I402T, A409S, I414L, A416N, A418S, V420T, Q423K, N436H, G438T, M439I, S441T, N453S, L460I, K462R, I476L, A491S, I539L, S541Q, I544L, I554V, V614I, S667T, R715K, N735T, I747V, Q754N, K758V, L765M, T770N, T775A, N776K, E778D, D780I, S791V, I813V, K820R, D868E, N876F, F913Y, N938H, V950S, N1000H, S1030G, H1034C, D1036N, K1039N, A1043S, G1047K, V1052T, A1071S, Q1083C, Y1107F, Q1123H, I1135V, V1187I, S1216A, A1226G, V1257A, V1262I, F1282I, F1294Y, Y1297F, R1301K, R1306Q, S1319N, F1354Y, H1356Q, G1360S, E1361A, R1364K, N1376G, I1394V, Y1420L, T1439S, S1440N, R1446K, M1448L, L1477V, T1479A, N1505T, V1507I, M1514A, A1526S, E1530D, S1552G, A1593S, R1601K, M1612V, S1616N, V1617Q, N1620S, I1627L, T1652N, I1676V, I1683M, V1690T, L1725Q, D1748S, K1750R, L1767M, Q1773K, I1776V, A1800S, V1818A, K1826R, V1837I, S1839A, I1867V, E1883D, I1893V, N1940D, I1978V, E1982D, R2033K, L2041I, I2058V, I2061V, S2074G, S2075L, T2076V, K2105I, I2109R, T2113I, V2114L, V2120I, V2125I, P2148S, V2149T, T2151I"}}}, {"name": "NODE_0000016", "node_attrs": {"div": 0.116601, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G77T", "T107C", "C182T", "A192G", "C209T", "C215T", "C221G", "T230C", "A254C", "A260G", "C272A", "T281C", "A285T", "A287T", "C290A", "G293A", "A294G", "T296A", "A299G", "T311C", "A312C", "T331A", "C332T", "C350G", "C374A", "A395T", "A404G", "G410A", "A424G", "A432C", "G434A", "A444C", "G445A", "G462T", "A470G", "A482G", "G493A", "T503C", "C518T", "T536C", "T539C", "A558C", "A563G", "T572G", "C590T", "T591C", "G617C", "T632A", "G647A", "A656G", "C686A", "A695T", "A701G", "T707C", "T713C", "G728A", "A737G", "T749A", "A750C", "A751G", "G770A", "G792A", "G797A", "C823G", "A824T", "T836G", "C845A", "A851G", "G864T", "G866A", "G872A", "A873C", "G878A", "T881C", "T884C", "T899A", "G914C", "C915T", "A923T", "A929G", "T956C", "T971C", "G972A", "A983T", "C986G", "G995A", "G1004A", "T1007C", "T1013A", "T1025A", "A1034T", "T1059C", "A1079G", "A1085T", "T1097C", "A1102G", "A1133G", "A1142G", "T1157A", "T1178C", "T1196C", "C1227T", "A1238G", "A1257G", "T1259G", "T1277C", "T1289A", "T1295A", "A1319T", "T1328C", "G1337A", "C1339T", "C1370A", "A1376T", "T1379A", "G1385C", "A1415T", "T1433C", "A1436T", "G1445A", "T1472A", "G1496A", "T1550C", "A1565T", "C1571T", "A1574T", "T1598A", "C1610T", "C1619T", "C1646A", "A1649G", "C1656G", "C1670T", "G1691T", "T1696C", "A1697C", "A1709T", "T1715C", "T1733C", "A1736G", "T1751C", "A1757C", "A1763G", "A1778C", "T1793C", "T1811C", "G1814A", "C1823T", "A1829T", "G1832A", "G1848A", "A1871C", "A1875G", "A1917C", "T1925G", "T1934A", "C1937A", "T1955G", "C1962T", "T1970A", "G1976A", "C1994T", "A2018T", "A2027T", "A2036T", "T2037C", "G2039A", "A2045T", "A2051G", "T2078C", "A2083G", "A2088C", "A2093G", "T2099A", "C2100T", "T2114C", "A2120G", "A2123C", "T2126A", "A2144C", "A2147T", "C2148T", "G2180A", "G2186A", "T2189C", "A2192T", "T2213C", "A2225G", "T2237G", "G2249A", "A2255T", "T2265C", "A2267T", "G2270A", "A2285T", "A2291G", "A2300G", "T2308A", "A2310C", "T2328C", "A2373G", "A2390T", "C2393T", "T2412C", "T2432C", "A2459T", "G2462A", "C2480T", "T2486C", "C2525T", "A2528C", "T2582A", "T2583C", "A2597T", "C2624T", "A2648G", "A2654T", "T2660A", "A2662C", "C2663A", "A2678G", "A2687G", "T2693C", "A2696G", "C2733T", "T2747G", "A2748C", "T2762A", "T2774C", "A2783T", "C2795G", "A2810T", "A2813T", "A2822G", "A2832G", "C2834T", "T2835C", "C2843T", "G2861A", "A2883G", "A2906T", "G2913A", "T2914G", "T2957C", "G2975A", "A2984T", "A2996G", "G3023C", "C3024T", "T3026A", "A3041G", "A3063T", "A3066C", "A3068C", "A3074T", "A3083T", "T3131A", "A3134T", "A3150G", "G3152A", "A3161G", "T3179A", "T3182C", "T3188C", "T3190A", "A3197G", "T3207C", "A3209T", "A3252G", "A3254C", "T3261C", "G3263T", "A3272G", "A3275C", "G3281A", "A3302G", "T3329A", "T3353C", "A3362G", "C3377A", "A3392G", "T3401A", "A3404G", "A3407G", "A3413G", "T3422C", "A3424T", "A3449G", "C3483T", "T3488A", "A3515T", "A3521G", "G3530A", "A3539T", "G3548A", "G3554T", "A3560T", "A3581G", "A3590T", "A3602C", "T3606C", "C3623T", "T3624C", "G3626T", "T3632G", "C3633T", "C3651T", "T3668C", "A3698T", "T3704A", "G3707A", "T3740C", "A3761T", "T3782C", "T3788A", "T3797C", "T3798C", "A3800T", "A3806G", "A3809T", "T3813G", "T3827A", "A3833T", "A3857T", "A3866T", "C3869A", "C3902T", "G3908A", "A3929G", "C3932T", "G3941A", "A3962G", "C3977T", "T4004C", "T4013C", "A4014C", "C4031T", "C4046T", "A4073T", "G4105A", "T4118G", "T4139G", "C4163T", "T4184C", "T4214C", "A4253T", "G4274A", "T4289C", "T4316C", "A4319G", "T4325A", "A4331T", "G4366C", "G4385C", "G4397T", "G4418A", "A4421G", "A4427T", "T4436C", "A4487G", "A4499T", "C4514T", "A4532T", "T4535A", "T4547A", "A4553G", "C4565T", "A4575C", "G4577T", "T4580A", "A4590G", "A4592C", "T4602C", "A4604T", "T4616C", "T4622A", "T4625G", "T4640C", "A4658T", "A4664T", "T4667C", "C4674T", "T4676A", "T4680C", "G4682T", "G4739A", "A4760G", "T4772A", "A4784T", "T4821C", "G4838A", "G4844A", "C4847T", "A4850G", "A4868T", "A4874T", "A4882G", "C4883T", "C4886T", "C4898T", "A4904G", "A4907G", "T4934C", "G4940A", "T4967A", "A4994T", "T5018G", "C5034A", "G5042A", "C5043A", "A5045G", "G5061A", "G5093C", "C5094T", "A5150C", "A5162G", "T5177C", "C5192T", "T5195C", "A5225C", "T5258A", "G5267A", "A5268G", "G5284A", "A5288G", "A5294C", "C5295T", "A5300G", "A5312C", "C5325T", "A5328C", "T5348G", "G5354A", "G5357A", "G5361A", "G5372A", "T5381C", "G5393A", "A5406C", "A5408G", "C5412T", "G5426A", "G5444A", "A5456T", "T5462G", "G5480A", "A5492G", "C5493A", "T5502C", "A5504T", "G5507T", "T5519A", "C5540A", "T5546A", "T5550A", "C5551G", "G5585T", "T5594A", "A5595C", "A5603G", "G5634A", "C5637A", "T5651A", "T5690C", "A5711T", "T5717A", "T5720A", "T5747C", "A5759C", "A5780T", "T5781C", "G5783A", "A5804T", "A5810G", "C5819T", "T5852G", "A5864C", "G5885A", "A5906T", "A5909G", "T5924C", "A5927G", "A5942G", "A5957T", "A5990T", "G6020A", "C6027T", "T6029G", "T6053G", "T6068A", "A6074T", "A6092G", "T6101C", "A6107G", "T6125G", "T6146A", "G6149T", "C6150A", "G6151A", "G6176A", "T6180C", "A6182T", "T6197A", "C6215A", "T6218C", "T6227A", "C6257T", "G6261A", "A6266T", "A6269T", "T6284A", "A6293G", "G6299A", "T6300C", "A6302T", "A6317G", "T6326A", "G6329A", "G6344A", "G6353T", "G6382A", "T6401A", "T6422A", "G6425A", "C6450T", "C6452G", "T6467C", "A6470G", "T6476C", "C6485A", "G6496A", "A6497G", "A6502T", "T6509C", "G6556A"], "RdRp": ["I53V", "T84S", "I87V", "F99Y", "M126I", "E130G", "K133Q", "S137H", "A143S", "R153K", "T201L", "K239R", "E253K", "T263S", "G273S", "E277L", "D313N", "K356R", "I408V", "V420I", "T435I", "V437A", "G438S", "E450D", "S541A", "I554T", "V605I", "K683R", "K759Q", "T775I", "N876S", "I933V", "V960S", "D1032E", "E1033D", "K1039E", "G1047N", "V1052N", "I1073V", "Y1130F", "K1258N", "S1260A", "I1264V", "S1346A", "S1357N", "G1360L", "S1444T", "M1514L", "I1519V", "E1541D", "A1593T", "D1644E", "I1745V", "V2023I", "R2039K", "E2106D", "R2116K"]}, "labels": {"aa": "RdRp: I53V, T84S, I87V, F99Y, M126I, E130G, K133Q, S137H, A143S, R153K, T201L, K239R, E253K, T263S, G273S, E277L, D313N, K356R, I408V, V420I, T435I, V437A, G438S, E450D, S541A, I554T, V605I, K683R, K759Q, T775I, N876S, I933V, V960S, D1032E, E1033D, K1039E, G1047N, V1052N, I1073V, Y1130F, K1258N, S1260A, I1264V, S1346A, S1357N, G1360L, S1444T, M1514L, I1519V, E1541D, A1593T, D1644E, I1745V, V2023I, R2039K, E2106D, R2116K"}}, "children": [{"name": "NODE_0000017", "node_attrs": {"div": 0.135968, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C47T", "T146C", "T173C", "G200A", "C344T", "T431C", "T452G", "T457C", "A542G", "A548G", "T554C", "T608A", "A677G", "T680C", "G815A", "G1047T", "C1064T", "A1072G", "A1082G", "T1085C", "A1118G", "C1190T", "C1358T", "T1386C", "G1391A", "T1517C", "T1574C", "T1590C", "A1595G", "A1646G", "T1655C", "C1661T", "T1694C", "A1712G", "A1748G", "C1757T", "A1781G", "A1784T", "T1949C", "T1958C", "T2027C", "G2033A", "A2090T", "T2117C", "T2141C", "C2165T", "T2168C", "T2177C", "A2288G", "T2294C", "A2399G", "T2405C", "T2429C", "T2504C", "T2543G", "C2547T", "A2555G", "G2753A", "G2756A", "G2831A", "T2903C", "C2987T", "A2990G", "T3039C", "C3068T", "T3098C", "G3132A", "A3146G", "T3170C", "T3218C", "C3305T", "T3344C", "T3357C", "A3359G", "T3461C", "T3684C", "A3692G", "T3818C", "T3956C", "T4010C", "A4019G", "T4061C", "T4256C", "A4271G", "A4352G", "A4354G", "C4601T", "T4703C", "T4704C", "T4808C", "T4860C", "G4931A", "T4995C", "T5000C", "T5123G", "C5225T", "A5324G", "G5333A", "A5390G", "A5501G", "A5510G", "T5625C", "G5639A", "A5651G", "C5726T", "T5780C", "A5783C", "T5792C", "A5801G", "T5984C", "T6047C", "A6086G", "T6149C", "T6164C", "T6209C", "C6219T", "C6276T", "T6290C", "G6335A", "A6389G", "T6434C"], "RdRp": ["I141T", "A338S", "K346R", "D1033N"]}, "labels": {"aa": "RdRp: I141T, A338S, K346R, D1033N"}}, "children": [{"name": "PP_006W0D9|Chile-9717869|Chile/1997-XX-XX", "node_attrs": {"div": 0.136278, "strain": {"value": "PP_006W0D9|Chile-9717869|Chile/1997-XX-XX"}, "accession": "PP_006W0D9", "author": {"author": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D.", "value": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D."}, "date": {"value": "1997-XX-XX"}, "abbr_authors": {"value": "Warner et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MT956621.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MT956621.1"}, "PPX_accession": {"value": "PP_006W0D9.1", "url": "https://pathoplexus.org/seq/PP_006W0D9.1"}, "institution": {"value": "Public Health Agency of Canada, Special Pathogens"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2021-02-27"}, "host": {"value": "mice and others"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 6563}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["G576A", "C5517A", "A6535G", "C6553A", "A6554C"], "RdRp": ["V181I", "P1828T"]}, "labels": {"aa": "RdRp: V181I, P1828T"}}}, {"name": "NODE_0000018", "node_attrs": {"div": 0.135969, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0E7|Chile-9717869|nan/XXXX-XX-XX", "node_attrs": {"div": 0.13597, "strain": {"value": "PP_006W0E7|Chile-9717869|nan/XXXX-XX-XX"}, "accession": "PP_006W0E7", "author": {"author": "Bohlman, M. C.; Borucki, M.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; St Jeor, S.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B.", "value": "Bohlman, M. C.; Borucki, M.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; St Jeor, S.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Bohlman et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "NC_003468.2", "url": "https://www.ncbi.nlm.nih.gov/nuccore/NC_003468.2"}, "PPX_accession": {"value": "PP_006W0E7.1", "url": "https://pathoplexus.org/seq/PP_006W0E7.1"}, "institution": {"value": "National Center for Biotechnology Information, NIH"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2000-10-10"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 6562}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VNZG|Chile-9717869|nan/XXXX-XX-XX", "node_attrs": {"div": 0.13597, "strain": {"value": "PP_006VNZG|Chile-9717869|nan/XXXX-XX-XX"}, "accession": "PP_006VNZG", "author": {"author": "Bohlman, M. C.; Borucki, M. K.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; Rowe, J. E.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B.", "value": "Bohlman, M. C.; Borucki, M. K.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; Rowe, J. E.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Bohlman et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "AF291704.5", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF291704.5"}, "PPX_accession": {"value": "PP_006VNZG.1", "url": "https://pathoplexus.org/seq/PP_006VNZG.1"}, "institution": {"value": "University of Nevada-Reno, Microbiology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2000-10-10"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 6562}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000019", "node_attrs": {"div": 0.131032, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C74T", "C131T", "G149A", "C155T", "A218G", "A296G", "A302G", "T329C", "C347T", "G386A", "T476C", "T488C", "T653A", "G659A", "T668C", "C699T", "T710C", "T869C", "A926G", "G1130A", "A1169G", "T1211C", "A1229G", "T1508C", "G1511T", "C1657T", "A1658G", "T1745C", "G1892A", "T1907C", "A1988G", "T2204C", "A2306G", "G2426A", "T2439C", "G2444A", "C2492T", "T2540C", "G2585A", "G2600A", "A2618G", "T2684C", "T2751C", "T2807C", "G2846A", "C2957A", "T3089C", "T3155C", "C3203T", "G3287A", "G3341A", "C3482T", "T3500C", "T3536C", "A3728G", "G3863A", "T3944A", "G3953A", "A4100G", "T4250C", "A4361G", "T4412C", "G4553T", "G4583A", "C4629T", "A4655G", "A4670G", "A4679G", "A4721G", "A4775G", "T4976C", "T5057G", "A5165G", "T5247C", "A5315G", "C5334T", "C5489T", "T5558G", "T5702C", "G5999A", "A6044G", "A6098G", "A6113G", "A6360G", "A6372G", "A6386G", "A6513G"], "RdRp": ["A541V", "D1303E", "I2109V", "T2113A"]}, "labels": {"aa": "RdRp: A541V, D1303E, I2109V, T2113A"}}, "children": [{"name": "PP_006W0AF|ARCH14/NRC1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.157264, "strain": {"value": "PP_006W0AF|ARCH14/NRC1|nan/XXXX-XX-XX"}, "accession": "PP_006W0AF", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN850096.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850096.1"}, "PPX_accession": {"value": "PP_006W0AF.1", "url": "https://pathoplexus.org/seq/PP_006W0AF.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 6531}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["G119A", "C137T", "C219T", "T338C", "A341G", "T353C", "C390A", "T398C", "A422G", "G482A", "C503T", "C566T", "G581A", "G635A", "G701A", "A704G", "G737A", "C750A", "T782C", "A794G", "A797G", "G853C", "A866G", "G875A", "G986A", "A1046T", "A1115G", "A1130T", "T1172C", "C1178T", "A1184G", "T1199C", "A1223G", "T1247C", "T1265C", "C1277T", "G1348A", "A1370T", "A1373G", "T1424C", "T1520C", "A1589G", "A1601G", "C1622T", "T1637C", "T1823C", "C1862T", "G1877T", "C1913T", "T1922C", "G1946A", "T1952C", "A1967G", "A2012G", "C2078T", "G2120A", "C2123T", "T2159C", "A2171G", "C2360T", "A2369G", "T2393C", "A2408G", "G2411A", "T2501C", "C2516T", "G2666A", "A2669G", "A2672G", "A2699G", "A2735G", "T2771C", "T2816C", "T2879C", "A2882G", "A2936G", "A2963G", "C3110T", "A3140G", "A3190G", "T3191C", "A3200G", "T3242C", "A3257G", "A3329G", "T3335C", "A3380T", "A3473G", "A3548G", "T3551C", "T3615C", "C3641T", "T3698C", "G3749A", "T3770C", "A3848G", "T3926C", "A4001G", "C4013T", "T4103A", "T4106C", "G4139A", "T4242C", "T4259C", "T4277C", "C4358T", "A4433G", "A4493G", "A4520G", "T4550C", "G4556A", "T4559C", "C4575T", "T4577A", "A4580C", "C4619T", "A4643G", "A4727G", "T4826C", "C4934T", "A4982G", "A4991T", "A5043C", "A5147G", "C5195T", "G5300A", "A5303G", "T5306C", "C5396A", "G5417A", "A5429T", "G5453A", "G5462A", "G5627A", "G5654A", "A5708G", "C5735T", "T5738C", "C5759T", "T5828C", "T5835C", "A5846T", "A5888C", "T5906A", "G5930A", "G6053A", "G6056A", "G6092A", "A6137G", "A6140G", "A6161G", "C6254T", "T6291C", "G6365A", "A6425G", "C6428T", "T6473C"], "RdRp": ["S273T", "S438N", "N1052S", "H1356Q", "S1440N"]}, "labels": {"aa": "RdRp: S273T, S438N, N1052S, H1356Q, S1440N"}}}, {"name": "NODE_0000020", "node_attrs": {"div": 0.140357, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T297C", "T326C", "A686G", "C758T", "A860G", "T865C", "C884T", "A893G", "A899G", "A944G", "G1040A", "C1146T", "G1148A", "T1418G", "T1529C", "A1634G", "C1697T", "C1751T", "C1859T", "C1871A", "A1883G", "A2039G", "A2090C", "C2114T", "G2373A", "T2390C", "C2528T", "A2561G", "G2579A", "T2978C", "C3023T", "A3038G", "A3236G", "G3479A", "C3602A", "G3608A", "G3806A", "A4190G", "T4217C", "A4244G", "A4265G", "A4268G", "T4349C", "A4517G", "T4634C", "G4856A", "A4949G", "G5012A", "A5090G", "A5284G", "G5588A", "A5606G", "G5723A", "G5831A", "C5861T", "T5975C", "T5987C", "G6107A", "C6179T"], "RdRp": ["L277S", "D780N", "K1750R"]}, "labels": {"aa": "RdRp: L277S, D780N, K1750R"}}, "children": [{"name": "NODE_0000021", "node_attrs": {"div": 0.148884, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A374G", "A749G", "G935A", "A1082G", "A1226G", "A1239G", "T1566C", "G1616A", "C1622T", "G1649A", "T1709C", "G1766A", "C1817T", "A1973G", "A2258G", "A2345G", "A2423G", "A2483G", "A3065G", "G3215A", "G3302A", "C3305T", "A3488G", "A3569G", "T3629C", "C3668T", "T3881C", "G3896A", "T3903C", "T4010C", "A4354G", "C4508T", "T4577C", "G4625A", "A4661G", "T4860C", "T4910C", "G5028A", "A5072G", "A5105G", "T5123G", "T5246C", "T5252C", "T5270C", "C5309T", "C5423T", "A5615G", "T5969C", "T6206C", "T6281C", "G6335A", "T6434C"], "RdRp": ["I402V", "V1665I"]}, "labels": {"aa": "RdRp: I402V, V1665I"}}, "children": [{"name": "NODE_0000022", "node_attrs": {"div": 0.154966, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G560A", "C566T", "G836A", "G851A", "C1466T", "T1657C", "G1658A", "C1745A", "T1949C", "G2252A", "A2447G", "T2654C", "A2672G", "C2726T", "G2930A", "T2981C", "T3039C", "A3221G", "T3266C", "G3509A", "G3752A", "A4181G", "C4463T", "A4766G", "C4821T", "C4835T", "A5009G", "T5231C", "G5597A", "T5636C", "G5639A", "C5735T", "T6251C", "T6449C", "G6455A"], "RdRp": ["V541A"]}, "labels": {"aa": "RdRp: V541A"}}, "children": [{"name": "NODE_0000023", "node_attrs": {"div": 0.165623, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T216C", "A314G", "A389G", "G407A", "C446T", "G482A", "A506G", "T545C", "A560T", "A764G", "C776T", "G779A", "C821T", "A935G", "G1061A", "T1088C", "T1094C", "C1097T", "G1229A", "C1385T", "G1388A", "T1400C", "T1424C", "C1433T", "G1439A", "C1475T", "A1616G", "A1739G", "G1985A", "A2057G", "T2132C", "C2165T", "A2222G", "G2291A", "A2498G", "G2549T", "C2621T", "A2804G", "T3024C", "G3458A", "C3606T", "C3701T", "T3923C", "G3995A", "C4010T", "C4013T", "T4088C", "T4106C", "A4166G", "C4217T", "G4244A", "T4511A", "G4655A", "G4742A", "T4925C", "T4994C", "T5039C", "A5259C", "A5360G", "G5615A", "A5657G", "A5744G", "C5759T", "T5948C", "T5957C", "C5969T", "C5987T", "C6248T", "T6359C"]}}, "children": [{"name": "PP_006VQHC|CHI-7913|Chile/XXXX-XX-XX", "node_attrs": {"div": 0.169481, "strain": {"value": "PP_006VQHC|CHI-7913|Chile/XXXX-XX-XX"}, "accession": "PP_006VQHC", "author": {"author": "Tischler, N. D.; Fernandez, J.; Muller, I.; Martinez, R.; Galeno, H.; Villagra, E.; Mora, J.; Ramirez, E.; Rosemblatt, M.; Valenzuela, P. D.; Mueller, I.; Valenzuela, P. D. T.", "value": "Tischler, N. D.; Fernandez, J.; Muller, I.; Martinez, R.; Galeno, H.; Villagra, E.; Mora, J.; Ramirez, E.; Rosemblatt, M.; Valenzuela, P. D.; Mueller, I.; Valenzuela, P. D. T."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tischler et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "AY228239.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AY228239.1"}, "PPX_accession": {"value": "PP_006VQHC.1", "url": "https://pathoplexus.org/seq/PP_006VQHC.1"}, "institution": {"value": "Fundacion Ciencia para la Vida, Departamento de Desarrollo e Investigacion"}, "totalAmbiguousNucs": {"value": 1}, "date_released": {"value": "2003-05-01"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 6466}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["C47T", "A474C", "G657A", "T846C", "T991C", "A1838C", "T2100C", "A2534G", "T2543C", "A2697G", "T3274C", "A3401T", "A3448G", "T3470C", "T3681C", "T4067C", "A4745G", "A5573G", "G5631A", "A5734T", "A5865G", "G6044A", "C6051T", "A6358G", "T6427C"], "RdRp": ["N147H", "E208K", "F271L", "L319P", "R888G", "V1080A", "E1138G", "S1216P", "D1866N", "N1900I", "N1944D", "D2108G", "F2131S"]}, "labels": {"aa": "RdRp: N147H, E208K, F271L, L319P, R888G, V1080A, E1138G, S1216P, D1866N, N1900I, N1944D, D2108G, F2131S"}}}, {"name": "NODE_0000024", "node_attrs": {"div": 0.165808, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A4988G"]}}, "children": [{"name": "PP_006W2HY|CHI-7913|Chile/1999-XX-XX", "node_attrs": {"div": 0.165809, "strain": {"value": "PP_006W2HY|CHI-7913|Chile/1999-XX-XX"}, "accession": "PP_006W2HY", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "date": {"value": "1999-XX-XX"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PV808472.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808472.1"}, "PPX_accession": {"value": "PP_006W2HY.1", "url": "https://pathoplexus.org/seq/PP_006W2HY.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 6561}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0CB|CHI-7913|Chile/1999-XX-XX", "node_attrs": {"div": 0.165809, "strain": {"value": "PP_006W0CB|CHI-7913|Chile/1999-XX-XX"}, "accession": "PP_006W0CB", "author": {"author": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D.", "value": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D."}, "date": {"value": "1999-XX-XX"}, "abbr_authors": {"value": "Warner et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MT956620.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MT956620.1"}, "PPX_accession": {"value": "PP_006W0CB.1", "url": "https://pathoplexus.org/seq/PP_006W0CB.1"}, "institution": {"value": "Public Health Agency of Canada, Special Pathogens"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2021-02-27"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 6466}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000025", "node_attrs": {"div": 0.155819, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G803A", "G2531A", "C4634T", "A5126G", "G5852A"]}}, "children": [{"name": "PP_006VZ3Y|NRC-2/97_06/01/1996|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169445, "strain": {"value": "PP_006VZ3Y|NRC-2/97_06/01/1996|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ3Y", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258157.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258157.1"}, "PPX_accession": {"value": "PP_006VZ3Y.1", "url": "https://pathoplexus.org/seq/PP_006VZ3Y.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6542}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["T122C", "A167G", "G218A", "C230T", "A293G", "C311T", "C329T", "T347C", "A638G", "T804C", "A809G", "C821T", "G899A", "G926A", "A992G", "C1178T", "C1358T", "T1389C", "A1397G", "C1433T", "C1475T", "T1517C", "A1572G", "C1679T", "T1740C", "G1763A", "T1802C", "T1823C", "G2258A", "A2303G", "G2306A", "G2333A", "A2366T", "C2432T", "A2450G", "C2474T", "T2543C", "T2603C", "A2690G", "C3089T", "C3110T", "T3285C", "A3377G", "T3389C", "G3404T", "G3581A", "T3603C", "A3656T", "A3716G", "G3728A", "C3797T", "T3854C", "C3903T", "A3905G", "T3971C", "T4034C", "G4118A", "A4164C", "A4238G", "A4286G", "C4289T", "A4418G", "T4424C", "T4574C", "T4604A", "C4619T", "T4674C", "C4929T", "T4994C", "G5123T", "G5183A", "G5198A", "T5279C", "T5471C", "T5604C", "G5654A", "A5657G", "A5712G", "C5759T", "T5843C", "G5942A", "T6089A", "A6134G", "T6164C", "A6228C", "C6233T", "A6299G", "T6377C"], "RdRp": ["F257L", "I513V", "Q1123H", "I1893V"]}, "labels": {"aa": "RdRp: F257L, I513V, Q1123H, I1893V"}}}, {"name": "NODE_0000026", "node_attrs": {"div": 0.158822, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G701A", "C738T", "A1010G", "C1508T", "A1649G", "T2468G", "C2774T", "A2975T", "T3218C", "G3269A", "A3635G", "T3960C", "A5387G", "C5411T", "A5588G", "C5747T", "G6116A", "C6347T", "C6428T"]}}, "children": [{"name": "PP_006VZ6S|NRC-5/18_06/01/2018|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.172584, "strain": {"value": "PP_006VZ6S|NRC-5/18_06/01/2018|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ6S", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258160.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258160.1"}, "PPX_accession": {"value": "PP_006VZ6S.1", "url": "https://pathoplexus.org/seq/PP_006VZ6S.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6539}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["C137T", "T215C", "C297T", "G374C", "A464G", "G467A", "A515C", "C591T", "G644A", "T680C", "G749A", "A802G", "G853A", "A866G", "G875A", "G893A", "G929A", "G944T", "A995G", "T1058C", "A1103G", "A1289G", "G1344A", "C1709T", "C1757T", "C1907T", "T2063C", "T2087C", "C2090T", "A2186G", "G2306A", "C2390T", "C2412T", "C2439T", "T2453C", "G2483A", "G2568T", "C2654T", "T2726C", "G2747A", "G2831A", "C3035T", "G3221A", "A3257G", "T3470C", "G3728A", "A3731G", "C3740T", "C3782T", "T3785C", "A3815G", "G3929A", "T4028C", "C4184T", "C4211T", "C4214T", "G4235A", "G4244A", "T4346C", "C4412T", "T4550C", "C4562T", "A4622G", "G4770A", "G4931A", "G4949A", "T5069C", "T5081C", "A5144G", "G5165A", "C5222T", "C5231T", "C5247T", "A5414G", "C5600T", "A5639G", "C5690T", "G5816A", "C5924T", "A5999G", "A6020G", "C6051T", "T6185C", "G6212A", "G6398A", "T6443C"], "RdRp": ["K256R", "S273N", "A437T", "A845S", "V1579I"]}, "labels": {"aa": "RdRp: K256R, S273N, A437T, A845S, V1579I"}}}, {"name": "NODE_0000027", "node_attrs": {"div": 0.169716, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C47T", "G266A", "A320G", "T348C", "G482A", "A740G", "A764G", "T839C", "T870C", "T915C", "T959C", "C971T", "T1067C", "G1133A", "A1163G", "T1247C", "T1319G", "G1388A", "T1571C", "A1580G", "C1679T", "C1979T", "A2003T", "T2114C", "C2123A", "A2357G", "A2414G", "C2474T", "C2486T", "T2504C", "T2528G", "T2661G", "T2720C", "T2723C", "A3008G", "T3023C", "G3236T", "T3290C", "A3368G", "G3458A", "C3486T", "A3617G", "C3641T", "A3719G", "G3803A", "T3854C", "T4088C", "C4349T", "A4370G", "G4502A", "G4517A", "T4694A", "C4722T", "G4742A", "T4808C", "C4910T", "T5054C", "G5090A", "C5093T", "A5360G", "G5558A", "T5798C", "G5810A", "T5903C", "C6219T", "T6291C", "A6305G", "A6314C", "A6320T", "C6467T"], "RdRp": ["S876A"]}, "labels": {"aa": "RdRp: S876A"}}, "children": [{"name": "PP_006VX9N|ANDV LS-CH-2016|Switzerland/2016-12-26", "node_attrs": {"div": 0.17274, "strain": {"value": "PP_006VX9N|ANDV LS-CH-2016|Switzerland/2016-12-26"}, "accession": "PP_006VX9N", "author": {"author": "Beuret, C. M.; Siegrist, D.", "value": "Beuret, C. M.; Siegrist, D."}, "date": {"value": "2016-12-26"}, "abbr_authors": {"value": "Beuret et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "KY659431.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/KY659431.1"}, "PPX_accession": {"value": "PP_006VX9N.1", "url": "https://pathoplexus.org/seq/PP_006VX9N.1"}, "institution": {"value": "Spiez Laboratory, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-01-29"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Switzerland"}, "region": {"value": "Europe"}, "length": {"value": 6470}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["G1010A", "T1361A", "T1364C", "C1385T", "T1400C", "T1424C", "C1433T", "G1439A", "C1475T", "T1508C", "C3881T", "A3885T", "T4641C", "A4666G", "T4875C", "T4936A", "T5860C", "T6274A", "T6277A"], "RdRp": ["M1284L", "Y1544C", "I1634K", "I1942T", "L2080Q", "L2081Q"]}, "labels": {"aa": "RdRp: M1284L, Y1544C, I1634K, I1942T, L2080Q, L2081Q"}}}, {"name": "NODE_0000028", "node_attrs": {"div": 0.169947, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T1389C"]}}, "children": [{"name": "PP_006W0X6|ANDV-CH-LS-2016|Switzerland/2016-XX-XX", "node_attrs": {"div": 0.170116, "strain": {"value": "PP_006W0X6|ANDV-CH-LS-2016|Switzerland/2016-XX-XX"}, "accession": "PP_006W0X6", "author": {"author": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N.", "value": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N."}, "date": {"value": "2016-XX-XX"}, "abbr_authors": {"value": "Zuest et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "OR405523.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR405523.1"}, "PPX_accession": {"value": "PP_006W0X6.1", "url": "https://pathoplexus.org/seq/PP_006W0X6.1"}, "institution": {"value": "Spiez Laboratory, Biology Department"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-02"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Switzerland"}, "region": {"value": "Europe"}, "length": {"value": 5924}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["G3940A"], "RdRp": ["R1302K"]}, "labels": {"aa": "RdRp: R1302K"}}}, {"name": "PP_006W0W8|ANDV-CH-LS-2022|Switzerland/2022-XX-XX", "node_attrs": {"div": 0.169948, "strain": {"value": "PP_006W0W8|ANDV-CH-LS-2022|Switzerland/2022-XX-XX"}, "accession": "PP_006W0W8", "author": {"author": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N.", "value": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N."}, "date": {"value": "2022-XX-XX"}, "abbr_authors": {"value": "Zuest et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "OR405522.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR405522.1"}, "PPX_accession": {"value": "PP_006W0W8.1", "url": "https://pathoplexus.org/seq/PP_006W0W8.1"}, "institution": {"value": "Spiez Laboratory, Biology Department"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-02"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Switzerland"}, "region": {"value": "Europe"}, "length": {"value": 6244}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}, {"name": "NODE_0000029", "node_attrs": {"div": 0.156649, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C147T", "T182C", "T215C", "A233C", "T359C", "T458C", "A618C", "C1328T", "A1379G", "T1382C", "G1736A", "A1781G", "C1793T", "A1841G", "T1910C", "G2120T", "C2165T", "C2360T", "A2408G", "G2753A", "C2774T", "G2858A", "C3032T", "T3191C", "C3422T", "A3530T", "C3536T", "A3665G", "T3965C", "C4385T", "G4487A", "A4700G", "G4721A", "A4889G", "C4929T", "C4976T", "A5189G", "A5204C", "G5327A", "A5345G", "C5406A", "G5627A", "C5702T", "T5711C", "T5804C", "G6029A", "G6113A", "T6290C", "C6347T", "G6398A"], "RdRp": ["R144K"]}, "labels": {"aa": "RdRp: R144K"}}, "children": [{"name": "NODE_0000030", "node_attrs": {"div": 0.165274, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C137T", "C428T", "A434G", "T452C", "G466A", "C539T", "G920A", "T1067C", "C1307T", "T1436C", "T1706C", "A1991T", "T2183C", "T2210C", "A2246G", "T2276C", "C2328T", "T2363C", "T2405G", "C2547T", "G2651A", "A2690G", "A2780G", "T2783C", "C2918T", "C3188T", "A3398G", "T3560C", "C3629T", "A3692G", "T3722A", "C3881T", "G3884A", "T4103C", "T4346C", "T4508C", "C4667T", "C4722T", "T5111C", "A5156G", "T5159C", "A5201G", "T5213C", "T5228C", "T5237C", "G5261A", "C5294T", "C5534T", "C5735T", "C5997T", "G6143A", "A6299G", "A6374T", "T6450C", "A6482C"]}}, "children": [{"name": "NODE_0000031", "node_attrs": {"div": 0.170846, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C446T", "C458T", "C488T", "A674G", "C713T", "A1148G", "G1274A", "A1310G", "C1661T", "A1739G", "G1776T", "C1910T", "G1964A", "A2243G", "A2336G", "C2390T", "G2402A", "A2579G", "A2612G", "T2720C", "C2987T", "G3236A", "G3272A", "T3638C", "T4385A", "G4778A", "G5018A", "G5057A", "G5072A", "C5111G", "A5144G", "C5247T", "A5519G", "A6134G", "C6200T", "T6257C"], "RdRp": ["A581S"]}, "labels": {"aa": "RdRp: A581S"}}, "children": [{"name": "PP_006W2F3|136|Chile/2024-06-27", "node_attrs": {"div": 0.170847, "strain": {"value": "PP_006W2F3|136|Chile/2024-06-27"}, "accession": "PP_006W2F3", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "date": {"value": "2024-06-27"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PV796318.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV796318.1"}, "PPX_accession": {"value": "PP_006W2F3.1", "url": "https://pathoplexus.org/seq/PP_006W2F3.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Chile"}, "division": {"value": "Los Rios CL"}, "region": {"value": "South America"}, "length": {"value": 6556}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000032", "node_attrs": {"div": 0.170847, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2KU|CHI-Hu13724_P2|Chile/2024-07-30", "node_attrs": {"div": 0.170847, "strain": {"value": "PP_006W2KU|CHI-Hu13724_P2|Chile/2024-07-30"}, "accession": "PP_006W2KU", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "date": {"value": "2024-07-30"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PV808478.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808478.1"}, "PPX_accession": {"value": "PP_006W2KU.1", "url": "https://pathoplexus.org/seq/PP_006W2KU.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 6555}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000033", "node_attrs": {"div": 0.170847, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2G1|137|Chile/2024-06-27", "node_attrs": {"div": 0.170847, "strain": {"value": "PP_006W2G1|137|Chile/2024-06-27"}, "accession": "PP_006W2G1", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "date": {"value": "2024-06-27"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PV808469.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808469.1"}, "PPX_accession": {"value": "PP_006W2G1.1", "url": "https://pathoplexus.org/seq/PP_006W2G1.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Chile"}, "division": {"value": "Los Rios CL"}, "region": {"value": "South America"}, "length": {"value": 6549}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W2JW|CHI-Hu13724_P1|Chile/2024-07-24", "node_attrs": {"div": 0.170847, "strain": {"value": "PP_006W2JW|CHI-Hu13724_P1|Chile/2024-07-24"}, "accession": "PP_006W2JW", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "date": {"value": "2024-07-24"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PV808475.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808475.1"}, "PPX_accession": {"value": "PP_006W2JW.1", "url": "https://pathoplexus.org/seq/PP_006W2JW.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 6562}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000034", "node_attrs": {"div": 0.168361, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T155C", "T269C", "G470A", "A542G", "G563A", "G803A", "T989C", "A1187C", "C1358T", "C1470T", "C1733T", "G1946A", "A2072G", "T2429C", "A3722G", "G5045A", "C5195T", "T5231C", "A5285G"]}}, "children": [{"name": "PP_006W0QL|Andes/ARG_p3|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.168362, "strain": {"value": "PP_006W0QL|Andes/ARG_p3|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0QL", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "OP555732.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555732.1"}, "PPX_accession": {"value": "PP_006W0QL.1", "url": "https://pathoplexus.org/seq/PP_006W0QL.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6544}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000035", "node_attrs": {"div": 0.168671, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C3560T", "A3920G"], "RdRp": ["I1295M"]}, "labels": {"aa": "RdRp: I1295M"}}, "children": [{"name": "PP_006W0SG|Andes/ARG_p19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.168826, "strain": {"value": "PP_006W0SG|Andes/ARG_p19|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0SG", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "OP555734.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555734.1"}, "PPX_accession": {"value": "PP_006W0SG.1", "url": "https://pathoplexus.org/seq/PP_006W0SG.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6475}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["C5058T"], "RdRp": ["P1675S"]}, "labels": {"aa": "RdRp: P1675S"}}}, {"name": "NODE_0000036", "node_attrs": {"div": 0.168672, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0TE|Andes/ARG-M.a.|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.168673, "strain": {"value": "PP_006W0TE|Andes/ARG-M.a.|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0TE", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "OP555735.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555735.1"}, "PPX_accession": {"value": "PP_006W0TE.1", "url": "https://pathoplexus.org/seq/PP_006W0TE.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "host": {"value": "Syrian golden hamster; Syrian golden hamsters; Syrian hamster; golden hamster"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6462}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["T28G"]}}}, {"name": "PP_006W0RJ|Andes/ARG_p9|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.168673, "strain": {"value": "PP_006W0RJ|Andes/ARG_p9|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0RJ", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "OP555733.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555733.1"}, "PPX_accession": {"value": "PP_006W0RJ.1", "url": "https://pathoplexus.org/seq/PP_006W0RJ.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6475}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000037", "node_attrs": {"div": 0.162491, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G200A", "T278C", "G404A", "T557C", "G1142A", "C1512T", "C1679T", "C2474T", "T2543C", "C2583T", "A2699G", "A2759C", "A2765G", "T2894C", "A3008G", "T3053C", "C3155T", "T3167C", "G3236A", "T3242C", "A3281G", "T3357C", "A3704G", "C3845T", "C4211T", "A4472G", "A4544G", "C4712T", "C4910T", "T4994C", "A5126G", "T5441C", "C5864T", "T5948C", "T6179C", "A6284G", "G6360A", "C6434T"], "RdRp": ["V2109I"]}, "labels": {"aa": "RdRp: V2109I"}}, "children": [{"name": "NODE_0000038", "node_attrs": {"div": 0.16756, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A243G", "T371C", "G466A", "G1061A", "T1094C", "A1118G", "A1205G", "A1526G", "A1562G", "C1661T", "T1829C", "A1967G", "T2192C", "A2201T", "A3221G", "T3371C", "A3779G", "T3866C", "A4220G", "G4322A", "T4391C", "C4463T", "A4844G", "A4991G", "C5225T", "G5615A", "A5693G", "T5891A", "T5900C", "G6098A", "C6101T", "C6476T", "G6533A"], "RdRp": ["I70V"]}, "labels": {"aa": "RdRp: I70V"}}, "children": [{"name": "PP_006VZ5U|NRC-4/18_06/01/2018|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.167561, "strain": {"value": "PP_006VZ5U|NRC-4/18_06/01/2018|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ5U", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258159.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258159.1"}, "PPX_accession": {"value": "PP_006VZ5U.1", "url": "https://pathoplexus.org/seq/PP_006VZ5U.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6545}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZ4W|NRC-3/18_06/01/1997|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.167561, "strain": {"value": "PP_006VZ4W|NRC-3/18_06/01/1997|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ4W", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258158.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258158.1"}, "PPX_accession": {"value": "PP_006VZ4W.1", "url": "https://pathoplexus.org/seq/PP_006VZ4W.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6540}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000039", "node_attrs": {"div": 0.170086, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {"nuc": ["G62A", "T68G", "T332C", "A461G", "C488T", "A650G", "A704G", "A842G", "G968A", "C1211T", "A1223G", "A1283G", "C1382T", "T1740C", "C1745T", "C1923T", "G1961A", "G2411A", "A2414G", "A2441G", "G2483A", "A2627T", "G2927A", "T3125C", "T3170C", "T3263C", "T3437A", "G3521A", "T3560C", "G3581A", "A3716G", "T3833C", "A3848G", "T4427C", "G4556A", "T4751C", "G4787A", "G4889A", "C5195T", "C5270T", "A5669T", "G5687A", "T5777C", "T5835C", "T6173C", "G6212A", "C6219T", "T6302C", "C6428T"], "RdRp": ["K144R"]}, "labels": {"aa": "RdRp: K144R", "outbreak": "2026-Hondius"}}, "children": [{"name": "PP_006WDKH|PP_006WDKH|South Africa/2026-04-26", "node_attrs": {"div": 0.170088, "strain": {"value": "PP_006WDKH|PP_006WDKH|South Africa/2026-04-26"}, "accession": "PP_006WDKH", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "date": {"value": "2026-04-26"}, "abbr_authors": {"value": "Weyer et al."}, "outbreak": {"value": "2026-Hondius"}, "PPX_accession": {"value": "PP_006WDKH.1", "url": "https://pathoplexus.org/seq/PP_006WDKH.1"}, "institution": {"value": "National Institute of Communicable Diseases"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-12"}, "host": {"value": "human"}, "restrictedUntil": {"value": "2027-05-12"}, "country": {"value": "South Africa"}, "region": {"value": "Africa"}, "length": {"value": 6478}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}}, "branch_attrs": {"mutations": {"nuc": ["A10G"]}}}, {"name": "NODE_0000040", "node_attrs": {"div": 0.17024, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {"nuc": ["A3437G"]}}, "children": [{"name": "NODE_0000041", "node_attrs": {"div": 0.170241, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006WANE|PP_006WANE|South Africa/2026-05-02", "node_attrs": {"div": 0.170242, "strain": {"value": "PP_006WANE|PP_006WANE|South Africa/2026-05-02"}, "accession": "PP_006WANE", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "date": {"value": "2026-05-02"}, "abbr_authors": {"value": "Weyer et al."}, "outbreak": {"value": "2026-Hondius"}, "PPX_accession": {"value": "PP_006WANE.2", "url": "https://pathoplexus.org/seq/PP_006WANE.2"}, "institution": {"value": "National Institute of Communicable Diseases"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-11"}, "host": {"value": "human"}, "restrictedUntil": {"value": "2027-05-11"}, "country": {"value": "South Africa"}, "region": {"value": "Africa"}, "length": {"value": 6528}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006WDJK|PP_006WDJK|South Africa/2026-05-02", "node_attrs": {"div": 0.170242, "strain": {"value": "PP_006WDJK|PP_006WDJK|South Africa/2026-05-02"}, "accession": "PP_006WDJK", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "date": {"value": "2026-05-02"}, "abbr_authors": {"value": "Weyer et al."}, "outbreak": {"value": "2026-Hondius"}, "PPX_accession": {"value": "PP_006WDJK.1", "url": "https://pathoplexus.org/seq/PP_006WDJK.1"}, "institution": {"value": "National Institute of Communicable Diseases"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-12"}, "host": {"value": "human"}, "restrictedUntil": {"value": "2027-05-12"}, "country": {"value": "South Africa"}, "region": {"value": "Africa"}, "length": {"value": 6528}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000042", "node_attrs": {"div": 0.170241, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006WBLH|ANDV/Switzerland/Hu-3337/2026|Switzerland/2026-05-04", "node_attrs": {"div": 0.170242, "strain": {"value": "PP_006WBLH|ANDV/Switzerland/Hu-3337/2026|Switzerland/2026-05-04"}, "accession": "PP_006WBLH", "author": {"author": "Bloemberg, G.; Chudzinski, V.; Cordey, S.; Huber, M.; Laubscher, F.; Perez-Rodriguez, F.-J.; Pichler, I.; Schibler, M.; Thomasson, V.; Ziltener, G.", "value": "Bloemberg, G.; Chudzinski, V.; Cordey, S.; Huber, M.; Laubscher, F.; Perez-Rodriguez, F.-J.; Pichler, I.; Schibler, M.; Thomasson, V.; Ziltener, G."}, "date": {"value": "2026-05-04"}, "abbr_authors": {"value": "Bloemberg et al."}, "outbreak": {"value": "2026-Hondius"}, "INSDC_accession": {"value": "PZ385161.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PZ385161.1"}, "PPX_accession": {"value": "PP_006WBLH.1", "url": "https://pathoplexus.org/seq/PP_006WBLH.1"}, "institution": {"value": "University Hospitals of Geneva, Laboratory of Virology"}, "totalAmbiguousNucs": {"value": 1}, "date_released": {"value": "2026-05-11"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Switzerland"}, "region": {"value": "Europe"}, "length": {"value": 6561}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000043", "node_attrs": {"div": 0.170242, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W3U9|PP_006W3U9|Netherlands/2026-05-06", "node_attrs": {"div": 0.170243, "strain": {"value": "PP_006W3U9|PP_006W3U9|Netherlands/2026-05-06"}, "accession": "PP_006W3U9", "author": {"author": "Oude Munnink, B. B.; Nieuwenhuijsse, D.; van der Boom, S.; Zaeck, L.; Boter, M.; Cassidy, H.; Schuele, L.; Molenkamp, R.; van der Eijk, A.; GeurtsvanKessel, C.; Koopmans, M.", "value": "Oude Munnink, B. B.; Nieuwenhuijsse, D.; van der Boom, S.; Zaeck, L.; Boter, M.; Cassidy, H.; Schuele, L.; Molenkamp, R.; van der Eijk, A.; GeurtsvanKessel, C.; Koopmans, M."}, "date": {"value": "2026-05-06"}, "abbr_authors": {"value": "Oude Munnink et al."}, "outbreak": {"value": "2026-Hondius"}, "PPX_accession": {"value": "PP_006W3U9.1", "url": "https://pathoplexus.org/seq/PP_006W3U9.1"}, "institution": {"value": "ErasmusMC"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-10"}, "host": {"value": "human"}, "restrictedUntil": {"value": "2027-05-10"}, "country": {"value": "Netherlands"}, "region": {"value": "Europe"}, "length": {"value": 6456}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W6RC|PP_006W6RC|Netherlands/2026-05-03", "node_attrs": {"div": 0.170243, "strain": {"value": "PP_006W6RC|PP_006W6RC|Netherlands/2026-05-03"}, "accession": "PP_006W6RC", "author": {"author": "Diagne, Moussa Moise; Sankhe, Safietou; Ndiaye, Ndeye Awa; Kane, Mouhamed; Diop, Seynabou M. B. S.; Seye, Seynabou; Fall, Gamou", "value": "Diagne, Moussa Moise; Sankhe, Safietou; Ndiaye, Ndeye Awa; Kane, Mouhamed; Diop, Seynabou M. B. S.; Seye, Seynabou; Fall, Gamou"}, "date": {"value": "2026-05-03"}, "abbr_authors": {"value": "Diagne et al."}, "outbreak": {"value": "2026-Hondius"}, "PPX_accession": {"value": "PP_006W6RC.2", "url": "https://pathoplexus.org/seq/PP_006W6RC.2"}, "institution": {"value": "Institut Pasteur de Dakar"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-11"}, "host": {"value": "human"}, "restrictedUntil": {"value": "2027-05-11"}, "country": {"value": "Netherlands"}, "region": {"value": "Europe"}, "length": {"value": 6456}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}, {"name": "NODE_0000044", "node_attrs": {"div": 0.158996, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G53A", "T173C", "T182C", "T269C", "C329T", "T338C", "A341C", "A425T", "A455G", "A456G", "G509A", "T512G", "G560A", "T626C", "T654C", "G926A", "A1016G", "T1088C", "C1097T", "T1124C", "A1126G", "G1169A", "C1178A", "C1241T", "C1250T", "G1259A", "T1265C", "T1376C", "A1538G", "A1592G", "A1652T", "G1676A", "C1679T", "T1724C", "T1737C", "G1742A", "A1748G", "T1898C", "C1907T", "G1961A", "T1965C", "T2174C", "T2177C", "T2184C", "T2241C", "T2255C", "T2468C", "T2501C", "T2525C", "T2543C", "C2547T", "C2621T", "G2651A", "T2661G", "C2726T", "A2882G", "T2993C", "G3041A", "C3071T", "G3101A", "A3164G", "A3194G", "T3357C", "G3413A", "T3497C", "A3530G", "T3563C", "C3587T", "T3590C", "T3611C", "A3653G", "A3665G", "A3686G", "A3707G", "A3779G", "A3848G", "G3884A", "A3959C", "G4118A", "A4166G", "T4550C", "C4562T", "C4592T", "A4622G", "G4679A", "T4685C", "A4700G", "C4712T", "G4760T", "G4823A", "C4835T", "T4880C", "A4889G", "G4904A", "A4979G", "G4997A", "T5000C", "A5078G", "A5186G", "A5189G", "T5237C", "T5306G", "G5315A", "A5360G", "A5393G", "G5462A", "T5525C", "A5645G", "A5657G", "T5699C", "T5711C", "C5726T", "G5930C", "T5969A", "G6035A", "T6050C", "T6110C", "T6122G", "G6125A", "C6219T", "C6276T", "G6317A", "G6372A", "C6467T"], "RdRp": ["I141V", "N364S", "S876A", "S1440N", "Q1965H", "A2113T"]}, "labels": {"aa": "RdRp: I141V, N364S, S876A, S1440N, Q1965H, A2113T"}}, "children": [{"name": "NODE_0000045", "node_attrs": {"div": 0.164245, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C305T", "A365G", "A469G", "G635A", "G644A", "T857C", "A1482G", "G1514A", "T1727C", "A1841G", "T2024C", "T2036A", "T2633C", "G2666A", "A2888G", "T3125C", "T3170C", "G3194T", "C3275T", "G3632A", "A3704G", "T3935C", "G4100T", "G4139A", "G4625A", "C4640T", "C4722T", "A5048G", "C5177T", "A5258C", "T5369C", "G5417A", "T6423C"], "RdRp": ["K145R", "I483V"]}, "labels": {"aa": "RdRp: K145R, I483V"}}, "children": [{"name": "PP_006W07M|AREB14/P1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.164246, "strain": {"value": "PP_006W07M|AREB14/P1|nan/XXXX-XX-XX"}, "accession": "PP_006W07M", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN850093.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850093.1"}, "PPX_accession": {"value": "PP_006W07M.1", "url": "https://pathoplexus.org/seq/PP_006W07M.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 6464}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000046", "node_attrs": {"div": 0.164554, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G2225A", "C3611T"]}}, "children": [{"name": "PP_006W09H|AREB14/P3|nan/XXXX-XX-XX", "node_attrs": {"div": 0.164555, "strain": {"value": "PP_006W09H|AREB14/P3|nan/XXXX-XX-XX"}, "accession": "PP_006W09H", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN850095.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850095.1"}, "PPX_accession": {"value": "PP_006W09H.1", "url": "https://pathoplexus.org/seq/PP_006W09H.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 6528}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W08K|AREB14/P2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.164555, "strain": {"value": "PP_006W08K|AREB14/P2|nan/XXXX-XX-XX"}, "accession": "PP_006W08K", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN850094.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850094.1"}, "PPX_accession": {"value": "PP_006W08K.1", "url": "https://pathoplexus.org/seq/PP_006W08K.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 6562}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000047", "node_attrs": {"div": 0.159967, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T143C", "T1631C", "T1637C", "G2120A", "T2315C", "G5288A", "T5504C"]}}, "children": [{"name": "NODE_0000048", "node_attrs": {"div": 0.160319, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G1367A", "T2951C"]}}, "children": [{"name": "PP_006W0BD|ARLA17/NRC2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.166265, "strain": {"value": "PP_006W0BD|ARLA17/NRC2|nan/XXXX-XX-XX"}, "accession": "PP_006W0BD", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN850097.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850097.1"}, "PPX_accession": {"value": "PP_006W0BD.1", "url": "https://pathoplexus.org/seq/PP_006W0BD.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 6532}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["A197G", "C488T", "G512A", "C713T", "C776T", "A953T", "A1004G", "A1157G", "A1178G", "C1196T", "C1376T", "T1688C", "C1898T", "A2186G", "C2255T", "A2312C", "A2366G", "C2774T", "A2885G", "C2978T", "C3108T", "A3130G", "C3500A", "T3515A", "C3536T", "C3606T", "A3941G", "A3968G", "T4757C", "A4919G", "C4976T", "G5018A", "A5033G", "A5075C", "C5150T", "T5753C", "G6335A", "G6470A"], "RdRp": ["Q759H", "H1025Y", "E1032G"]}, "labels": {"aa": "RdRp: Q759H, H1025Y, E1032G"}}}, {"name": "PP_006VZ20|Epilink/96_2/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.162626, "strain": {"value": "PP_006VZ20|Epilink/96_2/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ20", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258156.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258156.1"}, "PPX_accession": {"value": "PP_006VZ20.1", "url": "https://pathoplexus.org/seq/PP_006VZ20.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6546}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["C481A", "T569C", "G734A", "G1106A", "A1259G", "T1523C", "G1925T", "T2564C", "C3035T", "A3794G", "A3806G", "G3848A", "T5231C", "G5333A", "C6051T"], "RdRp": ["P149Q"]}, "labels": {"aa": "RdRp: P149Q"}}}]}, {"name": "NODE_0000049", "node_attrs": {"div": 0.16245, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A950G", "T959C", "C1211T", "A1223G", "C1265T", "A1313T", "C1470T", "T1657C", "A2483G", "A4055G", "C4436T", "A4475G", "G4556A", "T5450C", "T5792C", "A5996G"], "RdRp": ["V541A"]}, "labels": {"aa": "RdRp: V541A"}}, "children": [{"name": "PP_006VZ7Q|NRC-6/18_05/21/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165893, "strain": {"value": "PP_006VZ7Q|NRC-6/18_05/21/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ7Q", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258161.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258161.1"}, "PPX_accession": {"value": "PP_006VZ7Q.1", "url": "https://pathoplexus.org/seq/PP_006VZ7Q.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6548}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["A167G", "G221A", "C344T", "C481A", "T569C", "G734A", "G1126A", "T2148C", "C2501T", "T2565C", "G2822A", "T2954C", "A3806G", "G3848A", "A4130G", "T4925A", "A4982G", "C4986T", "A5693G", "T6149C", "T6450C", "C6491T"], "RdRp": ["P149Q", "S364N"]}, "labels": {"aa": "RdRp: P149Q, S364N"}}}, {"name": "NODE_0000050", "node_attrs": {"div": 0.16538, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A86G", "G89A", "C147T", "C269T", "T680C", "A1001C", "A1139G", "A1178G", "A2120G", "C2123T", "C2543T", "A2846G", "T4172C", "T4592C", "G4670A", "T5555C", "C6191T", "G6398A", "G6455A"]}}, "children": [{"name": "PP_006VZLX|Epuyen/18-19_Patient_22_1/1/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165535, "strain": {"value": "PP_006VZLX|Epuyen/18-19_Patient_22_1/1/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZLX", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258174.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258174.1"}, "PPX_accession": {"value": "PP_006VZLX.1", "url": "https://pathoplexus.org/seq/PP_006VZLX.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6546}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["T1688C"]}}}, {"name": "NODE_0000051", "node_attrs": {"div": 0.165381, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ8N|Epuyen/18-19_Patient_10_12/10/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165382, "strain": {"value": "PP_006VZ8N|Epuyen/18-19_Patient_10_12/10/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ8N", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258162.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258162.1"}, "PPX_accession": {"value": "PP_006VZ8N.1", "url": "https://pathoplexus.org/seq/PP_006VZ8N.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6528}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000052", "node_attrs": {"div": 0.165382, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZCE|Epuyen/18-19_Patient_14_12/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165383, "strain": {"value": "PP_006VZCE|Epuyen/18-19_Patient_14_12/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZCE", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258166.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258166.1"}, "PPX_accession": {"value": "PP_006VZCE.1", "url": "https://pathoplexus.org/seq/PP_006VZCE.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6543}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000053", "node_attrs": {"div": 0.165383, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000054", "node_attrs": {"div": 0.165384, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZVD|Epuyen/18-19_Patient_4_11/27/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165539, "strain": {"value": "PP_006VZVD|Epuyen/18-19_Patient_4_11/27/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZVD", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258183.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258183.1"}, "PPX_accession": {"value": "PP_006VZVD.1", "url": "https://pathoplexus.org/seq/PP_006VZVD.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6542}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["T5066C"]}}}, {"name": "PP_006VZG6|Epuyen/18-19_Patient_18_12/31/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165385, "strain": {"value": "PP_006VZG6|Epuyen/18-19_Patient_18_12/31/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZG6", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258170.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258170.1"}, "PPX_accession": {"value": "PP_006VZG6.1", "url": "https://pathoplexus.org/seq/PP_006VZG6.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6531}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000055", "node_attrs": {"div": 0.165384, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165385, "strain": {"value": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ9L", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258163.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258163.1"}, "PPX_accession": {"value": "PP_006VZ9L.1", "url": "https://pathoplexus.org/seq/PP_006VZ9L.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6529}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000056", "node_attrs": {"div": 0.165385, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000057", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2C9|Epuyen|Argentina/2022-XX-XX", "node_attrs": {"div": 0.165541, "strain": {"value": "PP_006W2C9|Epuyen|Argentina/2022-XX-XX"}, "accession": "PP_006W2C9", "author": {"author": "Coelho, R.; Kehl, S.; Periolo, N.; Alonso, D.; Bellomo, C.; Martinez, V.", "value": "Coelho, R.; Kehl, S.; Periolo, N.; Alonso, D.; Bellomo, C.; Martinez, V."}, "date": {"value": "2022-XX-XX"}, "abbr_authors": {"value": "Coelho et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PQ215670.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PQ215670.1"}, "PPX_accession": {"value": "PP_006W2C9.1", "url": "https://pathoplexus.org/seq/PP_006W2C9.1"}, "institution": {"value": "INEI ANLIS, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-25"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6477}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["A6381G"], "RdRp": ["K2116E"]}, "labels": {"aa": "RdRp: K2116E"}}}, {"name": "PP_006VZX9|Epuyen/18-19_Patient_6_11/25/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165541, "strain": {"value": "PP_006VZX9|Epuyen/18-19_Patient_6_11/25/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZX9", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258185.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258185.1"}, "PPX_accession": {"value": "PP_006VZX9.1", "url": "https://pathoplexus.org/seq/PP_006VZX9.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6546}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["G3686A"]}}}]}, {"name": "NODE_0000058", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZDC|Epuyen/18-19_Patient_15_12/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZDC|Epuyen/18-19_Patient_15_12/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZDC", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258167.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258167.1"}, "PPX_accession": {"value": "PP_006VZDC.1", "url": "https://pathoplexus.org/seq/PP_006VZDC.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6531}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000059", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W001|Epuyen/18-19_Patient_9_12/12/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006W001|Epuyen/18-19_Patient_9_12/12/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006W001", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258188.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258188.1"}, "PPX_accession": {"value": "PP_006W001.1", "url": "https://pathoplexus.org/seq/PP_006W001.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6549}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000060", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZTH|Epuyen/18-19_Patient_29_1/14/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZTH|Epuyen/18-19_Patient_29_1/14/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZTH", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258181.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258181.1"}, "PPX_accession": {"value": "PP_006VZTH.1", "url": "https://pathoplexus.org/seq/PP_006VZTH.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6542}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000061", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZF8|Epuyen/18-19_Patient_17_12/31/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZF8|Epuyen/18-19_Patient_17_12/31/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZF8", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258169.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258169.1"}, "PPX_accession": {"value": "PP_006VZF8.1", "url": "https://pathoplexus.org/seq/PP_006VZF8.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6543}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000062", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZQP|Epuyen/18-19_Patient_26_1/4/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZQP|Epuyen/18-19_Patient_26_1/4/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZQP", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258178.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258178.1"}, "PPX_accession": {"value": "PP_006VZQP.1", "url": "https://pathoplexus.org/seq/PP_006VZQP.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6541}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000063", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZY7|Epuyen/18-19_Patient_7_12/7/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZY7|Epuyen/18-19_Patient_7_12/7/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZY7", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258186.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258186.1"}, "PPX_accession": {"value": "PP_006VZY7.1", "url": "https://pathoplexus.org/seq/PP_006VZY7.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6546}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000064", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZMV|Epuyen/18-19_Patient_23_1/7/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZMV|Epuyen/18-19_Patient_23_1/7/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZMV", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258175.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258175.1"}, "PPX_accession": {"value": "PP_006VZMV.1", "url": "https://pathoplexus.org/seq/PP_006VZMV.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6531}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000065", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZBG|Epuyen/18-19_Patient_13_12/24/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZBG|Epuyen/18-19_Patient_13_12/24/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZBG", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258165.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258165.1"}, "PPX_accession": {"value": "PP_006VZBG.1", "url": "https://pathoplexus.org/seq/PP_006VZBG.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6541}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000066", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZEA", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258168.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258168.1"}, "PPX_accession": {"value": "PP_006VZEA.1", "url": "https://pathoplexus.org/seq/PP_006VZEA.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6541}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000067", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZNT", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258176.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258176.1"}, "PPX_accession": {"value": "PP_006VZNT.1", "url": "https://pathoplexus.org/seq/PP_006VZNT.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6532}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000068", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZRM|Epuyen/18-19_Patient_27_1/8/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZRM|Epuyen/18-19_Patient_27_1/8/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZRM", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258179.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258179.1"}, "PPX_accession": {"value": "PP_006VZRM.1", "url": "https://pathoplexus.org/seq/PP_006VZRM.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6533}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000069", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZJ1|Epuyen/18-19_Patient_1_11/3/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZJ1|Epuyen/18-19_Patient_1_11/3/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZJ1", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258172.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258172.1"}, "PPX_accession": {"value": "PP_006VZJ1.1", "url": "https://pathoplexus.org/seq/PP_006VZJ1.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6541}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000070", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZUF|Epuyen/18-19_Patient_3_11/20/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZUF|Epuyen/18-19_Patient_3_11/20/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZUF", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258182.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258182.1"}, "PPX_accession": {"value": "PP_006VZUF.1", "url": "https://pathoplexus.org/seq/PP_006VZUF.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6539}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000071", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZPR|Epuyen/18-19_Patient_25_1/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZPR|Epuyen/18-19_Patient_25_1/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZPR", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258177.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258177.1"}, "PPX_accession": {"value": "PP_006VZPR.1", "url": "https://pathoplexus.org/seq/PP_006VZPR.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6542}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000072", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZH3|Epuyen/18-19_Patient_19_1/2/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZH3|Epuyen/18-19_Patient_19_1/2/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZH3", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258171.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258171.1"}, "PPX_accession": {"value": "PP_006VZH3.1", "url": "https://pathoplexus.org/seq/PP_006VZH3.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6547}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000073", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZZ5", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258187.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258187.1"}, "PPX_accession": {"value": "PP_006VZZ5.1", "url": "https://pathoplexus.org/seq/PP_006VZZ5.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6543}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000074", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZKZ|Epuyen/18-19_Patient_20_1/1/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZKZ|Epuyen/18-19_Patient_20_1/1/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZKZ", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258173.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258173.1"}, "PPX_accession": {"value": "PP_006VZKZ.1", "url": "https://pathoplexus.org/seq/PP_006VZKZ.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6539}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000075", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZWB", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258184.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258184.1"}, "PPX_accession": {"value": "PP_006VZWB.1", "url": "https://pathoplexus.org/seq/PP_006VZWB.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6542}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000076", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZSK", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258180.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258180.1"}, "PPX_accession": {"value": "PP_006VZSK.1", "url": "https://pathoplexus.org/seq/PP_006VZSK.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6532}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZAJ", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258164.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258164.1"}, "PPX_accession": {"value": "PP_006VZAJ.1", "url": "https://pathoplexus.org/seq/PP_006VZAJ.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6542}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, "root_sequence": {"RdRp": "MEKYREIHQRVRDLAPGTVSALECIDLLDRLYAVRHDLVDQMIKHDWSDNKDVERPIGQVLLMAGIPNDIIQGMEKKIIPNSPSGQVLKSFFRMTPDNYKITGNLIEFIEVTVTADVSRGIREKKIKYEGGLQFVEHLLETESRKGNIPQPYKITFSVVAVKTDGSNISTQWPSRRNDGVVQHMRLVQADINYVREHLIKLDERASLEAMFNLKFHVSGPKLRYFNIPDYRPQQLCEPRIDNLIQYCKNWLTKEHKFVFKEVSGANVIQAFESHEQLHLQKYNESRKPRNFLLLQLTVQGAYLPSTISSDQCNTRIGCLEISKNQPETPVQMLALDISYKYLSLTRDELINYYSPRVHFQSSPNVKEPGTLKLGLSQLNPLSKSILDNVGKHKKDKGLFGEIIDSINVASQIQINACAKIIEQILSNLEINIGEINASMPSPNKTTGVDDLLNKFYDNELGKYMLSILRKTAAWHIGHLVRDITESLIAHAGLRRSKYWSVHAYDHGNVILFILPSKSLEVVGSYIRYFTVFKDGIGLIDADNIDSKAEIDGVTWCYSKVMSIDLNRLLALNIAFEKSLLATATWFQYYTEDQGHFPLQHALRSIFSFHFLLCVSQKMKLCAIFDNLRYLIPSVTSLYSGYELLIEKFFERPFKSSLDVYLYSIIKSLLISLAQNNKVRFYSRVRLLGLTVDHSTVGASGVYPSLMSRVVYKHYRSLISEATTCFFLFEKGLHGNLPEEAKIHLETIEWARKFQEKEKQYGDILLKEGYTIESVINGEVDVEQQLFCQEVSELSAQELNKYLQAKSQVLCANIMNKHWDKPYFSQTRNISLKGMSGALQEDGHLAASVTLIEAIRFLNRSQTNPNVIDMYEQTKQSKAQARIVRKYQRTEADRGFFITTLPTRVRLEIIEDYFDAIAKVVPEEYISYGGDKKVLNIQNALEKALRWASGVSEITTSTGKSIKFKRKLMYVSADATKWSPGDNSAKFRRFTQAIYDGLSDNKLKCCVVDALRNIYETEFFMSRKLHRYIDSMENHSDAVEDFLAFFSNGVSANVKGNWLQGNLNKCSSLFGAAVSLLFREVWKQLFPELECFFEFAHHSDDALFIYGYLEPEDDGTDWFLYVSQQIQAGNFHWHAINQEMWKSMFNLHEHLLLMGSIKVSPKKTTVSPTNAEFLSTFFEGCAVSIPFVKILLGSLSDLPGLGFFDDLAAAQSRCVKSLDLGACPQLAQLAIVLCTSKVERLYGTADGMVNSPTAFLKVNKAHVPVPLGGDGSMSIMELATAGFGMADKNILKNAFISYKHTRRDGDRYVLGLFKFLMSLSEDVFQHDRLGEFSFVGKVQWKVFTPKAEFEFHDQFSHNYLLEWTRQHPVYDYIIPRNRDNLLVYLVRKLNDPSIITAMTMQSPLQLRFRMQAKQHMKVCRYEGEWVTFREVLAAADSFATSYQPTERDMDLFNTLVSCTFSKEYAWKDFLNEVRCEVLTTRHVHRPKIARTFTVREKDQAIQNPINSVIGYKYALTVDEVSDVLDSAFFPESLSADLQVMKDGVYRELGLDISSPEVLKRIAPLLYKAGRSRVVIVEGNVEGTAESICSYWLKTMSLIKTIRVRPKKEVLKAMSLYSVKENIGLQDDIAATRLCIEIWRWCKANEQDVKEWLTSLYFEKQTLMDWVERFRRKGVVPIDPEIQCIGLLLYDVLGYKSVLQMQANRRAYSGKQYDAYCVQTYNEETKLYEGDLRVTFNFGLDCARLEVFWDKKEYILETSITQRHVLRLLMEEVSQELIRCGMRFKTEQVNQTRSLVLFKTEAGFEWGKPNVPCIVYKHCVLRTGLRTKQPINKEFMINVQSDGFRAIAQMDIESPRFLLAHAYHTLRDIRYQAVQAVGNVWFKTEQHKLFINPIISSGLLENFMKGLPAAIPPAAYSLIMNKAKISVDLFMFNELLALINRNNILNLDGIEETSEGYSTVTSMSSKQWSEEMSLMSDDDIDDMEDFTIALDDIDFEQINLEEDIQHFLQDESAYVGDLLIQTEDIEVKKIRGVTRVLEPVKLLKSWVSKGLAIDKVYNPIGIILMARYMSKTYNFSSTPLALLNPYDLTELESVVKGWGETVNDRFKDLDIEAQTVVKEKGVQPEDVLPDSLFSFRHVDVLLRRLFPRDPVSTFY*", "nuc": "TAGTAGTAGACTCCGGGATAGAAAAAGTTAGAAAAATGGAAAAGTATAGAGAGATTCATCAGAGAGTTAGGGACCTTGCACCTGGAACGGTATCAGCATTAGAATGCATAGATCTACTGGATAGGCTCTACGCTGTCAGACATGACCTGGTTGACCAGATGATAAAACATGACTGGTCTGATAATAAAGATGTAGAAAGACCTATAGGTCAAGTTTTACTGATGGCTGGCATACCTAATGATATTATACAAGGCATGGAGAAGAAGATTATACCAAATAGCCCTTCTGGACAAGTATTGAAAAGCTTTTTCCGAATGACACCAGATAATTATAAAATTACAGGTAACTTGATTGAGTTTATTGAAGTGACTGTAACAGCTGATGTGTCACGAGGTATTAGGGAGAAGAAAATAAAGTATGAAGGAGGCCTCCAATTTGTTGAGCACTTACTGGAAACTGAATCAAGGAAGGGTAATATACCGCAACCTTATAAAATAACATTCTCAGTGGTTGCAGTTAAAACAGATGGATCAAACATCTCGACTCAGTGGCCCAGTCGGAGGAACGATGGGGTAGTTCAGCACATGCGTCTAGTCCAAGCTGATATAAATTATGTCAGAGAGCATTTAATAAAGTTAGATGAGAGAGCATCTTTGGAGGCAATGTTTAACTTAAAGTTCCATGTATCAGGCCCTAAACTGAGATACTTTAACATCCCTGATTATAGACCACAGCAGCTATGTGAACCACGGATTGACAACTTAATACAATATTGCAAGAATTGGTTGACAAAAGAACATAAGTTTGTATTCAAAGAAGTCAGTGGAGCTAATGTGATTCAAGCATTTGAGAGTCATGAACAGTTACATTTACAGAAATACAACGAATCACGAAAACCAAGAAATTTTTTACTCTTGCAGCTTACAGTGCAAGGGGCATATCTACCATCAACAATCAGTTCTGACCAGTGCAATACTAGGATTGGGTGTCTAGAAATATCAAAAAACCAACCAGAAACACCAGTACAGATGCTTGCATTGGATATATCTTATAAGTATCTGAGTCTTACAAGGGATGAGTTGATCAATTATTATAGCCCTAGAGTGCACTTTCAATCGAGCCCTAATGTGAAGGAACCAGGGACACTGAAGTTAGGATTATCACAATTAAATCCACTCTCTAAATCAATTCTTGACAATGTTGGAAAGCATAAAAAGGATAAAGGATTATTTGGTGAGATCATAGATAGCATAAATGTGGCAAGTCAAATACAGATCAATGCATGTGCAAAAATAATTGAGCAGATCTTATCAAATCTTGAAATAAACATTGGAGAAATAAATGCTAGTATGCCTTCTCCTAATAAGACAACAGGTGTAGATGACCTGTTAAATAAATTTTATGATAATGAGCTTGGTAAATATATGTTATCCATTCTGAGGAAAACAGCAGCATGGCATATAGGCCATCTAGTCAGAGATATCACAGAAAGTTTAATTGCACATGCTGGGCTGCGCCGTTCTAAATATTGGTCAGTACATGCATATGACCATGGGAATGTAATTTTGTTTATCTTGCCATCAAAGTCACTAGAGGTAGTAGGTTCTTATATAAGGTATTTCACAGTATTTAAAGATGGTATAGGGTTGATAGACGCAGATAATATTGATTCTAAGGCCGAAATTGATGGTGTCACCTGGTGTTATTCTAAGGTCATGAGTATTGATTTAAACAGGTTATTGGCTTTGAACATAGCTTTTGAGAAGTCACTTCTTGCCACGGCTACATGGTTCCAATATTATACTGAAGACCAAGGCCATTTTCCCCTTCAACATGCATTAAGGTCAATCTTTTCTTTCCACTTTTTACTCTGTGTGTCACAAAAGATGAAGCTATGTGCAATATTTGATAACCTTCGTTATCTGATACCATCAGTAACATCTTTGTACTCTGGGTACGAGTTGTTAATAGAAAAATTCTTTGAGAGACCATTTAAGAGTTCACTGGATGTATACCTTTATTCTATCATAAAATCTCTATTAATTAGTTTGGCACAAAATAATAAAGTTCGATTTTACTCAAGAGTTCGTTTGTTAGGATTGACAGTTGATCACTCCACGGTCGGAGCAAGTGGTGTTTACCCCTCTTTAATGTCCCGTGTTGTTTACAAACATTACAGAAGTTTAATCTCTGAAGCTACAACTTGTTTTTTCTTATTTGAAAAGGGTTTGCATGGGAATTTACCAGAAGAGGCTAAAATACATCTTGAAACCATTGAATGGGCTCGGAAGTTCCAGGAGAAAGAAAAACAATATGGTGATATTCTTCTAAAGGAAGGCTATACAATTGAATCTGTAATCAATGGAGAAGTTGATGTAGAACAACAGCTTTTTTGTCAGGAGGTCTCAGAGCTAAGTGCACAAGAGCTCAACAAATATTTACAGGCAAAATCTCAAGTTTTATGTGCTAATATCATGAATAAACACTGGGACAAACCATATTTCAGTCAAACACGCAATATCAGTCTCAAGGGAATGTCTGGGGCATTGCAAGAGGATGGACATTTAGCTGCTAGTGTGACACTGATTGAAGCAATTAGGTTTTTAAATAGATCACAAACCAATCCAAATGTTATTGATATGTATGAGCAGACTAAACAATCAAAGGCACAAGCTAGGATTGTTAGGAAATACCAGAGAACAGAAGCAGATAGAGGATTTTTTATCACAACATTACCAACTAGGGTGCGATTAGAAATAATAGAAGATTATTTCGATGCAATTGCAAAGGTTGTGCCTGAAGAATATATTTCTTATGGTGGGGATAAAAAAGTTCTAAATATTCAGAATGCACTAGAGAAAGCACTTAGATGGGCATCTGGAGTATCAGAAATTACAACAAGCACTGGTAAAAGCATCAAGTTTAAGCGGAAATTAATGTATGTTAGTGCTGATGCCACAAAATGGTCACCAGGAGATAATTCTGCTAAGTTTAGGAGATTTACACAAGCAATATATGATGGCTTATCAGACAACAAACTGAAATGTTGTGTTGTTGATGCATTACGTAACATTTATGAGACTGAATTTTTTATGTCCAGGAAATTACACCGATATATTGATAGTATGGAAAATCATTCAGATGCGGTTGAAGATTTCTTGGCATTTTTCTCAAATGGAGTCTCAGCCAATGTAAAGGGAAACTGGCTTCAAGGGAACTTAAATAAATGCTCATCATTATTTGGTGCTGCTGTCTCATTACTTTTTCGGGAGGTCTGGAAACAATTGTTTCCAGAATTAGAGTGTTTTTTTGAATTTGCACATCATTCAGATGATGCATTGTTCATTTATGGCTATCTGGAGCCTGAAGATGATGGAACAGATTGGTTTTTGTATGTATCACAGCAGATACAGGCAGGAAACTTTCATTGGCATGCTATAAATCAAGAGATGTGGAAGAGCATGTTTAATCTACATGAGCACTTACTATTAATGGGTTCTATTAAAGTGTCACCTAAGAAGACAACAGTATCACCTACTAATGCAGAATTTCTTTCTACTTTTTTTGAAGGTTGTGCTGTGTCAATCCCTTTTGTTAAAATCTTACTGGGTTCATTATCAGATCTTCCTGGGTTAGGTTTCTTTGATGATTTAGCAGCAGCACAAAGCAGATGTGTAAAGTCACTAGATTTGGGTGCTTGCCCACAATTAGCTCAACTAGCTATAGTATTATGCACAAGCAAAGTTGAGAGGTTGTATGGTACTGCTGATGGAATGGTAAACTCTCCAACAGCATTCCTTAAGGTGAATAAAGCACACGTACCAGTACCACTTGGTGGTGATGGCTCAATGTCTATTATGGAGCTTGCAACAGCTGGTTTTGGGATGGCAGATAAGAATATTTTAAAAAATGCATTCATATCTTATAAGCATACTCGTAGAGATGGTGATAGGTACGTATTGGGTTTATTTAAATTTTTGATGTCATTAAGTGAGGATGTATTCCAGCACGACCGATTGGGTGAGTTTAGTTTTGTAGGTAAAGTTCAATGGAAAGTGTTCACTCCTAAAGCTGAATTTGAATTTCATGATCAATTTTCACATAATTATTTATTAGAGTGGACACGTCAACATCCTGTGTATGACTATATTATTCCTAGAAATAGAGATAATTTGCTTGTATACCTTGTAAGAAAGTTGAATGATCCTAGCATCATTACAGCTATGACTATGCAGTCACCATTACAACTTCGTTTCCGTATGCAAGCAAAGCAACATATGAAAGTATGCCGGTATGAAGGTGAATGGGTCACATTCAGGGAGGTACTTGCTGCAGCTGATAGTTTTGCTACGAGTTACCAACCTACTGAAAGGGACATGGATCTCTTTAATACACTTGTAAGTTGTACATTTTCTAAAGAGTATGCTTGGAAAGACTTTTTAAATGAAGTAAGGTGTGAGGTCTTAACAACAAGACATGTACATAGGCCTAAAATTGCTAGGACATTCACTGTTAGAGAAAAGGACCAGGCTATACAAAATCCAATAAATTCGGTGATTGGCTATAAGTATGCTCTTACAGTGGATGAAGTCAGTGATGTTCTTGATAGTGCATTCTTCCCAGAGTCTCTATCTGCAGACTTACAGGTTATGAAAGATGGAGTTTACAGAGAATTAGGACTTGATATAAGTTCTCCTGAAGTCCTAAAACGCATAGCACCACTATTATATAAGGCAGGAAGGTCACGTGTTGTTATTGTGGAAGGAAATGTAGAAGGGACAGCTGAGTCAATCTGTAGTTATTGGCTCAAGACAATGTCACTGATTAAAACAATCAGAGTAAGACCTAAGAAGGAGGTACTGAAAGCTATGTCTTTATATAGTGTTAAAGAAAATATTGGATTGCAGGATGATATTGCAGCAACTCGACTATGCATAGAAATCTGGAGATGGTGTAAGGCAAATGAACAGGATGTTAAAGAATGGCTAACATCTCTGTACTTTGAAAAACAGACATTGATGGATTGGGTAGAAAGGTTTAGAAGGAAAGGAGTTGTTCCTATTGATCCTGAAATACAATGTATTGGCCTACTCTTATATGATGTATTAGGTTATAAAAGTGTGTTACAAATGCAAGCAAACCGAAGAGCCTATTCAGGTAAGCAATATGATGCATACTGTGTGCAAACATATAACGAGGAAACAAAACTATATGAAGGTGACCTTCGTGTTACTTTTAATTTTGGTTTAGATTGTGCAAGGTTAGAAGTTTTTTGGGATAAAAAAGAGTATATCTTAGAGACATCTATCACCCAACGACATGTGTTGCGGTTACTGATGGAAGAAGTGTCACAAGAATTAATTAGATGTGGAATGAGATTCAAAACAGAGCAAGTCAATCAAACTCGGAGCTTAGTGTTATTCAAAACAGAGGCTGGTTTTGAATGGGGTAAGCCTAATGTGCCATGTATTGTATATAAACACTGTGTCTTGAGAACTGGGCTTCGTACGAAACAGCCAATTAATAAAGAGTTCATGATAAATGTACAAAGTGATGGTTTCCGTGCAATAGCACAGATGGATATTGAGAGTCCACGGTTCTTGTTAGCACATGCATATCATACACTGCGTGATATTAGATATCAAGCAGTGCAGGCAGTAGGGAATGTATGGTTTAAAACAGAACAGCACAAACTATTTATTAACCCAATTATATCATCAGGGCTTTTAGAAAACTTTATGAAAGGCTTACCTGCTGCCATACCTCCTGCTGCATATTCCCTCATAATGAACAAGGCTAAGATTTCTGTGGATTTGTTTATGTTCAATGAGCTATTAGCACTTATAAATAGGAATAATATCCTCAACCTTGATGGGATTGAAGAAACATCTGAAGGTTATAGTACTGTGACATCAATGTCTAGCAAGCAGTGGTCTGAAGAGATGAGTTTAATGTCTGATGATGATATTGATGATATGGAGGACTTTACTATAGCACTGGATGATATTGACTTTGAACAAATAAATTTGGAAGAGGATATACAACACTTTCTGCAGGATGAATCAGCATATGTTGGTGATTTATTGATTCAGACAGAAGACATTGAGGTTAAAAAGATACGTGGGGTGACAAGAGTATTAGAGCCAGTCAAGCTATTAAAAAGCTGGGTTTCTAAAGGCCTTGCTATAGACAAAGTATACAATCCTATCGGGATAATCTTAATGGCAAGATACATGTCAAAAACATACAATTTCAGTTCAACACCTCTTGCACTATTAAATCCATATGACTTGACAGAACTTGAAAGTGTTGTAAAGGGATGGGGAGAAACTGTAAATGATCGATTCAAAGATTTAGATATTGAGGCACAAACAGTTGTTAAAGAAAAGGGTGTACAGCCAGAAGATGTACTCCCTGATTCATTATTCTCTTTCAGGCATGTTGATGTTTTGCTGCGAAGGTTGTTCCCGCGTGACCCTGTATCAACATTCTATTAGTGGATTTTATACCTTATTCATACAGTATGTATATTGTAGTGTTCTTTTCCCGGAGCATACTACTA"}} \ No newline at end of file diff --git a/data/nextstrain/orthohantavirus/andv/m/CHANGELOG.md b/data/nextstrain/orthohantavirus/andv/m/CHANGELOG.md index 247243235..64bfe4ca6 100644 --- a/data/nextstrain/orthohantavirus/andv/m/CHANGELOG.md +++ b/data/nextstrain/orthohantavirus/andv/m/CHANGELOG.md @@ -1,3 +1,9 @@ +## Unreleased + +- update outbreak name to 2026-Hondius +- make nucleotide default sequence view. +- add GPC amino acid substitutions + ## 2026-05-11T18:59:50Z - Updating Nextclade dataset with the latest sequences and metadata from Pathoplexus diff --git a/data/nextstrain/orthohantavirus/andv/m/pathogen.json b/data/nextstrain/orthohantavirus/andv/m/pathogen.json index 632d22a56..4a51d4cdf 100644 --- a/data/nextstrain/orthohantavirus/andv/m/pathogen.json +++ b/data/nextstrain/orthohantavirus/andv/m/pathogen.json @@ -10,13 +10,12 @@ "changelog": "CHANGELOG.md" }, "schemaVersion": "3.0.0", - "defaultCds": "GPC", "attributes": { "name": "Andesvirus (segment M)", "reference name": "Chile-9717869", - "reference accession": "NC_003467" + "reference accession": "NC_003467", + "experimental": true }, - "experimental": true, "alignmentParams": { "penaltyGapExtend": 1, "penaltyGapOpen": 8, @@ -60,4 +59,4 @@ "windowSize": 50 } } -} \ No newline at end of file +} diff --git a/data/nextstrain/orthohantavirus/andv/m/sequences.fasta b/data/nextstrain/orthohantavirus/andv/m/sequences.fasta index 0965f65bc..d9c5231e4 100644 --- a/data/nextstrain/orthohantavirus/andv/m/sequences.fasta +++ b/data/nextstrain/orthohantavirus/andv/m/sequences.fasta @@ -387,21 +387,6 @@ TTCAGTGTTCTCTGCCCCAGGAGAGGACACAAGAAAACTGTTTAAGCATTAACCTCAAAT CCTACATTAGATTATATACATATATACATTTATACACTTCTTCATATTTAGCTGCACTAA GATATTAATAAACTCTAGTTATTGACTTTATAAGATTATTATGGAACTAACCCCACTTAA AAAAAACAAATACTTTACTCATATATAACTCCATATTCTCTTACCGAGGATTTTGT ->MN737480 -ATGGAGTGCCCACATACTGTGGGTCTCGGTCAAGGATATATCATTGGATCATCAGAATTA -GGGTTGATATCGATTGAGGCTGCATCTGATATAAAGCTTGAGAGTTCTTGTAATTTCGAC -CTCCACACAACATCCATGAATCAGAAGAGTTACACTCAAGTAGAATGGAGGAAAAAGAGT -GACACAACTGACACCACAAATGCTGCATCCACCACCTTTGAAGCACAGACTAAAACTATT -AATCTTAGGGGGACCTGCATTCTGGCACCTGAGCTTTATGACACACTAAAGAAAGTAAAG -AAGACAGTGCTGTGTTATGATCTAACTTGCAATCAAACACACTGCCAGCCAACTGTCTAC -TTAATTGCACCTGTATTGACATGTATGTCAATACGAAGCTGTATGGCTAGTGTATTTACA -AGCAGAATTCAGGTGATTTACGAAAAAACGCACTGTGTGACAGGCCAGTTAATAGAGGGC -CAGTGCTTCAATCCAGCTCACACATTAACATTGTCACAGCCTGCCCACACCTATGACACA -GTAACCCTCCCAGTCACTTGCTTTTTTACACCTAAGAAGTCAGAGCAGCTAAAAGTCATA -AAAACATTTGAGGGGATATTGACAAAGACAGGCTGTACAGAGAATGCACTGCAAGGTTAC -TATGTCTGTTTCCTAGGAAGTCACTCAGAACCTTTAATTGTCCCAAGTCTTGAAGACATA -AGGTCTGCTGAAGTTGTTAGTAGGATGATCGTACATCCTCGAGGAGAAGATCATGATGCT -ATACAGAATTCACAAAGTTAC >PV808468 GACTCCGCAAGAAGAAGCAAAAAATTAAAGAAGTGAGTTTAAAATGGAAGGGTGGTATCT GGTTGCTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCCAAAACCATTTATGAGCT diff --git a/data/nextstrain/orthohantavirus/andv/m/tree.json b/data/nextstrain/orthohantavirus/andv/m/tree.json index ba3986fd7..4e932fdea 100644 --- a/data/nextstrain/orthohantavirus/andv/m/tree.json +++ b/data/nextstrain/orthohantavirus/andv/m/tree.json @@ -1 +1 @@ -{"version": "v2", "meta": {"title": "Andes Virus M Segment (ANDV)", "updated": "2026-05-11", "build_url": "https://github.com/nextstrain/andv", "data_provenance": [{"name": "Pathoplexus", "url": "https://pathoplexus.org/"}], "maintainers": [{"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}], "display_defaults": {"map_triplicate": false, "color_by": "outbreak", "distance_measure": "div"}, "genome_annotations": {"Gc": {"end": 3468, "seqid": "defaults/m/reference.gb", "start": 2005, "strand": "+", "type": "CDS"}, "Gn": {"end": 2004, "seqid": "defaults/m/reference.gb", "start": 52, "strand": "+", "type": "CDS"}, "nuc": {"end": 3671, "start": 1, "strand": "+", "type": "source"}}, "colorings": [{"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "date", "title": "Collection Date", "type": "categorical"}, {"key": "region", "title": "Region", "type": "categorical", "scale": [["Africa", "#CEB541"], ["Europe", "#E39B39"], ["South America", "#E56C2F"]]}, {"key": "country", "title": "Country", "type": "categorical"}, {"key": "division", "title": "Admin Division", "type": "categorical"}, {"key": "host", "title": "Host", "type": "categorical"}, {"key": "abbr_authors", "title": "Authors", "type": "categorical"}, {"key": "dataUseTerms", "title": "Data use terms", "type": "categorical"}, {"key": "restrictedUntil", "title": "Restricted Until", "type": "categorical"}, {"key": "date_released", "title": "Release Date", "type": "categorical"}, {"key": "length", "title": "Length", "type": "continuous"}, {"key": "INSDC_accession", "title": "INSDC Accession", "type": "categorical"}, {"key": "PPX_accession", "title": "Pathoplexus Accession", "type": "categorical"}, {"key": "institution", "title": "Author Affiliations", "type": "categorical"}, {"key": "totalAmbiguousNucs", "title": "Ambiguous Nucleotides", "type": "continuous"}, {"key": "outbreak", "title": "outbreak", "type": "categorical"}], "filters": ["country", "division", "host", "abbr_authors", "clade_membership"], "geo_resolutions": [{"key": "country", "demes": {"Chile": {"latitude": -31.7613364, "longitude": -71.3187696}, "South Africa": {"latitude": -28.8166235, "longitude": 24.991639}, "Brazil": {"latitude": -10.3333332, "longitude": -53.1999999}, "Netherlands": {"latitude": 52.1326, "longitude": 5.2913}, "Switzerland": {"latitude": 46.8182, "longitude": 8.2275}, "Argentina": {"latitude": -37.052315, "longitude": -64.869142}}}], "panels": ["tree", "entropy"], "extensions": {"nextclade": {"clade_node_attrs": [{"name": "outbreak", "displayName": "Outbreak", "description": "Annotation of recent outbreaks (to be refined)", "skipAsReference": false}]}}}, "tree": {"name": "NODE_0000000", "node_attrs": {"div": 0, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A32C", "T34G", "G38A", "G43T", "G45A", "T47G", "T48A", "A51G", "C67T", "T75C", "C76T", "T78G", "A89C", "G93A", "C94T", "G114A", "G126A", "C141T", "C147T", "C159G", "C171T", "C174T", "A186T", "A189G", "T195G", "C201T", "T202C", "T219A", "A223T", "C231G", "G234A", "T240A", "T255C", "T267A", "G271A", "C273T", "G276A", "T282C", "T284A", "C285T", "C288A", "A291G", "C315A", "T324C", "C327A", "G339A", "C342A", "T345A", "C348A", "A360G", "T363C", "T372A", "A379C", "T387C", "A391G", "A393C", "C394T", "T402A", "C408T", "T414C", "A429T", "G444T", "C447T", "A456G", "A459C", "T462C", "T465C", "A468G", "T474C", "T477C", "T486A", "A507G", "T508A", "G510A", "A528G", "T531C", "T540A", "G546C", "A552T", "C555T", "A582C", "A591T", "G600A", "G603A", "G609A", "G615A", "C621T", "C624T", "A627T", "A636T", "T637C", "T643C", "A645C", "T648A", "T669G", "T672G", "C675A", "C678A", "T681G", "A685G", "C687T", "T688A", "T690C", "C699T", "G708A", "G711A", "G714T", "G717C", "A720G", "A723G", "G727T", "A735G", "A747G", "T750A", "C751A", "G753C", "C755G", "G756T", "G759A", "T765C", "C768T", "G771A", "G774A", "T781C", "G786A", "G798T", "T805C", "A807T", "G810A", "T826C", "A829C", "T830A", "G837A", "T841C", "G843A", "G846A", "C849T", "A852C", "G855T", "T858A", "A864G", "T870C", "G876A", "C880A", "C888T", "T891A", "A897T", "A900G", "G910C", "C912A", "A915C", "G918A", "A928G", "C931T", "A937C", "A939G", "T951A", "C954T", "T970A", "C971G", "A972T", "T975C", "T978C", "C981T", "A984T", "A993C", "G996A", "A1002T", "C1005A", "A1011T", "C1014T", "T1038A", "C1047G", "A1048G", "A1050G", "A1071G", "T1074C", "T1077A", "T1083G", "A1086C", "G1087A", "T1092A", "C1104T", "A1108G", "C1109T", "T1116C", "G1126A", "A1128C", "A1132C", "C1150T", "A1152G", "A1155T", "A1158C", "T1188C", "T1194C", "C1204T", "A1206G", "T1218A", "T1221A", "T1224C", "C1233T", "T1236C", "A1242G", "A1251C", "C1260A", "T1266C", "T1275C", "A1281C", "C1290T", "A1293G", "G1295A", "C1300G", "T1302A", "A1305C", "T1308A", "A1311G", "G1314A", "A1317G", "A1320T", "T1326C", "C1329T", "C1336A", "A1341T", "A1359T", "C1365T", "A1374G", "C1383G", "A1386C", "A1389G", "C1392A", "T1399C", "T1407A", "T1416C", "T1419A", "A1425C", "T1440C", "A1458G", "C1464T", "T1468C", "G1470A", "A1476T", "A1479G", "C1488G", "G1491A", "A1503G", "A1530T", "C1536T", "G1542C", "G1546A", "T1549C", "G1551A", "T1554A", "T1557A", "G1560A", "G1561A", "C1563T", "A1572T", "A1573G", "A1575C", "T1576C", "G1581A", "G1583T", "T1584C", "G1589A", "T1593G", "T1594G", "G1596A", "G1599A", "T1608C", "C1611A", "C1617T", "T1635C", "C1641T", "A1650G", "A1660G", "A1665G", "A1671G", "T1677A", "G1692C", "C1695T", "G1699A", "T1704C", "T1707C", "T1734A", "G1745A", "G1749A", "T1752C", "T1755C", "C1758T", "T1770C", "A1788G", "T1791A", "A1794G", "T1800A", "C1818T", "C1827T", "A1845C", "A1848G", "G1857A", "A1860T", "C1861T", "G1863A", "T1875G", "A1878G", "G1881A", "G1887A", "A1892G", "A1896G", "A1906C", "A1908T", "C1912T", "C1914A", "T1929C", "A1932G", "A1938G", "G1947T", "T1950A", "G1953A", "C1962T", "C1963G", "T1966C", "G1971A", "A1981C", "G1984A", "A1987G", "C1995T", "A1998T", "A2016C", "A2017C", "G2019T", "C2028A", "G2040A", "T2043A", "T2055A", "G2058A", "A2059G", "G2070A", "C2076T", "C2077T", "C2079A", "G2085A", "C2088T", "G2097A", "C2109T", "C2115T", "T2118C", "T2121C", "G2124A", "A2136T", "C2139T", "A2142T", "C2145T", "A2151G", "G2157A", "T2163C", "C2166T", "C2169T", "C2175T", "A2187G", "T2196A", "T2202A", "C2212T", "C2214A", "C2215T", "G2217A", "G2235A", "G2280A", "C2286T", "G2301A", "A2304T", "T2305G", "T2307A", "C2313T", "C2316T", "G2325A", "C2328T", "C2331T", "C2346T", "T2355C", "T2364G", "A2373T", "G2382A", "T2385A", "A2388T", "T2397A", "T2406G", "T2409C", "C2412T", "A2418G", "G2433A", "C2439A", "G2445A", "A2448C", "T2451C", "T2475A", "T2481C", "G2484A", "T2485C", "A2496G", "T2502A", "T2526C", "G2535A", "A2538T", "T2553A", "A2559T", "G2562T", "C2565G", "A2568T", "A2574T", "A2583G", "A2586T", "T2598G", "T2599C", "T2605C", "T2610G", "C2614T", "A2628G", "T2634A", "T2637A", "C2685A", "C2691A", "T2694A", "C2695A", "C2697T", "G2709A", "A2715T", "G2718A", "A2730C", "T2733C", "A2734C", "C2745T", "T2748A", "T2754A", "A2763T", "A2772G", "A2781G", "T2790C", "A2814T", "A2820G", "T2842C", "A2844G", "A2847T", "T2853A", "C2856T", "C2868T", "C2883T", "A2889T", "G2895T", "A2902C", "C2907T", "C2910T", "C2916T", "T2919C", "C2922A", "A2925G", "C2937T", "T2943C", "T2950C", "C2964T", "A2970G", "A2973T", "C2976T", "C2977T", "C2982T", "T3012A", "A3018T", "G3021A", "C3030T", "A3033T", "A3051T", "A3060G", "T3066C", "G3081A", "C3090T", "A3093T", "T3096A", "A3117T", "A3118G", "T3126A", "C3129T", "C3135T", "A3150G", "A3165T", "C3168G", "C3180T", "A3204T", "C3210T", "C3213T", "A3219G", "T3223C", "A3225T", "C3226G", "T3240A", "G3252A", "A3255T", "A3258T", "T3267C", "A3270G", "A3279T", "T3282C", "T3288C", "A3303T", "C3312T", "A3321G", "A3339T", "T3342G", "G3345A", "C3360T", "C3366T", "G3369T", "T3372C", "A3387T", "T3396G", "A3400G", "C3405G", "T3408C", "C3409T", "C3411T", "C3417T", "A3421C", "G3423C", "C3426T", "G3430A", "T3432C", "T3433C", "G3435C", "T3438C", "G3450A", "C3465T", "C3470T", "G3474-", "T3478-", "C3479-", "A3480-", "A3481-", "C3482-", "T3483-", "C3484G", "C3485-", "T3486-", "A3487-", "C3488-", "A3492-", "G3493-", "A3494-", "T3495-", "C3496-", "A3497-", "T3506C", "C3512T", "C3515A", "G3536C", "A3537G", "A3545G", "G3553T", "G3559-", "T3563-", "G3569C", "A3570-", "T3577C", "G3578-", "G3579-", "A3580T", "T3583-", "A3585-", "C3589T", "A3590T", "T3617C", "T3621A", "C3645A"], "Gc": ["M5L", "P70T", "S101A", "P231T", "G248H", "E282D", "M355I", "T372A", "L408V", "L469F", "M473L", "V476I"], "Gn": ["Y13S", "S51P", "A54T", "I58L", "A74T", "F78Y", "D88E", "I114V", "L153I", "D206E", "I212V", "S213T", "E222D", "V226L", "L234I", "I260H", "L277I", "A287P", "S293G", "H294Y", "T311A", "K315Q", "V346I", "T353V", "V359I", "I361L", "R415K", "V499I", "V504I", "I507V", "I508V", "C511F", "R513K", "V514M", "I537V", "V550I", "R565K", "I579M", "L638V", "I644L", "V645I", "I646V"]}, "labels": {"aa": "Gc: M5L, P70T, S101A, P231T, G248H, E282D, M355I, T372A, L408V, L469F, M473L, V476I; Gn: Y13S, S51P, A54T, I58L, A74T, F78Y, D88E, I114V, L153I, D206E, I212V, S213T, E222D, V226L, L234I, I260H, L277I, A287P, S293G, H294Y, T311A, K315Q, V346I, T353V, V359I, I361L, R415K, V499I, V504I, I507V, I508V, C511F, R513K, V514M, I537V, V550I, R565K, I579M, L638V, I644L, V645I, I646V"}}, "children": [{"name": "NODE_0000001", "node_attrs": {"div": 0.014749, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A45T", "G70A", "T177A", "T252C", "A303G", "A381T", "C400T", "T444C", "T729G", "T954A", "T1026C", "G1048A", "A1125T", "C1146T", "C1149T", "C1224T", "G1300A", "A1437G", "A1570G", "C1644A", "A1785C", "G1812A", "G1869A", "A1965G", "T2145A", "T2160A", "T2212A", "A2535G", "C2596T", "C2649T", "A2652T", "C2721T", "A3120T", "C3124T", "A3306T", "T3417A", "G3484-", "C3591A"], "Gc": ["I19V", "H248G"], "Gn": ["V7I", "P117S", "L515A"]}, "labels": {"aa": "Gc: I19V, H248G; Gn: V7I, P117S, L515A"}}, "children": [{"name": "NODE_0000002", "node_attrs": {"div": 0.0373994, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G159T", "G355T", "A438T", "C441A", "C489T", "C551A", "T555C", "G567A", "C660T", "G672A", "G681C", "G723T", "C753T", "T861A", "G894A", "A963G", "T972C", "A994C", "G1167A", "C1284T", "T1320C", "G1338A", "G1371T", "T1398C", "G1401A", "G1458T", "A1467C", "T1473A", "A1581G", "G1590A", "T1605A", "A1629T", "C1635T", "A1719G", "A1791T", "T1810C", "T1830C", "G1878A", "G1917A", "A1956T", "T2019G", "T2103A", "C2121T", "A2325G", "C2367T", "A2382T", "G2418A", "C2466T", "G2472A", "A2499G", "G2625T", "G2628A", "C2631A", "A2658T", "C2730T", "T2766A", "T2868C", "C2902A", "A2904G", "A2988G", "C3042T", "G3147T", "A3153T", "G3177T", "C3192T", "G3219A", "G3336A", "A3442C"], "Gn": ["A102S", "T167N", "A311S"]}, "labels": {"aa": "Gn: A102S, T167N, A311S"}}, "children": [{"name": "PP_006W0VA|VARS/22-01|Brazil/2022-12-09", "node_attrs": {"div": 0.148168, "strain": {"value": "PP_006W0VA|VARS/22-01|Brazil/2022-12-09"}, "accession": "PP_006W0VA", "author": {"author": "Amgarten, D.; Dorlass, E.; dos Santos Soares, A. C.; Moreira Salles, A. P.; Takara, A.; da Silva Santos, A.; Oliveira Sartori, B. S.; Petroni, R. C.; Sallum Filho, C. F. C.; Hidal, J. T.; Camargo, L. F. A.; Doi, A.; Rebello Pinho, J. R.", "value": "Amgarten, D.; Dorlass, E.; dos Santos Soares, A. C.; Moreira Salles, A. P.; Takara, A.; da Silva Santos, A.; Oliveira Sartori, B. S.; Petroni, R. C.; Sallum Filho, C. F. C.; Hidal, J. T.; Camargo, L. F. A.; Doi, A.; Rebello Pinho, J. R."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OQ092244.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OQ092244.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2023-01-18"}, "PPX_accession": {"value": "PP_006W0VA.1", "url": "https://pathoplexus.org/seq/PP_006W0VA.1"}, "date": {"value": "2022-12-09"}, "abbr_authors": {"value": "Amgarten et al."}, "length": {"value": 3387}, "country": {"value": "Brazil"}, "institution": {"value": "Hospital Israelita Albert Einstein, Varsomics"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["A99G", "C111A", "A126G", "G144A", "T147C", "T150C", "T156A", "C180G", "G198A", "A199G", "G211T", "A216T", "C243T", "T246C", "T258C", "A261T", "C282T", "A309G", "T321A", "C324T", "A330G", "A339T", "A357C", "A361G", "A372C", "C375T", "C376T", "T378A", "T381G", "G384C", "T390C", "C393A", "A405G", "C414T", "T418C", "C454T", "C465T", "G468A", "A486G", "G487A", "G495A", "A501T", "A525C", "G558A", "A567T", "T570C", "A576C", "T585C", "A594T", "T597A", "A600G", "T606A", "T621C", "T624C", "A630C", "C633T", "T636A", "C637T", "G639A", "A642C", "C681T", "T687G", "C690T", "G720A", "C721A", "T722A", "A730G", "A732T", "A744G", "G755C", "A780C", "G783T", "T792C", "T798C", "A810G", "T816C", "A819G", "A822G", "A830T", "T840C", "C841T", "A843G", "A846T", "A858T", "C870T", "A874C", "T888C", "G900A", "C915T", "T921C", "A924T", "T930C", "C933T", "G939A", "G945A", "A948G", "A952G", "A957T", "C975T", "A982T", "A1005C", "C1017G", "T1032C", "A1035G", "C1042T", "A1052G", "T1053C", "G1054C", "C1059T", "A1062T", "G1071C", "A1095G", "T1098A", "T1104C", "G1119A", "T1131A", "G1152A", "T1164C", "G1177A", "G1179T", "T1182A", "A1185T", "A1191T", "C1194G", "T1197C", "A1203T", "T1204C", "T1215C", "A1218G", "C1251A", "T1254C", "C1257T", "A1269G", "A1287G", "G1293A", "A1295G", "C1305T", "C1326T", "T1329G", "T1353G", "G1374A", "G1389A", "A1395G", "C1399T", "T1404C", "C1416T", "C1428T", "C1434T", "G1446A", "C1461T", "T1476C", "T1480C", "G1488T", "A1494C", "G1503T", "C1509G", "C1519T", "T1521A", "T1530G", "A1557T", "A1560C", "T1572C", "G1573A", "T1574C", "A1578C", "C1585T", "A1587G", "G1593A", "A1596G", "A1611T", "T1614C", "T1620C", "G1626A", "T1629C", "A1632G", "T1639A", "G1647T", "A1653G", "T1656C", "T1662A", "C1668T", "A1701C", "C1707T", "A1725T", "A1734T", "A1737G", "T1743C", "A1749G", "C1755T", "A1764C", "G1794A", "A1800C", "A1815G", "T1825G", "A1836G", "T1837C", "T1860C", "G1875C", "A1881G", "A1884T", "A1893G", "C1905T", "T1908G", "T1923C", "C1929T", "T1951C", "T1983A", "T1995A", "T1998A", "A2004T", "G2007A", "A2013G", "A2028C", "A2034T", "T2037C", "T2052G", "G2082A", "C2083T", "T2091C", "A2094T", "T2109C", "G2130A", "C2133G", "T2158A", "C2163T", "T2166A", "T2175C", "A2184G", "A2205G", "T2220G", "A2238C", "T2247A", "G2250A", "T2265C", "C2277T", "A2283G", "A2301G", "T2304A", "G2334A", "A2343G", "T2346G", "C2355T", "G2364A", "C2391T", "T2394A", "T2400C", "T2415C", "A2424G", "T2430C", "T2442C", "A2445G", "T2454G", "T2466G", "T2478C", "A2484G", "G2496A", "A2502G", "A2520T", "C2556T", "G2583A", "T2589A", "T2592C", "T2595A", "C2599T", "A2622G", "A2634T", "C2635T", "A2655G", "A2664C", "G2670T", "T2724A", "A2748C", "T2763A", "G2772A", "A2778G", "G2781A", "C2787A", "C2790T", "A2796T", "A2805G", "G2820A", "T2838C", "C2841T", "C2842T", "T2847C", "A2863G", "T2874C", "C2886T", "T2898C", "A2901G", "A2913G", "C2919T", "T2923C", "T2928C", "A2929C", "A2931G", "T2937A", "A2940C", "G2946A", "T2964C", "T2976C", "T2977C", "A2979G", "G3000T", "T3015G", "T3033C", "A3045G", "T3051A", "G3054A", "G3069A", "A3072T", "T3102C", "A3108T", "A3114T", "C3123T", "A3130C", "G3132A", "T3135A", "T3138C", "T3156A", "A3162G", "T3171C", "A3174T", "A3183T", "T3213C", "T3222A", "T3243C", "C3267T", "T3273A", "C3282T", "G3285A", "T3303C", "T3309C", "A3313G", "C3318T", "A3363G", "T3366C", "T3369G", "C3372T", "T3381A", "G3390A", "T3393C", "G3400A", "G3405A", "C3408T", "T3414C", "T3426C", "C3438T", "C3441A", "G3444A", "C3453T"], "Gc": ["S52T", "D282E", "T287A", "T437A"], "Gn": ["I50V", "T54S", "T104A", "V146I", "E175D", "L224N", "I227V", "H260L", "E265D", "I301V", "N334S", "A335P", "V376I", "K415R", "I426M", "V508T", "M514V", "A515V", "F530I", "S592A", "K614R"]}, "labels": {"aa": "Gc: S52T, D282E, T287A, T437A; Gn: I50V, T54S, T104A, V146I, E175D, L224N, I227V, H260L, E265D, I301V, N334S, A335P, V376I, K415R, I426M, V508T, M514V, A515V, F530I, S592A, K614R"}}}, {"name": "NODE_0000003", "node_attrs": {"div": 0.0654527, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T168G", "A192T", "T201A", "C255A", "A342C", "C363A", "A399T", "T408A", "A417C", "C444G", "G456T", "C493T", "A510C", "G565A", "C582A", "T612C", "C645T", "T646G", "A648T", "A711G", "A726G", "G735A", "A891T", "G966A", "C983G", "C993A", "T1002A", "C1116T", "A1209T", "A1212C", "T1332C", "G1335A", "A1380G", "A1407T", "C1515T", "A1527C", "T1595C", "A1683C", "T1698C", "T1773A", "C1785T", "C1845G", "C1873T", "A1911C", "A1980G", "C2016G", "T2115C", "A2125C", "T2169C", "T2271A", "T2289A", "T2379A", "G2406T", "A2433G", "A2460G", "A2607T", "A2619G", "A2718G", "T2757A", "A2850C", "T2856C", "C2943T", "T2958C", "A3012T", "A3045T", "T3255C", "T3354A", "T3473-", "C3518A", "T3575-", "A3576-", "C3577-", "A3584-"], "Gc": ["I355M", "I466V"], "Gn": ["V172I", "S199A"]}, "labels": {"aa": "Gc: I355M, I466V; Gn: V172I, S199A"}}, "children": [{"name": "PP_006VLUU|Ol22996|nan/XXXX-XX-XX", "node_attrs": {"div": 0.173717, "strain": {"value": "PP_006VLUU|Ol22996|nan/XXXX-XX-XX"}, "accession": "PP_006VLUU", "author": {"author": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C.", "value": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C."}, "host": {"value": "mice and others"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "AF028024.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF028024.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "1997-12-01"}, "PPX_accession": {"value": "PP_006VLUU.1", "url": "https://pathoplexus.org/seq/PP_006VLUU.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Calderon et al."}, "length": {"value": 3646}, "institution": {"value": "University of Nevada, Microbiology"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["A30G", "C32T", "G41A", "T43C", "A81G", "T94G", "G96C", "C111T", "T129C", "G144A", "T150C", "G153T", "A183G", "G193A", "G194A", "G195C", "A204C", "A209G", "T222C", "T223C", "A225G", "G231A", "C237T", "A244G", "C253T", "C256T", "T258C", "A261C", "A264G", "T265C", "T273C", "G279A", "A327C", "A339T", "T340G", "C342T", "A345G", "A366G", "T378A", "G391A", "T394C", "T399C", "C406T", "A408G", "C414T", "G423T", "G427A", "T429C", "A432G", "A436C", "C442T", "T447C", "T456C", "C458A", "G468A", "A473G", "T492C", "A501C", "C531T", "C546G", "T548C", "T552C", "G558A", "T561C", "G564A", "T591C", "A594T", "T597G", "A604G", "T618C", "T627C", "G628T", "T636G", "G639A", "T663C", "A678T", "C690T", "T696C", "A708G", "G720A", "T723C", "G729A", "A730G", "G747A", "G755C", "T756C", "A762T", "A771G", "G783A", "A786G", "T798A", "T816C", "A822G", "T834G", "A876G", "T882A", "A892C", "C903T", "T909C", "T930C", "T931C", "A936G", "G945C", "A951G", "C975T", "C978T", "T987C", "C991T", "G999A", "A1002G", "G1009T", "C1017A", "C1029T", "T1032A", "A1044T", "G1047A", "A1048C", "A1052G", "C1074T", "A1087T", "A1089G", "A1092T", "T1101C", "G1119A", "A1126C", "A1161T", "G1179A", "A1191T", "A1203C", "G1206A", "T1215A", "T1233C", "C1236T", "T1239A", "T1248G", "T1290G", "T1299C", "A1300C", "A1302G", "A1308T", "G1311A", "G1339A", "T1341G", "T1365C", "G1374A", "C1386A", "T1387C", "C1398A", "G1410A", "G1413A", "A1419T", "C1425A", "C1440T", "G1446A", "C1467T", "C1468T", "A1470G", "G1479A", "A1491T", "A1494G", "T1495C", "A1497G", "T1500C", "T1521C", "A1524T", "T1530C", "C1533T", "A1566T", "T1567C", "C1585T", "G1591A", "T1602C", "T1620A", "G1626A", "A1632G", "A1638G", "T1639C", "T1641C", "G1647A", "A1653G", "T1656G", "T1662A", "G1665A", "G1674A", "G1713A", "A1730T", "A1731G", "C1732T", "A1767G", "A1773G", "T1776C", "A1800T", "C1809T", "T1833C", "A1857G", "G1875A", "A1887G", "G1892A", "A1895G", "A1917T", "G1938A", "G1968T", "T1989C", "T1995A", "A2004G", "G2007A", "G2022A", "A2043C", "G2059A", "T2061C", "A2064G", "A2070G", "A2073T", "G2082A", "A2085T", "A2097T", "A2103C", "T2139C", "G2178A", "G2187A", "A2193G", "A2196T", "A2202T", "C2208T", "T2220C", "A2235C", "T2244C", "A2271G", "T2292C", "A2295C", "G2310A", "T2313C", "T2337C", "T2358C", "C2370T", "A2397C", "T2412G", "T2415C", "T2430A", "C2448T", "T2454A", "A2457G", "A2467C", "A2475T", "A2502T", "C2505T", "G2535A", "G2547A", "C2556T", "T2571G", "T2574C", "A2577G", "T2589G", "T2595G", "T2596C", "G2598A", "G2601T", "A2613G", "T2649G", "T2652C", "T2661C", "A2664C", "G2670A", "C2673T", "T2676A", "T2679G", "T2715A", "A2727C", "T2730A", "C2734A", "A2739G", "T2742C", "T2793A", "A2796C", "A2803C", "T2814A", "C2829T", "G2844C", "G2871A", "T2895C", "A2922T", "G2925A", "T2934C", "T2937C", "C2950T", "T2964G", "T3033A", "T3039A", "A3048G", "C3057T", "G3060A", "A3072C", "T3078C", "A3084C", "T3090C", "T3105C", "G3118A", "T3124C", "A3126G", "G3132A", "T3135G", "T3159A", "G3168A", "T3177C", "T3180C", "T3186C", "T3222G", "A3234G", "C3237T", "T3243C", "A3252G", "T3258A", "A3261G", "C3267T", "T3276C", "C3282T", "T3306C", "A3320G", "T3333C", "G3357A", "T3360C", "A3363G", "T3387A", "T3393C", "G3394A", "G3396A", "C3403T", "A3418G", "A3420G", "A3460G", "T3465G", "T3472G", "-3473A", "-3474A", "A3475T", "C3476A", "-3478T", "-3479G", "-3480T", "-3481A", "-3482T", "-3483G", "-3484C", "-3485A", "-3486T", "-3487T", "-3488T", "T3491G", "-3492A", "-3494A", "-3495T", "-3496A", "-3497A", "T3500A", "C3502-", "G3509T", "C3510A", "A3521G", "C3530A", "A3531C", "T3533-", "A3534-", "A3535-", "C3536-", "G3537-", "T3538-", "A3546C", "C3550G", "T3555-", "A3556-", "T3557-", "T3558-", "-3563A", "C3569T", "T3571-", "T3572-", "A3573-", "T3574-", "T3580-", "A3581-", "C3582-", "C3624T", "A3630T", "T3631C", "T3634G", "A3645C"], "Gc": ["V19I", "C215W", "A372T", "K439R", "V464I", "I472V", "T486A"], "Gn": ["L15V", "G48N", "E53G", "T54A", "N65D", "H69Y", "S72P", "S97A", "V114I", "K124N", "V126I", "T129P", "T136N", "H141R", "F166S", "I185V", "A193S", "I227V", "Y294H", "A320S", "N334S", "I346L", "I359L", "V430M", "F530L", "E560V", "K615R"]}, "labels": {"aa": "Gc: V19I, C215W, A372T, K439R, V464I, I472V, T486A; Gn: L15V, G48N, E53G, T54A, N65D, H69Y, S72P, S97A, V114I, K124N, V126I, T129P, T136N, H141R, F166S, I185V, A193S, I227V, Y294H, A320S, N334S, I346L, I359L, V430M, F530L, E560V, K615R"}}}, {"name": "NODE_0000004", "node_attrs": {"div": 0.131876, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A37G", "T46A", "A93T", "T141C", "T156A", "T159C", "A177T", "A183T", "T186A", "G211A", "T213A", "C252T", "A255G", "G303A", "A309G", "T351C", "A361G", "T400G", "G420A", "A426G", "A441G", "C462T", "C465T", "C477T", "C516T", "T534C", "T570A", "T591G", "G651A", "T789C", "T807C", "T813C", "A819T", "T825C", "A828T", "T834C", "T849C", "T855A", "C870T", "T873C", "A874C", "A885C", "T934C", "A952T", "A969G", "C990T", "A996G", "C1017T", "A1038T", "A1041T", "C1042T", "G1054A", "A1062T", "C1086T", "A1110G", "T1125C", "T1131A", "A1137C", "A1143T", "T1155A", "A1173G", "T1182A", "A1185C", "T1200C", "T1245C", "C1251A", "T1254C", "G1293A", "A1296G", "C1305T", "T1329C", "T1359A", "C1399T", "T1404A", "A1431T", "C1461T", "T1476A", "A1482G", "G1488T", "C1509T", "A1524G", "C1542T", "T1563C", "A1569G", "T1572G", "T1582G", "C1584T", "C1668T", "G1671A", "A1725C", "A1734G", "A1740T", "A1746G", "A1764T", "C1809A", "A1823T", "T1825G", "A1836G", "G1839A", "G1848A", "T1851C", "A1890C", "T1899C", "A1920T", "T1935C", "T1941C", "A1950C", "T1962C", "C1966T", "A1971G", "T1989A", "A2028T", "T2049A", "A2055G", "A2058G", "T2077C", "A2079G", "A2094C", "T2109A", "C2118T", "A2124G", "A2145C", "G2151A", "T2166C", "T2247A", "T2262C", "C2277T", "T2286C", "T2316C", "A2340G", "C2355T", "G2376A", "T2388C", "C2391T", "T2394A", "C2409T", "A2421G", "C2451T", "T2454C", "A2487G", "G2496A", "C2526T", "T2530C", "A2532G", "T2538C", "A2541T", "G2547T", "T2562A", "G2565A", "T2592C", "A2628C", "A2634T", "C2635T", "G2640A", "T2682C", "A2685C", "T2697A", "T2703A", "T2775C", "G2781T", "C2790A", "A2826T", "C2859A", "A2862T", "T2889A", "A2913T", "C2919T", "T2937G", "C2961T", "T2976C", "A2979G", "A2991T", "A2994T", "A3021G", "C3028T", "T3030G", "T3036C", "G3054A", "T3063C", "C3066T", "A3108T", "A3111T", "T3138A", "T3147C", "G3150A", "A3183C", "T3201C", "T3207C", "T3222C", "C3237A", "A3261T", "C3264T", "T3279A", "C3318T", "A3345G", "T3378A", "G3390T", "A3402T", "A3420T", "C3421T", "C3423A", "T3429C", "C3435T", "C3441T", "A3445C", "A3447G", "A3459G", "T3517-", "G3529-", "A3552T", "T3553G", "T3554C", "-3570T", "C3626T"], "Gn": ["T104A", "S117A", "T235S", "I301L", "A335T", "F511V", "Y591F", "S592A", "K614R"]}, "labels": {"aa": "Gn: T104A, S117A, T235S, I301L, A335T, F511V, Y591F, S592A, K614R"}}, "children": [{"name": "PP_006W100|Lechiguanas|Argentina/2022-XX-XX", "node_attrs": {"div": 0.187381, "strain": {"value": "PP_006W100|Lechiguanas|Argentina/2022-XX-XX"}, "accession": "PP_006W100", "author": {"author": "Bellomo, C. M.; Alonso, D. O.; Martinez, V. P.; Sanchez Loria, J.; Campos, J.", "value": "Bellomo, C. M.; Alonso, D. O.; Martinez, V. P.; Sanchez Loria, J.; Campos, J."}, "host": {"value": "yellow pygmy rice rat"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OR890440.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR890440.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2024-07-01"}, "PPX_accession": {"value": "PP_006W100.1", "url": "https://pathoplexus.org/seq/PP_006W100.1"}, "date": {"value": "2022-XX-XX"}, "abbr_authors": {"value": "Bellomo et al."}, "length": {"value": 3653}, "country": {"value": "Argentina"}, "institution": {"value": "INEI-ANLIS \"Dr C. G. Malbran\", Virology"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["T93C", "T94G", "A132G", "T162C", "G189A", "C229T", "T246C", "A318C", "A339C", "A354G", "C375T", "G384A", "C393T", "C417T", "T429C", "G480A", "T489C", "G507A", "G528A", "T552C", "A576G", "G579A", "A603G", "T618C", "G628A", "C633T", "C637T", "G669A", "T693C", "T696C", "A710G", "T723A", "T741C", "A750C", "A762G", "C807A", "T870G", "A876G", "T882C", "C933T", "G939A", "G945A", "C975A", "T981C", "T987C", "A1020G", "T1041C", "A1065G", "A1095G", "G1122A", "T1146C", "A1161T", "A1167G", "C1194A", "T1197C", "C1212T", "T1239A", "C1257T", "T1284C", "G1311A", "G1317A", "C1320A", "T1344C", "C1386T", "A1395C", "C1416T", "G1437T", "C1468T", "A1470G", "A1476G", "T1488C", "T1500C", "C1527G", "C1548T", "C1549T", "A1590G", "G1591A", "A1611C", "T1635C", "C1645T", "A1686G", "C1692T", "C1707T", "G1719A", "A1728G", "C1732T", "A1749G", "C1755T", "A1767G", "T1827C", "T1833C", "T1860C", "A1866G", "A1869G", "G1875A", "A1881G", "A1884G", "G1888A", "T1908C", "A1926G", "C1929T", "T1947C", "T1951C", "T1956A", "A1972G", "A1974G", "A1989G", "T1998C", "A2025T", "T2037C", "T2052A", "T2091C", "C2095T", "C2131T", "C2133A", "C2172T", "A2184G", "C2208T", "A2217G", "T2223C", "T2331C", "T2346C", "T2361A", "G2364A", "T2373A", "T2382C", "T2403A", "T2412C", "G2436A", "A2439T", "T2463C", "A2469G", "G2499A", "A2577G", "T2580C", "T2586C", "T2589A", "C2604T", "A2616G", "T2625G", "A2632G", "T2634C", "A2637G", "T2658C", "G2670A", "T2712C", "A2727G", "A2748G", "T2751C", "A2796G", "T2814C", "T2823C", "T2826C", "C2850T", "A2877G", "T2907C", "T2916C", "T2923C", "G2925A", "T2949C", "T2964G", "T3033C", "T3042A", "T3045C", "A3096T", "T3108C", "T3111C", "A3114T", "A3126G", "A3162G", "T3180C", "T3186C", "T3192C", "A3219G", "T3228C", "A3240G", "A3336G", "T3339A", "T3390C", "T3414C", "A3423G", "C3438T", "T3491G", "A3501C", "C3516T", "-3517A", "A3521G", "T3523A", "-3529T", "C3530T", "C3532T", "T3533C", "G3537T", "T3540C", "T3549C", "-3559T", "-3563T", "T3571G", "T3580A", "A3645C"], "Gc": ["I210V"], "Gn": ["L15V", "A193T", "K220R", "K448N", "V613I", "T641A"]}, "labels": {"aa": "Gc: I210V; Gn: L15V, A193T, K220R, K448N, V613I, T641A"}}}, {"name": "NODE_0000005", "node_attrs": {"div": 0.191255, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C111G", "T129C", "A175G", "C180T", "T222C", "G231T", "C237T", "T249C", "A261T", "A267C", "G279A", "A297G", "A315C", "A330T", "T340G", "A345G", "G360A", "A363T", "A372G", "C387T", "A405G", "T438G", "C442T", "C474T", "C510T", "T585C", "C601T", "T606A", "A609G", "T660C", "T663A", "A675T", "A705T", "C717T", "A855G", "T867C", "T909C", "T921C", "A927G", "A936T", "G963A", "A993G", "G999A", "T1011A", "C1026T", "A1044G", "G1071A", "T1098C", "T1101C", "T1149C", "G1152A", "A1155G", "A1176G", "C1188T", "G1206A", "A1218G", "G1242A", "A1244G", "T1323C", "C1326T", "A1336C", "T1353C", "T1371C", "C1428T", "C1467T", "T1480C", "A1497G", "T1509A", "T1515A", "C1522T", "T1530C", "C1533T", "T1536C", "T1542A", "A1551G", "C1575T", "C1576T", "A1578G", "G1593A", "T1602C", "T1641C", "G1650A", "T1656C", "A1659G", "G1674A", "C1752T", "T1758A", "C1770T", "C1779T", "A1809G", "C1830T", "T1837C", "A1839T", "A1878G", "C1911T", "T1912C", "T1983C", "T2010C", "A2013C", "C2014T", "G2019A", "G2022A", "T2028C", "A2049G", "C2083T", "T2088C", "T2100A", "A2127G", "T2136C", "G2250A", "T2253A", "A2274C", "G2334A", "C2352A", "T2358C", "T2367C", "A2424G", "T2430A", "T2442C", "A2475G", "C2481T", "C2485T", "A2490T", "C2505T", "G2508A", "T2529C", "A2562G", "T2568G", "T2607C", "A2613G", "A2631T", "A2691G", "A2703G", "T2742C", "A2754T", "T2784C", "C2787T", "T2799C", "A2802G", "C2829T", "C2841T", "G2844T", "C2868T", "T2883C", "C2886T", "T2895C", "A2902C", "G2904A", "T2913C", "G2946A", "C2950T", "G2988A", "A3003T", "G3060A", "T3093A", "T3141C", "T3153G", "G3168A", "A3189G", "T3195C", "T3210C", "G3270A", "T3273C", "T3276C", "T3303C", "T3309A", "G3342A", "T3351C", "C3352T", "A3354G", "T3361C", "A3363C", "T3366C", "T3369C", "C3408T", "T3411C", "G3444A", "C3453T", "-3478T", "-3480T", "-3481A", "-3483T", "-3486T", "-3487G", "-3488C", "C3502A", "T3505G", "C3506T", "G3509A", "C3510G", "A3511C", "T3512C", "A3515-", "A3518-", "A3519-", "T3524A", "G3526C", "T3528-", "C3536T", "T3538C", "A3539T", "T3541A", "A3542T", "G3545A", "A3547T", "T3549-", "A3560-", "C3561-", "T3562-", "T3564-", "A3565-", "-3575T", "-3576A", "-3577C", "-3578T", "-3579G", "C3582T", "-3583A", "-3584A", "-3585C"], "Gn": ["I42V", "E88D", "S97A", "N398S", "M514V"]}, "labels": {"aa": "Gn: I42V, E88D, S97A, N398S, M514V"}}, "children": [{"name": "PP_006VLSY|Of22819|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207248, "strain": {"value": "PP_006VLSY|Of22819|nan/XXXX-XX-XX"}, "accession": "PP_006VLSY", "author": {"author": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C.", "value": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C."}, "host": {"value": "yellow pygmy rice rat"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "AF028022.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF028022.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "1997-12-01"}, "PPX_accession": {"value": "PP_006VLSY.1", "url": "https://pathoplexus.org/seq/PP_006VLSY.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Calderon et al."}, "length": {"value": 3653}, "institution": {"value": "University of Nevada, Microbiology"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["T169A", "A170T", "T171A", "T273C", "C282T", "G306A", "T312C", "C393T", "T447C", "A551T", "T561C", "A594G", "A651G", "A744G", "G783A", "C813T", "G844A", "G864A", "G872C", "T1109C", "G1179A", "T1299C", "A1314G", "C1362T", "T1422C", "A1542G", "C1732T", "T1860C", "C1962T", "G1968A", "C2077T", "G2079A", "G2130A", "C2133T", "C2213A", "A2214C", "A2217G", "T2265C", "C2286T", "A2301G", "G2325A", "G2421A", "C2604T", "T2712C", "A2757G", "A2853T", "C2976T", "G3118C", "C3119A", "T3129A", "A3279G", "C3372T", "C3438T", "-3479G", "-3482T", "G3487A", "A3489T", "T3491A", "-3492A", "-3493G", "-3494C", "-3495A", "-3496T", "-3497T", "C3516-", "T3520-"], "Gc": ["T70N", "A372H"], "Gn": ["Y40I", "N167I", "E265K", "S274T", "V353A"]}, "labels": {"aa": "Gc: T70N, A372H; Gn: Y40I, N167I, E265K, S274T, V353A"}}}, {"name": "NODE_0000006", "node_attrs": {"div": 0.19515, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A225G", "T321G", "G564A", "T621C", "A822G", "A1056G", "C1074T", "A1395G", "T1920C", "T2259C", "T2361G", "T2511C", "-3484C", "-3485A"]}}, "children": [{"name": "PP_006W27K|ER19-SP1693|Argentina/2019-XX-XX", "node_attrs": {"div": 0.208811, "strain": {"value": "PP_006W27K|ER19-SP1693|Argentina/2019-XX-XX"}, "accession": "PP_006W27K", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OR987856.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987856.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W27K.1", "url": "https://pathoplexus.org/seq/PP_006W27K.1"}, "date": {"value": "2019-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3632}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "division": {"value": "Entre Rios"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["A81G", "C129T", "A165G", "T183G", "A305G", "T456G", "T493C", "T552C", "G579A", "A678G", "C681T", "T699C", "T727C", "T936C", "C975T", "T1032A", "T1053C", "G1122A", "G1179A", "T1204C", "T1248C", "A1515G", "G1551A", "G1569A", "C1641T", "G1746A", "G1788C", "C1810T", "C2163T", "A2394G", "A2430G", "C2530T", "T2596C", "A2632G", "C2673T", "A2853G", "G3021A", "A3054G", "A3060G", "A3096G", "T3111C", "T3261C", "C3276A", "G3456A", "T3470C", "A3471T", "-3479T", "-3482C", "T3486A", "A3503G", "C3511-", "C3512-", "T3513-", "T3514-", "-3515C", "-3517T", "-3518C", "-3519A", "A3521-", "T3522-", "C3532T", "C3554T"], "Gc": ["I210V", "D424E"], "Gn": ["K85R", "M579I"]}, "labels": {"aa": "Gc: I210V, D424E; Gn: K85R, M579I"}}}, {"name": "NODE_0000007", "node_attrs": {"div": 0.199192, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G168T", "T183C", "C249T", "T252C", "A366G", "T378C", "A786G", "A1065G", "T1284C", "G1482A", "C1725T", "A2085G", "C2742T", "C3369T", "C3526T"]}}, "children": [{"name": "PP_006W1SF|BA18-LD1633|Argentina/2018-XX-XX", "node_attrs": {"div": 0.205701, "strain": {"value": "PP_006W1SF|BA18-LD1633|Argentina/2018-XX-XX"}, "accession": "PP_006W1SF", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "PP151164.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151164.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1SF.1", "url": "https://pathoplexus.org/seq/PP_006W1SF.1"}, "date": {"value": "2018-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3613}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "division": {"value": "Buenos Aires"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["A204C", "T285C", "C351T", "C362T", "C375T", "T684C", "A1071G", "A1084G", "T1150C", "C1185T", "T1197C", "T1215C", "G1794A", "A1872C", "A1926G", "C1983T", "A2100G", "A2394G", "T2517C", "G2562A", "T2580C", "C2673T", "C2913T", "T3472G", "-3473T", "-3474C", "A3475-", "C3476-", "C3477-", "T3478-", "T3480-", "A3481-", "T3483-", "C3488T", "-3492T", "-3493A", "-3494C", "-3495T", "-3496C", "-3497A", "T3498A", "T3500-", "A3501-", "A3502C", "G3505T", "A3509G", "G3510A", "C3511A", "C3512T", "T3513G", "-3515C", "-3517T"], "Gn": ["A104V", "I345V"]}, "labels": {"aa": "Gn: A104V, I345V"}}}, {"name": "PP_006W1RH|BA18-RR1620|Argentina/2018-XX-XX", "node_attrs": {"div": 0.207539, "strain": {"value": "PP_006W1RH|BA18-RR1620|Argentina/2018-XX-XX"}, "accession": "PP_006W1RH", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "PP151163.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151163.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1RH.1", "url": "https://pathoplexus.org/seq/PP_006W1RH.1"}, "date": {"value": "2018-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3628}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "division": {"value": "Buenos Aires"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["A204G", "G345A", "G396A", "G669A", "T696C", "C781T", "T870C", "A1203G", "C1257T", "A1546G", "A1863G", "A2120T", "C2172T", "G2364A", "G2421A", "A2469G", "C2592T", "G2601A", "G2613A", "T2769C", "T2874C", "C2913A", "A3138G", "A3240G", "C3282T", "T3306C", "C3351T", "C3429T", "-3479T", "-3482C", "T3486A", "A3503G", "C3516-", "T3520-"], "Gc": ["Y39F"], "Gn": ["I499V"]}, "labels": {"aa": "Gc: Y39F; Gn: I499V"}}}]}]}]}]}]}]}, {"name": "NODE_0000008", "node_attrs": {"div": 0.105015, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A28G", "A39G", "G41A", "C111T", "T120C", "T129C", "A131G", "A132G", "T141C", "T156C", "C157T", "C180G", "A192C", "T196C", "A204G", "G211A", "A219G", "A225G", "G231A", "C243T", "A264C", "G279A", "G291A", "A297G", "A315T", "C363T", "A366G", "T369A", "C387A", "C393G", "T394C", "T408C", "G427A", "C454T", "G456A", "C462T", "G468A", "C474T", "G480A", "T504A", "G507A", "A508G", "T509C", "A510T", "T534C", "G554A", "A576G", "C582T", "T591C", "T597G", "A604G", "A609G", "T618C", "G639A", "A642T", "T654A", "T657C", "T663C", "C671T", "C679T", "G681A", "T687C", "T693C", "A705T", "C717T", "C721T", "A726G", "A744G", "G747A", "A774G", "T789G", "T801C", "T804C", "A810T", "C826T", "A828G", "A837G", "T840C", "C841T", "G900A", "C903T", "C915T", "T921C", "A927G", "T930A", "A932T", "G945T", "A948C", "C978T", "A1044G", "G1050A", "A1052C", "G1054A", "C1059T", "A1065G", "T1067A", "G1071A", "C1074T", "A1080T", "A1095G", "T1098C", "T1104C", "G1108A", "T1109C", "A1110C", "C1134T", "T1150C", "T1155C", "C1158T", "T1159G", "T1164C", "G1179C", "T1197C", "A1203T", "A1212G", "C1257T", "A1260T", "T1263C", "C1266A", "A1269T", "A1272T", "C1275T", "T1290G", "T1299C", "A1302G", "G1347A", "C1362T", "A1380G", "A1395G", "T1404A", "G1410C", "G1413A", "T1422C", "C1425T", "C1468T", "A1494T", "G1503A", "C1509A", "C1533T", "C1542A", "A1566C", "C1585T", "G1591A", "T1595C", "T1602C", "C1608T", "T1620C", "C1645T", "A1659G", "G1671A", "A1686C", "C1692T", "A1701C", "C1732T", "A1740C", "T1758C", "A1764G", "T1776C", "C1779T", "T1824C", "G1839A", "G1848A", "T1851C", "A1866G", "A1880G", "A1890C", "G1892A", "C1905T", "T1941C", "A1950G", "T1951C", "A1953G", "A1956G", "G1968C", "T1989A", "C2016T", "T2052A", "A2058G", "A2079G", "A2085G", "A2097T", "T2100A", "T2115C", "C2133T", "T2136C", "T2148C", "A2154G", "A2193G", "C2208T", "A2217G", "T2220G", "T2241C", "G2250A", "A2274C", "A2283G", "A2295G", "G2310A", "T2316C", "A2322G", "A2343T", "T2346C", "C2352T", "C2370T", "G2376A", "T2388C", "A2397T", "C2409T", "C2410T", "T2412A", "A2421C", "A2445G", "T2455C", "A2457G", "T2463C", "A2469G", "A2475T", "T2478C", "A2490T", "G2508A", "T2538A", "G2560A", "T2562A", "G2565A", "T2571C", "T2574A", "A2577G", "T2580C", "T2595C", "C2599T", "G2610C", "A2613T", "C2631T", "A2632G", "A2637G", "A2655T", "C2673T", "T2703A", "T2712C", "T2715C", "A2727G", "T2757A", "T2784C", "C2787A", "T2793A", "T2814C", "A2835T", "T2838C", "C2841T", "C2842T", "A2850T", "C2859T", "G2871A", "T2898C", "A2904T", "C2917T", "C2919A", "T2964A", "T2977C", "T2982C", "A2991T", "G3000A", "C3028T", "T3030A", "A3048G", "G3060T", "G3069T", "C3091A", "T3093G", "T3105C", "A3114T", "T3117C", "G3118T", "C3123T", "T3138C", "T3156A", "T3186C", "A3189G", "T3204A", "T3207C", "T3213A", "T3228G", "C3237A", "C3244T", "T3246A", "A3261G", "C3264T", "C3288A", "T3309A", "G3342A", "A3345G", "T3351C", "T3354C", "G3357A", "A3402T", "C3433T", "C3435A", "C3441A", "A3450G", "A3459G", "-3474G", "C3476-", "C3477-", "A3501T", "T3505C", "C3516T", "T3522A", "T3524A", "G3526A", "G3537C", "T3538A", "T3540C", "A3546-", "A3547-", "T3554G", "A3556C", "-3559A", "T3562A", "-3563C", "T3566-", "-3570T", "-3578A", "-3579G", "C3582T", "-3583A", "-3585C", "T3590A", "T3606C", "C3617T", "A3621T", "C3626T"], "Gc": ["V186I", "I210V", "L363M", "A372S", "I466V"], "Gn": ["K27R", "E88D", "V126I", "I153A", "S168N", "I185V", "T207M", "T235S", "Y294F", "Q315K", "N334A", "A335T", "F339Y", "V353T", "S370A", "K610R"]}, "labels": {"aa": "Gc: V186I, I210V, L363M, A372S, I466V; Gn: K27R, E88D, V126I, I153A, S168N, I185V, T207M, T235S, Y294F, Q315K, N334A, A335T, F339Y, V353T, S370A, K610R"}}, "children": [{"name": "PP_006VLTW|Hu39694|nan/XXXX-XX-XX", "node_attrs": {"div": 0.124352, "strain": {"value": "PP_006VLTW|Hu39694|nan/XXXX-XX-XX"}, "accession": "PP_006VLTW", "author": {"author": "Levis, S.; Morzunov, S. P.; Rowe, J. E.; Enria, D.; Pini, N.; Calderon, G.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C.", "value": "Levis, S.; Morzunov, S. P.; Rowe, J. E.; Enria, D.; Pini, N.; Calderon, G.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "AF028023.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF028023.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "1997-12-01"}, "PPX_accession": {"value": "PP_006VLTW.1", "url": "https://pathoplexus.org/seq/PP_006VLTW.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Levis et al."}, "length": {"value": 3654}, "institution": {"value": "University of Nevada, Microbiology"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["A113G", "C215T", "A387G", "G508T", "T549C", "C633T", "T684A", "T727C", "T768C", "T810C", "T849C", "C860T", "G864A", "T867G", "G868T", "G883A", "C993T", "T1053C", "A1071C", "T1080C", "C1086A", "G1152T", "C1188T", "G1212C", "A1243C", "A1282C", "G1290A", "T1353A", "G1383A", "C1386T", "T1387C", "A1396G", "C1397A", "T1473C", "A1497G", "T1530C", "G1647A", "T1761C", "A1815G", "A1926G", "G1938A", "T1986C", "G2130A", "T2133G", "C2172T", "T2292C", "T2319C", "G2377T", "A2385G", "C2421T", "G2632C", "G2736A", "A2748G", "T2775C", "T2904C", "C2943T", "G3175-", "G3270A", "T3294C", "G3396A", "G3428A", "A3442C", "T3500C", "T3558C"], "Gc": ["V125F", "V210L", "G391-", "S475N"], "Gn": ["K21R", "A55V", "A153S", "A270V", "V273F", "V278I", "A311T", "A334T", "N398H", "N411H", "T449D"]}, "labels": {"aa": "Gc: V125F, V210L, G391-, S475N; Gn: K21R, A55V, A153S, A270V, V273F, V278I, A311T, A334T, N398H, N411H, T449D"}}}, {"name": "NODE_0000009", "node_attrs": {"div": 0.115146, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C282T", "T285C", "A330G", "C441T", "C516T", "G579A", "C852T", "A982G", "T987C", "C1029T", "A1051G", "T1134G", "A1191G", "G1242A", "T1359C", "A1561G", "T1563A", "C1576T", "A1731G", "T1923C", "G1953T", "A1980G", "A2040G", "T2139C", "G2178A", "A2190G", "T2223C", "T2262C", "T2394A", "A2460G", "A2532G", "T2667C", "C2886T", "T2907C", "-3546C", "-3547T", "C3548-", "C3550A"], "Gn": ["I504V"]}, "labels": {"aa": "Gn: I504V"}}, "children": [{"name": "NODE_0000010", "node_attrs": {"div": 0.128766, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T94A", "C202T", "T273C", "T315C", "A327G", "A486G", "T582C", "T642A", "T696C", "G729A", "A786G", "T909C", "C937A", "C1040T", "C1042T", "A1173G", "T1182A", "C1299T", "G1590A", "C1704T", "C1707T", "G1713A", "A1803G", "A1863G", "T1969C", "T1983C", "A2034G", "T2037C", "A2070G", "G2406C", "T2586C", "T2766C", "A2922G", "T2923C", "G2925A", "T2934C", "T2937G", "T3123C", "T3210C", "T3222C", "C3351T", "C3372T", "T3411C", "T3517C", "A3525G", "T3553G", "G3554T", "C3556T"], "Gn": ["L15M", "P51S", "T330I"]}, "labels": {"aa": "Gn: L15M, P51S, T330I"}}, "children": [{"name": "PP_006W1MR|BA10-GJ1165|Argentina/2010-XX-XX", "node_attrs": {"div": 0.128767, "strain": {"value": "PP_006W1MR|BA10-GJ1165|Argentina/2010-XX-XX"}, "accession": "PP_006W1MR", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OR987854.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987854.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1MR.1", "url": "https://pathoplexus.org/seq/PP_006W1MR.1"}, "date": {"value": "2010-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3556}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "division": {"value": "Buenos Aires"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W1NP|BA10-OE1169|Argentina/2010-XX-XX", "node_attrs": {"div": 0.128767, "strain": {"value": "PP_006W1NP|BA10-OE1169|Argentina/2010-XX-XX"}, "accession": "PP_006W1NP", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OR987855.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987855.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1NP.1", "url": "https://pathoplexus.org/seq/PP_006W1NP.1"}, "date": {"value": "2010-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3556}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "division": {"value": "Buenos Aires"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000011", "node_attrs": {"div": 0.123536, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T123C", "C192T", "G219A", "A261G", "A291G", "G303A", "T462C", "C465T", "C534T", "C660T", "G789T", "C801T", "T807G", "T888C", "C1179T", "T1233C", "T1356C", "A1404G", "T1455C", "C1824T", "A2043C", "A2499G", "A2560G", "C2610T", "C2733T", "C2961T", "T3033C", "G3132A", "A3246G", "T3470C", "T3592C"], "Gc": ["I186V"]}, "labels": {"aa": "Gc: I186V"}}, "children": [{"name": "NODE_0000012", "node_attrs": {"div": 0.126687, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C324T", "G966T", "G1647A", "A1869G", "G1938A", "A2796C", "A2919G", "C3105T", "G3390T", "T3429C", "A3522G", "T3582-", "A3583T", "C3585A"]}}, "children": [{"name": "PP_006W0UC|Arg-h484|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.126688, "strain": {"value": "PP_006W0UC|Arg-h484|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0UC", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OP555731.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555731.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2023-10-10"}, "PPX_accession": {"value": "PP_006W0UC.1", "url": "https://pathoplexus.org/seq/PP_006W0UC.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3622}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W1G2|BA02_SMM484|Argentina/2002-XX-XX", "node_attrs": {"div": 0.126688, "strain": {"value": "PP_006W1G2|BA02_SMM484|Argentina/2002-XX-XX"}, "accession": "PP_006W1G2", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OR965908.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR965908.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2024-09-16"}, "PPX_accession": {"value": "PP_006W1G2.1", "url": "https://pathoplexus.org/seq/PP_006W1G2.1"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3622}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "division": {"value": "Buenos Aires"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000013", "node_attrs": {"div": 0.12404, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A2863G", "C2943T"], "Gc": ["T287A"]}, "labels": {"aa": "Gc: T287A"}}, "children": [{"name": "NODE_0000014", "node_attrs": {"div": 0.125163, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T429C", "T1530C", "T2166C", "-3492T", "-3493A", "-3494T", "-3495T", "-3496C", "-3497A", "T3501A", "C3505T", "C3506T", "G3509-", "C3510-", "A3511-", "T3512-", "T3513-", "T3514-", "A3515-", "T3516-"]}}, "children": [{"name": "PP_006W1TD|BA17_SD1583|Argentina/2017-XX-XX", "node_attrs": {"div": 0.129893, "strain": {"value": "PP_006W1TD|BA17_SD1583|Argentina/2017-XX-XX"}, "accession": "PP_006W1TD", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "PP003838.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP003838.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1TD.1", "url": "https://pathoplexus.org/seq/PP_006W1TD.1"}, "date": {"value": "2017-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3561}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "division": {"value": "Buenos Aires"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["G153A", "C324T", "A522T", "G528A", "T621C", "C663T", "C948T", "C1042T", "C1128T", "G1380A", "G1453A", "T1495C", "T1521C", "A2698G", "C3105T"], "Gc": ["S232G"], "Gn": ["D468N"]}, "labels": {"aa": "Gc: S232G; Gn: D468N"}}}, {"name": "PP_006W1UB|BA11-MH1249|Argentina/2011-XX-XX", "node_attrs": {"div": 0.128951, "strain": {"value": "PP_006W1UB|BA11-MH1249|Argentina/2011-XX-XX"}, "accession": "PP_006W1UB", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "PP003839.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP003839.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1UB.1", "url": "https://pathoplexus.org/seq/PP_006W1UB.1"}, "date": {"value": "2011-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3501}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "division": {"value": "Buenos Aires"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["C2115T", "A2124G", "C2391T", "T2586A", "C2667T", "A2988G", "T3046C", "G3147A", "C3186T", "C3192T", "G3246A", "T3582-", "A3583T", "C3585A"]}}}]}, {"name": "NODE_0000015", "node_attrs": {"div": 0.124887, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C781T", "G1950C", "A3162G"]}}, "children": [{"name": "PP_006W1LT|BA16_LJC1557|Argentina/2016-XX-XX", "node_attrs": {"div": 0.129494, "strain": {"value": "PP_006W1LT|BA16_LJC1557|Argentina/2016-XX-XX"}, "accession": "PP_006W1LT", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez- Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez- Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OR987853.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987853.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1LT.1", "url": "https://pathoplexus.org/seq/PP_006W1LT.1"}, "date": {"value": "2016-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3624}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "division": {"value": "Buenos Aires"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["C618T", "C637T", "G837A", "C921T", "C1155T", "G1167A", "T1248C", "C1356T", "C2262T", "G2283A", "C2605T", "C2667T", "T2850C", "G3048A", "G3246A", "C3324T"]}}}, {"name": "NODE_0000016", "node_attrs": {"div": 0.127569, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G651A", "T909C", "T1149C", "C1704T", "G1965A", "C2391T", "C2715T", "G2736A", "T2892C"]}}, "children": [{"name": "NODE_0000017", "node_attrs": {"div": 0.130742, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G291A", "G330A", "A480G", "G495A", "G1191A", "G1354A", "A1914G", "C2083T", "G2406A", "G2518A", "C2667T"], "Gc": ["A172T"], "Gn": ["V435I"]}, "labels": {"aa": "Gc: A172T; Gn: V435I"}}, "children": [{"name": "PP_006W24R|BA02_AOA490|Argentina/2002-XX-XX", "node_attrs": {"div": 0.130743, "strain": {"value": "PP_006W24R|BA02_AOA490|Argentina/2002-XX-XX"}, "accession": "PP_006W24R", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OR987851.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987851.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W24R.1", "url": "https://pathoplexus.org/seq/PP_006W24R.1"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3616}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "division": {"value": "Buenos Aires"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000018", "node_attrs": {"div": 0.130743, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W25P|BA02_ROM495|Argentina/2002-XX-XX", "node_attrs": {"div": 0.131035, "strain": {"value": "PP_006W25P|BA02_ROM495|Argentina/2002-XX-XX"}, "accession": "PP_006W25P", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OR987852.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987852.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W25P.1", "url": "https://pathoplexus.org/seq/PP_006W25P.1"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3610}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "division": {"value": "Buenos Aires"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["A17C", "G22A", "A23C", "A24T", "C26A", "G28A", "A30G", "C32A", "G34T", "A36T", "A37T", "A38G", "G39A", "T42G", "T43G", "T45-", "T46-", "G47-", "A48-", "A49-", "A50-", "G51-", "A52-", "T1605C"]}}}, {"name": "PP_006W23T|BA02_RJF487|Argentina/2002-XX-XX", "node_attrs": {"div": 0.130744, "strain": {"value": "PP_006W23T|BA02_RJF487|Argentina/2002-XX-XX"}, "accession": "PP_006W23T", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OR987850.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987850.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W23T.1", "url": "https://pathoplexus.org/seq/PP_006W23T.1"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3492}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "division": {"value": "Buenos Aires"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["T3547-", "T3549-", "A3550-", "T3551-", "A3552-", "T3553-", "G3554-", "T3555-", "C3556-", "T3557-", "T3558-", "A3559-", "A3560-", "C3561-", "A3562-", "C3563T", "-3566T", "A3568T", "C3569G", "T3570-", "T3571-", "A3573C", "C3577A", "G3579A", "T3580C", "T3582C", "A3583T", "C3585A", "C3586A", "A3590T", "C3592T"]}}}]}]}, {"name": "NODE_0000019", "node_attrs": {"div": 0.12939, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G204A", "C804T", "C1042T", "A1524G", "C2466T", "A2979G", "C3540T"]}}, "children": [{"name": "PP_006W1JX|BA02_VVD480|Argentina/2002-XX-XX", "node_attrs": {"div": 0.129683, "strain": {"value": "PP_006W1JX|BA02_VVD480|Argentina/2002-XX-XX"}, "accession": "PP_006W1JX", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OR965910.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR965910.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2024-09-16"}, "PPX_accession": {"value": "PP_006W1JX.1", "url": "https://pathoplexus.org/seq/PP_006W1JX.1"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3628}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "division": {"value": "Buenos Aires"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["T798C"]}}}, {"name": "NODE_0000020", "node_attrs": {"div": 0.129391, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W1KV|BA02_VO483|Argentina/2002-XX-XX", "node_attrs": {"div": 0.129392, "strain": {"value": "PP_006W1KV|BA02_VO483|Argentina/2002-XX-XX"}, "accession": "PP_006W1KV", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OR965911.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR965911.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2024-09-16"}, "PPX_accession": {"value": "PP_006W1KV.1", "url": "https://pathoplexus.org/seq/PP_006W1KV.1"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3634}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "division": {"value": "Buenos Aires"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W1HZ|BA02_VVN481|Argentina/2002-XX-XX", "node_attrs": {"div": 0.129392, "strain": {"value": "PP_006W1HZ|BA02_VVN481|Argentina/2002-XX-XX"}, "accession": "PP_006W1HZ", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OR965909.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR965909.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2024-09-16"}, "PPX_accession": {"value": "PP_006W1HZ.1", "url": "https://pathoplexus.org/seq/PP_006W1HZ.1"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3545}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "division": {"value": "Buenos Aires"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["G28A", "A30G", "C32A", "G34T", "A36T", "A37T", "A38G", "G39A", "T42G", "T43G", "T45-", "T46-", "G47-", "A48-", "A49-", "A50-", "G51-", "A52-"]}}}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000021", "node_attrs": {"div": 0.0437111, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T43G", "G51A", "T94C", "G159A", "A192G", "G195T", "T201C", "G231T", "A267T", "A288C", "A345C", "A402T", "T429A", "C459A", "C477T", "T552A", "A600G", "A603G", "A615G", "T621C", "T624C", "T627A", "G669C", "G672T", "T687C", "C690T", "C717A", "A759G", "C805T", "T807A", "A846G", "T855A", "C937A", "A951T", "A970T", "G971C", "C975T", "A1005C", "T1032C", "G1047T", "G1048A", "C1074T", "A1077T", "C1132A", "C1194T", "A1218T", "C1236T", "C1275T", "C1281A", "C1305A", "A1308T", "C1326T", "T1341A", "T1359A", "T1365C", "C1386A", "A1407T", "C1416T", "C1425A", "C1440T", "T1464C", "G1479A", "C1549T", "G1594T", "G1650A", "G1665A", "C1692A", "A1699G", "A1745G", "C1752T", "T1827C", "T1860A", "T1861C", "A1887G", "G1896A", "C1906A", "T1908A", "G1932A", "G1938A", "T1947G", "A1950T", "C1966T", "G1987A", "T1998A", "T2076C", "T2109C", "A2124G", "T2142A", "T2175C", "G2187A", "A2280G", "T2304A", "T2331C", "A2382G", "T2463C", "C2481T", "C2485T", "C2526T", "G2583A", "T2586A", "A2685C", "A2691C", "A2709G", "T2715A", "A2748T", "T2847A", "T2889A", "A2922C", "G2925A", "G2970A", "T2973A", "T3033A", "T3051A", "T3090C", "A3096T", "A3126T", "G3150A", "G3270A", "T3273C", "T3279A", "T3303A", "T3339A", "C3372T", "G3396T", "G3400A", "C3423A", "C3432T", "T3470C", "-3478T", "-3481A", "-3482A", "-3483T", "-3485C", "-3487A", "-3488C", "-3494A", "-3495T", "T3512C", "C3536G", "G3545A", "-3559G", "-3570A", "-3579G", "-3583T", "-3585A"], "Gc": ["D282E"], "Gn": ["T54A", "E206D", "D222E", "L361I", "V507I", "I550V", "K565R", "V646I"]}, "labels": {"aa": "Gc: D282E; Gn: T54A, E206D, D222E, L361I, V507I, I550V, K565R, V646I"}}, "children": [{"name": "PP_006W1Z1|13796_M|Argentina|1990|Argentina/1990-XX-XX", "node_attrs": {"div": 0.187408, "strain": {"value": "PP_006W1Z1|13796_M|Argentina|1990|Argentina/1990-XX-XX"}, "accession": "PP_006W1Z1", "author": {"author": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J.", "value": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J."}, "host": {"value": "mice and others"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "PP058741.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP058741.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2024-04-30"}, "PPX_accession": {"value": "PP_006W1Z1.1", "url": "https://pathoplexus.org/seq/PP_006W1Z1.1"}, "date": {"value": "1990-XX-XX"}, "abbr_authors": {"value": "Shedroff et al."}, "length": {"value": 3696}, "country": {"value": "Argentina"}, "institution": {"value": "Centers for Disease Control and Prevention, Viral Special Pathogens Branch"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["A2G", "C32T", "A37G", "G41C", "G47A", "A81G", "C87T", "G102T", "A105T", "C111A", "A113G", "C127T", "T129G", "G144T", "G153T", "T156G", "C157T", "T162A", "T168A", "A175G", "C180T", "A183T", "T186C", "G189C", "T195C", "A199G", "C202A", "A204T", "A205G", "T207C", "A209G", "C215T", "A216T", "T217G", "T222C", "T223C", "A259C", "A261C", "A262C", "C263T", "T267C", "G279A", "C288T", "T294G", "A309G", "A315G", "T321G", "A330G", "C345T", "A348G", "G355T", "A361G", "C362T", "C363A", "A366G", "C387A", "G396A", "A399T", "A405G", "C406T", "T408A", "C414T", "T418C", "G420A", "G423A", "A425G", "A426G", "A438T", "C441G", "C442T", "T453C", "C489G", "T490C", "C493T", "G495A", "A501G", "G507C", "A522T", "A526C", "G528C", "G558A", "A559G", "G564A", "A594G", "T597C", "A604G", "T612A", "T646A", "C656T", "T663A", "C671T", "T696C", "A700G", "C701T", "A702T", "C721A", "T727C", "A730G", "C753T", "T756C", "C765G", "A780T", "G783T", "T789C", "T790C", "T795C", "T801C", "T804C", "T816C", "T825A", "T834G", "C841T", "C852T", "C853A", "A871G", "T873G", "A874C", "G875A", "A876C", "A885C", "A892C", "G894T", "C903T", "T922G", "T930G", "C933T", "A942T", "A948T", "A952G", "A955G", "A960T", "G966A", "A982G", "T987A", "A994C", "A996G", "C1001T", "C1005T", "C1017T", "A1035G", "A1065G", "T1068C", "T1077C", "A1080T", "G1083A", "T1101C", "T1109A", "G1122A", "A1173G", "T1182A", "T1200C", "A1203C", "G1206A", "T1218C", "T1233A", "T1239A", "T1248C", "C1251T", "C1257T", "C1266A", "A1269C", "A1281G", "C1284T", "T1290A", "A1296G", "G1300C", "A1302T", "A1305G", "G1317A", "T1323C", "T1329A", "T1332C", "G1335A", "G1338A", "A1341G", "G1347A", "T1353G", "G1354A", "T1356C", "T1368C", "A1395G", "G1401T", "G1410C", "G1413A", "C1428T", "C1434T", "C1435T", "A1443T", "T1444C", "G1446A", "C1461A", "A1467G", "T1476C", "T1480C", "A1494C", "T1495C", "G1503T", "C1509T", "C1515T", "A1516C", "C1519T", "T1521G", "A1524T", "C1526T", "A1557G", "G1558A", "A1569G", "C1575T", "T1582A", "T1592C", "G1593A", "A1622G", "T1641A", "G1647A", "T1656A", "G1674A", "A1683C", "T1695C", "A1701C", "T1710G", "G1713A", "A1725T", "A1731G", "A1749G", "C1755T", "A1756C", "A1764G", "T1773A", "C1779T", "C1809T", "T1821C", "T1833C", "A1836G", "G1839A", "A1842T", "G1843A", "G1844A", "C1845T", "A1866G", "C1873T", "A1895G", "G1917T", "A1920G", "T1941C", "T1950C", "A1956C", "G1963A", "T1969C", "A1974C", "G1976T", "C1981T", "T1983G", "T1986C", "C1997T", "A1998G", "G2007A", "T2010C", "A2013T", "C2016T", "G2022A", "T2023G", "A2025T", "A2040T", "G2059C", "A2073T", "G2082A", "A2085G", "A2094C", "T2100A", "T2112A", "C2121T", "G2130A", "C2131T", "C2133A", "A2142G", "T2145C", "G2151A", "A2154G", "T2166A", "G2178A", "G2191A", "A2193C", "C2208T", "A2217G", "T2220A", "A2235G", "A2236G", "C2237T", "A2238G", "T2239C", "T2241A", "T2247C", "C2273A", "C2278A", "T2289C", "T2292C", "G2310A", "C2342A", "A2343T", "T2361A", "C2367T", "C2370T", "G2376A", "T2400C", "T2403G", "G2404A", "G2406A", "T2415C", "C2419T", "A2421G", "T2442C", "C2448A", "T2454C", "A2469G", "G2472A", "A2479G", "A2490G", "T2523C", "T2530C", "A2532T", "A2541T", "G2547T", "G2560A", "T2571A", "T2574C", "C2578T", "T2580A", "T2592C", "G2598A", "C2604T", "C2631G", "C2635T", "A2637G", "A2643G", "A2658C", "T2661C", "G2662T", "T2679C", "T2682C", "C2691T", "T2697A", "C2733T", "A2739G", "G2746C", "G2747A", "T2748C", "A2754G", "T2766A", "T2769C", "C2787T", "A2788G", "A2796C", "A2806T", "A2826T", "G2844T", "A2862C", "G2871A", "A2901C", "A2904T", "G2920A", "T2937G", "A2952G", "T2958C", "A2979G", "A2994T", "A3003T", "T3009A", "A3012G", "T3015G", "A3021T", "T3024C", "T3030C", "A3037G", "C3038T", "A3045T", "T3046C", "A3048C", "G3054A", "G3062A", "G3069T", "A3072G", "A3076G", "A3081G", "C3091T", "T3093A", "T3096C", "T3102C", "A3111T", "T3141C", "G3147A", "A3153G", "T3159G", "T3165C", "G3177T", "T3180A", "T3195C", "A3202T", "T3207G", "T3227C", "A3234T", "A3240C", "T3276C", "G3285A", "T3291C", "T3300A", "T3309A", "T3316G", "C3318T", "C3330T", "T3333A", "G3342A", "C3349T", "T3351A", "G3357T", "T3360A", "T3361C", "A3376G", "T3378A", "G3390C", "C3403T", "G3405A", "T3414A", "T3417A", "A3420C", "C3421T", "T3429C", "A3430C", "C3438T", "C3441G", "G3444A", "C3453T", "C3461A", "T3465G", "G3469T", "T3472G", "-3479A", "-3480G", "T3490A", "-3492G", "-3493T", "-3496C", "T3498-", "A3499-", "A3501C", "T3504A", "C3506-", "T3514C", "T3517A", "T3520C", "T3523A", "G3526A", "G3529A", "C3530T", "C3532-", "T3544C", "A3546G", "C3548T", "C3550A", "T3558-", "C3561G", "T3562C", "-3563A", "T3564C", "-3578C", "T3580C", "T3589A", "C3615A"], "Gc": ["S7A", "I19L", "V63I", "T70S", "T78V", "F79L", "A90E", "Q92K", "T113N", "V134I", "I159V", "V186I", "I209M", "A220S", "I262V", "M268L", "V306I", "T345V", "S353N", "I358V", "T400S", "D401E", "V408A", "F438V", "I458V", "I476L", "T486N"], "Gn": ["K21R", "I42V", "E46D", "I50V", "P51T", "I52V", "E53G", "A55V", "S56A", "T70P", "T71L", "A102S", "T104V", "K125R", "L131F", "Y147H", "I170V", "I185V", "S199T", "A202V", "T207I", "T217V", "L224M", "I227V", "T235S", "Y247H", "S274G", "R275H", "S291A", "I301V", "T302A", "D312E", "T317I", "V353E", "V435I", "M489L", "S492L", "A503T", "F511I", "M514A", "N524S", "F530L", "H553Q", "I569L", "G598N", "K614R", "K615R", "V638I", "C642F", "A649V"]}, "labels": {"aa": "Gc: S7A, I19L, V63I, T70S, T78V, F79L, A90E, Q92K, T113N, V134I, I159V, V186I, I209M, A220S, I262V, M268L, V306I, T345V, S353N, I358V, T400S, D401E, V408A, F438V, I458V, I476L, T486N; Gn: K21R, I42V, E46D, I50V, P51T, I52V, E53G, A55V, S56A, T70P, T71L, A102S, T104V, K125R, L131F, Y147H, I170V, I185V, S199T, A202V, T207I, T217V, L224M, I227V, T235S, Y247H, S274G, R275H, S291A, I301V, T302A, D312E, T317I, V353E, V435I, M489L, S492L, A503T, F511I, M514A, N524S, F530L, H553Q, I569L, G598N, K614R, K615R, V638I, C642F, A649V"}}}, {"name": "NODE_0000022", "node_attrs": {"div": 0.158296, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C32A", "G34T", "A38G", "A45G", "G47T", "A48T", "T67C", "T74C", "C75T", "T76C", "G78T", "C89A", "A93G", "A126G", "T141C", "T147C", "T171C", "T186A", "G189A", "C190T", "C202T", "A219T", "T223A", "A234G", "A240T", "C243T", "C255T", "A264G", "A271G", "T273C", "A276G", "C282T", "A284T", "T285C", "G291A", "A315C", "A327C", "A342C", "A348C", "A372T", "C379A", "G391A", "C393A", "T444G", "G456A", "C465T", "C474T", "A486T", "A508C", "A510G", "A525T", "G528A", "C531T", "A540T", "C546G", "T555C", "T570C", "C582A", "T591A", "T636A", "C637T", "C645A", "A648T", "G651A", "A675T", "A678C", "G685A", "A688T", "T699C", "A708G", "A711G", "T714G", "A717G", "G723A", "T727G", "G735A", "A750T", "A751C", "C753G", "G755C", "T756A", "C765T", "T768C", "A774G", "C781T", "T798G", "A810G", "C826T", "C829A", "A830T", "A843G", "T849C", "C852A", "A855G", "A858T", "G864A", "A876G", "A880C", "T888C", "A891T", "T897A", "C910G", "A912T", "C915A", "A927G", "G928A", "A936G", "G939A", "T954C", "T972A", "C978T", "T981C", "T984A", "C993A", "T1002A", "T1011A", "T1014C", "A1038G", "T1047C", "C1086A", "A1092G", "G1108A", "C1116T", "A1126G", "C1128A", "T1150C", "G1152A", "T1155A", "C1158A", "C1188T", "T1197C", "T1204C", "A1209G", "A1221T", "T1233C", "G1242A", "A1260C", "T1290C", "A1295G", "G1300A", "G1311A", "A1314G", "T1320A", "T1329C", "A1336C", "T1353C", "G1383C", "G1389A", "A1392C", "C1399T", "A1419T", "G1458A", "T1476A", "G1488C", "T1530A", "T1536C", "T1539C", "C1542G", "A1551G", "A1554T", "A1557T", "A1561G", "T1563A", "T1572A", "G1573A", "C1575A", "C1576T", "T1583G", "C1584T", "A1589G", "G1593T", "A1596G", "C1608T", "A1611C", "T1617C", "C1635T", "T1641C", "A1677T", "A1692G", "C1704T", "C1707T", "A1728G", "A1734T", "G1788A", "A1791T", "G1794A", "A1800T", "T1818C", "C1845A", "G1848A", "A1857G", "G1875T", "A1881G", "G1892A", "T1912C", "A1924C", "A1953G", "T1962C", "G1963C", "A1971G", "C1981A", "A1984G", "C2016A", "C2017A", "T2019G", "A2028T", "A2043T", "A2055T", "A2058G", "G2059A", "A2070G", "T2088C", "A2097G", "C2118T", "T2136A", "T2139C", "A2157G", "C2163T", "T2166C", "T2169C", "A2196T", "A2202T", "A2205G", "T2212C", "A2214C", "T2286C", "A2301G", "G2305T", "A2307T", "T2313C", "T2316C", "T2328C", "T2346C", "C2355T", "G2364T", "T2373A", "A2385T", "T2388G", "C2391T", "A2397T", "G2406T", "G2418A", "T2430G", "A2439C", "A2445G", "C2451T", "A2475T", "T2478C", "A2484G", "G2496A", "T2538A", "A2550G", "A2553C", "T2559A", "T2562G", "G2565C", "T2568A", "G2598T", "C2599T", "C2605T", "G2610T", "T2614C", "A2634C", "A2637T", "G2640A", "A2694T", "A2695C", "C2730A", "C2734A", "A2754C", "T2763A", "G2772A", "G2781A", "C2790T", "T2814A", "G2820A", "C2842T", "G2844A", "A2853T", "T2856C", "T2895A", "C2902A", "T2907C", "C2919T", "C2943T", "C2950T", "T2964C", "T2976C", "T2982C", "A3012T", "T3018C", "A3021G", "C3066T", "T3117A", "T3129C", "T3135C", "A3162G", "T3165A", "G3168T", "T3204A", "T3210C", "T3213C", "G3226C", "T3255A", "T3258A", "A3261C", "C3267T", "C3282T", "C3288T", "T3312C", "G3321A", "T3333C", "G3342T", "T3360C", "T3366C", "T3369G", "T3387A", "G3405C", "C3408T", "T3409C", "T3411C", "T3417C", "C3421A", "A3423G", "T3426C", "A3430G", "-3474A", "-3479C", "-3480A", "G3484C", "-3486T", "-3492A", "-3493G", "-3496T", "-3497A", "C3506T", "A3515T", "C3516T", "G3537A", "T3553G", "-3563T", "C3569G", "C3577T", "-3578G", "T3580A", "T3589C", "T3590A", "C3617T", "A3621T"], "Gc": ["L5M", "T70P", "A101S", "T231P", "H248G", "I355M", "V408L", "F469L", "L473M", "I476V"], "Gn": ["V8A", "S13Y", "P51S", "L58I", "T74A", "Y78F", "E88D", "V114I", "I153L", "V212I", "T213S", "L226V", "I234L", "H260I", "I277L", "P287A", "G293S", "A311T", "Q315K", "V353I", "I359V", "K415R", "I504V", "V508I", "F511C", "K513R", "M514V", "M579I", "V638L", "L644I", "I645V"]}, "labels": {"aa": "Gc: L5M, T70P, A101S, T231P, H248G, I355M, V408L, F469L, L473M, I476V; Gn: V8A, S13Y, P51S, L58I, T74A, Y78F, E88D, V114I, I153L, V212I, T213S, L226V, I234L, H260I, I277L, P287A, G293S, A311T, Q315K, V353I, I359V, K415R, I504V, V508I, F511C, K513R, M514V, M579I, V638L, L644I, I645V"}}, "children": [{"name": "NODE_0000023", "node_attrs": {"div": 0.167425, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A417G", "A432G", "C454T", "T1101C", "G1122A", "G1230A", "T1398A", "G1410A", "G1413A", "T1485C", "G1503A", "C1522T", "A1587G", "A1803G", "T1830C", "A1845G", "A1926C", "C1973T", "T1977C", "C2095T", "T2148C", "T2241C", "T2259C", "G2601A", "A2863G", "T2967C", "A2979G", "G3132A", "G3394A", "T3414C", "G3509A", "T3515C", "T3588C"], "Gc": ["T287A", "V464I"], "Gn": ["T641I"]}, "labels": {"aa": "Gc: T287A, V464I; Gn: T641I"}}, "children": [{"name": "NODE_0000024", "node_attrs": {"div": 0.172333, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G45A", "T48C", "C751T", "G846A", "T1275C", "G1347A", "A1389G", "T1399C", "G1917A", "G2022A", "C2133T", "C2175T", "T2199C", "T2397C", "T2475C", "G2547A", "C2685T", "A2835G", "T3009C"]}}, "children": [{"name": "PP_006W09H|AREB14/P3|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172334, "strain": {"value": "PP_006W09H|AREB14/P3|nan/XXXX-XX-XX"}, "accession": "PP_006W09H", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN850090.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850090.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2020-03-31"}, "PPX_accession": {"value": "PP_006W09H.1", "url": "https://pathoplexus.org/seq/PP_006W09H.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3643}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000025", "node_attrs": {"div": 0.172334, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W07M|AREB14/P1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172334, "strain": {"value": "PP_006W07M|AREB14/P1|nan/XXXX-XX-XX"}, "accession": "PP_006W07M", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN850088.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850088.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2020-03-31"}, "PPX_accession": {"value": "PP_006W07M.1", "url": "https://pathoplexus.org/seq/PP_006W07M.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3639}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W08K|AREB14/P2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172334, "strain": {"value": "PP_006W08K|AREB14/P2|nan/XXXX-XX-XX"}, "accession": "PP_006W08K", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN850089.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850089.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2020-03-31"}, "PPX_accession": {"value": "PP_006W08K.1", "url": "https://pathoplexus.org/seq/PP_006W08K.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3679}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000026", "node_attrs": {"div": 0.169795, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T909C", "A1497G", "A1569G", "G1968A", "T2523C", "T2745C", "A2988G", "T3372C"]}}, "children": [{"name": "NODE_0000027", "node_attrs": {"div": 0.170148, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G1671A"]}}, "children": [{"name": "PP_006W0BD|ARLA17/NRC2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.17485, "strain": {"value": "PP_006W0BD|ARLA17/NRC2|nan/XXXX-XX-XX"}, "accession": "PP_006W0BD", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN850092.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850092.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2020-03-31"}, "PPX_accession": {"value": "PP_006W0BD.1", "url": "https://pathoplexus.org/seq/PP_006W0BD.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3646}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["A57C", "G681A", "G1071A", "A1203G", "C1353T", "C1464T", "C1485T", "A1563G", "T1810C", "A1932G", "A2040G", "C2166T", "A2340G", "C2565T", "G3118T", "C3360T", "T3513C", "T3520C", "T3551C"], "Gc": ["A372S"], "Gn": ["E2D"]}, "labels": {"aa": "Gc: A372S; Gn: E2D"}}}, {"name": "PP_006VZ20|Epilink/96_2/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.172493, "strain": {"value": "PP_006VZ20|Epilink/96_2/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ20", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258189.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258189.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ20.1", "url": "https://pathoplexus.org/seq/PP_006VZ20.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3667}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["G264A", "G423A", "G1446A", "T1635C", "T2163C", "C2212A", "T2292C", "G2670A"], "Gc": ["P70T"]}, "labels": {"aa": "Gc: P70T"}}}]}, {"name": "NODE_0000028", "node_attrs": {"div": 0.171548, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T697C", "G747A", "G798A", "T912C", "A1086C", "T1332C"], "Gn": ["F216L"]}, "labels": {"aa": "Gn: F216L"}}, "children": [{"name": "PP_006VZ7Q|NRC-6/18_05/21/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.17691, "strain": {"value": "PP_006VZ7Q|NRC-6/18_05/21/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ7Q", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258194.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258194.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ7Q.1", "url": "https://pathoplexus.org/seq/PP_006VZ7Q.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3664}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["A31G", "T66C", "C180A", "G279A", "A303G", "G423A", "G480A", "C1435T", "A1458T", "C1929T", "T2112A", "C2133T", "T2163C", "C2212A", "A2622G", "C2631T", "C2787T", "A2796G", "T3030G"], "Gc": ["P70T"]}, "labels": {"aa": "Gc: P70T"}}}, {"name": "NODE_0000029", "node_attrs": {"div": 0.175889, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G546T", "A609G", "C633T", "T675C", "A1242G", "T1254C", "C1260T", "A1305G", "A1530C", "G1569A", "T1776C", "T1800C", "C2014T", "G2988A", "A3315T"]}}, "children": [{"name": "PP_006W01Z|Epuyen/18-19_Patient_2_11/23/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.17589, "strain": {"value": "PP_006W01Z|Epuyen/18-19_Patient_2_11/23/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006W01Z", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258215.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258215.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006W01Z.1", "url": "https://pathoplexus.org/seq/PP_006W01Z.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3386}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000030", "node_attrs": {"div": 0.17589, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.176182, "strain": {"value": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZAJ", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258197.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258197.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZAJ.1", "url": "https://pathoplexus.org/seq/PP_006VZAJ.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3655}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["G264A"]}}}, {"name": "NODE_0000031", "node_attrs": {"div": 0.175891, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZEA", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258201.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258201.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZEA.1", "url": "https://pathoplexus.org/seq/PP_006VZEA.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3651}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000032", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZNT", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258209.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258209.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZNT.1", "url": "https://pathoplexus.org/seq/PP_006VZNT.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3652}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000033", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZX9|Epuyen/18-19_Patient_6_11/25/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZX9|Epuyen/18-19_Patient_6_11/25/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZX9", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258219.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258219.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZX9.1", "url": "https://pathoplexus.org/seq/PP_006VZX9.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3669}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000034", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A2G"]}}, "children": [{"name": "PP_006VZMV|Epuyen/18-19_Patient_23_1/7/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZMV|Epuyen/18-19_Patient_23_1/7/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZMV", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258208.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258208.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZMV.1", "url": "https://pathoplexus.org/seq/PP_006VZMV.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3646}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000035", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZDC|Epuyen/18-19_Patient_15_12/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZDC|Epuyen/18-19_Patient_15_12/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZDC", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258200.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258200.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZDC.1", "url": "https://pathoplexus.org/seq/PP_006VZDC.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3633}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000036", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZKZ|Epuyen/18-19_Patient_20_1/1/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZKZ|Epuyen/18-19_Patient_20_1/1/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZKZ", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258206.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258206.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZKZ.1", "url": "https://pathoplexus.org/seq/PP_006VZKZ.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3655}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000037", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZY7|Epuyen/18-19_Patient_7_12/7/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZY7|Epuyen/18-19_Patient_7_12/7/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZY7", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258220.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258220.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZY7.1", "url": "https://pathoplexus.org/seq/PP_006VZY7.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3655}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000038", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZPR|Epuyen/18-19_Patient_25_1/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZPR|Epuyen/18-19_Patient_25_1/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZPR", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258210.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258210.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZPR.1", "url": "https://pathoplexus.org/seq/PP_006VZPR.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3654}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000039", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2C9|Epuyen|Argentina/2022-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006W2C9|Epuyen|Argentina/2022-XX-XX"}, "accession": "PP_006W2C9", "author": {"author": "Coelho, R.; Kehl, S.; Periolo, N.; Alonso, D.; Bellomo, C.; Martinez, V.", "value": "Coelho, R.; Kehl, S.; Periolo, N.; Alonso, D.; Bellomo, C.; Martinez, V."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "PQ215669.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PQ215669.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2024-09-25"}, "PPX_accession": {"value": "PP_006W2C9.1", "url": "https://pathoplexus.org/seq/PP_006W2C9.1"}, "date": {"value": "2022-XX-XX"}, "abbr_authors": {"value": "Coelho et al."}, "length": {"value": 3647}, "country": {"value": "Argentina"}, "institution": {"value": "INEI ANLIS, Virology"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["A3645C", "T3648G"]}}}, {"name": "NODE_0000040", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZH3|Epuyen/18-19_Patient_19_1/2/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZH3|Epuyen/18-19_Patient_19_1/2/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZH3", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258204.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258204.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZH3.1", "url": "https://pathoplexus.org/seq/PP_006VZH3.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3656}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000041", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZSK", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258213.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258213.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZSK.1", "url": "https://pathoplexus.org/seq/PP_006VZSK.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3647}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000042", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZVD|Epuyen/18-19_Patient_4_11/27/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZVD|Epuyen/18-19_Patient_4_11/27/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZVD", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258217.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258217.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZVD.1", "url": "https://pathoplexus.org/seq/PP_006VZVD.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3659}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["T3551C"]}}}, {"name": "NODE_0000043", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZTH|Epuyen/18-19_Patient_29_1/14/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZTH|Epuyen/18-19_Patient_29_1/14/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZTH", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258214.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258214.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZTH.1", "url": "https://pathoplexus.org/seq/PP_006VZTH.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3665}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000044", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZF8|Epuyen/18-19_Patient_17_12/31/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZF8|Epuyen/18-19_Patient_17_12/31/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZF8", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258202.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258202.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZF8.1", "url": "https://pathoplexus.org/seq/PP_006VZF8.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3659}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000045", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W001|Epuyen/18-19_Patient_9_12/12/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006W001|Epuyen/18-19_Patient_9_12/12/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006W001", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258222.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258222.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006W001.1", "url": "https://pathoplexus.org/seq/PP_006W001.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3669}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["G3C"]}}}, {"name": "NODE_0000046", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZCE|Epuyen/18-19_Patient_14_12/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZCE|Epuyen/18-19_Patient_14_12/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZCE", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258199.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258199.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZCE.1", "url": "https://pathoplexus.org/seq/PP_006VZCE.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3658}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000047", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZUF|Epuyen/18-19_Patient_3_11/20/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZUF|Epuyen/18-19_Patient_3_11/20/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZUF", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258216.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258216.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZUF.1", "url": "https://pathoplexus.org/seq/PP_006VZUF.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3654}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000048", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZRM|Epuyen/18-19_Patient_27_1/8/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZRM|Epuyen/18-19_Patient_27_1/8/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZRM", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258212.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258212.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZRM.1", "url": "https://pathoplexus.org/seq/PP_006VZRM.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3647}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000049", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZJ1|Epuyen/18-19_Patient_1_11/3/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZJ1|Epuyen/18-19_Patient_1_11/3/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZJ1", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258205.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258205.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZJ1.1", "url": "https://pathoplexus.org/seq/PP_006VZJ1.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3654}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000050", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZQP|Epuyen/18-19_Patient_26_1/4/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZQP|Epuyen/18-19_Patient_26_1/4/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZQP", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258211.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258211.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZQP.1", "url": "https://pathoplexus.org/seq/PP_006VZQP.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3654}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000051", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZG6|Epuyen/18-19_Patient_18_12/31/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZG6|Epuyen/18-19_Patient_18_12/31/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZG6", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258203.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258203.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZG6.1", "url": "https://pathoplexus.org/seq/PP_006VZG6.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3633}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000052", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ8N|Epuyen/18-19_Patient_10_12/10/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZ8N|Epuyen/18-19_Patient_10_12/10/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ8N", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258195.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258195.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ8N.1", "url": "https://pathoplexus.org/seq/PP_006VZ8N.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3639}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000053", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ9L", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258196.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258196.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ9L.1", "url": "https://pathoplexus.org/seq/PP_006VZ9L.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3645}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000054", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZZ5", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258221.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258221.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZZ5.1", "url": "https://pathoplexus.org/seq/PP_006VZZ5.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3654}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000055", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZWB", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258218.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258218.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZWB.1", "url": "https://pathoplexus.org/seq/PP_006VZWB.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3649}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000056", "node_attrs": {"div": 0.175892, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZLX|Epuyen/18-19_Patient_22_1/1/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZLX|Epuyen/18-19_Patient_22_1/1/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZLX", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258207.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258207.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZLX.1", "url": "https://pathoplexus.org/seq/PP_006VZLX.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3661}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZBG|Epuyen/18-19_Patient_13_12/24/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175892, "strain": {"value": "PP_006VZBG|Epuyen/18-19_Patient_13_12/24/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZBG", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258198.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258198.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZBG.1", "url": "https://pathoplexus.org/seq/PP_006VZBG.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3657}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000057", "node_attrs": {"div": 0.166204, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A159C", "C324T", "A609G", "C669T", "A996G", "G1038T", "G1050A", "G1083T", "G1092T", "T1104C", "G1293A", "A1546G", "A1914T", "T1995C", "C2409T", "C2448A", "T2580C", "A2895G", "T2916C", "C3018A", "A3081G", "T3225A", "A3345G", "C3435G", "T3465C"], "Gn": ["I499V"]}, "labels": {"aa": "Gn: I499V"}}, "children": [{"name": "NODE_0000058", "node_attrs": {"div": 0.171975, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C147T", "C699T", "G894A", "A1056G", "A1108G", "T1164G", "A1281C", "A1470C", "T1710C", "G2022A", "C2172T", "A2193G", "G2301A", "C2691T", "T2799C", "A2973G", "C3090T", "A3255G", "T3351C", "T3478G"], "Gn": ["I353V"]}, "labels": {"aa": "Gn: I353V"}}, "children": [{"name": "NODE_0000059", "node_attrs": {"div": 0.177619, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C111T", "C414T", "G420A", "T447C", "A456T", "G507A", "C555T", "C643T", "T675C", "T765G", "A771G", "T831C", "C1365T", "A1566G", "C1861T", "T2055C", "C2277T", "C2553T", "C2614T", "A2781G", "G3147A", "T3486C", "T3516C", "T3517C"]}}, "children": [{"name": "NODE_0000060", "node_attrs": {"div": 0.178429, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G444A", "T2052C"]}}, "children": [{"name": "PP_006W05R|1a|Chile/2012-11-XX", "node_attrs": {"div": 0.185908, "strain": {"value": "PP_006W05R|1a|Chile/2012-11-XX"}, "accession": "PP_006W05R", "author": {"author": "Ferres, M.; Martinez-Valdebenito, C.; Angulo, J.; Henriquez, C.; Vera-Otarola, J.; Vergara, M. J.; Perez, J.; Fernandez, J.; Sotomayor, V.; Tischler, N.; Vial, C.; Vial, P.; Mertz, G.; Le Corre, N.", "value": "Ferres, M.; Martinez-Valdebenito, C.; Angulo, J.; Henriquez, C.; Vera-Otarola, J.; Vergara, M. J.; Perez, J.; Fernandez, J.; Sotomayor, V.; Tischler, N.; Vial, C.; Vial, P.; Mertz, G.; Le Corre, N."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN807443.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN807443.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2021-03-28"}, "PPX_accession": {"value": "PP_006W05R.1", "url": "https://pathoplexus.org/seq/PP_006W05R.1"}, "date": {"value": "2012-11-XX"}, "abbr_authors": {"value": "Ferres et al."}, "length": {"value": 2031}, "country": {"value": "Chile"}, "institution": {"value": "Pontificia Universidad Catolica, Laboratorio De Infectologia"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["G144A", "G600A", "G603A", "C675T", "G714A", "T789C", "G945A", "T1263C", "A1341G", "G1413A", "T1455C", "T1662C", "G1674A", "T1758C", "C1818T"]}}}, {"name": "PP_006VZ3Y|NRC-2/97_06/01/1996|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.189709, "strain": {"value": "PP_006VZ3Y|NRC-2/97_06/01/1996|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ3Y", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258190.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258190.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ3Y.1", "url": "https://pathoplexus.org/seq/PP_006VZ3Y.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3646}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["G86A", "A303G", "C441T", "T456C", "C489T", "G564A", "C624T", "T666C", "G681A", "T912C", "G966A", "C1150T", "G1354A", "A1491G", "T1500C", "T1521A", "T1549C", "G1626A", "A1722T", "C1770T", "G1812A", "T1875G", "A1884G", "T1923C", "T1969C", "C2133T", "C2166T", "T2223C", "C2466T", "T2475C", "A2502G", "C2565A", "A2629G", "T2712C", "T2748G", "G3060A", "C3273T", "C3333T", "C3441T", "A3475G", "A3552G"], "Gc": ["I209V"], "Gn": ["C12Y", "V435I"]}, "labels": {"aa": "Gc: I209V; Gn: C12Y, V435I"}}}]}, {"name": "NODE_0000061", "node_attrs": {"div": 0.177818, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A993G"]}}, "children": [{"name": "NODE_0000062", "node_attrs": {"div": 0.189497, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G82A", "G264A", "A432G", "A513C", "G615A", "T637C", "T1026C", "G1056A", "T1077C", "G1179A", "C1260T", "T1308C", "T1356C", "G1371A", "G1542A", "T1594C", "T1662C", "G1671A", "T1758C", "C1929T", "G2082A", "T2160A", "C2169T", "T2247C", "C2328T", "C2346T", "G2388A", "G2436A", "C2556T", "T2605C", "A2613G", "T2769C", "T2775C", "G2781T", "C2799T", "A2863G", "C3129T", "T3243C", "A3468G"], "Gc": ["T287A"], "Gn": ["V11I"]}, "labels": {"aa": "Gc: T287A; Gn: V11I"}}, "children": [{"name": "PP_006VQHC|CHI-7913|Chile/XXXX-XX-XX", "node_attrs": {"div": 0.195425, "strain": {"value": "PP_006VQHC|CHI-7913|Chile/XXXX-XX-XX"}, "accession": "PP_006VQHC", "author": {"author": "Tischler, N. D.; Fernandez, J.; Muller, I.; Martinez, R.; Galeno, H.; Villagra, E.; Mora, J.; Ramirez, E.; Rosemblatt, M.; Valenzuela, P. D.; Mueller, I.; Valenzuela, P. D. T.", "value": "Tischler, N. D.; Fernandez, J.; Muller, I.; Martinez, R.; Galeno, H.; Villagra, E.; Mora, J.; Ramirez, E.; Rosemblatt, M.; Valenzuela, P. D.; Mueller, I.; Valenzuela, P. D. T."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "AY228238.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AY228238.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2003-05-01"}, "PPX_accession": {"value": "PP_006VQHC.1", "url": "https://pathoplexus.org/seq/PP_006VQHC.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tischler et al."}, "length": {"value": 3641}, "country": {"value": "Chile"}, "institution": {"value": "Fundacion Ciencia para la Vida, Departamento de Desarrollo e Investigacion"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["T119C", "T543A", "A709G", "A786G", "C831T", "A837G", "C841T", "C870T", "A894G", "G900A", "T912C", "A918G", "G927A", "T931C", "G1049A", "T1695C", "C2164T", "T2246C", "A2629G", "A3153G", "A3645C", "T3649A", "G3650A", "T3652C"], "Gc": ["P54S", "I81T", "I209V"], "Gn": ["I23T", "S164R", "K220E", "Y294H", "R333K"]}, "labels": {"aa": "Gc: P54S, I81T, I209V; Gn: I23T, S164R, K220E, Y294H, R333K"}}}, {"name": "NODE_0000063", "node_attrs": {"div": 0.190028, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T826C", "A864G"]}}, "children": [{"name": "PP_006W2HY|CHI-7913|Chile/1999-XX-XX", "node_attrs": {"div": 0.190029, "strain": {"value": "PP_006W2HY|CHI-7913|Chile/1999-XX-XX"}, "accession": "PP_006W2HY", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "PV808471.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808471.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2025-11-04"}, "PPX_accession": {"value": "PP_006W2HY.1", "url": "https://pathoplexus.org/seq/PP_006W2HY.1"}, "date": {"value": "1999-XX-XX"}, "abbr_authors": {"value": "Barrera et al."}, "length": {"value": 3670}, "country": {"value": "Chile"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0CB|CHI-7913|Chile/1999-XX-XX", "node_attrs": {"div": 0.190029, "strain": {"value": "PP_006W0CB|CHI-7913|Chile/1999-XX-XX"}, "accession": "PP_006W0CB", "author": {"author": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D.", "value": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MT956619.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MT956619.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2021-02-27"}, "PPX_accession": {"value": "PP_006W0CB.1", "url": "https://pathoplexus.org/seq/PP_006W0CB.1"}, "date": {"value": "1999-XX-XX"}, "abbr_authors": {"value": "Warner et al."}, "length": {"value": 3641}, "country": {"value": "Chile"}, "institution": {"value": "Public Health Agency of Canada, Special Pathogens"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000064", "node_attrs": {"div": 0.182005, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C342T", "T618C", "A1011G", "A1050G", "A1242G", "T1275C", "C1464T", "C1995T", "C2139T", "A2211G", "T2391C", "C2787T", "G3060T", "C3213T", "C3485T", "A3645C"]}}, "children": [{"name": "NODE_0000065", "node_attrs": {"div": 0.187953, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C441T", "T456C", "G468A", "C489A", "A582G", "G855A", "A1035C", "G1209A", "T1236C", "A1395G", "C1515T", "A1794G", "G1854A", "T2100C", "G2625A", "G2628A", "T2676C", "A2788G", "C2829T", "A2988G", "C3484T", "T3544C", "C3582T"], "Gc": ["I262V"], "Gn": ["L328F"]}, "labels": {"aa": "Gc: I262V; Gn: L328F"}}, "children": [{"name": "PP_006VZ6S|NRC-5/18_06/01/2018|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.194185, "strain": {"value": "PP_006VZ6S|NRC-5/18_06/01/2018|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ6S", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258193.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258193.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ6S.1", "url": "https://pathoplexus.org/seq/PP_006VZ6S.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3650}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["T90C", "C679T", "C841T", "A864G", "G927A", "C1029T", "C1047T", "C1055T", "A1155G", "T1308G", "T1365C", "C1536T", "T1593G", "A1683G", "A1788G", "T1950G", "G1953A", "G1954A", "A2664T", "A2715G", "G2781A", "C3645A"], "Gn": ["A335V", "I579M", "V635I"]}, "labels": {"aa": "Gn: A335V, I579M, V635I"}}}, {"name": "PP_006VP2A|AH-1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.191147, "strain": {"value": "PP_006VP2A|AH-1|nan/XXXX-XX-XX"}, "accession": "PP_006VP2A", "author": {"author": "Padula, P. J.; Sanchez, A. J.; Edelstein, A.; Nichol, S. T.", "value": "Padula, P. J.; Sanchez, A. J.; Edelstein, A.; Nichol, S. T."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "AF324901.2", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF324901.2"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2001-03-01"}, "PPX_accession": {"value": "PP_006VP2A.1", "url": "https://pathoplexus.org/seq/PP_006VP2A.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Padula et al."}, "length": {"value": 3668}, "institution": {"value": "Instituto Nacional de Enfermedades Infecciosas, A.N.L.I.S. Dr. Carlos G. Malbran, Departamento de Virologia"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["G264A", "G360A", "G893T", "G993A", "C1001T", "A1269G", "T1594C", "T1662C", "A2022G", "A2283G", "A2469G", "C3591T"], "Gn": ["R281I", "T317I"]}, "labels": {"aa": "Gn: R281I, T317I"}}}]}, {"name": "NODE_0000066", "node_attrs": {"div": 0.190308, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T243C", "T408C", "A522T", "A645G", "G771A", "G774A", "G936A", "T1038A", "C1150T", "C1257T", "A1359G", "G1692A", "G1728A", "T1899C", "C1905T", "A1938G", "G1953A", "G1971A", "C2014T", "T2052C", "G2124A", "T2241C", "C2419T", "C2463T", "A2844G", "G3145A", "G3435A", "C3470T", "C3486T"], "Gc": ["V381I"]}, "labels": {"aa": "Gc: V381I"}}, "children": [{"name": "PP_006VWNW|LS-CH2016|Switzerland/2016-12-23", "node_attrs": {"div": 0.1906, "strain": {"value": "PP_006VWNW|LS-CH2016|Switzerland/2016-12-23"}, "accession": "PP_006VWNW", "author": {"author": "Beuret, C. M.; Siegrist, D.", "value": "Beuret, C. M.; Siegrist, D."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "KY604962.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/KY604962.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "Europe"}, "date_released": {"value": "2018-01-31"}, "PPX_accession": {"value": "PP_006VWNW.1", "url": "https://pathoplexus.org/seq/PP_006VWNW.1"}, "date": {"value": "2016-12-23"}, "abbr_authors": {"value": "Beuret et al."}, "length": {"value": 3668}, "country": {"value": "Switzerland"}, "institution": {"value": "Spiez Laboratory, Virology"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["A44T", "A309G", "T3606C"]}}}, {"name": "NODE_0000067", "node_attrs": {"div": 0.1906, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T801C"]}}, "children": [{"name": "PP_006W0X6|ANDV-CH-LS-2016|Switzerland/2016-XX-XX", "node_attrs": {"div": 0.190601, "strain": {"value": "PP_006W0X6|ANDV-CH-LS-2016|Switzerland/2016-XX-XX"}, "accession": "PP_006W0X6", "author": {"author": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N.", "value": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OR405524.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR405524.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "Europe"}, "date_released": {"value": "2023-10-02"}, "PPX_accession": {"value": "PP_006W0X6.1", "url": "https://pathoplexus.org/seq/PP_006W0X6.1"}, "date": {"value": "2016-XX-XX"}, "abbr_authors": {"value": "Zuest et al."}, "length": {"value": 3606}, "country": {"value": "Switzerland"}, "institution": {"value": "Spiez Laboratory, Biology Department"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0W8|ANDV-CH-LS-2022|Switzerland/2022-XX-XX", "node_attrs": {"div": 0.191189, "strain": {"value": "PP_006W0W8|ANDV-CH-LS-2022|Switzerland/2022-XX-XX"}, "accession": "PP_006W0W8", "author": {"author": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N.", "value": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OR405521.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR405521.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "Europe"}, "date_released": {"value": "2023-10-02"}, "PPX_accession": {"value": "PP_006W0W8.1", "url": "https://pathoplexus.org/seq/PP_006W0W8.1"}, "date": {"value": "2022-XX-XX"}, "abbr_authors": {"value": "Zuest et al."}, "length": {"value": 3425}, "country": {"value": "Switzerland"}, "institution": {"value": "Spiez Laboratory, Biology Department"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["G844A", "A2279G"], "Gc": ["Q92R"], "Gn": ["E265K"]}, "labels": {"aa": "Gc: Q92R; Gn: E265K"}}}]}]}]}]}]}, {"name": "NODE_0000068", "node_attrs": {"div": 0.177528, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C315T", "A381G", "A391G", "C489T", "A645G", "G714A", "C849T", "C1515A", "G1596A", "C1905T", "A2622G", "T2898C", "C2964T", "A3117G", "C3210T", "T3214A", "G3430A"], "Gc": ["S404A", "V476I"], "Gn": ["I114V"]}, "labels": {"aa": "Gc: S404A, V476I; Gn: I114V"}}, "children": [{"name": "NODE_0000069", "node_attrs": {"div": 0.185699, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G45A", "T90C", "T312C", "A339C", "A393G", "G507A", "T987C", "G1122A", "A1395G", "T1440C", "A1476G", "T1521C", "G1626A", "G1692A", "T1791C", "A1797G", "G1857A", "T1989C", "G2193A", "A2325G", "G2550A", "C2649T", "A2760T", "T2784C", "G2871A", "A2931G", "G3162A", "C3213T", "A3315C", "T3571G"], "Gc": ["A404T"]}, "labels": {"aa": "Gc: A404T"}}, "children": [{"name": "NODE_0000070", "node_attrs": {"div": 0.190099, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C363T", "T372C", "C454T", "G628A", "C643T", "G1209A", "G1338A", "A1359G", "C1488A", "C1644T", "C1668T", "G1968A", "A2727T", "A2913G", "G3493T", "T3496C"], "Gn": ["A193T"]}, "labels": {"aa": "Gn: A193T"}}, "children": [{"name": "PP_006VZ4W|NRC-3/18_06/01/1997|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.1901, "strain": {"value": "PP_006VZ4W|NRC-3/18_06/01/1997|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ4W", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258191.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258191.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ4W.1", "url": "https://pathoplexus.org/seq/PP_006VZ4W.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3655}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZ5U|NRC-4/18_06/01/2018|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.190391, "strain": {"value": "PP_006VZ5U|NRC-4/18_06/01/2018|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ5U", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN258192.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258192.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ5U.1", "url": "https://pathoplexus.org/seq/PP_006VZ5U.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "length": {"value": 3658}, "country": {"value": "Argentina"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["A3031G"], "Gc": ["T343A"]}, "labels": {"aa": "Gc: T343A"}}}]}, {"name": "NODE_0000071", "node_attrs": {"div": 0.191306, "outbreak": {"value": "2026-cruise-ship"}}, "branch_attrs": {"mutations": {"nuc": ["A651G", "T663C", "T675C", "G1071A", "C1150T", "G1164A", "G1167A", "G1230A", "C1598T", "A1764G", "C2286T", "T2412C", "C2419T", "A2541G", "C2614T", "T2697C", "A2925G", "A3075G", "T3156A", "C3426T", "C3477T", "T3483C", "A3497G", "T3500C"], "Gn": ["T516I"]}, "labels": {"aa": "Gn: T516I", "outbreak": "2026-cruise-ship"}}, "children": [{"name": "PP_006WANE|PP_006WANE|South Africa/2026-05-02", "node_attrs": {"div": 0.191599, "strain": {"value": "PP_006WANE|PP_006WANE|South Africa/2026-05-02"}, "accession": "PP_006WANE", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "host": {"value": "human"}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "outbreak": {"value": "2026-cruise-ship"}, "restrictedUntil": {"value": "2027-05-11"}, "region": {"value": "Africa"}, "date_released": {"value": "2026-05-11"}, "PPX_accession": {"value": "PP_006WANE.1", "url": "https://pathoplexus.org/seq/PP_006WANE.1"}, "date": {"value": "2026-05-02"}, "abbr_authors": {"value": "Weyer et al."}, "length": {"value": 3595}, "country": {"value": "South Africa"}, "institution": {"value": "National Institute of Communicable Diseases"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["G2628A", "A2629-"], "Gc": ["I209-"]}, "labels": {"aa": "Gc: I209-"}}}, {"name": "NODE_0000072", "node_attrs": {"div": 0.191307, "outbreak": {"value": "2026-cruise-ship"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W3U9|PP_006W3U9|Netherlands/2026-05-06", "node_attrs": {"div": 0.191308, "strain": {"value": "PP_006W3U9|PP_006W3U9|Netherlands/2026-05-06"}, "accession": "PP_006W3U9", "author": {"author": "Oude Munnink, B. B.; Nieuwenhuijsse, D.; van der Boom, S.; Zaeck, L.; Boter, M.; Cassidy, H.; Schuele, L.; Molenkamp, R.; van der Eijk, A.; GeurtsvanKessel, C.; Koopmans, M.", "value": "Oude Munnink, B. B.; Nieuwenhuijsse, D.; van der Boom, S.; Zaeck, L.; Boter, M.; Cassidy, H.; Schuele, L.; Molenkamp, R.; van der Eijk, A.; GeurtsvanKessel, C.; Koopmans, M."}, "host": {"value": "human"}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "outbreak": {"value": "2026-cruise-ship"}, "restrictedUntil": {"value": "2027-05-10"}, "region": {"value": "Europe"}, "date_released": {"value": "2026-05-10"}, "PPX_accession": {"value": "PP_006W3U9.1", "url": "https://pathoplexus.org/seq/PP_006W3U9.1"}, "date": {"value": "2026-05-06"}, "abbr_authors": {"value": "Oude Munnink et al."}, "length": {"value": 3561}, "country": {"value": "Netherlands"}, "institution": {"value": "ErasmusMC"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000073", "node_attrs": {"div": 0.191308, "outbreak": {"value": "2026-cruise-ship"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W5U7|PP_006W5U7|Switzerland/2026-05-04", "node_attrs": {"div": 0.191309, "strain": {"value": "PP_006W5U7|PP_006W5U7|Switzerland/2026-05-04"}, "accession": "PP_006W5U7", "author": {"author": "Bloemberg, Guido; Chudzinski, Valentin; Cordey, Samuel; Huber, Michael; Laubscher, Florian; P\u00e9rez-Rodr\u00edguez, Francisco-Javier; Pichler, Ian; Schibler, Manuel; Zingg, Walter; Thomasson, Valentine; Ziltener, Gabriela; Eckerle, Isabella", "value": "Bloemberg, Guido; Chudzinski, Valentin; Cordey, Samuel; Huber, Michael; Laubscher, Florian; P\u00e9rez-Rodr\u00edguez, Francisco-Javier; Pichler, Ian; Schibler, Manuel; Zingg, Walter; Thomasson, Valentine; Ziltener, Gabriela; Eckerle, Isabella"}, "host": {"value": "human"}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "outbreak": {"value": "2026-cruise-ship"}, "restrictedUntil": {"value": "2027-05-10"}, "region": {"value": "Europe"}, "date_released": {"value": "2026-05-10"}, "PPX_accession": {"value": "PP_006W5U7.3", "url": "https://pathoplexus.org/seq/PP_006W5U7.3"}, "date": {"value": "2026-05-04"}, "abbr_authors": {"value": "Bloemberg et al."}, "length": {"value": 3657}, "country": {"value": "Switzerland"}, "institution": {"value": "University of Zurich, Zurich, Switzerland; University Hospitals of Zurich, Zurich Switzerland; University Hospitals of Geneva, Geneva, Switzerland"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W6RC|PP_006W6RC|Netherlands/2026-05-03", "node_attrs": {"div": 0.191309, "strain": {"value": "PP_006W6RC|PP_006W6RC|Netherlands/2026-05-03"}, "accession": "PP_006W6RC", "author": {"author": "Diagne, Moussa Moise; Sankhe, Safietou; Ndiaye, Ndeye Awa; Kane, Mouhamed; Diop, Seynabou M. B. S.; Seye, Seynabou; Fall, Gamou", "value": "Diagne, Moussa Moise; Sankhe, Safietou; Ndiaye, Ndeye Awa; Kane, Mouhamed; Diop, Seynabou M. B. S.; Seye, Seynabou; Fall, Gamou"}, "host": {"value": "human"}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "outbreak": {"value": "2026-cruise-ship"}, "restrictedUntil": {"value": "2027-05-11"}, "region": {"value": "Europe"}, "date_released": {"value": "2026-05-11"}, "PPX_accession": {"value": "PP_006W6RC.1", "url": "https://pathoplexus.org/seq/PP_006W6RC.1"}, "date": {"value": "2026-05-03"}, "abbr_authors": {"value": "Diagne et al."}, "length": {"value": 3633}, "country": {"value": "Netherlands"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["C3500T"]}}}]}]}]}]}, {"name": "NODE_0000074", "node_attrs": {"div": 0.183583, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C285T", "A513G", "T531C", "C570T", "C721T", "A723G", "T912C", "C1257T", "A1719G", "A1785G", "C1827T", "A1938G", "A2094G", "A2142G", "T2163C", "T2697C", "C3123T", "A3150G", "T3159C", "A3214G", "C3477T", "A3482G", "T3490A"]}}, "children": [{"name": "NODE_0000075", "node_attrs": {"div": 0.189453, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C363T", "G564A", "A576G", "G783A", "G900A", "C1014T", "C1197T", "A1311G", "A1737G", "G1878A", "T2028C", "T2172C", "A2469G", "T2598C", "G2895A", "A2913C", "T3030C", "C3042T", "G3054A", "C3213T"]}}, "children": [{"name": "PP_006W2JW|CHI-Hu13724_P1|Chile/2024-07-24", "node_attrs": {"div": 0.189454, "strain": {"value": "PP_006W2JW|CHI-Hu13724_P1|Chile/2024-07-24"}, "accession": "PP_006W2JW", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "PV808474.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808474.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2025-11-04"}, "PPX_accession": {"value": "PP_006W2JW.1", "url": "https://pathoplexus.org/seq/PP_006W2JW.1"}, "date": {"value": "2024-07-24"}, "abbr_authors": {"value": "Barrera et al."}, "length": {"value": 3664}, "country": {"value": "Chile"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000076", "node_attrs": {"div": 0.189454, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2F3|136|Chile/2024-06-27", "node_attrs": {"div": 0.189454, "strain": {"value": "PP_006W2F3|136|Chile/2024-06-27"}, "accession": "PP_006W2F3", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "PV796317.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV796317.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2025-11-04"}, "PPX_accession": {"value": "PP_006W2F3.1", "url": "https://pathoplexus.org/seq/PP_006W2F3.1"}, "date": {"value": "2024-06-27"}, "abbr_authors": {"value": "Barrera et al."}, "length": {"value": 3657}, "country": {"value": "Chile"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "division": {"value": "Los Rios CL"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000077", "node_attrs": {"div": 0.189454, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2KU|CHI-Hu13724_P2|Chile/2024-07-30", "node_attrs": {"div": 0.189454, "strain": {"value": "PP_006W2KU|CHI-Hu13724_P2|Chile/2024-07-30"}, "accession": "PP_006W2KU", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "PV808477.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808477.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2025-11-04"}, "PPX_accession": {"value": "PP_006W2KU.1", "url": "https://pathoplexus.org/seq/PP_006W2KU.1"}, "date": {"value": "2024-07-30"}, "abbr_authors": {"value": "Barrera et al."}, "length": {"value": 3659}, "country": {"value": "Chile"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W2G1|137|Chile/2024-06-27", "node_attrs": {"div": 0.189454, "strain": {"value": "PP_006W2G1|137|Chile/2024-06-27"}, "accession": "PP_006W2G1", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "host": {"value": "human"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "PV808468.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808468.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2025-11-04"}, "PPX_accession": {"value": "PP_006W2G1.1", "url": "https://pathoplexus.org/seq/PP_006W2G1.1"}, "date": {"value": "2024-06-27"}, "abbr_authors": {"value": "Barrera et al."}, "length": {"value": 3654}, "country": {"value": "Chile"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "division": {"value": "Los Rios CL"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000078", "node_attrs": {"div": 0.184473, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G927A", "T1473G", "A2727G"]}}, "children": [{"name": "PP_006W0SG|Andes/ARG_p19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.184765, "strain": {"value": "PP_006W0SG|Andes/ARG_p19|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0SG", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OP555727.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555727.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2023-10-10"}, "PPX_accession": {"value": "PP_006W0SG.1", "url": "https://pathoplexus.org/seq/PP_006W0SG.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3660}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["T340C"], "Gn": ["S97P"]}, "labels": {"aa": "Gn: S97P"}}}, {"name": "NODE_0000079", "node_attrs": {"div": 0.184474, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0PN|Andes/ARG-O.l.444|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.184475, "strain": {"value": "PP_006W0PN|Andes/ARG-O.l.444|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0PN", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "host": {"value": "mice and others"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OP555724.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555724.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2023-10-10"}, "PPX_accession": {"value": "PP_006W0PN.1", "url": "https://pathoplexus.org/seq/PP_006W0PN.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3555}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000080", "node_attrs": {"div": 0.184475, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0TE|Andes/ARG-M.a.|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.184476, "strain": {"value": "PP_006W0TE|Andes/ARG-M.a.|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0TE", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "host": {"value": "Syrian golden hamster; Syrian golden hamsters; Syrian hamster; golden hamster"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OP555729.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555729.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2023-10-10"}, "PPX_accession": {"value": "PP_006W0TE.1", "url": "https://pathoplexus.org/seq/PP_006W0TE.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3651}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000081", "node_attrs": {"div": 0.184476, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0RJ|Andes/ARG_p9|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.184476, "strain": {"value": "PP_006W0RJ|Andes/ARG_p9|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0RJ", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OP555726.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555726.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2023-10-10"}, "PPX_accession": {"value": "PP_006W0RJ.1", "url": "https://pathoplexus.org/seq/PP_006W0RJ.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3661}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0QL|Andes/ARG_p3|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.184476, "strain": {"value": "PP_006W0QL|Andes/ARG_p3|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0QL", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "OP555725.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555725.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2023-10-10"}, "PPX_accession": {"value": "PP_006W0QL.1", "url": "https://pathoplexus.org/seq/PP_006W0QL.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3652}, "country": {"value": "Argentina"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}, {"name": "NODE_0000082", "node_attrs": {"div": 0.181518, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T190C", "T231C", "T243C", "C345T", "C363T", "C414T", "T447C", "C570T", "T675C", "G681T", "G720A", "G900A", "A918G", "G936A", "C1032T", "G1071A", "C1197T", "G1206A", "G1209A", "C1251A", "C1266T", "A1300C", "A1302T", "C1353T", "A1491G", "C1539T", "A1563C", "A1581G", "G1671A", "C1755T", "T2077C", "A2085G", "T2115C", "C2121T", "G2205A", "A2217G", "A2325G", "G2388A", "A2433G", "A2502T", "G2550A", "G2628A", "C2634T", "C2733T", "T2910C", "G3060A", "T3093A", "T3180C", "C3273T", "C3333T", "C3433T", "C3438T"]}}, "children": [{"name": "PP_006W0AF|ARCH14/NRC1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.200982, "strain": {"value": "PP_006W0AF|ARCH14/NRC1|nan/XXXX-XX-XX"}, "accession": "PP_006W0AF", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN850091.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850091.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2020-03-31"}, "PPX_accession": {"value": "PP_006W0AF.1", "url": "https://pathoplexus.org/seq/PP_006W0AF.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "length": {"value": 3643}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["G45A", "C111T", "A132G", "G153A", "T219A", "C288A", "A366G", "C454T", "C493T", "A582G", "T597C", "C660T", "C678T", "G714A", "T804C", "A948G", "T951G", "C1134T", "T1263C", "T1356C", "A1359G", "C1365T", "T1422C", "A1494G", "A1569G", "C1585T", "T1620C", "T1635C", "A1731G", "C1827T", "G1881A", "A1893G", "A1932G", "G1971A", "C1995T", "T2091C", "G2157A", "C2316T", "A2343G", "T2358C", "T2364G", "C2367T", "A2373G", "C2419T", "A2479C", "T2610C", "C2631T", "C2685T", "A2727G", "T2775C", "T2793A", "C2916T", "C2964T", "C3038A", "A3075G", "G3081A", "T3102C", "G3147C", "G3177A", "A3189G", "T3198C", "T3222C", "C3330T", "A3363G", "G3369A", "C3411T", "A3501C", "C3532T", "T3544C", "A3547G", "T3549C", "A3556G", "T3563G", "A3567G", "G3569A", "C3582T"], "Gc": ["I159L", "T345N"]}, "labels": {"aa": "Gc: I159L, T345N"}}}, {"name": "NODE_0000083", "node_attrs": {"div": 0.206757, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C74T", "A114G", "T174C", "G192A", "G264A", "A339G", "G360A", "C387T", "T394C", "T408C", "C462T", "G468A", "G507A", "C508T", "T525A", "C643T", "A651G", "G747A", "A756G", "A771G", "A786G", "A837G", "C841T", "C870T", "T912C", "G927A", "T931C", "A1087G", "T1109C", "C1224T", "G1317A", "G1374A", "C1468T", "A1470G", "G1503A", "A1560G", "A1599G", "G1660A", "T1695C", "G1728A", "A1749G", "T1758C", "C1770T", "A1863G", "G1878A", "T1914C", "C1924A", "C1929T", "T2028C", "A2040G", "A2079C", "T2145C", "G2151A", "T2215C", "A2235G", "T2391C", "T2412C", "G2430T", "C2463T", "C2478T", "A2535G", "C2553T", "T2574A", "C2580T", "A2640G", "T2697C", "A2718G", "T2745C", "C2754T", "T2868C", "T2883C", "T2937C", "T2977C", "T3030C", "G3118A", "G3162A", "T3168C", "G3219A", "C3223T", "A3240T", "A3252G", "C3261A", "A3450G", "A3474G", "A3482C", "T3496C", "T3515C", "T3516C", "A3645C"], "Gc": ["A372T"], "Gn": ["A8V", "Y294H", "I346V", "I353T", "V537I"]}, "labels": {"aa": "Gc: A372T; Gn: A8V, Y294H, I346V, I353T, V537I"}}, "children": [{"name": "NODE_0000084", "node_attrs": {"div": 0.20705, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T825C"]}}, "children": [{"name": "NODE_0000085", "node_attrs": {"div": 0.207343, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A413T"], "Gn": ["D121V"]}, "labels": {"aa": "Gn: D121V"}}, "children": [{"name": "PP_006VYRN|ANDV/Oligoryzomys longicaudatus/CHL/9717869_11/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207344, "strain": {"value": "PP_006VYRN|ANDV/Oligoryzomys longicaudatus/CHL/9717869_11/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYRN", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095812.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095812.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYRN.1", "url": "https://pathoplexus.org/seq/PP_006VYRN.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000086", "node_attrs": {"div": 0.207344, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYVE|ANDV/Oligoryzomys longicaudatus/CHL/9717869_10/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207344, "strain": {"value": "PP_006VYVE|ANDV/Oligoryzomys longicaudatus/CHL/9717869_10/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYVE", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095816.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095816.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYVE.1", "url": "https://pathoplexus.org/seq/PP_006VYVE.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3418}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VYQQ|ANDV/Oligoryzomys longicaudatus/CHL/9717869_12/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207344, "strain": {"value": "PP_006VYQQ|ANDV/Oligoryzomys longicaudatus/CHL/9717869_12/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYQQ", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095811.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095811.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYQQ.1", "url": "https://pathoplexus.org/seq/PP_006VYQQ.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000087", "node_attrs": {"div": 0.207051, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYH4|ANDV/Oligoryzomys longicaudatus/CHL/9717869_02/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207052, "strain": {"value": "PP_006VYH4|ANDV/Oligoryzomys longicaudatus/CHL/9717869_02/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYH4", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095804.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095804.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYH4.1", "url": "https://pathoplexus.org/seq/PP_006VYH4.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000088", "node_attrs": {"div": 0.207052, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000089", "node_attrs": {"div": 0.207638, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G2699T", "A2866G"], "Gc": ["S232I", "N288D"]}, "labels": {"aa": "Gc: S232I, N288D"}}, "children": [{"name": "PP_006VYLY|ANDV/Oligoryzomys longicaudatus/CHL/9717869_24/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207931, "strain": {"value": "PP_006VYLY|ANDV/Oligoryzomys longicaudatus/CHL/9717869_24/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYLY", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095807.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095807.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYLY.1", "url": "https://pathoplexus.org/seq/PP_006VYLY.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["G2935A"], "Gc": ["V311I"]}, "labels": {"aa": "Gc: V311I"}}}, {"name": "NODE_0000090", "node_attrs": {"div": 0.207931, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G1682A"], "Gn": ["G544E"]}, "labels": {"aa": "Gn: G544E"}}, "children": [{"name": "PP_006VYSL|ANDV/Oligoryzomys longicaudatus/CHL/9717869_23/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207932, "strain": {"value": "PP_006VYSL|ANDV/Oligoryzomys longicaudatus/CHL/9717869_23/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYSL", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095813.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095813.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYSL.1", "url": "https://pathoplexus.org/seq/PP_006VYSL.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VYMW|ANDV/Oligoryzomys longicaudatus/CHL/9717869_22/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207932, "strain": {"value": "PP_006VYMW|ANDV/Oligoryzomys longicaudatus/CHL/9717869_22/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYMW", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095808.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095808.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYMW.1", "url": "https://pathoplexus.org/seq/PP_006VYMW.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000091", "node_attrs": {"div": 0.207638, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A1667C", "A1835C"], "Gn": ["Y539S", "K595T"]}, "labels": {"aa": "Gn: Y539S, K595T"}}, "children": [{"name": "NODE_0000092", "node_attrs": {"div": 0.20793, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G423T"], "Gn": ["K124N"]}, "labels": {"aa": "Gn: K124N"}}, "children": [{"name": "PP_006VXRP|ANDV/Oligoryzomys longicaudatus/CHL/9717869_12/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207931, "strain": {"value": "PP_006VXRP|ANDV/Oligoryzomys longicaudatus/CHL/9717869_12/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXRP", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK059786.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059786.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXRP.1", "url": "https://pathoplexus.org/seq/PP_006VXRP.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000093", "node_attrs": {"div": 0.208516, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A1878C", "C2537T"], "Gc": ["T178I"], "Gn": ["K609N"]}, "labels": {"aa": "Gc: T178I; Gn: K609N"}}, "children": [{"name": "PP_006VY9M|ANDV/Oligoryzomys longicaudatus/CHL/9717869_44/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208517, "strain": {"value": "PP_006VY9M|ANDV/Oligoryzomys longicaudatus/CHL/9717869_44/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY9M", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK513898.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513898.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY9M.1", "url": "https://pathoplexus.org/seq/PP_006VY9M.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000094", "node_attrs": {"div": 0.208517, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VY5V|ANDV/Oligoryzomys longicaudatus/CHL/9717869_45/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208517, "strain": {"value": "PP_006VY5V|ANDV/Oligoryzomys longicaudatus/CHL/9717869_45/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY5V", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK513894.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513894.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY5V.1", "url": "https://pathoplexus.org/seq/PP_006VY5V.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VXNV|ANDV/Oligoryzomys longicaudatus/CHL/9717869_10/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208517, "strain": {"value": "PP_006VXNV|ANDV/Oligoryzomys longicaudatus/CHL/9717869_10/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXNV", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK059783.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059783.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXNV.1", "url": "https://pathoplexus.org/seq/PP_006VXNV.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000095", "node_attrs": {"div": 0.207639, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000096", "node_attrs": {"div": 0.208517, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C755A", "G2662T", "A3363C"], "Gc": ["A220S", "L453F"], "Gn": ["T235K"]}, "labels": {"aa": "Gc: A220S, L453F; Gn: T235K"}}, "children": [{"name": "PP_006VXWD|ANDV/Oligoryzomys longicaudatus/CHL/9717869_05/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.20881, "strain": {"value": "PP_006VXWD|ANDV/Oligoryzomys longicaudatus/CHL/9717869_05/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXWD", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK513885.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513885.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VXWD.1", "url": "https://pathoplexus.org/seq/PP_006VXWD.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["G3340T"], "Gc": ["G446C"]}, "labels": {"aa": "Gc: G446C"}}}, {"name": "NODE_0000097", "node_attrs": {"div": 0.208518, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VXXB|ANDV/Oligoryzomys longicaudatus/CHL/9717869_04/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208519, "strain": {"value": "PP_006VXXB|ANDV/Oligoryzomys longicaudatus/CHL/9717869_04/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXXB", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK513886.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513886.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VXXB.1", "url": "https://pathoplexus.org/seq/PP_006VXXB.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VXUH|ANDV/Oligoryzomys longicaudatus/CHL/9717869_06/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208519, "strain": {"value": "PP_006VXUH|ANDV/Oligoryzomys longicaudatus/CHL/9717869_06/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXUH", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK059789.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059789.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXUH.1", "url": "https://pathoplexus.org/seq/PP_006VXUH.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000098", "node_attrs": {"div": 0.208224, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C2675T", "G3151A"], "Gc": ["P224L", "V383I"]}, "labels": {"aa": "Gc: P224L, V383I"}}, "children": [{"name": "PP_006VY3Z|ANDV/Oligoryzomys longicaudatus/CHL/9717869_39/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.20881, "strain": {"value": "PP_006VY3Z|ANDV/Oligoryzomys longicaudatus/CHL/9717869_39/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY3Z", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK513892.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513892.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY3Z.1", "url": "https://pathoplexus.org/seq/PP_006VY3Z.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["A1697G", "C3338T"], "Gc": ["S445L"], "Gn": ["D549G"]}, "labels": {"aa": "Gc: S445L; Gn: D549G"}}}, {"name": "NODE_0000099", "node_attrs": {"div": 0.208225, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000100", "node_attrs": {"div": 0.208518, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C2663A"], "Gc": ["A220E"]}, "labels": {"aa": "Gc: A220E"}}, "children": [{"name": "PP_006VY4X|ANDV/Oligoryzomys longicaudatus/CHL/9717869_41/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208811, "strain": {"value": "PP_006VY4X|ANDV/Oligoryzomys longicaudatus/CHL/9717869_41/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY4X", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK513893.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513893.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY4X.1", "url": "https://pathoplexus.org/seq/PP_006VY4X.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["T246C"]}}}, {"name": "NODE_0000101", "node_attrs": {"div": 0.208519, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYBH|ANDV/Oligoryzomys longicaudatus/CHL/9717869_42/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.20852, "strain": {"value": "PP_006VYBH|ANDV/Oligoryzomys longicaudatus/CHL/9717869_42/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYBH", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK513900.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513900.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VYBH.1", "url": "https://pathoplexus.org/seq/PP_006VYBH.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VY13|ANDV/Oligoryzomys longicaudatus/CHL/9717869_40/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.20852, "strain": {"value": "PP_006VY13|ANDV/Oligoryzomys longicaudatus/CHL/9717869_40/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY13", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK513890.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513890.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY13.1", "url": "https://pathoplexus.org/seq/PP_006VY13.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000102", "node_attrs": {"div": 0.208226, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VXQR|ANDV/Oligoryzomys longicaudatus/CHL/9717869_13/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208227, "strain": {"value": "PP_006VXQR|ANDV/Oligoryzomys longicaudatus/CHL/9717869_13/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXQR", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK059785.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059785.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXQR.1", "url": "https://pathoplexus.org/seq/PP_006VXQR.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000103", "node_attrs": {"div": 0.208227, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VXY9|ANDV/Oligoryzomys longicaudatus/CHL/9717869_15/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208227, "strain": {"value": "PP_006VXY9|ANDV/Oligoryzomys longicaudatus/CHL/9717869_15/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXY9", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK513887.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513887.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VXY9.1", "url": "https://pathoplexus.org/seq/PP_006VXY9.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VXMX|ANDV/Oligoryzomys longicaudatus/CHL/9717869_14/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208227, "strain": {"value": "PP_006VXMX|ANDV/Oligoryzomys longicaudatus/CHL/9717869_14/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXMX", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK059782.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059782.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXMX.1", "url": "https://pathoplexus.org/seq/PP_006VXMX.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3418}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000104", "node_attrs": {"div": 0.206758, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000105", "node_attrs": {"div": 0.206759, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VVUK|PP_006VVUK|nan/XXXX-XX-XX", "node_attrs": {"div": 0.20676, "strain": {"value": "PP_006VVUK|PP_006VVUK|nan/XXXX-XX-XX"}, "accession": "PP_006VVUK", "author": {"author": "Nguyen, S. H.; Pichuantes, S.", "value": "Nguyen, S. H.; Pichuantes, S."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "HV984408.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/HV984408.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2013-02-13"}, "PPX_accession": {"value": "PP_006VVUK.1", "url": "https://pathoplexus.org/seq/PP_006VVUK.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Nguyen et al."}, "length": {"value": 3671}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000106", "node_attrs": {"div": 0.20676, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VNZG|Chile-9717869|nan/XXXX-XX-XX", "node_attrs": {"div": 0.20676, "strain": {"value": "PP_006VNZG|Chile-9717869|nan/XXXX-XX-XX"}, "accession": "PP_006VNZG", "author": {"author": "Bohlman, M. C.; Borucki, M. K.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; Rowe, J. E.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B.", "value": "Bohlman, M. C.; Borucki, M. K.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; Rowe, J. E.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "AF291703.2", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF291703.2"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2000-10-10"}, "PPX_accession": {"value": "PP_006VNZG.1", "url": "https://pathoplexus.org/seq/PP_006VNZG.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Bohlman et al."}, "length": {"value": 3671}, "institution": {"value": "University of Nevada-Reno, Microbiology"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000107", "node_attrs": {"div": 0.20676, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0D9|Chile-9717869|Chile/1997-XX-XX", "node_attrs": {"div": 0.20676, "strain": {"value": "PP_006W0D9|Chile-9717869|Chile/1997-XX-XX"}, "accession": "PP_006W0D9", "author": {"author": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D.", "value": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D."}, "host": {"value": "mice and others"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MT956623.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MT956623.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "date_released": {"value": "2021-02-27"}, "PPX_accession": {"value": "PP_006W0D9.1", "url": "https://pathoplexus.org/seq/PP_006W0D9.1"}, "date": {"value": "1997-XX-XX"}, "abbr_authors": {"value": "Warner et al."}, "length": {"value": 3671}, "country": {"value": "Chile"}, "institution": {"value": "Public Health Agency of Canada, Special Pathogens"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["C3645A", "C3662T", "A3671T"]}}}, {"name": "NODE_0000108", "node_attrs": {"div": 0.20676, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0E7|Chile-9717869|nan/XXXX-XX-XX", "node_attrs": {"div": 0.20676, "strain": {"value": "PP_006W0E7|Chile-9717869|nan/XXXX-XX-XX"}, "accession": "PP_006W0E7", "author": {"author": "Bohlman, M. C.; Borucki, M.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; St Jeor, S.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B.", "value": "Bohlman, M. C.; Borucki, M.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; St Jeor, S.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "NC_003467.2", "url": "https://www.ncbi.nlm.nih.gov/nuccore/NC_003467.2"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2000-10-10"}, "PPX_accession": {"value": "PP_006W0E7.1", "url": "https://pathoplexus.org/seq/PP_006W0E7.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Bohlman et al."}, "length": {"value": 3671}, "institution": {"value": "National Center for Biotechnology Information, NIH"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000109", "node_attrs": {"div": 0.20676, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VQYG|PP_006VQYG|nan/XXXX-XX-XX", "node_attrs": {"div": 0.20676, "strain": {"value": "PP_006VQYG|PP_006VQYG|nan/XXXX-XX-XX"}, "accession": "PP_006VQYG", "author": {"author": "Nguyen, S. H.; Pichuantes, S.", "value": "Nguyen, S. H.; Pichuantes, S."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "DI161196.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/DI161196.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2008-02-21"}, "PPX_accession": {"value": "PP_006VQYG.1", "url": "https://pathoplexus.org/seq/PP_006VQYG.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Nguyen et al."}, "length": {"value": 3671}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VQN2|PP_006VQN2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.20676, "strain": {"value": "PP_006VQN2|PP_006VQN2|nan/XXXX-XX-XX"}, "accession": "PP_006VQN2", "author": {"author": "Pichuantesu, S.; Nguyen, S. H.", "value": "Pichuantesu, S.; Nguyen, S. H."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "DL139691.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/DL139691.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2008-09-26"}, "PPX_accession": {"value": "PP_006VQN2.1", "url": "https://pathoplexus.org/seq/PP_006VQN2.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Pichuantesu et al."}, "length": {"value": 3671}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}, {"name": "NODE_0000110", "node_attrs": {"div": 0.206759, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000111", "node_attrs": {"div": 0.20676, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYEB|ANDV/Oligoryzomys longicaudatus/CHL/9717869_01/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.206761, "strain": {"value": "PP_006VYEB|ANDV/Oligoryzomys longicaudatus/CHL/9717869_01/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYEB", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095801.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095801.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYEB.1", "url": "https://pathoplexus.org/seq/PP_006VYEB.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000112", "node_attrs": {"div": 0.206761, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000113", "node_attrs": {"div": 0.207054, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C2543A"], "Gc": ["S180Y"]}, "labels": {"aa": "Gc: S180Y"}}, "children": [{"name": "PP_006VYK0|ANDV/Oligoryzomys longicaudatus/CHL/9717869_06/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.20764, "strain": {"value": "PP_006VYK0|ANDV/Oligoryzomys longicaudatus/CHL/9717869_06/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYK0", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095806.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095806.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYK0.1", "url": "https://pathoplexus.org/seq/PP_006VYK0.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["C1097A", "A1834G"], "Gn": ["S349Y", "K595E"]}, "labels": {"aa": "Gn: S349Y, K595E"}}}, {"name": "NODE_0000114", "node_attrs": {"div": 0.207347, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A828G"]}}, "children": [{"name": "PP_006VYTJ|ANDV/Oligoryzomys longicaudatus/CHL/9717869_04/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207348, "strain": {"value": "PP_006VYTJ|ANDV/Oligoryzomys longicaudatus/CHL/9717869_04/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYTJ", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095814.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095814.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYTJ.1", "url": "https://pathoplexus.org/seq/PP_006VYTJ.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3418}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VYXA|ANDV/Oligoryzomys longicaudatus/CHL/9717869_05/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207348, "strain": {"value": "PP_006VYXA|ANDV/Oligoryzomys longicaudatus/CHL/9717869_05/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYXA", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095818.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095818.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYXA.1", "url": "https://pathoplexus.org/seq/PP_006VYXA.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000115", "node_attrs": {"div": 0.206762, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000116", "node_attrs": {"div": 0.207348, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C2539T", "A3265G"], "Gc": ["P179S", "N421D"]}, "labels": {"aa": "Gc: P179S, N421D"}}, "children": [{"name": "PP_006VYY8|ANDV/Oligoryzomys longicaudatus/CHL/9717869_08/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207641, "strain": {"value": "PP_006VYY8|ANDV/Oligoryzomys longicaudatus/CHL/9717869_08/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYY8", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095819.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095819.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYY8.1", "url": "https://pathoplexus.org/seq/PP_006VYY8.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["G69A"]}}}, {"name": "NODE_0000117", "node_attrs": {"div": 0.207349, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYPS|ANDV/Oligoryzomys longicaudatus/CHL/9717869_07/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.20735, "strain": {"value": "PP_006VYPS|ANDV/Oligoryzomys longicaudatus/CHL/9717869_07/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYPS", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095810.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095810.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYPS.1", "url": "https://pathoplexus.org/seq/PP_006VYPS.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VYJ2|ANDV/Oligoryzomys longicaudatus/CHL/9717869_09/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.20735, "strain": {"value": "PP_006VYJ2|ANDV/Oligoryzomys longicaudatus/CHL/9717869_09/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYJ2", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095805.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095805.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYJ2.1", "url": "https://pathoplexus.org/seq/PP_006VYJ2.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000118", "node_attrs": {"div": 0.207055, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A413G"], "Gn": ["D121G"]}, "labels": {"aa": "Gn: D121G"}}, "children": [{"name": "PP_006VXSM|ANDV/Oligoryzomys longicaudatus/CHL/9717869_09/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207641, "strain": {"value": "PP_006VXSM|ANDV/Oligoryzomys longicaudatus/CHL/9717869_09/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXSM", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK059787.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059787.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXSM.1", "url": "https://pathoplexus.org/seq/PP_006VXSM.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["T1603C", "A3445T"], "Gc": ["R481*"], "Gn": ["S518P"]}, "labels": {"aa": "Gc: R481*; Gn: S518P"}}}, {"name": "NODE_0000119", "node_attrs": {"div": 0.207056, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VY21|ANDV/Oligoryzomys longicaudatus/CHL/9717869_07/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207057, "strain": {"value": "PP_006VY21|ANDV/Oligoryzomys longicaudatus/CHL/9717869_07/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY21", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK513891.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513891.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY21.1", "url": "https://pathoplexus.org/seq/PP_006VY21.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VXVF|ANDV/Oligoryzomys longicaudatus/CHL/9717869_08/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207349, "strain": {"value": "PP_006VXVF|ANDV/Oligoryzomys longicaudatus/CHL/9717869_08/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXVF", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK059790.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059790.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXVF.1", "url": "https://pathoplexus.org/seq/PP_006VXVF.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["T1752G"], "Gn": ["S567R"]}, "labels": {"aa": "Gn: S567R"}}}]}]}]}]}]}, {"name": "NODE_0000120", "node_attrs": {"div": 0.20676, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000121", "node_attrs": {"div": 0.206761, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ04|ANDV/Oligoryzomys longicaudatus/CHL/9717869_03/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207054, "strain": {"value": "PP_006VZ04|ANDV/Oligoryzomys longicaudatus/CHL/9717869_03/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VZ04", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095821.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095821.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VZ04.1", "url": "https://pathoplexus.org/seq/PP_006VZ04.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["G1223T"], "Gn": ["S391I"]}, "labels": {"aa": "Gn: S391I"}}}, {"name": "NODE_0000122", "node_attrs": {"div": 0.207054, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A725G"], "Gn": ["K225R"]}, "labels": {"aa": "Gn: K225R"}}, "children": [{"name": "PP_006VYG7|ANDV/Oligoryzomys longicaudatus/CHL/9717869_13/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207347, "strain": {"value": "PP_006VYG7|ANDV/Oligoryzomys longicaudatus/CHL/9717869_13/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYG7", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095803.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095803.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYG7.1", "url": "https://pathoplexus.org/seq/PP_006VYG7.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3418}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["G1165A"], "Gn": ["E372K"]}, "labels": {"aa": "Gn: E372K"}}}, {"name": "NODE_0000123", "node_attrs": {"div": 0.207055, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYDD|ANDV/Oligoryzomys longicaudatus/CHL/9717869_15/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207348, "strain": {"value": "PP_006VYDD|ANDV/Oligoryzomys longicaudatus/CHL/9717869_15/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYDD", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095800.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095800.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYDD.1", "url": "https://pathoplexus.org/seq/PP_006VYDD.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3418}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["A1748G"], "Gn": ["Q566R"]}, "labels": {"aa": "Gn: Q566R"}}}, {"name": "PP_006VYCF|ANDV/Oligoryzomys longicaudatus/CHL/9717869_14/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207934, "strain": {"value": "PP_006VYCF|ANDV/Oligoryzomys longicaudatus/CHL/9717869_14/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYCF", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095799.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095799.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYCF.1", "url": "https://pathoplexus.org/seq/PP_006VYCF.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["A1657G", "A2016G", "A3303G"], "Gn": ["K536E"]}, "labels": {"aa": "Gn: K536E"}}}]}]}]}, {"name": "NODE_0000124", "node_attrs": {"div": 0.206761, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000125", "node_attrs": {"div": 0.207347, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C375A", "T1666G"], "Gn": ["N108K", "Y539D"]}, "labels": {"aa": "Gn: N108K, Y539D"}}, "children": [{"name": "PP_006VXZ7|ANDV/Oligoryzomys longicaudatus/CHL/9717869_02/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207348, "strain": {"value": "PP_006VXZ7|ANDV/Oligoryzomys longicaudatus/CHL/9717869_02/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXZ7", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK513888.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513888.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VXZ7.1", "url": "https://pathoplexus.org/seq/PP_006VXZ7.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000126", "node_attrs": {"div": 0.207348, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VY8P|ANDV/Oligoryzomys longicaudatus/CHL/9717869_03/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207348, "strain": {"value": "PP_006VY8P|ANDV/Oligoryzomys longicaudatus/CHL/9717869_03/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY8P", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK513897.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513897.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY8P.1", "url": "https://pathoplexus.org/seq/PP_006VY8P.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VXTK|ANDV/Oligoryzomys longicaudatus/CHL/9717869_01/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207348, "strain": {"value": "PP_006VXTK|ANDV/Oligoryzomys longicaudatus/CHL/9717869_01/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXTK", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK059788.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059788.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXTK.1", "url": "https://pathoplexus.org/seq/PP_006VXTK.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3418}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000127", "node_attrs": {"div": 0.206762, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000128", "node_attrs": {"div": 0.207055, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T1646C"], "Gn": ["L532P"]}, "labels": {"aa": "Gn: L532P"}}, "children": [{"name": "PP_006VY05|ANDV/Oligoryzomys longicaudatus/CHL/9717869_18/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207056, "strain": {"value": "PP_006VY05|ANDV/Oligoryzomys longicaudatus/CHL/9717869_18/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY05", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK513889.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513889.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY05.1", "url": "https://pathoplexus.org/seq/PP_006VY05.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000129", "node_attrs": {"div": 0.207056, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VY6T|ANDV/Oligoryzomys longicaudatus/CHL/9717869_17/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207056, "strain": {"value": "PP_006VY6T|ANDV/Oligoryzomys longicaudatus/CHL/9717869_17/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY6T", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK513895.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513895.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY6T.1", "url": "https://pathoplexus.org/seq/PP_006VY6T.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000130", "node_attrs": {"div": 0.207056, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYAK|ANDV/Oligoryzomys longicaudatus/CHL/9717869_38/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207056, "strain": {"value": "PP_006VYAK|ANDV/Oligoryzomys longicaudatus/CHL/9717869_38/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYAK", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK513899.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513899.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VYAK.1", "url": "https://pathoplexus.org/seq/PP_006VYAK.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000131", "node_attrs": {"div": 0.207056, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VY7R|ANDV/Oligoryzomys longicaudatus/CHL/9717869_37/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207056, "strain": {"value": "PP_006VY7R|ANDV/Oligoryzomys longicaudatus/CHL/9717869_37/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY7R", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK513896.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513896.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY7R.1", "url": "https://pathoplexus.org/seq/PP_006VY7R.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VXPT|ANDV/Oligoryzomys longicaudatus/CHL/9717869_16/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207056, "strain": {"value": "PP_006VXPT|ANDV/Oligoryzomys longicaudatus/CHL/9717869_16/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXPT", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MK059784.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059784.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXPT.1", "url": "https://pathoplexus.org/seq/PP_006VXPT.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000132", "node_attrs": {"div": 0.207348, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A2866G", "G3437T"], "Gc": ["N288D", "C478F"]}, "labels": {"aa": "Gc: N288D, C478F"}}, "children": [{"name": "NODE_0000133", "node_attrs": {"div": 0.207641, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A738G"]}}, "children": [{"name": "PP_006VYZ6|ANDV/Oligoryzomys longicaudatus/CHL/9717869_19/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207642, "strain": {"value": "PP_006VYZ6|ANDV/Oligoryzomys longicaudatus/CHL/9717869_19/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYZ6", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095820.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095820.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYZ6.1", "url": "https://pathoplexus.org/seq/PP_006VYZ6.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZ12|ANDV/Oligoryzomys longicaudatus/CHL/9717869_21/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208226, "strain": {"value": "PP_006VZ12|ANDV/Oligoryzomys longicaudatus/CHL/9717869_21/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VZ12", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095822.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095822.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VZ12.1", "url": "https://pathoplexus.org/seq/PP_006VZ12.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["A2446G", "T2452A"], "Gc": ["I148V", "S150T"]}, "labels": {"aa": "Gc: I148V, S150T"}}}]}, {"name": "NODE_0000134", "node_attrs": {"div": 0.207349, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYNU|ANDV/Oligoryzomys longicaudatus/CHL/9717869_20/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207642, "strain": {"value": "PP_006VYNU|ANDV/Oligoryzomys longicaudatus/CHL/9717869_20/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYNU", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095809.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095809.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYNU.1", "url": "https://pathoplexus.org/seq/PP_006VYNU.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["G2708A"], "Gc": ["R235K"]}, "labels": {"aa": "Gc: R235K"}}}, {"name": "NODE_0000135", "node_attrs": {"div": 0.207642, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A2698C"], "Gc": ["S232R"]}, "labels": {"aa": "Gc: S232R"}}, "children": [{"name": "PP_006VYWC|ANDV/Oligoryzomys longicaudatus/CHL/9717869_16/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207643, "strain": {"value": "PP_006VYWC|ANDV/Oligoryzomys longicaudatus/CHL/9717869_16/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYWC", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095817.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095817.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYWC.1", "url": "https://pathoplexus.org/seq/PP_006VYWC.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000136", "node_attrs": {"div": 0.207643, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYUG|ANDV/Oligoryzomys longicaudatus/CHL/9717869_18/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207936, "strain": {"value": "PP_006VYUG|ANDV/Oligoryzomys longicaudatus/CHL/9717869_18/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYUG", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095815.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095815.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYUG.1", "url": "https://pathoplexus.org/seq/PP_006VYUG.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["G439A"], "Gn": ["V130I"]}, "labels": {"aa": "Gn: V130I"}}}, {"name": "PP_006VYF9|ANDV/Oligoryzomys longicaudatus/CHL/9717869_17/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207936, "strain": {"value": "PP_006VYF9|ANDV/Oligoryzomys longicaudatus/CHL/9717869_17/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYF9", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "INSDC_accession": {"value": "MN095802.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095802.1"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYF9.1", "url": "https://pathoplexus.org/seq/PP_006VYF9.1"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tan et al."}, "length": {"value": 3417}, "institution": {"value": "J. Craig Venter Institute"}, "totalAmbiguousNucs": {"value": 0}}, "branch_attrs": {"mutations": {"nuc": ["G1207A"], "Gn": ["A386T"]}, "labels": {"aa": "Gn: A386T"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, "root_sequence": {"Gc": "ETPLMESGWSDTAHGVGEIPMKTDLELDFSLPSSSSYSYRRKLTNPANKEESIPFHFQMEKQVIHAEIQPLGHWMDATFNIKTAFHCYGACQKYSYPWQTSKCFFEKDYQYETGWGCNPGDCPGVGTGCTACGVYLDKLKSVGKAYKIISLKYTRKVCIQLGTEQTCKHIDANDCLVTPSVKVCIVGTVSKLQPSDTLLFLGPLEQGGIILKQWCTTSCAFGDPGDIMSTPSGMRCPEHTGSFRKICGFATTPVCEYQGNTISGYKRMMATKDSFQSFNLTEPHITTNKLEWIDPDGNTRDHVNLVLNRDVSFQDLSDNPCKVDLHTQAIEGAWGSGVGFTLTCTVGLTECPSFMTSIKACDLAMCYGSTVTNLARGSNTVKVVGKGGHSGSSFKCCHDTDCSSEGLLASAPHLERVTGFNQIDSDKVYDDGAPPCTFKCWFTKSGEWLLGILNGNWIVVVVLVVILILSIIMFSVLCPRRGHKKTV*", "Gn": "MEGWYLVVLGVCYTLTLAMPKTIYELKMECPHTVGLGQGYIIGSTELGLISIEAASDIKLESSCNFDLHTTSMAQKSFTQVEWRKKSDTTDTTNAASTTFEAQTKTVNLRGTCILAPELYDTLKKVKKTVLCYDLTCNQTHCQPTVYLIAPVLTCMSIRSCMASVFTSRIQVIYEKTHCVTGQLIEGQCFNPAHTLTLSQPAHTYDTVTLPISCFFTPKKSEQLKVIKTFEGILTKTGCTENALQGYYVCFLGSHSEPLIVPSLEDIRSAEVVSRMLVHPRGEDHDAIQNSQSHLRIVGPITAKVPSTSSTDTLKGTAFAGVPMYSSLSTLVRNADPEFVFSPGIVPESNHSTCDKKTVPITWTGYLPISGEMEKVTGCTVFCTLAGPGASCEAYSENGIFNISSPTCLVNKVQRFRGSEQKINFICQRVDQDVVVYCNGQKKVILTKTLVIGQCIYTFTSLFSLMPDVAHSLAVELCVPGLHGWATVMLLSTFCFGWVLIPAVTLIILKCLRVLTFSCSHYTNESKFKFILEKVKIEYQKTMGSMVCDVCHHECETAKELESHRQSCINGQCPYCMTITEATESALQAHYSICKLTGRFQEALKKSLKKPEVKKGCYRTLGVFRYKSRCYVGLVWCLLLTCEIVIWAASA", "nuc": "TAGTAGTAGACTCCGCAAGAAGAAGCAAAAAATTAAAGAAGTGAGTTTAAAATGGAAGGGTGGTATCTGGTTGTTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCCAAGACCATTTATGAGCTTAAAATGGAATGCCCGCACACTGTGGGTCTCGGTCAAGGTTACATCATTGGCTCAACAGAACTAGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTCGAGAGCTCTTGCAATTTTGATCTTCATACAACATCTATGGCCCAGAAGAGTTTCACCCAAGTTGAATGGAGAAAGAAAAGTGACACAACTGATACCACAAATGCTGCGTCCACTACCTTTGAAGCACAAACTAAAACTGTTAACCTTAGAGGGACTTGTATACTGGCACCTGAACTCTATGATACATTGAAGAAAGTAAAAAAGACAGTCCTGTGCTATGATCTAACATGTAATCAAACACATTGTCAGCCAACTGTCTATCTGATTGCACCTGTATTGACATGCATGTCAATAAGAAGTTGTATGGCTAGTGTGTTTACAAGCAGGATTCAGGTGATTTATGAAAAGACACATTGTGTAACAGGTCAGCTGATTGAGGGTCAGTGTTTCAACCCAGCACACACATTGACATTATCTCAGCCTGCTCACACTTATGATACTGTCACCCTTCCTATCTCTTGTTTTTTCACACCAAAGAAGTCGGAGCAACTAAAAGTTATAAAAACATTTGAAGGAATTCTGACGAAGACAGGTTGCACGGAGAATGCATTGCAGGGTTATTATGTGTGTTTTTTAGGGAGTCATTCAGAACCTTTAATTGTTCCGAGTTTGGAGGACATACGGTCTGCTGAAGTTGTTAGTAGGATGCTTGTACACCCTAGGGGAGAAGACCATGATGCCATACAGAATTCACAAAGTCACTTAAGAATAGTGGGACCTATCACAGCAAAAGTGCCATCAACTAGTTCCACAGATACCCTAAAGGGGACAGCCTTTGCAGGCGTCCCAATGTATAGCTCTTTATCTACACTAGTCAGAAATGCAGACCCAGAATTTGTATTTTCTCCAGGTATAGTACCTGAATCTAATCACAGTACATGTGATAAGAAGACAGTACCTATCACATGGACAGGCTACCTACCAATATCAGGTGAGATGGAAAAAGTGACTGGATGTACAGTTTTTTGTACACTAGCAGGACCTGGTGCTAGTTGTGAGGCCTATTCTGAAAATGGTATATTTAACATCAGTTCTCCAACATGTCTTGTAAACAAAGTCCAAAGATTTCGTGGATCTGAACAGAAAATAAATTTTATCTGTCAGCGGGTAGATCAGGATGTTGTTGTATACTGCAATGGGCAAAAGAAAGTCATATTAACCAAAACTTTGGTTATTGGGCAGTGTATTTATACATTCACAAGCCTATTTTCATTGATGCCTGATGTAGCCCACTCATTGGCTGTAGAATTATGTGTCCCGGGATTACATGGATGGGCCACTGTCATGCTTCTATCAACATTCTGCTTTGGGTGGGTCTTGATTCCTGCGGTCACATTAATAATATTAAAGTGTCTAAGGGTTTTGACGTTTTCTTGTTCCCATTACACTAATGAGTCAAAATTTAAATTCATCCTGGAAAAAGTTAAAATTGAATACCAAAAGACTATGGGATCAATGGTGTGCGATGTATGTCATCATGAGTGTGAAACAGCAAAAGAACTTGAATCACATAGACAGAGTTGTATCAATGGACAATGTCCTTATTGCATGACAATAACTGAAGCAACTGAAAGTGCCTTGCAAGCCCATTATTCCATTTGTAAATTGACAGGAAGATTTCAGGAGGCACTGAAAAAGTCACTTAAAAAGCCAGAGGTAAAAAAAGGTTGTTACAGAACACTCGGGGTATTTAGATATAAAAGTAGATGTTATGTGGGTTTGGTATGGTGCCTATTGTTGACATGTGAAATTGTTATTTGGGCCGCAAGTGCAGAGACTCCACTAATGGAGTCAGGCTGGTCAGATACGGCTCATGGTGTTGGTGAGATTCCAATGAAGACAGACCTCGAGCTGGACTTTTCACTGCCTTCTTCATCCTCTTACAGTTATAGGAGAAAGCTCACAAACCCAGCCAATAAAGAAGAGTCTATTCCCTTCCACTTCCAGATGGAAAAACAAGTAATTCATGCTGAAATCCAACCCCTGGGTCATTGGATGGATGCGACATTTAATATTAAGACTGCATTTCATTGTTATGGTGCATGCCAGAAATACTCTTATCCATGGCAGACATCTAAGTGCTTCTTTGAAAAGGACTACCAGTATGAAACAGGCTGGGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGATGCACTGCTTGTGGTGTTTATCTCGATAAACTAAAATCTGTTGGGAAGGCCTATAAGATAATTTCTTTAAAATATACCAGAAAGGTTTGTATTCAGTTAGGAACAGAACAAACTTGCAAGCATATTGATGCAAATGATTGTTTAGTGACACCATCTGTGAAAGTTTGCATAGTGGGCACAGTTTCAAAACTTCAACCATCTGATACTCTTTTGTTCTTAGGTCCACTAGAACAAGGGGGAATCATTCTTAAGCAATGGTGCACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCCACTCCCAGTGGTATGAGGTGTCCAGAGCACACTGGATCATTTAGGAAAATTTGCGGTTTTGCTACTACACCAGTTTGTGAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATGGCAACAAAAGATTCATTCCAATCATTTAACTTAACAGAACCTCACATCACAACAAACAAGCTTGAATGGATCGACCCAGATGGGAATACAAGAGACCACGTAAACCTTGTCTTAAATAGAGATGTCTCATTTCAGGATTTAAGTGATAACCCCTGTAAAGTAGACCTACACACACAAGCAATAGAAGGGGCATGGGGTTCTGGTGTAGGGTTTACACTCACATGTACTGTCGGATTAACAGAGTGCCCAAGTTTTATGACATCAATTAAGGCATGTGACCTAGCTATGTGTTATGGATCAACAGTAACAAACCTTGCCAGGGGCTCTAATACAGTGAAAGTAGTTGGTAAAGGAGGCCATTCAGGGTCCTCATTTAAATGCTGTCATGATACAGATTGCTCCTCTGAAGGTTTACTTGCATCAGCCCCTCATCTTGAGAGGGTAACAGGATTCAATCAAATTGATTCAGATAAGGTTTATGATGATGGTGCACCACCTTGCACATTCAAATGCTGGTTCACTAAGTCAGGTGAGTGGCTTCTTGGGATCTTAAACGGGAATTGGATTGTTGTTGTAGTGCTTGTTGTGATACTCATTCTCTCTATCATAATGTTCAGTGTTTTGTGTCCCAGGAGAGGGCACAAGAAAACTGTCTAAGCATTGACCTCAACTCCTACATTAGATCATATACATTTATGCACTTCCTCATATTTAGCTGCACTAAGATATTAATAAACTCTAGTTATTGACTTTATAAGATTATTATGGAACTAACCTCACTTAAAAAAAACAAATACTTTACTCATATATAACTCCATATTCTCTTACCGAGGCTTTTGTTCCTGCGGAGCATACTACTA"}} \ No newline at end of file +{"version": "v2", "meta": {"title": "Andes Virus M Segment (ANDV)", "updated": "2026-05-12", "build_url": "https://github.com/nextstrain/andv", "data_provenance": [{"name": "Pathoplexus", "url": "https://pathoplexus.org/"}], "maintainers": [{"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}], "display_defaults": {"map_triplicate": false, "color_by": "outbreak", "distance_measure": "div"}, "genome_annotations": {"GPC": {"end": 3468, "seqid": "defaults/m/reference.gb", "start": 52, "strand": "+", "type": "CDS"}, "Gc": {"end": 3468, "seqid": "defaults/m/reference.gb", "start": 2005, "strand": "+", "type": "CDS"}, "Gn": {"end": 2004, "seqid": "defaults/m/reference.gb", "start": 52, "strand": "+", "type": "CDS"}, "nuc": {"end": 3671, "start": 1, "strand": "+", "type": "source"}}, "colorings": [{"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "date", "title": "Collection Date", "type": "categorical"}, {"key": "region", "title": "Region", "type": "categorical", "scale": [["Africa", "#CEB541"], ["Europe", "#E39B39"], ["South America", "#E56C2F"]]}, {"key": "country", "title": "Country", "type": "categorical"}, {"key": "division", "title": "Admin Division", "type": "categorical"}, {"key": "host", "title": "Host", "type": "categorical"}, {"key": "abbr_authors", "title": "Authors", "type": "categorical"}, {"key": "dataUseTerms", "title": "Data use terms", "type": "categorical"}, {"key": "restrictedUntil", "title": "Restricted Until", "type": "categorical"}, {"key": "date_released", "title": "Release Date", "type": "categorical"}, {"key": "length", "title": "Length", "type": "continuous"}, {"key": "INSDC_accession", "title": "INSDC Accession", "type": "categorical"}, {"key": "PPX_accession", "title": "Pathoplexus Accession", "type": "categorical"}, {"key": "institution", "title": "Author Affiliations", "type": "categorical"}, {"key": "totalAmbiguousNucs", "title": "Ambiguous Nucleotides", "type": "continuous"}, {"key": "outbreak", "title": "outbreak", "type": "categorical"}], "filters": ["country", "division", "host", "abbr_authors", "clade_membership"], "geo_resolutions": [{"key": "country", "demes": {"Brazil": {"latitude": -10.3333332, "longitude": -53.1999999}, "Argentina": {"latitude": -37.052315, "longitude": -64.869142}, "Chile": {"latitude": -31.7613364, "longitude": -71.3187696}, "Netherlands": {"latitude": 52.1326, "longitude": 5.2913}, "Switzerland": {"latitude": 46.8182, "longitude": 8.2275}, "South Africa": {"latitude": -28.8166235, "longitude": 24.991639}}}], "panels": ["tree", "entropy"], "extensions": {"nextclade": {"clade_node_attrs": [{"name": "outbreak", "displayName": "Outbreak", "description": "Annotation of recent outbreaks (to be refined)", "skipAsReference": false}]}}}, "tree": {"name": "NODE_0000000", "node_attrs": {"div": 0, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A32C", "T34G", "G38A", "G41A", "G45T", "T47G", "T48A", "A51G", "C67T", "G70A", "T75C", "C76T", "T78G", "A89C", "G93A", "G114A", "G126A", "T129C", "C147T", "T156A", "C159A", "C171T", "C174T", "A186T", "A192T", "T195C", "T202C", "G211A", "T219A", "A223T", "C231A", "G234A", "T240A", "T252C", "T255C", "G271A", "C273T", "G276A", "G279A", "T282C", "T284A", "C285T", "C288T", "A303G", "A309G", "C315A", "T324C", "C327A", "A330G", "G339A", "C342A", "T345A", "C348A", "G355T", "A360G", "A361G", "T363C", "T372A", "A379C", "T387C", "A391G", "C394T", "C400T", "T402C", "C408T", "A429T", "A438T", "C441A", "G444C", "C447T", "A456G", "A459C", "T462C", "T474C", "T486A", "A507G", "T508A", "G510A", "A528G", "T531C", "T540A", "G546C", "A552T", "A582C", "A591C", "T597G", "G600A", "G603A", "A604G", "T618C", "A627T", "A636T", "T637C", "G639A", "T643C", "A645T", "T648A", "T669C", "T672A", "C675A", "C678A", "T681A", "A685G", "T688A", "T690C", "C699T", "G708A", "G714T", "G717C", "A720G", "G727T", "A730G", "A735G", "A747G", "T750A", "C751A", "G753T", "G756T", "T765C", "C768T", "G771A", "G774A", "T781C", "G786A", "G798T", "A807T", "G810A", "T816C", "T826C", "A829C", "T830A", "G837A", "T841C", "G843A", "C849T", "A852C", "G855T", "T858A", "T861A", "A864G", "T870C", "G876A", "C880A", "C888T", "T891A", "G894A", "A897T", "A900G", "G910C", "C912A", "A915T", "G918A", "T921C", "A928G", "C931T", "A937C", "A939G", "T951A", "C954A", "T970A", "C971G", "A972T", "T978C", "C981T", "A984T", "A993C", "G996A", "A1002T", "A1011T", "C1014T", "C1017T", "T1026C", "T1038A", "C1047G", "A1050G", "G1054A", "A1071G", "T1077A", "T1083G", "A1086C", "G1087A", "T1092A", "T1101C", "A1108G", "C1109T", "A1125T", "G1126A", "A1128C", "A1132C", "C1146T", "C1149T", "C1150T", "A1152G", "A1155T", "A1158C", "T1164C", "G1179A", "T1182A", "T1188C", "T1197C", "A1203T", "C1204T", "A1206G", "A1212C", "T1218A", "T1221A", "A1242G", "A1251C", "C1260A", "T1266C", "A1281C", "C1290T", "A1293G", "G1295A", "C1300A", "T1302A", "A1305G", "A1311G", "G1314A", "A1317G", "A1320T", "T1332C", "C1336A", "G1338A", "A1341T", "G1347A", "T1353C", "C1365T", "A1374G", "A1380G", "C1383G", "A1386C", "A1389G", "A1395G", "G1401A", "G1410C", "G1413A", "T1416C", "T1419A", "A1425T", "T1440C", "A1458G", "C1464T", "G1470A", "A1476C", "A1479G", "C1488G", "G1491A", "A1494C", "C1509A", "A1530C", "C1536T", "G1542C", "G1546A", "T1549C", "G1551A", "T1554A", "T1557A", "G1560A", "G1561A", "C1563T", "A1570G", "A1572T", "A1573G", "A1575C", "T1576C", "G1581A", "G1583T", "T1584C", "C1585T", "G1589A", "T1593G", "T1595C", "G1596A", "G1599A", "T1608C", "C1611A", "C1617T", "C1641T", "C1644A", "A1650G", "A1660G", "A1665G", "A1671G", "T1677A", "G1692T", "C1695T", "G1699A", "A1701C", "T1704C", "T1707C", "T1734A", "G1745A", "G1749A", "T1752C", "T1755C", "C1758T", "T1770C", "A1785C", "A1788G", "A1794G", "T1800A", "G1812A", "C1818T", "C1827T", "T1830C", "A1845C", "G1857A", "A1860T", "G1863A", "A1866G", "G1869A", "T1875G", "A1878G", "G1881A", "G1887A", "A1892G", "A1906C", "A1908T", "C1912T", "C1914A", "G1917A", "T1929C", "A1932G", "A1938G", "T1941C", "G1947T", "T1950C", "A1956T", "C1962T", "C1963G", "A1965G", "G1971A", "A1981C", "G1984A", "A1987G", "T1989A", "C1995T", "A1998T", "G2007A", "A2016T", "A2017C", "C2028A", "G2040A", "T2043A", "T2055A", "G2058A", "A2059G", "G2070A", "C2076T", "C2077T", "C2079A", "G2085A", "C2088T", "G2097A", "T2118C", "G2124A", "A2136T", "C2139T", "A2142T", "A2151G", "G2157A", "T2160A", "T2163C", "C2175T", "A2187G", "T2196A", "T2202A", "C2208T", "C2212A", "C2214A", "C2215T", "T2220G", "G2235A", "C2286T", "G2301A", "A2304T", "T2305G", "T2307A", "C2313T", "G2325A", "C2328T", "C2331T", "C2346T", "T2355C", "T2364G", "C2367T", "A2373T", "G2376A", "G2382A", "T2385A", "A2388T", "T2397A", "T2406G", "T2409C", "C2412T", "G2433A", "C2439A", "A2448C", "T2451C", "A2460G", "T2463C", "A2469G", "T2475A", "T2478C", "G2484A", "A2496G", "T2502A", "G2535A", "A2538T", "T2553A", "A2559T", "G2562T", "C2565G", "A2568T", "A2574T", "A2583G", "T2592C", "T2605C", "T2610G", "C2614T", "G2625T", "A2628G", "C2631T", "T2637G", "C2649T", "A2652T", "A2658T", "C2673T", "C2691A", "T2694A", "C2695A", "C2697T", "G2709A", "A2715T", "G2718A", "C2721T", "A2730C", "T2733C", "A2734C", "C2745T", "T2748C", "T2754A", "A2763T", "T2766A", "A2772G", "A2781G", "T2790C", "A2814C", "A2820G", "C2841T", "A2847T", "T2853A", "C2856T", "C2868T", "C2883T", "A2889T", "G2895T", "A2902C", "A2904T", "C2907T", "C2910T", "C2916T", "C2922A", "A2925G", "C2937T", "T2950C", "A2973T", "C2977T", "A2979G", "C2982T", "T3012A", "A3018T", "C3030T", "A3033C", "C3042T", "A3045T", "A3060G", "T3066C", "G3069T", "G3081A", "A3093T", "T3096A", "A3117T", "A3118G", "A3120T", "C3124T", "T3126C", "C3129T", "C3135T", "T3138C", "A3150G", "A3165T", "C3168G", "G3177T", "C3180T", "A3204T", "C3210T", "C3213T", "A3219G", "T3223C", "A3225T", "C3226G", "T3240A", "G3252A", "A3255T", "A3258T", "T3267C", "A3270G", "A3279C", "T3282C", "T3288C", "A3303T", "A3306T", "C3312T", "C3318T", "A3321G", "A3339T", "T3342A", "C3360T", "C3366T", "G3369T", "T3372C", "A3387T", "T3396G", "C3405G", "T3408C", "C3409T", "C3411T", "C3417A", "A3421C", "G3423C", "C3426T", "G3430A", "T3433C", "G3435C", "T3438C", "C3441A", "A3442C", "G3450A", "C3465T", "C3470T", "G3474-", "T3478-", "C3479-", "A3480-", "C3482-", "T3483-", "C3484-", "C3485-", "T3486-", "C3488-", "G3493-", "A3494-", "T3495-", "C3496-", "A3497-", "T3506C", "C3515A", "C3516T", "G3536-", "A3537-", "A3545G", "A3546C", "G3553T", "G3559A", "T3563A", "G3569C", "A3570T", "T3575-", "T3577C", "G3578-", "A3580-", "T3583-", "A3584-", "C3589T", "A3590T", "C3591A", "T3617C", "T3621A", "C3645A"], "GPC": ["Y13S", "A54T", "I58L", "A74T", "F78Y", "I114V", "L153I", "I185V", "D206E", "I212V", "S213T", "E222D", "V226L", "L234I", "T235S", "I260H", "L277I", "A287P", "S293G", "H294Y", "T311A", "K315Q", "N334S", "A335T", "V346I", "T353I", "V359I", "I361L", "R415K", "V499I", "V504I", "I507V", "I508V", "C511F", "R513K", "L515A", "I537V", "V550I", "R565K", "I579M", "L638V", "I644L", "V645I", "M656L", "I670V", "P721T", "S752A", "P882T", "E933D", "M1006I", "T1023S", "L1059V", "L1120F", "M1124L", "V1127I"], "Gc": ["M5L", "I19V", "P70T", "S101A", "P231T", "M355I", "T372A", "L408V", "L469F", "M473L", "V476I"], "Gn": ["V7I", "Y13S", "S51T", "I58L", "A74T", "D88E", "A102S", "I114V", "P117S", "L153I", "I212V", "S213T", "E222D", "V226L", "L234I", "L277I", "A287P", "S293G", "H294Y", "T311A", "V346I", "T353V", "V359I", "I361L", "R415K", "V499I", "V504I", "I507V", "I508V", "C511I", "R513K", "V514M", "L515A", "I537V", "V550I", "R565K", "I579M", "K614R", "L638I", "I644L", "V645I", "I646V"]}, "labels": {"aa": "GPC: Y13S, A54T, I58L, A74T, F78Y, I114V, L153I, I185V, D206E, I212V, S213T, E222D, V226L, L234I, T235S, I260H, L277I, A287P, S293G, H294Y, T311A, K315Q, N334S, A335T, V346I, T353I, V359I, I361L, R415K, V499I, V504I, I507V, I508V, C511F, R513K, L515A, I537V, V550I, R565K, I579M, L638V, I644L, V645I, M656L, I670V, P721T, S752A, P882T, E933D, M1006I, T1023S, L1059V, L1120F, M1124L, V1127I; Gc: M5L, I19V, P70T, S101A, P231T, M355I, T372A, L408V, L469F, M473L, V476I; Gn: V7I, Y13S, S51T, I58L, A74T, D88E, A102S, I114V, P117S, L153I, I212V, S213T, E222D, V226L, L234I, L277I, A287P, S293G, H294Y, T311A, V346I, T353V, V359I, I361L, R415K, V499I, V504I, I507V, I508V, C511I, R513K, V514M, L515A, I537V, V550I, R565K, I579M, K614R, L638I, I644L, V645I, I646V"}}, "children": [{"name": "NODE_0000001", "node_attrs": {"div": 0.0147532, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G43T", "C94T", "T177A", "A189G", "C195G", "C201T", "T267A", "T288A", "A381T", "C402A", "T477C", "G615A", "C669G", "T729G", "G759A", "T805C", "G846A", "T1194C", "C1233T", "T1236C", "G1305T", "T1308A", "C1353T", "A1359T", "C1392A", "A1437G", "T1594G", "C1861T", "A1896G", "T1966C", "C2145A", "G2280A", "T2481C", "T2485C", "T2526C", "A2535G", "A2586T", "C2596T", "T2598G", "C2685A", "A2844G", "A2970G", "G3021A", "C3090T", "C3126A", "C3279T", "T3432C", "A3487-", "A3492-", "C3512T", "A3585-"], "GPC": ["V7I", "S51P", "P117S", "I646V"], "Gn": ["T51P", "F78Y", "D206E", "I260H", "I511F", "I638V"]}, "labels": {"aa": "GPC: V7I, S51P, P117S, I646V; Gn: T51P, F78Y, D206E, I260H, I511F, I638V"}}, "children": [{"name": "NODE_0000002", "node_attrs": {"div": 0.0374006, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A159T", "A291G", "C489T", "C551A", "G567A", "G609A", "C660T", "A681C", "C687T", "A963G", "T972C", "A994C", "G1167A", "T1275C", "C1284T", "T1320C", "A1347G", "G1371T", "T1398C", "C1410G", "T1425C", "G1458T", "A1467C", "T1473A", "A1581G", "G1590A", "T1605A", "A1629T", "T1692C", "A1719G", "T1810C", "G1866A", "G1878A", "G1953A", "T2103A", "A2325G", "A2382T", "C2463T", "C2466T", "G2469A", "G2472A", "A2499G", "G2628A", "T2631A", "G2637A", "C2730T", "T2868C", "C2902A", "T2904G", "A2988G", "T3069G", "G3147T", "A3153T", "C3192T", "G3219A", "G3336A", "A3342G"], "GPC": ["D88E", "A102S", "T167N", "A311S", "I353V", "S1023A"], "Gn": ["T167N", "A311S", "K315Q"]}, "labels": {"aa": "GPC: D88E, A102S, T167N, A311S, I353V, S1023A; Gn: T167N, A311S, K315Q"}}, "children": [{"name": "PP_006W0VA|VARS/22-01|Brazil/2022-12-09", "node_attrs": {"div": 0.148165, "strain": {"value": "PP_006W0VA|VARS/22-01|Brazil/2022-12-09"}, "accession": "PP_006W0VA", "author": {"author": "Amgarten, D.; Dorlass, E.; dos Santos Soares, A. C.; Moreira Salles, A. P.; Takara, A.; da Silva Santos, A.; Oliveira Sartori, B. S.; Petroni, R. C.; Sallum Filho, C. F. C.; Hidal, J. T.; Camargo, L. F. A.; Doi, A.; Rebello Pinho, J. R.", "value": "Amgarten, D.; Dorlass, E.; dos Santos Soares, A. C.; Moreira Salles, A. P.; Takara, A.; da Silva Santos, A.; Oliveira Sartori, B. S.; Petroni, R. C.; Sallum Filho, C. F. C.; Hidal, J. T.; Camargo, L. F. A.; Doi, A.; Rebello Pinho, J. R."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Brazil"}, "date": {"value": "2022-12-09"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-01-18"}, "PPX_accession": {"value": "PP_006W0VA.1", "url": "https://pathoplexus.org/seq/PP_006W0VA.1"}, "abbr_authors": {"value": "Amgarten et al."}, "INSDC_accession": {"value": "OQ092244.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OQ092244.1"}, "institution": {"value": "Hospital Israelita Albert Einstein, Varsomics"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3387}}, "branch_attrs": {"mutations": {"nuc": ["A99G", "C111A", "A126G", "C129T", "C141T", "G144A", "T147C", "T150C", "C180G", "T192A", "G198A", "A199G", "A211T", "A216T", "A231G", "C243T", "T246C", "T258C", "A261T", "A279G", "C282T", "T321A", "C324T", "A339T", "A357C", "A372C", "C375T", "C376T", "T378A", "T381G", "G384C", "T390C", "A405G", "T418C", "C454T", "A486G", "G487A", "G495A", "A501T", "A525C", "G558A", "A567T", "T570C", "A576C", "T585C", "C591T", "A594T", "G597A", "A600G", "G604A", "T606A", "C618T", "A630C", "C633T", "T636A", "C637T", "A642C", "T645C", "C681T", "T687G", "C690T", "G711A", "G720A", "C721A", "T722A", "A723T", "A732T", "A744G", "A780C", "G783T", "T792C", "T798C", "A810G", "A819G", "A822G", "A830T", "T840C", "C841T", "A843G", "A846T", "A858T", "C870T", "A874C", "T888C", "G900A", "A924T", "T930C", "C933T", "G939A", "G945A", "A948G", "A952G", "A957T", "A982T", "T1017G", "T1032C", "A1035G", "C1042T", "A1052G", "T1053C", "A1054C", "C1059T", "A1062T", "G1071C", "T1074C", "A1095G", "T1098A", "C1101T", "T1116C", "G1119A", "T1131A", "G1152A", "G1177A", "A1179T", "A1185T", "A1191T", "C1194G", "T1204C", "C1212A", "T1215C", "A1218G", "C1251A", "T1254C", "C1257T", "A1269G", "A1287G", "G1293A", "A1295G", "C1329G", "C1332T", "T1353G", "G1374A", "G1380A", "G1389A", "T1404C", "T1407A", "A1413G", "C1416T", "C1428T", "C1434T", "G1446A", "C1461T", "T1468C", "T1480C", "G1488T", "A1503T", "A1509G", "C1519T", "T1521A", "C1530G", "A1557T", "A1560C", "T1572C", "G1573A", "T1574C", "A1578C", "A1587G", "G1593A", "C1595T", "A1596G", "A1611T", "T1614C", "T1620C", "G1626A", "T1629C", "A1632G", "T1639A", "G1647T", "A1653G", "T1656C", "T1662A", "C1668T", "C1707T", "A1725T", "A1734T", "A1737G", "T1743C", "A1749G", "C1755T", "A1764C", "G1794A", "A1800C", "A1815G", "T1825G", "A1836G", "T1837C", "A1848G", "T1860C", "G1875C", "A1881G", "A1884T", "A1893G", "C1905T", "T1908G", "T1923C", "C1929T", "C1941T", "C1950A", "T1951C", "T1983A", "A1989T", "T1995A", "T1998A", "A2004T", "A2013G", "T2016C", "A2028C", "A2034T", "T2037C", "T2052G", "G2082A", "C2083T", "T2091C", "A2094T", "C2115T", "G2130A", "C2133G", "T2158A", "C2163T", "C2166A", "C2169T", "T2175C", "A2184G", "A2205G", "T2208C", "G2217A", "A2238C", "T2247A", "G2250A", "T2265C", "C2277T", "A2283G", "A2301G", "T2304A", "C2316T", "G2334A", "A2343G", "T2346G", "C2355T", "G2364A", "A2376G", "C2391T", "T2394A", "T2400C", "T2415C", "A2424G", "T2430C", "T2442C", "T2454G", "G2460A", "T2466G", "A2484G", "G2496A", "A2502G", "A2520T", "C2556T", "G2583A", "T2589A", "T2595A", "A2622G", "C2635T", "A2655G", "A2664C", "G2670T", "T2673C", "T2724A", "T2763A", "G2772A", "A2778G", "G2781A", "C2787A", "C2790T", "A2796T", "A2805G", "C2814T", "G2820A", "T2838C", "T2847C", "A2863G", "T2874C", "C2886T", "T2898C", "A2901G", "A2913G", "T2923C", "T2928C", "A2929C", "A2931G", "T2937A", "A2940C", "T2943C", "G2946A", "T2977C", "G3000T", "T3015G", "T3045G", "G3054A", "G3069A", "A3072T", "T3102C", "A3108T", "A3114T", "C3123T", "A3130C", "G3132A", "T3135A", "T3156A", "A3162G", "T3171C", "A3174T", "A3183T", "T3213C", "T3222A", "T3243C", "C3267T", "T3273A", "C3282T", "G3285A", "T3303C", "T3309C", "A3313G", "G3345A", "A3363G", "T3366C", "T3369G", "C3372T", "T3381A", "G3390A", "T3393C", "G3405A", "C3408T", "T3414C", "T3426C", "C3438T", "G3444A", "C3453T"], "GPC": ["I50V", "T54S", "T104A", "V146I", "E175D", "V185I", "L224N", "I227V", "S235T", "H260L", "E265D", "I301V", "T335P", "V376I", "K415R", "I426M", "V508T", "A515V", "F530I", "S592A", "K614R", "S703T", "D933E", "T938A", "T1088A"], "Gc": ["S52T", "T287A", "T437A"], "Gn": ["I50V", "A54S", "T104A", "V146I", "E175D", "L224N", "I227V", "H260L", "E265D", "I301V", "N334S", "A335P", "V376I", "K415R", "I426M", "V508T", "M514V", "A515V", "F530I", "S592A"]}, "labels": {"aa": "GPC: I50V, T54S, T104A, V146I, E175D, V185I, L224N, I227V, S235T, H260L, E265D, I301V, T335P, V376I, K415R, I426M, V508T, A515V, F530I, S592A, K614R, S703T, D933E, T938A, T1088A; Gc: S52T, T287A, T437A; Gn: I50V, A54S, T104A, V146I, E175D, L224N, I227V, H260L, E265D, I301V, N334S, A335P, V376I, K415R, I426M, V508T, M514V, A515V, F530I, S592A"}}}, {"name": "NODE_0000003", "node_attrs": {"div": 0.0654554, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T168G", "T201A", "C255A", "G330A", "A342C", "C363A", "A393C", "A399T", "T408A", "A417C", "C444G", "G456T", "C493T", "A510C", "G565A", "C582A", "T612C", "C624T", "T646G", "A648T", "A726G", "G735A", "A891T", "T915C", "G966A", "C983G", "C993A", "T1002A", "C1005A", "C1104T", "C1164T", "A1209T", "G1335A", "C1494A", "A1503G", "C1515T", "A1527C", "A1683C", "T1698C", "C1701A", "T1773A", "C1785T", "C1845G", "C1873T", "A1911C", "A1980G", "T2016G", "A2125C", "G2220T", "T2271A", "T2289A", "T2379A", "G2406T", "A2433G", "G2445A", "C2478T", "T2599C", "A2607T", "A2619G", "A2718G", "C2748A", "T2757A", "T2842C", "A2850C", "T2856C", "T2958C", "C2964G", "A3012T", "A3051T", "T3255C", "T3354A", "A3400G", "A3441T", "T3473-", "C3518A", "A3559-", "A3576-", "C3577-", "G3579-"], "GPC": ["V172I", "S199A", "I1006M", "I1117V"], "Gc": ["E282D", "I355M", "I466V"], "Gn": ["V172I", "S199A"]}, "labels": {"aa": "GPC: V172I, S199A, I1006M, I1117V; Gc: E282D, I355M, I466V; Gn: V172I, S199A"}}, "children": [{"name": "PP_006VLUU|Ol22996|nan/XXXX-XX-XX", "node_attrs": {"div": 0.173715, "strain": {"value": "PP_006VLUU|Ol22996|nan/XXXX-XX-XX"}, "accession": "PP_006VLUU", "author": {"author": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C.", "value": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "1997-12-01"}, "PPX_accession": {"value": "PP_006VLUU.1", "url": "https://pathoplexus.org/seq/PP_006VLUU.1"}, "abbr_authors": {"value": "Calderon et al."}, "INSDC_accession": {"value": "AF028024.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF028024.1"}, "institution": {"value": "University of Nevada, Microbiology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "host": {"value": "mice and others"}, "length": {"value": 3646}}, "branch_attrs": {"mutations": {"nuc": ["A30G", "C32T", "T43C", "A81G", "T94G", "G96C", "C111T", "C141T", "G144A", "T150C", "G153T", "A156T", "A183G", "G193A", "G194A", "G195C", "A204C", "A209G", "A211G", "T222C", "T223C", "A225G", "C237T", "A244G", "C253T", "C256T", "T258C", "A261C", "A264G", "T265C", "T273C", "G309A", "A327C", "A339T", "T340G", "C342T", "A345G", "G361A", "A366G", "T378A", "G391A", "T394C", "T399C", "C406T", "A408G", "G423T", "G427A", "T429C", "A432G", "A436C", "C442T", "T447C", "T456C", "C458A", "T465C", "A473G", "T492C", "A501C", "C531T", "C546G", "T548C", "T552C", "G558A", "T561C", "G564A", "A594T", "C621T", "T627C", "G628T", "T636G", "T663C", "A678T", "C690T", "T696C", "A708G", "G720A", "A723C", "G729A", "G747A", "T756C", "A762T", "A771G", "G783A", "A786G", "T798A", "A822G", "T834G", "A876G", "T882A", "A892C", "C903T", "T909C", "C921T", "T930C", "T931C", "A936G", "G945C", "A951G", "C978T", "T987C", "C991T", "G999A", "A1002G", "G1009T", "T1017A", "C1029T", "T1032A", "A1044T", "G1047A", "A1048C", "A1052G", "A1054G", "A1087T", "A1089G", "A1092T", "G1119A", "A1126C", "A1161T", "A1182T", "A1191T", "C1197T", "T1203C", "G1206A", "T1215A", "T1233C", "C1236T", "T1239A", "T1248G", "T1290G", "T1299C", "A1300C", "A1302G", "T1305C", "A1308T", "G1311A", "T1326C", "C1329T", "G1339A", "T1341G", "T1365C", "G1374A", "C1386A", "T1387C", "G1395A", "C1398A", "T1399C", "G1410A", "A1419T", "C1425A", "C1440T", "G1446A", "C1467T", "A1470G", "C1476T", "G1479A", "A1491T", "A1494G", "T1495C", "A1497G", "T1500C", "A1509C", "T1521C", "A1524T", "C1533T", "A1566T", "T1567C", "G1591A", "T1602C", "T1620A", "G1626A", "A1632G", "A1638G", "T1639C", "T1641C", "G1647A", "A1653G", "T1656G", "T1662A", "G1665A", "G1674A", "G1713A", "A1730T", "A1731G", "C1732T", "A1767G", "A1773G", "T1776C", "A1800T", "C1809T", "T1833C", "A1848G", "A1857G", "G1875A", "A1887G", "G1892A", "A1895G", "A1917T", "G1938A", "C1941T", "C1950A", "G1968T", "A1989C", "T1995A", "A2004G", "G2022A", "A2043C", "G2059A", "T2061C", "A2064G", "A2070G", "A2073T", "G2082A", "A2085T", "A2097T", "A2103C", "C2109T", "T2139C", "C2166T", "G2178A", "G2187A", "A2193G", "A2196T", "A2202T", "G2217A", "T2220C", "A2235C", "T2244C", "A2271G", "T2292C", "A2295C", "G2310A", "T2313C", "C2316T", "T2337C", "T2358C", "C2370T", "A2376G", "A2397C", "T2412G", "T2415C", "T2430A", "C2448T", "T2454A", "A2457G", "A2467C", "A2475T", "A2502T", "C2505T", "G2535A", "G2547A", "C2556T", "T2571G", "T2574C", "A2577G", "T2589G", "C2592T", "T2595G", "T2596C", "G2598A", "G2601T", "A2613G", "T2634A", "T2649G", "T2652C", "T2661C", "A2664C", "G2670A", "T2676A", "T2679G", "T2715A", "A2727C", "T2730A", "C2734A", "A2739G", "T2742C", "T2793A", "A2796C", "A2803C", "C2814A", "C2829T", "T2841C", "G2844C", "G2871A", "T2895C", "T2919C", "A2922T", "G2925A", "T2934C", "T2937C", "C2950T", "C2976T", "G2979A", "C3033A", "T3039A", "A3048G", "C3057T", "G3060A", "A3072C", "T3078C", "A3084C", "T3090C", "T3105C", "G3118A", "T3124C", "A3126G", "G3132A", "T3135G", "C3138T", "T3159A", "G3168A", "T3177C", "T3180C", "T3186C", "T3222G", "A3234G", "C3237T", "T3243C", "A3252G", "T3258A", "A3261G", "C3267T", "T3276C", "C3282T", "T3306C", "T3318C", "A3320G", "T3333C", "G3345A", "G3357A", "T3360C", "A3363G", "T3387A", "T3393C", "G3394A", "G3396A", "C3403T", "A3418G", "A3420G", "T3441C", "A3460G", "T3465G", "T3472G", "-3473A", "-3474A", "A3475T", "C3476A", "-3478T", "-3479G", "-3480T", "-3482T", "-3483G", "-3484C", "-3485A", "-3486T", "-3487T", "-3488T", "T3491G", "-3492A", "-3494A", "-3495T", "-3496A", "-3497A", "T3500A", "C3502-", "G3509T", "C3510A", "T3516C", "A3521G", "C3530A", "A3531C", "T3533-", "A3534-", "A3535-", "T3538-", "C3550G", "T3555-", "A3556-", "T3557-", "T3558-", "C3569T", "T3570-", "T3571-", "T3572-", "A3573-", "T3574-", "A3581-", "C3582-", "C3624T", "A3630T", "T3631C", "T3634G", "A3645C"], "GPC": ["L15V", "G48N", "E53G", "T54A", "N65D", "H69Y", "S72P", "S97A", "V114I", "K124N", "V126I", "T129P", "T136N", "H141R", "F166S", "A193S", "I227V", "S235T", "Y294H", "A320S", "T335A", "I346L", "I359L", "V430M", "V514M", "F530L", "E560V", "K615R", "V670I", "C866W", "A1023T", "K1090R", "V1115I", "I1123V", "T1137A"], "Gc": ["V19I", "C215W", "A372T", "K439R", "V464I", "I472V", "T486A"], "Gn": ["L15V", "G48N", "E53G", "N65D", "H69Y", "S72P", "S97A", "V114I", "K124N", "V126I", "T129P", "T136N", "H141R", "F166S", "I185V", "A193S", "I227V", "Y294H", "A320S", "N334S", "I346L", "I359L", "V430M", "F530L", "E560V", "R614K", "K615R"]}, "labels": {"aa": "GPC: L15V, G48N, E53G, T54A, N65D, H69Y, S72P, S97A, V114I, K124N, V126I, T129P, T136N, H141R, F166S, A193S, I227V, S235T, Y294H, A320S, T335A, I346L, I359L, V430M, V514M, F530L, E560V, K615R, V670I, C866W, A1023T, K1090R, V1115I, I1123V, T1137A; Gc: V19I, C215W, A372T, K439R, V464I, I472V, T486A; Gn: L15V, G48N, E53G, N65D, H69Y, S72P, S97A, V114I, K124N, V126I, T129P, T136N, H141R, F166S, I185V, A193S, I227V, Y294H, A320S, N334S, I346L, I359L, V430M, F530L, E560V, R614K, K615R"}}}, {"name": "NODE_0000004", "node_attrs": {"div": 0.131878, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A37G", "A41G", "T46A", "A93T", "T159C", "A177T", "A183T", "T186A", "T213A", "C252T", "A255G", "G303A", "T351C", "T400G", "T414C", "G420A", "A426G", "A441G", "C462T", "A468G", "C477T", "C516T", "T534C", "T570A", "C591G", "G597T", "G604A", "A639G", "G651A", "G730A", "C755G", "T789C", "T807C", "T813C", "C816T", "A819T", "T825C", "A828T", "T834C", "T849C", "T855A", "C870T", "T873C", "A874C", "A885C", "T934C", "A952T", "A969G", "T975C", "C990T", "A996G", "A1038T", "A1041T", "C1042T", "A1062T", "C1086T", "A1110G", "T1125C", "T1131A", "A1137C", "A1143T", "T1155A", "A1173G", "A1185C", "T1200C", "T1203A", "T1245C", "C1251A", "T1254C", "G1293A", "A1296G", "T1359A", "T1404A", "A1413G", "A1431T", "C1461T", "C1476A", "A1482G", "G1488T", "A1524G", "C1542T", "T1563C", "A1569G", "T1572G", "T1582G", "C1584T", "T1585C", "C1668T", "G1671A", "A1725C", "A1734G", "A1740T", "A1746G", "A1764T", "C1809A", "A1823T", "T1825G", "A1836G", "G1839A", "T1851C", "A1890C", "T1899C", "A1920T", "T1935C", "T1962C", "C1966T", "A1971G", "A2007G", "A2028T", "T2049A", "A2055G", "A2058G", "T2077C", "A2079G", "A2094C", "C2109A", "C2118T", "A2124G", "A2145C", "G2151A", "T2247A", "T2262C", "C2277T", "T2286C", "A2340G", "C2355T", "T2388C", "C2391T", "T2394A", "C2409T", "A2421G", "C2451T", "T2454C", "A2487G", "G2496A", "C2526T", "T2530C", "A2532G", "T2538C", "A2541T", "G2547T", "T2562A", "G2565A", "A2628C", "C2635T", "G2640A", "T2673C", "T2682C", "A2685C", "T2697A", "T2703A", "T2775C", "G2781T", "C2790A", "A2826T", "C2859A", "A2862T", "T2889A", "A2913T", "T2937G", "C2961T", "A2991T", "A2994T", "A3021G", "C3028T", "T3030G", "T3036C", "G3054A", "T3063C", "C3066T", "A3108T", "A3111T", "C3138A", "T3147C", "G3150A", "A3183C", "T3201C", "T3207C", "T3222C", "C3237A", "A3261T", "C3264T", "T3279A", "T3378A", "G3390T", "A3402T", "A3420T", "C3421T", "C3423A", "T3429C", "C3435T", "A3445C", "A3447G", "A3459G", "T3517-", "G3529-", "-3536T", "C3546A", "A3552T", "T3553G", "T3554C", "A3563-", "C3626T"], "GPC": ["T104A", "S117A", "V185I", "I301L", "S334N", "F511V", "Y591F", "S592A", "K614R"], "Gn": ["A54T", "T104A", "S117A", "T235S", "I301L", "A335T", "F511V", "Y591F", "S592A"]}, "labels": {"aa": "GPC: T104A, S117A, V185I, I301L, S334N, F511V, Y591F, S592A, K614R; Gn: A54T, T104A, S117A, T235S, I301L, A335T, F511V, Y591F, S592A"}}, "children": [{"name": "PP_006W100|Lechiguanas|Argentina/2022-XX-XX", "node_attrs": {"div": 0.18738, "strain": {"value": "PP_006W100|Lechiguanas|Argentina/2022-XX-XX"}, "accession": "PP_006W100", "author": {"author": "Bellomo, C. M.; Alonso, D. O.; Martinez, V. P.; Sanchez Loria, J.; Campos, J.", "value": "Bellomo, C. M.; Alonso, D. O.; Martinez, V. P.; Sanchez Loria, J.; Campos, J."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2022-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-07-01"}, "PPX_accession": {"value": "PP_006W100.1", "url": "https://pathoplexus.org/seq/PP_006W100.1"}, "abbr_authors": {"value": "Bellomo et al."}, "INSDC_accession": {"value": "OR890440.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR890440.1"}, "institution": {"value": "INEI-ANLIS \"Dr C. G. Malbran\", Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "yellow pygmy rice rat"}, "length": {"value": 3653}}, "branch_attrs": {"mutations": {"nuc": ["T93C", "T94G", "C129T", "A132G", "T162C", "G189A", "C229T", "A231G", "T246C", "A279G", "A318C", "A339C", "A354G", "C375T", "G384A", "C393T", "C417T", "T429C", "G480A", "T489C", "G507A", "G528A", "T552C", "A576G", "G579A", "A603G", "C621T", "G628A", "C633T", "C637T", "G669A", "T693C", "T696C", "A710G", "T741C", "A750C", "A762G", "C807A", "T870G", "A876G", "T882C", "C921T", "C933T", "G939A", "G945A", "C975A", "T981C", "T987C", "A1020G", "T1041C", "A1065G", "T1074C", "A1095G", "C1101T", "G1122A", "T1146C", "A1161T", "A1167G", "A1179G", "C1194A", "C1212T", "T1239A", "C1257T", "T1284C", "G1311A", "G1317A", "C1320A", "T1326C", "T1344C", "C1386T", "G1395C", "C1416T", "G1437T", "A1470G", "A1476G", "T1488C", "T1500C", "A1509T", "C1527G", "C1530T", "C1548T", "C1549T", "A1590G", "G1591A", "A1611C", "T1635C", "C1645T", "A1686G", "C1692T", "C1707T", "G1719A", "A1728G", "C1732T", "A1749G", "C1755T", "A1767G", "T1827C", "T1833C", "T1860C", "A1866G", "A1869G", "G1875A", "A1881G", "A1884G", "G1888A", "T1908C", "A1926G", "C1929T", "T1947C", "T1951C", "T1956A", "A1972G", "A1974G", "A1989G", "T1998C", "A2025T", "T2037C", "T2052A", "T2091C", "C2095T", "C2131T", "C2133A", "C2172T", "A2184G", "T2223C", "T2331C", "T2346C", "T2361A", "G2364A", "T2373A", "T2382C", "T2403A", "T2412C", "G2436A", "A2439T", "T2463C", "A2469G", "G2499A", "A2577G", "T2580C", "T2586C", "T2589A", "C2604T", "A2616G", "T2625G", "A2632G", "T2634C", "A2637G", "T2658C", "G2670A", "T2712C", "A2727G", "A2748G", "T2751C", "A2796G", "T2823C", "T2826C", "T2841C", "C2850T", "A2877G", "T2907C", "T2916C", "T2923C", "G2925A", "T2949C", "T3042A", "T3045C", "A3096T", "T3108C", "T3111C", "A3114T", "A3126G", "A3162G", "T3180C", "T3186C", "T3192C", "A3219G", "T3228C", "A3240G", "A3336G", "T3339A", "T3390C", "T3414C", "A3423G", "C3438T", "A3481-", "T3491G", "A3501C", "-3517A", "A3521G", "T3523A", "-3529T", "C3530T", "C3532T", "T3533C", "T3536C", "-3537T", "T3540C", "T3549C", "-3559T", "-3563T", "T3571G", "-3580A", "A3645C"], "GPC": ["L15V", "A193T", "K220R", "K448N", "V514M", "V613I", "T641A", "I861V"], "Gc": ["I210V"], "Gn": ["L15V", "A193T", "K220R", "K448N", "V613I", "T641A"]}, "labels": {"aa": "GPC: L15V, A193T, K220R, K448N, V514M, V613I, T641A, I861V; Gc: I210V; Gn: L15V, A193T, K220R, K448N, V613I, T641A"}}}, {"name": "NODE_0000005", "node_attrs": {"div": 0.191258, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C111G", "A175G", "C180T", "T222C", "A231T", "C237T", "T249C", "A261T", "A267C", "A297G", "A315C", "A330T", "T340G", "A345G", "G360A", "A363T", "A372G", "C387T", "A405G", "T438G", "C442T", "C474T", "C510T", "T585C", "C601T", "T606A", "A609G", "C618T", "T660C", "T663A", "A675T", "A705T", "C717T", "A723T", "A855G", "T867C", "T909C", "A927G", "A936T", "G963A", "A993G", "G999A", "T1011A", "C1026T", "A1044G", "G1071A", "T1098C", "T1149C", "G1152A", "A1155G", "A1176G", "C1188T", "C1197T", "G1206A", "A1218G", "G1242A", "A1244G", "T1323C", "A1336C", "T1353C", "T1371C", "C1428T", "C1467T", "T1468C", "T1480C", "A1497G", "T1515A", "C1522T", "C1533T", "T1536C", "T1542A", "A1551G", "C1575T", "C1576T", "A1578G", "G1593A", "T1602C", "T1641C", "G1650A", "T1656C", "A1659G", "G1674A", "C1752T", "T1758A", "C1770T", "C1779T", "A1809G", "C1830T", "T1837C", "A1839T", "A1878G", "C1911T", "T1912C", "T1983C", "T2010C", "A2013C", "C2014T", "G2019A", "G2022A", "T2028C", "A2049G", "C2083T", "T2088C", "T2100A", "A2127G", "T2136C", "T2208C", "G2250A", "T2253A", "A2274C", "G2334A", "C2352A", "T2358C", "T2367C", "A2424G", "T2430A", "T2442C", "A2475G", "C2481T", "C2485T", "A2490T", "C2505T", "G2508A", "T2529C", "A2562G", "T2568G", "T2607C", "A2613G", "A2631T", "A2691G", "A2703G", "T2742C", "A2754T", "T2784C", "C2787T", "T2799C", "A2802G", "C2814T", "C2829T", "G2844T", "C2868T", "T2883C", "C2886T", "T2895C", "A2902C", "G2904A", "T2913C", "G2946A", "C2950T", "G2964T", "G2988A", "A3003T", "C3033T", "G3060A", "T3093A", "T3141C", "T3153G", "G3168A", "A3189G", "T3195C", "T3210C", "G3270A", "T3273C", "T3276C", "T3303C", "T3309A", "G3342A", "T3351C", "C3352T", "A3354G", "T3361C", "A3363C", "T3366C", "T3369C", "C3408T", "T3411C", "G3444A", "C3453T", "-3478T", "-3480T", "-3483T", "-3486T", "-3487G", "-3488C", "C3502A", "T3505G", "C3506T", "G3509A", "C3510G", "A3511C", "T3512C", "A3515-", "T3516-", "A3518-", "A3519-", "T3524A", "G3526C", "T3528-", "-3537G", "T3538C", "A3539T", "T3541A", "A3542T", "G3545A", "A3547T", "T3549-", "A3560-", "C3561-", "T3562-", "T3564-", "A3565-", "-3575T", "-3576A", "-3577C", "-3578T", "-3579G", "-3580T", "C3582T", "-3583A", "-3584A", "-3585C"], "GPC": ["I42V", "E88D", "S97A", "N398S"], "Gn": ["I42V", "E88D", "S97A", "N398S", "M514V"]}, "labels": {"aa": "GPC: I42V, E88D, S97A, N398S; Gn: I42V, E88D, S97A, N398S, M514V"}}, "children": [{"name": "PP_006VLSY|Of22819|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207251, "strain": {"value": "PP_006VLSY|Of22819|nan/XXXX-XX-XX"}, "accession": "PP_006VLSY", "author": {"author": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C.", "value": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "1997-12-01"}, "PPX_accession": {"value": "PP_006VLSY.1", "url": "https://pathoplexus.org/seq/PP_006VLSY.1"}, "abbr_authors": {"value": "Calderon et al."}, "INSDC_accession": {"value": "AF028022.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF028022.1"}, "institution": {"value": "University of Nevada, Microbiology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "host": {"value": "yellow pygmy rice rat"}, "length": {"value": 3653}}, "branch_attrs": {"mutations": {"nuc": ["T169A", "A170T", "T171A", "T273C", "C282T", "G306A", "T312C", "C393T", "T447C", "A551T", "T561C", "A594G", "C621T", "A651G", "A744G", "G783A", "C813T", "G844A", "G864A", "G872C", "T1074C", "T1109C", "T1299C", "A1314G", "C1362T", "G1395A", "T1422C", "A1542G", "C1732T", "T1860C", "C1962T", "G1968A", "C2077T", "G2079A", "G2130A", "C2133T", "C2213A", "A2214C", "T2265C", "C2286T", "A2301G", "G2325A", "G2421A", "C2604T", "T2712C", "A2757G", "A2853T", "C2976T", "G3118C", "C3119A", "T3129A", "A3279G", "C3372T", "C3438T", "-3479G", "-3482T", "G3487A", "A3489T", "T3491A", "-3492A", "-3493G", "-3494C", "-3495A", "-3496T", "-3497T", "T3520-"], "GPC": ["Y40I", "N167I", "E265K", "S274T", "V353A", "T721N", "A1023H"], "Gc": ["T70N", "A372H"], "Gn": ["Y40I", "N167I", "E265K", "S274T", "V353A"]}, "labels": {"aa": "GPC: Y40I, N167I, E265K, S274T, V353A, T721N, A1023H; Gc: T70N, A372H; Gn: Y40I, N167I, E265K, S274T, V353A"}}}, {"name": "NODE_0000006", "node_attrs": {"div": 0.195154, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A225G", "T321G", "G564A", "A822G", "A1056G", "T1920C", "G2217A", "T2259C", "T2361G", "T2511C", "-3484C", "-3485A"]}}, "children": [{"name": "PP_006W27K|ER19-SP1693|Argentina/2019-XX-XX", "node_attrs": {"div": 0.208814, "strain": {"value": "PP_006W27K|ER19-SP1693|Argentina/2019-XX-XX"}, "accession": "PP_006W27K", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2019-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W27K.1", "url": "https://pathoplexus.org/seq/PP_006W27K.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Entre Rios"}, "INSDC_accession": {"value": "OR987856.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987856.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3632}}, "branch_attrs": {"mutations": {"nuc": ["A81G", "C129T", "A165G", "T183G", "A305G", "T456G", "T493C", "T552C", "G579A", "A678G", "C681T", "T699C", "T727C", "T936C", "C975T", "T1032A", "T1053C", "G1122A", "T1204C", "T1248C", "A1515G", "G1551A", "G1569A", "C1641T", "G1746A", "G1788C", "C1810T", "C2163T", "A2394G", "A2430G", "C2530T", "T2596C", "A2632G", "C2673T", "A2853G", "G3021A", "A3054G", "A3060G", "A3096G", "T3111C", "T3261C", "C3276A", "G3456A", "T3470C", "A3471T", "-3479T", "-3482C", "T3486A", "A3503G", "C3511-", "C3512-", "T3513-", "T3514-", "-3515C", "-3516C", "-3517T", "-3518C", "-3519A", "A3521-", "T3522-", "C3532T", "C3554T"], "GPC": ["K85R", "M579I", "I861V", "D1075E"], "Gc": ["I210V", "D424E"], "Gn": ["K85R", "M579I"]}, "labels": {"aa": "GPC: K85R, M579I, I861V, D1075E; Gc: I210V, D424E; Gn: K85R, M579I"}}}, {"name": "NODE_0000007", "node_attrs": {"div": 0.199196, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G168T", "T183C", "C249T", "T252C", "A366G", "T378C", "A786G", "A1065G", "A1179G", "T1284C", "G1482A", "C1725T", "A2085G", "C2742T", "C3369T", "C3526T"]}}, "children": [{"name": "PP_006W1SF|BA18-LD1633|Argentina/2018-XX-XX", "node_attrs": {"div": 0.205705, "strain": {"value": "PP_006W1SF|BA18-LD1633|Argentina/2018-XX-XX"}, "accession": "PP_006W1SF", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2018-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1SF.1", "url": "https://pathoplexus.org/seq/PP_006W1SF.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "PP151164.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151164.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3613}}, "branch_attrs": {"mutations": {"nuc": ["A204C", "T285C", "C351T", "C362T", "C375T", "T684C", "A1071G", "A1084G", "T1150C", "C1185T", "T1197C", "T1215C", "G1794A", "A1872C", "A1926G", "C1983T", "A2100G", "A2394G", "T2517C", "G2562A", "T2580C", "C2673T", "C2913T", "T3472G", "-3473T", "-3474C", "A3475-", "C3476-", "C3477-", "T3478-", "T3480-", "A3481-", "T3483-", "C3488T", "-3492T", "-3493A", "-3494C", "-3495T", "-3496C", "-3497A", "T3498A", "T3500-", "A3501-", "A3502C", "G3505T", "A3509G", "G3510A", "C3511A", "C3512T", "T3513G", "-3515C", "-3516C", "-3517T"], "GPC": ["A104V", "I345V"], "Gn": ["A104V", "I345V"]}, "labels": {"aa": "GPC: A104V, I345V; Gn: A104V, I345V"}}}, {"name": "PP_006W1RH|BA18-RR1620|Argentina/2018-XX-XX", "node_attrs": {"div": 0.207544, "strain": {"value": "PP_006W1RH|BA18-RR1620|Argentina/2018-XX-XX"}, "accession": "PP_006W1RH", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2018-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1RH.1", "url": "https://pathoplexus.org/seq/PP_006W1RH.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "PP151163.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151163.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3628}}, "branch_attrs": {"mutations": {"nuc": ["A204G", "G345A", "G396A", "G669A", "T696C", "C781T", "T870C", "A1203G", "C1257T", "A1546G", "A1863G", "A2120T", "C2172T", "G2364A", "G2421A", "A2469G", "C2592T", "G2601A", "G2613A", "T2769C", "T2874C", "C2913A", "A3138G", "A3240G", "C3282T", "T3306C", "C3351T", "C3429T", "-3479T", "-3482C", "T3486A", "A3503G", "T3520-"], "GPC": ["I499V", "Y690F"], "Gc": ["Y39F"], "Gn": ["I499V"]}, "labels": {"aa": "GPC: I499V, Y690F; Gc: Y39F; Gn: I499V"}}}]}]}]}]}]}]}, {"name": "NODE_0000008", "node_attrs": {"div": 0.105017, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A28G", "A39G", "C111T", "T120C", "A131G", "A132G", "A156C", "C157T", "A159G", "C180G", "T192C", "T196C", "A204G", "A219G", "A225G", "C243T", "A264C", "A297G", "G309A", "A315T", "T355G", "G361A", "C363T", "A366G", "T369A", "C387A", "A393G", "T394C", "T408C", "T414C", "G427A", "T438A", "A441T", "C454T", "G456A", "C462T", "T465C", "C474T", "G480A", "T504A", "G507A", "A508G", "T509C", "A510T", "T534C", "G554A", "C555T", "A576G", "C582T", "C621T", "C624T", "A642T", "T645C", "T654A", "T657C", "T663C", "C671T", "A672G", "C679T", "T693C", "A705T", "G711A", "C717T", "C721T", "A723G", "A726G", "G730A", "A744G", "G747A", "T753C", "C755G", "A774G", "T789G", "T801C", "T804C", "A810T", "C816T", "C826T", "A828G", "A837G", "T840C", "C841T", "A861T", "A894G", "G900A", "C903T", "A927G", "T930A", "A932T", "G945T", "A948C", "T975C", "C978T", "C1005A", "T1017C", "A1044G", "G1050A", "A1052C", "C1059T", "A1065G", "T1067A", "G1071A", "A1080T", "A1095G", "T1098C", "C1101T", "G1108A", "T1109C", "A1110C", "T1116C", "C1134T", "T1150C", "T1155C", "C1158T", "T1159G", "A1179C", "A1182T", "C1257T", "A1260T", "T1263C", "C1266A", "A1269T", "A1272T", "T1290G", "T1299C", "A1302G", "T1305C", "T1326C", "C1329T", "C1332T", "A1338G", "C1362T", "T1399C", "A1401G", "T1404A", "T1407A", "T1422C", "C1476T", "C1494T", "C1533T", "C1542A", "A1566C", "G1591A", "T1602C", "C1608T", "T1620C", "T1635C", "C1645T", "A1659G", "G1671A", "A1686C", "C1732T", "A1740C", "T1758C", "A1764G", "T1776C", "C1779T", "T1791A", "T1824C", "C1830T", "G1839A", "T1851C", "A1880G", "A1890C", "G1892A", "C1905T", "A1917G", "C1950G", "T1951C", "T1956G", "G1968C", "A2007G", "G2019T", "T2052A", "A2058G", "A2079G", "A2085G", "A2097T", "T2100A", "C2109T", "T2121C", "C2133T", "T2136C", "T2148C", "A2154G", "C2166T", "C2169T", "A2193G", "T2241C", "G2250A", "A2274C", "A2283G", "A2295G", "G2310A", "A2322G", "A2343T", "T2346C", "C2352T", "T2367C", "C2370T", "T2388C", "A2397T", "C2409T", "C2410T", "T2412A", "A2418G", "A2421C", "T2455C", "A2457G", "A2475T", "A2490T", "G2508A", "T2538A", "G2560A", "T2562A", "G2565A", "T2571C", "T2574A", "A2577G", "T2580C", "C2592T", "T2595C", "G2610C", "A2613T", "T2625G", "A2632G", "T2634A", "A2655T", "T2658A", "T2703A", "T2712C", "T2715C", "A2727G", "C2748A", "T2757A", "A2766T", "T2784C", "C2787A", "T2793A", "A2835T", "T2838C", "A2850T", "C2859T", "G2871A", "T2898C", "C2917T", "T2919A", "C2964A", "C2976T", "T2977C", "G2979A", "T2982C", "A2991T", "G3000A", "C3028T", "T3030A", "C3033T", "T3042C", "T3045A", "A3048G", "A3051T", "G3060T", "C3091A", "T3093G", "T3105C", "A3114T", "T3117C", "G3118T", "C3123T", "T3156A", "T3177G", "T3186C", "A3189G", "T3204A", "T3207C", "T3213A", "T3228G", "C3237A", "C3244T", "T3246A", "A3261G", "C3264T", "C3288A", "T3309A", "T3318C", "T3351C", "T3354C", "G3357A", "A3400G", "A3402T", "C3433T", "C3435A", "A3450G", "A3459G", "-3474G", "C3476-", "C3477-", "A3481-", "A3501T", "T3505C", "T3522A", "T3524A", "G3526A", "-3536C", "-3537C", "T3538A", "T3540C", "A3547-", "T3554G", "A3556C", "T3562A", "A3563C", "T3566-", "-3575T", "-3578A", "-3580T", "C3582T", "-3583A", "-3584A", "-3585C", "T3590A", "T3606C", "C3617T", "A3621T", "C3626T"], "GPC": ["K27R", "V126I", "I153A", "S168N", "T207M", "Y294F", "Q315K", "S334A", "F339Y", "I353T", "S370A", "V514M", "K610R", "V837I", "I861V", "L1014M", "I1117V"], "Gc": ["V186I", "I210V", "E282D", "L363M", "A372S", "I466V"], "Gn": ["K27R", "A54T", "E88D", "S102A", "V126I", "I153A", "S168N", "I185V", "T207M", "T235S", "Y294F", "N334A", "A335T", "F339Y", "V353T", "S370A", "K610R", "R614K"]}, "labels": {"aa": "GPC: K27R, V126I, I153A, S168N, T207M, Y294F, Q315K, S334A, F339Y, I353T, S370A, V514M, K610R, V837I, I861V, L1014M, I1117V; Gc: V186I, I210V, E282D, L363M, A372S, I466V; Gn: K27R, A54T, E88D, S102A, V126I, I153A, S168N, I185V, T207M, T235S, Y294F, N334A, A335T, F339Y, V353T, S370A, K610R, R614K"}}, "children": [{"name": "PP_006VLTW|Hu39694|nan/XXXX-XX-XX", "node_attrs": {"div": 0.124353, "strain": {"value": "PP_006VLTW|Hu39694|nan/XXXX-XX-XX"}, "accession": "PP_006VLTW", "author": {"author": "Levis, S.; Morzunov, S. P.; Rowe, J. E.; Enria, D.; Pini, N.; Calderon, G.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C.", "value": "Levis, S.; Morzunov, S. P.; Rowe, J. E.; Enria, D.; Pini, N.; Calderon, G.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "1997-12-01"}, "PPX_accession": {"value": "PP_006VLTW.1", "url": "https://pathoplexus.org/seq/PP_006VLTW.1"}, "abbr_authors": {"value": "Levis et al."}, "INSDC_accession": {"value": "AF028023.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF028023.1"}, "institution": {"value": "University of Nevada, Microbiology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3654}}, "branch_attrs": {"mutations": {"nuc": ["A113G", "C215T", "G330A", "A387G", "T441C", "G508T", "T549C", "C633T", "T684A", "T727C", "T768C", "T810C", "T849C", "C860T", "G864A", "T867G", "G868T", "G883A", "C993T", "T1053C", "A1071C", "T1080C", "C1086A", "G1152T", "C1188T", "A1243C", "A1282C", "G1290A", "T1353A", "G1383A", "C1386T", "T1387C", "A1396G", "C1397A", "T1473C", "A1497G", "G1647A", "T1761C", "A1815G", "A1926G", "G1938A", "T1986C", "G2130A", "T2133G", "C2172T", "T2292C", "T2319C", "G2377T", "A2385G", "C2421T", "G2460A", "G2632C", "G2736A", "A2748G", "T2775C", "T2904C", "G3175-", "G3270A", "T3294C", "G3396A", "G3428A", "T3500C", "C3546-", "T3558C"], "GPC": ["K21R", "A55V", "A153S", "A270V", "V273F", "V278I", "A311T", "A334T", "N398H", "N411H", "T449D", "V776F", "V861L", "G1042-", "S1126N"], "Gc": ["V125F", "V210L", "G391-", "S475N"], "Gn": ["K21R", "A55V", "A153S", "A270V", "V273F", "V278I", "A311T", "A334T", "N398H", "N411H", "T449D"]}, "labels": {"aa": "GPC: K21R, A55V, A153S, A270V, V273F, V278I, A311T, A334T, N398H, N411H, T449D, V776F, V861L, G1042-, S1126N; Gc: V125F, V210L, G391-, S475N; Gn: K21R, A55V, A153S, A270V, V273F, V278I, A311T, A334T, N398H, N411H, T449D"}}}, {"name": "NODE_0000009", "node_attrs": {"div": 0.115148, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C282T", "T285C", "C516T", "G579A", "C852T", "A982G", "T987C", "C1029T", "A1051G", "T1134G", "A1191G", "C1212G", "G1242A", "T1359C", "C1530T", "A1561G", "T1563A", "C1576T", "A1731G", "T1923C", "G1953T", "A1980G", "A2040G", "T2139C", "G2178A", "A2190G", "T2223C", "T2262C", "T2394A", "A2532G", "T2667C", "C2886T", "T2907C", "C3442A", "-3547T", "C3548-", "C3550A"], "GPC": ["I504V"], "Gn": ["I504V"]}, "labels": {"aa": "GPC: I504V; Gn: I504V"}}, "children": [{"name": "NODE_0000010", "node_attrs": {"div": 0.128767, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T94A", "C202T", "T273C", "T315C", "A327G", "A486G", "T582C", "T642A", "T696C", "G729A", "A786G", "T909C", "C937A", "C1040T", "C1042T", "A1173G", "T1182A", "C1299T", "G1590A", "C1704T", "C1707T", "G1713A", "A1803G", "A1863G", "T1969C", "T1983C", "A2034G", "T2037C", "A2070G", "G2406C", "T2586C", "T2766C", "A2922G", "T2923C", "G2925A", "T2934C", "T2937G", "T2943C", "T3123C", "T3210C", "T3222C", "C3351T", "C3372T", "T3411C", "T3517C", "A3525G", "T3553G", "G3554T", "C3556T"], "GPC": ["L15M", "P51S", "T330I"], "Gn": ["L15M", "P51S", "T330I"]}, "labels": {"aa": "GPC: L15M, P51S, T330I; Gn: L15M, P51S, T330I"}}, "children": [{"name": "PP_006W1MR|BA10-GJ1165|Argentina/2010-XX-XX", "node_attrs": {"div": 0.128768, "strain": {"value": "PP_006W1MR|BA10-GJ1165|Argentina/2010-XX-XX"}, "accession": "PP_006W1MR", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2010-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1MR.1", "url": "https://pathoplexus.org/seq/PP_006W1MR.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR987854.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987854.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3556}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W1NP|BA10-OE1169|Argentina/2010-XX-XX", "node_attrs": {"div": 0.128768, "strain": {"value": "PP_006W1NP|BA10-OE1169|Argentina/2010-XX-XX"}, "accession": "PP_006W1NP", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2010-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1NP.1", "url": "https://pathoplexus.org/seq/PP_006W1NP.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR987855.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987855.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3556}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000011", "node_attrs": {"div": 0.123539, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T123C", "C192T", "G219A", "A261G", "A291G", "G303A", "T462C", "C465T", "C534T", "C660T", "G789T", "C801T", "T807G", "T888C", "C1179T", "T1233C", "T1356C", "A1404G", "T1455C", "C1824T", "A2043C", "A2499G", "A2560G", "C2610T", "C2733T", "C2961T", "T3033C", "G3132A", "A3246G", "T3470C", "T3592C"], "GPC": ["I837V"], "Gc": ["I186V"]}, "labels": {"aa": "GPC: I837V; Gc: I186V"}}, "children": [{"name": "NODE_0000012", "node_attrs": {"div": 0.12669, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C324T", "G966T", "G1647A", "A1869G", "G1938A", "A2796C", "A2919G", "T2943C", "C3105T", "G3390T", "T3429C", "A3522G", "T3582-", "A3583T", "C3585A"]}}, "children": [{"name": "PP_006W1G2|BA02_SMM484|Argentina/2002-XX-XX", "node_attrs": {"div": 0.126691, "strain": {"value": "PP_006W1G2|BA02_SMM484|Argentina/2002-XX-XX"}, "accession": "PP_006W1G2", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-16"}, "PPX_accession": {"value": "PP_006W1G2.1", "url": "https://pathoplexus.org/seq/PP_006W1G2.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR965908.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR965908.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3622}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0UC|Arg-h484|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.126691, "strain": {"value": "PP_006W0UC|Arg-h484|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0UC", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "PPX_accession": {"value": "PP_006W0UC.1", "url": "https://pathoplexus.org/seq/PP_006W0UC.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555731.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555731.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3622}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000013", "node_attrs": {"div": 0.124042, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A2863G"], "GPC": ["T938A"], "Gc": ["T287A"]}, "labels": {"aa": "GPC: T938A; Gc: T287A"}}, "children": [{"name": "NODE_0000014", "node_attrs": {"div": 0.125165, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T429C", "T1530C", "T2166C", "-3492T", "-3493A", "-3494T", "-3495T", "-3496C", "-3497A", "T3501A", "C3505T", "C3506T", "G3509-", "C3510-", "A3511-", "T3512-", "T3513-", "T3514-", "A3515-", "T3516-"]}}, "children": [{"name": "PP_006W1UB|BA11-MH1249|Argentina/2011-XX-XX", "node_attrs": {"div": 0.128953, "strain": {"value": "PP_006W1UB|BA11-MH1249|Argentina/2011-XX-XX"}, "accession": "PP_006W1UB", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2011-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1UB.1", "url": "https://pathoplexus.org/seq/PP_006W1UB.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "PP003839.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP003839.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3501}}, "branch_attrs": {"mutations": {"nuc": ["C2115T", "A2124G", "C2391T", "T2586A", "C2667T", "A2988G", "T3046C", "G3147A", "C3186T", "C3192T", "G3246A", "T3582-", "A3583T", "C3585A"]}}}, {"name": "PP_006W1TD|BA17_SD1583|Argentina/2017-XX-XX", "node_attrs": {"div": 0.129896, "strain": {"value": "PP_006W1TD|BA17_SD1583|Argentina/2017-XX-XX"}, "accession": "PP_006W1TD", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2017-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1TD.1", "url": "https://pathoplexus.org/seq/PP_006W1TD.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "PP003838.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP003838.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3561}}, "branch_attrs": {"mutations": {"nuc": ["G153A", "C324T", "A522T", "G528A", "T621C", "C663T", "C948T", "C1042T", "C1128T", "G1380A", "G1453A", "T1495C", "T1521C", "A2698G", "C3105T"], "GPC": ["D468N", "S883G"], "Gc": ["S232G"], "Gn": ["D468N"]}, "labels": {"aa": "GPC: D468N, S883G; Gc: S232G; Gn: D468N"}}}]}, {"name": "NODE_0000015", "node_attrs": {"div": 0.124888, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C781T", "G1950C", "A3162G"]}}, "children": [{"name": "PP_006W1LT|BA16_LJC1557|Argentina/2016-XX-XX", "node_attrs": {"div": 0.129496, "strain": {"value": "PP_006W1LT|BA16_LJC1557|Argentina/2016-XX-XX"}, "accession": "PP_006W1LT", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez- Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez- Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2016-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1LT.1", "url": "https://pathoplexus.org/seq/PP_006W1LT.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR987853.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987853.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3624}}, "branch_attrs": {"mutations": {"nuc": ["C618T", "C637T", "G837A", "C921T", "C1155T", "G1167A", "T1248C", "C1356T", "C2262T", "G2283A", "C2605T", "C2667T", "T2850C", "G3048A", "G3246A", "C3324T"]}}}, {"name": "NODE_0000016", "node_attrs": {"div": 0.127571, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G651A", "T909C", "T1149C", "C1704T", "G1965A", "C2391T", "C2715T", "G2736A", "T2892C"]}}, "children": [{"name": "NODE_0000017", "node_attrs": {"div": 0.130743, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G291A", "G330A", "A480G", "G495A", "G1191A", "G1354A", "A1914G", "C2083T", "G2406A", "G2518A", "C2667T"], "GPC": ["V435I", "A823T"], "Gc": ["A172T"], "Gn": ["V435I"]}, "labels": {"aa": "GPC: V435I, A823T; Gc: A172T; Gn: V435I"}}, "children": [{"name": "PP_006W24R|BA02_AOA490|Argentina/2002-XX-XX", "node_attrs": {"div": 0.130745, "strain": {"value": "PP_006W24R|BA02_AOA490|Argentina/2002-XX-XX"}, "accession": "PP_006W24R", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W24R.1", "url": "https://pathoplexus.org/seq/PP_006W24R.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR987851.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987851.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3616}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000018", "node_attrs": {"div": 0.130746, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W25P|BA02_ROM495|Argentina/2002-XX-XX", "node_attrs": {"div": 0.131036, "strain": {"value": "PP_006W25P|BA02_ROM495|Argentina/2002-XX-XX"}, "accession": "PP_006W25P", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W25P.1", "url": "https://pathoplexus.org/seq/PP_006W25P.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR987852.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987852.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3610}}, "branch_attrs": {"mutations": {"nuc": ["A17C", "G22A", "A23C", "A24T", "C26A", "G28A", "A30G", "C32A", "G34T", "A36T", "A37T", "A38G", "G39A", "T42G", "T43G", "T45-", "T46-", "G47-", "A48-", "A49-", "A50-", "G51-", "A52-", "T1605C"]}}}, {"name": "PP_006W23T|BA02_RJF487|Argentina/2002-XX-XX", "node_attrs": {"div": 0.130748, "strain": {"value": "PP_006W23T|BA02_RJF487|Argentina/2002-XX-XX"}, "accession": "PP_006W23T", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W23T.1", "url": "https://pathoplexus.org/seq/PP_006W23T.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR987850.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987850.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3492}}, "branch_attrs": {"mutations": {"nuc": ["T3547-", "T3549-", "A3550-", "T3551-", "A3552-", "T3553-", "G3554-", "T3555-", "C3556-", "T3557-", "T3558-", "A3559-", "A3560-", "C3561-", "A3562-", "C3563T", "-3566T", "A3568T", "C3569G", "T3570-", "T3571-", "A3573C", "C3577A", "G3579A", "T3580C", "T3582C", "A3583T", "C3585A", "C3586A", "A3590T", "C3592T"]}}}]}]}, {"name": "NODE_0000019", "node_attrs": {"div": 0.129392, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G204A", "C804T", "C1042T", "A1524G", "C2466T", "A2979G", "C3540T"]}}, "children": [{"name": "PP_006W1JX|BA02_VVD480|Argentina/2002-XX-XX", "node_attrs": {"div": 0.129685, "strain": {"value": "PP_006W1JX|BA02_VVD480|Argentina/2002-XX-XX"}, "accession": "PP_006W1JX", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-16"}, "PPX_accession": {"value": "PP_006W1JX.1", "url": "https://pathoplexus.org/seq/PP_006W1JX.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR965910.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR965910.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3628}}, "branch_attrs": {"mutations": {"nuc": ["T798C"]}}}, {"name": "NODE_0000020", "node_attrs": {"div": 0.129395, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W1HZ|BA02_VVN481|Argentina/2002-XX-XX", "node_attrs": {"div": 0.129397, "strain": {"value": "PP_006W1HZ|BA02_VVN481|Argentina/2002-XX-XX"}, "accession": "PP_006W1HZ", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-16"}, "PPX_accession": {"value": "PP_006W1HZ.1", "url": "https://pathoplexus.org/seq/PP_006W1HZ.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR965909.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR965909.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3545}}, "branch_attrs": {"mutations": {"nuc": ["G28A", "A30G", "C32A", "G34T", "A36T", "A37T", "A38G", "G39A", "T42G", "T43G", "T45-", "T46-", "G47-", "A48-", "A49-", "A50-", "G51-", "A52-"]}}}, {"name": "PP_006W1KV|BA02_VO483|Argentina/2002-XX-XX", "node_attrs": {"div": 0.129397, "strain": {"value": "PP_006W1KV|BA02_VO483|Argentina/2002-XX-XX"}, "accession": "PP_006W1KV", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-16"}, "PPX_accession": {"value": "PP_006W1KV.1", "url": "https://pathoplexus.org/seq/PP_006W1KV.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR965911.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR965911.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3634}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000021", "node_attrs": {"div": 0.0437024, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T45A", "G51A", "A70G", "T192G", "A211G", "A231T", "C252T", "G303A", "A345C", "T400C", "C402T", "T429A", "C459A", "A468G", "T552A", "G597T", "A600G", "A603G", "C618T", "T627A", "A639G", "A672T", "A681G", "C690T", "C717A", "T807A", "T855A", "A861T", "C921T", "C937A", "A951T", "A954C", "A970T", "G971C", "C1026T", "T1032C", "G1047T", "A1054G", "A1077T", "T1125A", "C1132A", "T1146C", "T1149C", "C1164T", "A1179G", "C1212A", "A1218T", "T1224C", "C1281A", "T1341A", "T1365C", "G1380A", "C1386A", "C1416T", "T1425A", "C1440T", "T1464C", "T1468C", "G1479A", "A1509C", "C1549T", "G1570A", "T1585C", "C1595T", "A1644C", "G1650A", "G1665A", "T1692A", "A1699G", "A1745G", "C1752T", "C1785A", "A1812G", "T1827C", "T1860A", "A1869G", "A1887G", "C1906A", "T1908A", "G1932A", "G1938A", "T1947G", "G1965A", "G1987A", "A1989T", "T1998A", "T2076C", "C2115T", "A2124G", "T2142A", "A2160T", "T2175C", "G2187A", "A2212C", "T2304A", "T2331C", "A2382G", "G2460A", "G2583A", "T2625G", "T2649C", "T2652A", "T2673C", "A2691C", "A2709G", "T2715A", "T2721C", "T2841C", "T2847A", "T2889A", "A2922C", "G2925A", "T2973A", "C3033A", "T3042C", "A3096T", "T3120A", "T3124C", "C3126T", "C3138T", "G3150A", "G3270A", "T3273C", "C3279A", "T3303A", "T3306A", "T3339A", "C3372T", "G3396T", "C3423A", "C3442A", "T3470C", "-3478T", "-3482A", "-3483T", "-3485C", "-3488C", "-3494A", "-3495T", "-3536G", "G3545A", "C3546A", "A3559G", "T3570A", "-3575T", "-3583T", "-3584A", "A3591C"], "GPC": ["T54A", "E206D", "D222E", "S334N", "T335A", "L361I", "V507I", "A515L", "I550V", "K565R", "D933E", "S1023A"], "Gn": ["I7V", "S117P", "D222E", "L361I", "V507I", "A515L", "I550V", "K565R", "V646I"]}, "labels": {"aa": "GPC: T54A, E206D, D222E, S334N, T335A, L361I, V507I, A515L, I550V, K565R, D933E, S1023A; Gn: I7V, S117P, D222E, L361I, V507I, A515L, I550V, K565R, V646I"}}, "children": [{"name": "PP_006W1Z1|13796_M|Argentina|1990|Argentina/1990-XX-XX", "node_attrs": {"div": 0.187394, "strain": {"value": "PP_006W1Z1|13796_M|Argentina|1990|Argentina/1990-XX-XX"}, "accession": "PP_006W1Z1", "author": {"author": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J.", "value": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "1990-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-04-30"}, "PPX_accession": {"value": "PP_006W1Z1.1", "url": "https://pathoplexus.org/seq/PP_006W1Z1.1"}, "abbr_authors": {"value": "Shedroff et al."}, "INSDC_accession": {"value": "PP058741.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP058741.1"}, "institution": {"value": "Centers for Disease Control and Prevention, Viral Special Pathogens Branch"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "mice and others"}, "length": {"value": 3696}}, "branch_attrs": {"mutations": {"nuc": ["A2G", "C32T", "A37G", "A41C", "G47A", "A81G", "C87T", "G102T", "A105T", "C111A", "A113G", "C127T", "C129G", "C141T", "G144T", "G153T", "A156G", "C157T", "T162A", "T168A", "A175G", "C180T", "A183T", "T186C", "A189C", "A199G", "C202A", "A204T", "A205G", "T207C", "A209G", "C215T", "A216T", "T217G", "T222C", "T223C", "A259C", "A261C", "A262C", "C263T", "T267C", "A291G", "T294G", "A315G", "T321G", "C345T", "A348G", "C362T", "C363A", "A366G", "C387A", "A393C", "G396A", "A399T", "A405G", "C406T", "T408A", "T418C", "G420A", "G423A", "A425G", "A426G", "A441G", "C442T", "C444T", "T453C", "T465C", "C489G", "T490C", "C493T", "G495A", "A501G", "G507C", "A522T", "A526C", "G528C", "C555T", "G558A", "A559G", "G564A", "C591T", "A594G", "T597C", "G609A", "T612A", "T645C", "T646A", "C656T", "T663A", "C671T", "T696C", "A700G", "C701T", "A702T", "G711A", "C721A", "A723G", "T727C", "C755G", "T756C", "C765G", "A780T", "G783T", "T789C", "T790C", "T795C", "T801C", "T804C", "T825A", "T834G", "C841T", "C852T", "C853A", "A871G", "T873G", "A874C", "G875A", "A876C", "A885C", "A892C", "A894T", "C903T", "T915C", "T922G", "T930G", "C933T", "A942T", "A948T", "A952G", "C954T", "A955G", "A960T", "G966A", "A982G", "T987A", "A994C", "A996G", "C1001T", "C1005T", "A1035G", "A1065G", "T1068C", "T1077C", "A1080T", "G1083A", "C1104T", "T1109A", "T1116C", "G1122A", "A1173G", "C1197T", "T1200C", "T1203C", "G1206A", "T1218C", "C1233A", "T1239A", "T1248C", "C1251T", "C1257T", "C1266A", "A1269C", "A1281G", "C1284T", "T1290A", "A1296G", "A1300C", "A1302T", "G1317A", "T1323C", "C1329A", "G1335A", "A1341G", "C1353G", "G1354A", "T1356C", "T1368C", "C1392A", "T1399C", "A1401T", "C1428T", "C1434T", "C1435T", "A1443T", "T1444C", "G1446A", "C1461A", "A1467G", "T1480C", "T1495C", "A1503T", "C1509T", "C1515T", "A1516C", "C1519T", "T1521G", "A1524T", "C1526T", "C1530T", "A1557G", "G1558A", "A1569G", "C1575T", "T1582A", "T1592C", "G1593A", "A1622G", "T1635C", "T1641A", "G1647A", "T1656A", "G1674A", "A1683C", "T1695C", "T1710G", "G1713A", "A1725T", "A1731G", "A1749G", "C1755T", "A1756C", "A1764G", "T1773A", "C1779T", "T1791A", "C1809T", "T1821C", "C1830T", "T1833C", "A1836G", "G1839A", "A1842T", "G1843A", "G1844A", "C1845T", "A1848G", "C1873T", "A1895G", "A1917T", "A1920G", "G1953A", "T1956C", "G1963A", "T1969C", "A1974C", "G1976T", "C1981T", "T1983G", "T1986C", "C1997T", "A1998G", "T2010C", "A2013T", "G2019T", "G2022A", "T2023G", "A2025T", "A2040T", "G2059C", "A2073T", "G2082A", "A2085G", "A2094C", "T2100A", "T2112A", "G2130A", "C2131T", "C2133A", "A2142G", "G2151A", "A2154G", "C2166A", "C2169T", "G2178A", "G2191A", "A2193C", "C2212T", "G2220A", "A2235G", "A2236G", "C2237T", "A2238G", "T2239C", "T2241A", "T2247C", "C2273A", "C2278A", "T2289C", "T2292C", "G2310A", "C2316T", "C2342A", "A2343T", "T2361A", "C2370T", "T2400C", "T2403G", "G2404A", "G2406A", "T2415C", "A2418G", "C2419T", "A2421G", "T2442C", "G2445A", "C2448A", "T2454C", "G2472A", "C2478T", "A2479G", "A2490G", "T2523C", "T2530C", "A2532T", "A2541T", "G2547T", "G2560A", "T2571A", "T2574C", "C2578T", "T2580A", "T2598A", "T2599C", "C2604T", "T2631G", "T2634A", "C2635T", "A2643G", "T2658C", "T2661C", "G2662T", "T2679C", "T2682C", "C2691T", "T2697A", "C2733T", "A2739G", "G2746C", "G2747A", "A2754G", "T2769C", "C2787T", "A2788G", "A2796C", "A2806T", "C2814T", "A2826T", "T2842C", "A2844T", "A2862C", "G2871A", "A2901C", "T2919C", "G2920A", "T2937G", "T2943C", "A2952G", "T2958C", "C2964T", "C2976T", "A2994T", "A3003T", "T3009A", "A3012G", "T3015G", "G3021T", "T3024C", "T3030C", "A3037G", "C3038T", "T3046C", "A3048C", "G3054A", "G3062A", "A3072G", "A3076G", "A3081G", "C3091T", "T3093A", "T3096C", "T3102C", "A3111T", "T3141C", "G3147A", "A3153G", "T3159G", "T3165C", "T3180A", "T3195C", "A3202T", "T3207G", "T3227C", "A3234T", "A3240C", "T3276C", "G3285A", "T3291C", "T3300A", "T3309A", "T3316G", "C3330T", "T3333A", "G3345A", "C3349T", "T3351A", "G3357T", "T3360A", "T3361C", "A3376G", "T3378A", "G3390C", "C3403T", "G3405A", "T3414A", "A3420C", "C3421T", "T3429C", "A3430C", "C3438T", "A3441G", "G3444A", "C3453T", "C3461A", "T3465G", "G3469T", "T3472G", "-3479A", "-3480G", "-3484G", "T3490A", "A3492G", "-3493T", "-3496C", "T3498-", "A3499-", "A3501C", "T3504A", "C3506-", "T3514C", "T3516C", "T3517A", "T3520C", "T3523A", "G3526A", "G3529A", "C3530T", "C3532-", "-3537G", "T3544C", "A3546G", "C3548T", "C3550A", "T3558-", "C3561G", "T3562C", "T3564C", "-3578C", "-3580C", "T3589A", "C3615A"], "GPC": ["K21R", "I42V", "E46D", "I50V", "S51T", "I52V", "E53G", "A55V", "S56A", "T70P", "T71L", "D88E", "A102S", "T104V", "K125R", "L131F", "Y147H", "I170V", "S199T", "A202V", "T207I", "T217V", "L224M", "I227V", "Y247H", "S274G", "R275H", "S291A", "I301V", "T302A", "D312E", "T317I", "I353E", "V435I", "M489L", "S492L", "A503T", "F511I", "V514A", "N524S", "F530L", "H553Q", "I569L", "G598N", "K614R", "K615R", "V638I", "C642F", "A649V", "S658A", "V670L", "V714I", "T721S", "T729V", "F730L", "A741E", "Q743K", "T764N", "V785I", "I810V", "V837I", "I860M", "A871S", "G899H", "I913V", "M919L", "V957I", "T996V", "S1004N", "I1009V", "T1051S", "D1052E", "V1059A", "F1089V", "I1109V", "I1127L", "T1137N"], "Gc": ["S7A", "V19L", "V63I", "T70S", "T78V", "F79L", "A90E", "Q92K", "T113N", "V134I", "I159V", "V186I", "I209M", "A220S", "G248H", "I262V", "M268L", "V306I", "T345V", "S353N", "I358V", "T400S", "D401E", "V408A", "F438V", "I458V", "I476L", "T486N"], "Gn": ["K21R", "I42V", "E46D", "I50V", "I52V", "E53G", "A55V", "S56A", "T70P", "T71L", "F78Y", "T104V", "K125R", "L131F", "Y147H", "I170V", "I185V", "S199T", "A202V", "T207I", "T217V", "L224M", "I227V", "T235S", "Y247H", "I260H", "S274G", "R275H", "S291A", "I301V", "T302A", "D312E", "K315Q", "T317I", "V353E", "V435I", "M489L", "S492L", "A503T", "M514A", "N524S", "F530L", "H553Q", "I569L", "G598N", "K615R", "C642F", "A649V"]}, "labels": {"aa": "GPC: K21R, I42V, E46D, I50V, S51T, I52V, E53G, A55V, S56A, T70P, T71L, D88E, A102S, T104V, K125R, L131F, Y147H, I170V, S199T, A202V, T207I, T217V, L224M, I227V, Y247H, S274G, R275H, S291A, I301V, T302A, D312E, T317I, I353E, V435I, M489L, S492L, A503T, F511I, V514A, N524S, F530L, H553Q, I569L, G598N, K614R, K615R, V638I, C642F, A649V, S658A, V670L, V714I, T721S, T729V, F730L, A741E, Q743K, T764N, V785I, I810V, V837I, I860M, A871S, G899H, I913V, M919L, V957I, T996V, S1004N, I1009V, T1051S, D1052E, V1059A, F1089V, I1109V, I1127L, T1137N; Gc: S7A, V19L, V63I, T70S, T78V, F79L, A90E, Q92K, T113N, V134I, I159V, V186I, I209M, A220S, G248H, I262V, M268L, V306I, T345V, S353N, I358V, T400S, D401E, V408A, F438V, I458V, I476L, T486N; Gn: K21R, I42V, E46D, I50V, I52V, E53G, A55V, S56A, T70P, T71L, F78Y, T104V, K125R, L131F, Y147H, I170V, I185V, S199T, A202V, T207I, T217V, L224M, I227V, T235S, Y247H, I260H, S274G, R275H, S291A, I301V, T302A, D312E, K315Q, T317I, V353E, V435I, M489L, S492L, A503T, M514A, N524S, F530L, H553Q, I569L, G598N, K615R, C642F, A649V"}}}, {"name": "NODE_0000022", "node_attrs": {"div": 0.158281, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C32A", "G34T", "A38G", "A41G", "A45G", "G47T", "A48T", "T67C", "T74C", "C75T", "T76C", "G78T", "C89A", "A93G", "A126G", "C129T", "T147C", "A156T", "T171C", "T186A", "C190T", "C195T", "C202T", "A219T", "T223A", "A234G", "A240T", "C243T", "C255T", "A264G", "A271G", "T273C", "A276G", "A279G", "C282T", "A284T", "T285C", "T288C", "G309A", "A315C", "A327C", "G330A", "A342C", "A348C", "T355G", "G361A", "A372T", "C379A", "G391A", "T438A", "A441C", "C444G", "G456A", "C474T", "A486T", "A508C", "A510G", "A525T", "G528A", "C531T", "A540T", "C546G", "T570C", "C582A", "C591A", "G604A", "T636A", "C637T", "T645A", "A648T", "G651A", "A675T", "A678C", "G685A", "A688T", "T699C", "A708G", "T714G", "A717G", "T727G", "G730A", "G735A", "A750T", "A751C", "T753G", "T756A", "C765T", "T768C", "A774G", "C781T", "T798G", "A810G", "C816T", "C826T", "C829A", "A830T", "A843G", "T849C", "C852A", "A855G", "A858T", "G864A", "A876G", "A880C", "T888C", "A891T", "A894G", "T897A", "C910G", "A912T", "T915A", "A927G", "G928A", "A936G", "G939A", "T972A", "C978T", "T981C", "T984A", "C993A", "T1002A", "T1011A", "T1014C", "T1017C", "A1038G", "T1047C", "C1086A", "A1092G", "G1108A", "A1126G", "C1128A", "T1150C", "G1152A", "T1155A", "C1158A", "A1182T", "C1188T", "T1203A", "T1204C", "A1209G", "A1221T", "G1242A", "A1260C", "T1290C", "A1295G", "G1305A", "G1311A", "A1314G", "T1320A", "C1332T", "A1336C", "A1338G", "A1347G", "G1383C", "G1389A", "G1395A", "A1401G", "C1410A", "A1419T", "G1458A", "C1476A", "G1488C", "C1494A", "C1530A", "T1536C", "T1539C", "C1542G", "A1551G", "A1554T", "A1557T", "A1561G", "T1563A", "T1572A", "G1573A", "C1575A", "C1576T", "T1583G", "C1584T", "A1589G", "G1593T", "A1596G", "C1608T", "A1611C", "T1617C", "T1641C", "A1677T", "A1692G", "C1701A", "C1704T", "C1707T", "A1728G", "A1734T", "G1788A", "G1794A", "A1800T", "T1818C", "C1845A", "A1857G", "G1866A", "G1875T", "A1881G", "G1892A", "T1912C", "A1917G", "A1924C", "C1941T", "C1950T", "T1956A", "T1962C", "G1963C", "A1971G", "C1981A", "A1984G", "A2007G", "T2016A", "C2017A", "A2028T", "A2043T", "A2055T", "A2058G", "G2059A", "A2070G", "T2088C", "A2097G", "C2118T", "T2121C", "T2136A", "T2139C", "C2145T", "A2157G", "C2163T", "A2196T", "A2202T", "A2205G", "T2208C", "A2214C", "G2217A", "G2220T", "T2286C", "A2301G", "G2305T", "A2307T", "T2313C", "T2328C", "T2346C", "C2355T", "G2364T", "T2367C", "T2373A", "A2376G", "A2385T", "T2388G", "C2391T", "A2397T", "G2406T", "T2430G", "A2439C", "C2451T", "G2469A", "A2475T", "A2484G", "G2496A", "T2538A", "A2550G", "A2553C", "T2559A", "T2562G", "G2565C", "T2568A", "C2592T", "C2605T", "G2610T", "T2614C", "T2631C", "T2634C", "G2637T", "G2640A", "T2658A", "A2694T", "A2695C", "C2730A", "C2734A", "C2748T", "A2754C", "T2763A", "A2766T", "G2772A", "G2781A", "C2790T", "C2814A", "G2820A", "A2853T", "T2856C", "T2895A", "C2902A", "T2904A", "T2907C", "C2950T", "T2982C", "A3012T", "T3018C", "T3045A", "C3066T", "T3069G", "T3117A", "T3129C", "T3135C", "A3162G", "T3165A", "G3168T", "T3177G", "T3204A", "T3210C", "T3213C", "G3226C", "T3255A", "T3258A", "A3261C", "C3267T", "C3282T", "C3288T", "T3312C", "T3318C", "G3321A", "T3333C", "A3342T", "T3360C", "T3366C", "T3369G", "T3387A", "G3405C", "C3408T", "T3409C", "T3411C", "A3417C", "C3421A", "A3423G", "T3426C", "A3430G", "A3441C", "-3474A", "-3479C", "-3480A", "-3484C", "-3486T", "-3493G", "-3496T", "-3497A", "C3506T", "A3515T", "-3537A", "T3553G", "A3563T", "C3569G", "C3577T", "-3578G", "-3580A", "T3589C", "T3590A", "C3617T", "A3621T"], "GPC": ["V8A", "S13Y", "L58I", "T74A", "Y78F", "V114I", "I153L", "V185I", "V212I", "T213S", "L226V", "I234L", "S235T", "H260I", "I277L", "P287A", "G293S", "A311T", "Q315K", "I359V", "K415R", "I504V", "V508I", "F511C", "K513R", "M579I", "V638L", "L644I", "I645V", "L656M", "V670I", "T721P", "A752S", "T882P", "I1006M", "V1059L", "F1120L", "L1124M", "I1127V"], "Gc": ["L5M", "V19I", "T70P", "A101S", "T231P", "I355M", "V408L", "F469L", "L473M", "I476V"], "Gn": ["V8A", "S13Y", "T51S", "L58I", "T74A", "E88D", "S102A", "V114I", "I153L", "V212I", "T213S", "L226V", "I234L", "I277L", "P287A", "G293S", "A311T", "V353I", "I359V", "K415R", "I504V", "V508I", "I511C", "K513R", "M514V", "M579I", "R614K", "I638L", "L644I", "I645V"]}, "labels": {"aa": "GPC: V8A, S13Y, L58I, T74A, Y78F, V114I, I153L, V185I, V212I, T213S, L226V, I234L, S235T, H260I, I277L, P287A, G293S, A311T, Q315K, I359V, K415R, I504V, V508I, F511C, K513R, M579I, V638L, L644I, I645V, L656M, V670I, T721P, A752S, T882P, I1006M, V1059L, F1120L, L1124M, I1127V; Gc: L5M, V19I, T70P, A101S, T231P, I355M, V408L, F469L, L473M, I476V; Gn: V8A, S13Y, T51S, L58I, T74A, E88D, S102A, V114I, I153L, V212I, T213S, L226V, I234L, I277L, P287A, G293S, A311T, V353I, I359V, K415R, I504V, V508I, I511C, K513R, M514V, M579I, R614K, I638L, L644I, I645V"}}, "children": [{"name": "NODE_0000023", "node_attrs": {"div": 0.167409, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T414C", "A417G", "A432G", "C454T", "G609A", "C1104T", "G1122A", "G1230A", "T1398A", "T1485C", "C1522T", "A1587G", "A1803G", "A1845G", "A1926C", "C1973T", "T1977C", "C2095T", "T2148C", "T2241C", "T2259C", "G2601A", "A2863G", "T2967C", "G3132A", "G3345A", "G3394A", "T3414C", "G3509A", "T3515C", "T3588C"], "GPC": ["T641I", "T938A", "V1115I"], "Gc": ["T287A", "V464I"], "Gn": ["T641I"]}, "labels": {"aa": "GPC: T641I, T938A, V1115I; Gc: T287A, V464I; Gn: T641I"}}, "children": [{"name": "NODE_0000024", "node_attrs": {"div": 0.172317, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G45A", "T48C", "C751T", "G846A", "T1275C", "G1347A", "A1389G", "T1399C", "G1917A", "G2022A", "C2133T", "C2175T", "T2199C", "T2397C", "T2475C", "G2547A", "C2685T", "A2835G", "T3009C"]}}, "children": [{"name": "PP_006W09H|AREB14/P3|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172318, "strain": {"value": "PP_006W09H|AREB14/P3|nan/XXXX-XX-XX"}, "accession": "PP_006W09H", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "PPX_accession": {"value": "PP_006W09H.1", "url": "https://pathoplexus.org/seq/PP_006W09H.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850090.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850090.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3643}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000025", "node_attrs": {"div": 0.172318, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W08K|AREB14/P2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172318, "strain": {"value": "PP_006W08K|AREB14/P2|nan/XXXX-XX-XX"}, "accession": "PP_006W08K", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "PPX_accession": {"value": "PP_006W08K.1", "url": "https://pathoplexus.org/seq/PP_006W08K.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850089.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850089.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3679}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W07M|AREB14/P1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172318, "strain": {"value": "PP_006W07M|AREB14/P1|nan/XXXX-XX-XX"}, "accession": "PP_006W07M", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "PPX_accession": {"value": "PP_006W07M.1", "url": "https://pathoplexus.org/seq/PP_006W07M.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850088.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850088.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3639}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000026", "node_attrs": {"div": 0.169779, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T909C", "A1497G", "A1569G", "G1968A", "T2523C", "T2745C", "A2988G", "T3372C"]}}, "children": [{"name": "NODE_0000027", "node_attrs": {"div": 0.170133, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G1671A"]}}, "children": [{"name": "PP_006W0BD|ARLA17/NRC2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.174835, "strain": {"value": "PP_006W0BD|ARLA17/NRC2|nan/XXXX-XX-XX"}, "accession": "PP_006W0BD", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "PPX_accession": {"value": "PP_006W0BD.1", "url": "https://pathoplexus.org/seq/PP_006W0BD.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850092.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850092.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3646}}, "branch_attrs": {"mutations": {"nuc": ["A57C", "G681A", "G1071A", "A1203G", "C1353T", "C1464T", "C1485T", "A1563G", "T1810C", "A1932G", "A2040G", "C2166T", "A2340G", "C2565T", "G3118T", "C3360T", "T3513C", "T3520C", "T3551C"], "GPC": ["E2D", "A1023S"], "Gc": ["A372S"], "Gn": ["E2D"]}, "labels": {"aa": "GPC: E2D, A1023S; Gc: A372S; Gn: E2D"}}}, {"name": "PP_006VZ20|Epilink/96_2/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.172478, "strain": {"value": "PP_006VZ20|Epilink/96_2/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ20", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ20.1", "url": "https://pathoplexus.org/seq/PP_006VZ20.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258189.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258189.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3667}}, "branch_attrs": {"mutations": {"nuc": ["G264A", "G423A", "G1446A", "T1635C", "T2163C", "C2212A", "T2292C", "G2670A"], "GPC": ["P721T"], "Gc": ["P70T"]}, "labels": {"aa": "GPC: P721T; Gc: P70T"}}}]}, {"name": "NODE_0000028", "node_attrs": {"div": 0.171532, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T697C", "G747A", "G798A", "T912C", "A1086C", "T1332C"], "GPC": ["F216L"], "Gn": ["F216L"]}, "labels": {"aa": "GPC: F216L; Gn: F216L"}}, "children": [{"name": "PP_006VZ7Q|NRC-6/18_05/21/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.176895, "strain": {"value": "PP_006VZ7Q|NRC-6/18_05/21/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ7Q", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ7Q.1", "url": "https://pathoplexus.org/seq/PP_006VZ7Q.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258194.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258194.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3664}}, "branch_attrs": {"mutations": {"nuc": ["A31G", "T66C", "C180A", "G279A", "A303G", "G423A", "G480A", "C1435T", "A1458T", "C1929T", "T2112A", "C2133T", "T2163C", "C2212A", "A2622G", "C2631T", "C2787T", "A2796G", "T3030G"], "GPC": ["P721T"], "Gc": ["P70T"]}, "labels": {"aa": "GPC: P721T; Gc: P70T"}}}, {"name": "NODE_0000029", "node_attrs": {"div": 0.175873, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G546T", "A609G", "C633T", "T675C", "A1242G", "T1254C", "C1260T", "A1305G", "A1530C", "G1569A", "T1776C", "T1800C", "C2014T", "G2988A", "A3315T"]}}, "children": [{"name": "PP_006W01Z|Epuyen/18-19_Patient_2_11/23/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175875, "strain": {"value": "PP_006W01Z|Epuyen/18-19_Patient_2_11/23/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006W01Z", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006W01Z.1", "url": "https://pathoplexus.org/seq/PP_006W01Z.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258215.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258215.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3386}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000030", "node_attrs": {"div": 0.175875, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.176167, "strain": {"value": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZAJ", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZAJ.1", "url": "https://pathoplexus.org/seq/PP_006VZAJ.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258197.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258197.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3655}}, "branch_attrs": {"mutations": {"nuc": ["G264A"]}}}, {"name": "NODE_0000031", "node_attrs": {"div": 0.175878, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ8N|Epuyen/18-19_Patient_10_12/10/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZ8N|Epuyen/18-19_Patient_10_12/10/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ8N", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ8N.1", "url": "https://pathoplexus.org/seq/PP_006VZ8N.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258195.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258195.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3639}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000032", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZJ1|Epuyen/18-19_Patient_1_11/3/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZJ1|Epuyen/18-19_Patient_1_11/3/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZJ1", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZJ1.1", "url": "https://pathoplexus.org/seq/PP_006VZJ1.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258205.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258205.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3654}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000033", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZZ5", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZZ5.1", "url": "https://pathoplexus.org/seq/PP_006VZZ5.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258221.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258221.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3654}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000034", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZRM|Epuyen/18-19_Patient_27_1/8/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZRM|Epuyen/18-19_Patient_27_1/8/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZRM", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZRM.1", "url": "https://pathoplexus.org/seq/PP_006VZRM.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258212.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258212.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3647}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000035", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZH3|Epuyen/18-19_Patient_19_1/2/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZH3|Epuyen/18-19_Patient_19_1/2/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZH3", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZH3.1", "url": "https://pathoplexus.org/seq/PP_006VZH3.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258204.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258204.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3656}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000036", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZWB", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZWB.1", "url": "https://pathoplexus.org/seq/PP_006VZWB.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258218.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258218.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3649}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000037", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZBG|Epuyen/18-19_Patient_13_12/24/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZBG|Epuyen/18-19_Patient_13_12/24/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZBG", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZBG.1", "url": "https://pathoplexus.org/seq/PP_006VZBG.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258198.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258198.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3657}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000038", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZX9|Epuyen/18-19_Patient_6_11/25/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZX9|Epuyen/18-19_Patient_6_11/25/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZX9", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZX9.1", "url": "https://pathoplexus.org/seq/PP_006VZX9.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258219.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258219.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3669}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000039", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A2G"]}}, "children": [{"name": "PP_006VZTH|Epuyen/18-19_Patient_29_1/14/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZTH|Epuyen/18-19_Patient_29_1/14/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZTH", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZTH.1", "url": "https://pathoplexus.org/seq/PP_006VZTH.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258214.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258214.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3665}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000040", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZVD|Epuyen/18-19_Patient_4_11/27/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZVD|Epuyen/18-19_Patient_4_11/27/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZVD", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZVD.1", "url": "https://pathoplexus.org/seq/PP_006VZVD.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258217.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258217.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3659}}, "branch_attrs": {"mutations": {"nuc": ["T3551C"]}}}, {"name": "NODE_0000041", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W001|Epuyen/18-19_Patient_9_12/12/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006W001|Epuyen/18-19_Patient_9_12/12/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006W001", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006W001.1", "url": "https://pathoplexus.org/seq/PP_006W001.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258222.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258222.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3669}}, "branch_attrs": {"mutations": {"nuc": ["G3C"]}}}, {"name": "NODE_0000042", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ9L", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ9L.1", "url": "https://pathoplexus.org/seq/PP_006VZ9L.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258196.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258196.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3645}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000043", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZNT", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZNT.1", "url": "https://pathoplexus.org/seq/PP_006VZNT.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258209.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258209.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3652}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000044", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZY7|Epuyen/18-19_Patient_7_12/7/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZY7|Epuyen/18-19_Patient_7_12/7/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZY7", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZY7.1", "url": "https://pathoplexus.org/seq/PP_006VZY7.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258220.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258220.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3655}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000045", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZSK", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZSK.1", "url": "https://pathoplexus.org/seq/PP_006VZSK.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258213.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258213.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3647}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000046", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZKZ|Epuyen/18-19_Patient_20_1/1/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZKZ|Epuyen/18-19_Patient_20_1/1/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZKZ", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZKZ.1", "url": "https://pathoplexus.org/seq/PP_006VZKZ.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258206.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258206.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3655}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000047", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZMV|Epuyen/18-19_Patient_23_1/7/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZMV|Epuyen/18-19_Patient_23_1/7/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZMV", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZMV.1", "url": "https://pathoplexus.org/seq/PP_006VZMV.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258208.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258208.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3646}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000048", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZDC|Epuyen/18-19_Patient_15_12/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZDC|Epuyen/18-19_Patient_15_12/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZDC", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZDC.1", "url": "https://pathoplexus.org/seq/PP_006VZDC.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258200.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258200.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3633}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000049", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2C9|Epuyen|Argentina/2022-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006W2C9|Epuyen|Argentina/2022-XX-XX"}, "accession": "PP_006W2C9", "author": {"author": "Coelho, R.; Kehl, S.; Periolo, N.; Alonso, D.; Bellomo, C.; Martinez, V.", "value": "Coelho, R.; Kehl, S.; Periolo, N.; Alonso, D.; Bellomo, C.; Martinez, V."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2022-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-25"}, "PPX_accession": {"value": "PP_006W2C9.1", "url": "https://pathoplexus.org/seq/PP_006W2C9.1"}, "abbr_authors": {"value": "Coelho et al."}, "INSDC_accession": {"value": "PQ215669.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PQ215669.1"}, "institution": {"value": "INEI ANLIS, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "length": {"value": 3647}}, "branch_attrs": {"mutations": {"nuc": ["A3645C", "T3648G"]}}}, {"name": "NODE_0000050", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZF8|Epuyen/18-19_Patient_17_12/31/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZF8|Epuyen/18-19_Patient_17_12/31/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZF8", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZF8.1", "url": "https://pathoplexus.org/seq/PP_006VZF8.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258202.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258202.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3659}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000051", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZEA", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZEA.1", "url": "https://pathoplexus.org/seq/PP_006VZEA.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258201.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258201.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3651}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000052", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZPR|Epuyen/18-19_Patient_25_1/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZPR|Epuyen/18-19_Patient_25_1/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZPR", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZPR.1", "url": "https://pathoplexus.org/seq/PP_006VZPR.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258210.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258210.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3654}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000053", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZG6|Epuyen/18-19_Patient_18_12/31/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZG6|Epuyen/18-19_Patient_18_12/31/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZG6", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZG6.1", "url": "https://pathoplexus.org/seq/PP_006VZG6.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258203.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258203.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3633}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000054", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZUF|Epuyen/18-19_Patient_3_11/20/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZUF|Epuyen/18-19_Patient_3_11/20/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZUF", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZUF.1", "url": "https://pathoplexus.org/seq/PP_006VZUF.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258216.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258216.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3654}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000055", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZQP|Epuyen/18-19_Patient_26_1/4/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZQP|Epuyen/18-19_Patient_26_1/4/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZQP", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZQP.1", "url": "https://pathoplexus.org/seq/PP_006VZQP.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258211.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258211.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3654}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000056", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZLX|Epuyen/18-19_Patient_22_1/1/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZLX|Epuyen/18-19_Patient_22_1/1/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZLX", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZLX.1", "url": "https://pathoplexus.org/seq/PP_006VZLX.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258207.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258207.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3661}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZCE|Epuyen/18-19_Patient_14_12/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZCE|Epuyen/18-19_Patient_14_12/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZCE", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZCE.1", "url": "https://pathoplexus.org/seq/PP_006VZCE.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258199.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258199.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3658}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000057", "node_attrs": {"div": 0.166188, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A159C", "C324T", "C669T", "A996G", "G1038T", "G1050A", "G1083T", "G1092T", "C1101T", "G1293A", "A1410G", "A1413G", "A1503G", "A1546G", "C1830T", "A1914T", "T1995C", "C2409T", "C2448A", "T2580C", "A2895G", "T2916C", "G2979A", "C3018A", "A3081G", "T3225A", "C3435G", "T3465C"], "GPC": ["I499V"], "Gn": ["I499V"]}, "labels": {"aa": "GPC: I499V; Gn: I499V"}}, "children": [{"name": "NODE_0000058", "node_attrs": {"div": 0.171959, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C147T", "C699T", "G894A", "A1056G", "A1108G", "T1164G", "A1281C", "A1470C", "T1710C", "G2022A", "C2172T", "A2193G", "G2301A", "C2691T", "T2799C", "A2973G", "C3090T", "A3255G", "T3351C", "T3478G"], "GPC": ["I353V"], "Gn": ["I353V"]}, "labels": {"aa": "GPC: I353V; Gn: I353V"}}, "children": [{"name": "NODE_0000059", "node_attrs": {"div": 0.177603, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C111T", "G420A", "T447C", "A456T", "G507A", "C555T", "C643T", "T675C", "T765G", "A771G", "T831C", "C1365T", "A1566G", "C1861T", "T2055C", "C2277T", "C2553T", "C2614T", "A2781G", "G3147A", "T3486C", "T3516C", "T3517C"]}}, "children": [{"name": "NODE_0000060", "node_attrs": {"div": 0.178413, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G444A", "T2052C"]}}, "children": [{"name": "PP_006VZ3Y|NRC-2/97_06/01/1996|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.189694, "strain": {"value": "PP_006VZ3Y|NRC-2/97_06/01/1996|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ3Y", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ3Y.1", "url": "https://pathoplexus.org/seq/PP_006VZ3Y.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258190.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258190.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3646}}, "branch_attrs": {"mutations": {"nuc": ["G86A", "A303G", "C441T", "T456C", "C489T", "G564A", "C624T", "T666C", "G681A", "T912C", "G966A", "C1150T", "G1354A", "A1491G", "T1500C", "T1521A", "T1549C", "G1626A", "A1722T", "C1770T", "G1812A", "T1875G", "A1884G", "T1923C", "T1969C", "C2133T", "C2166T", "T2223C", "C2466T", "T2475C", "A2502G", "C2565A", "A2629G", "T2712C", "T2748G", "G3060A", "C3273T", "C3333T", "C3441T", "A3475G", "A3552G"], "GPC": ["C12Y", "V435I", "I860V"], "Gc": ["I209V"], "Gn": ["C12Y", "V435I"]}, "labels": {"aa": "GPC: C12Y, V435I, I860V; Gc: I209V; Gn: C12Y, V435I"}}}, {"name": "PP_006W05R|1a|Chile/2012-11-XX", "node_attrs": {"div": 0.185892, "strain": {"value": "PP_006W05R|1a|Chile/2012-11-XX"}, "accession": "PP_006W05R", "author": {"author": "Ferres, M.; Martinez-Valdebenito, C.; Angulo, J.; Henriquez, C.; Vera-Otarola, J.; Vergara, M. J.; Perez, J.; Fernandez, J.; Sotomayor, V.; Tischler, N.; Vial, C.; Vial, P.; Mertz, G.; Le Corre, N.", "value": "Ferres, M.; Martinez-Valdebenito, C.; Angulo, J.; Henriquez, C.; Vera-Otarola, J.; Vergara, M. J.; Perez, J.; Fernandez, J.; Sotomayor, V.; Tischler, N.; Vial, C.; Vial, P.; Mertz, G.; Le Corre, N."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Chile"}, "date": {"value": "2012-11-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2021-03-28"}, "PPX_accession": {"value": "PP_006W05R.1", "url": "https://pathoplexus.org/seq/PP_006W05R.1"}, "abbr_authors": {"value": "Ferres et al."}, "INSDC_accession": {"value": "MN807443.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN807443.1"}, "institution": {"value": "Pontificia Universidad Catolica, Laboratorio De Infectologia"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 2031}}, "branch_attrs": {"mutations": {"nuc": ["G144A", "G600A", "G603A", "C675T", "G714A", "T789C", "G945A", "T1263C", "A1341G", "G1413A", "T1455C", "T1662C", "G1674A", "T1758C", "C1818T"]}}}]}, {"name": "NODE_0000061", "node_attrs": {"div": 0.177802, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A993G"]}}, "children": [{"name": "NODE_0000062", "node_attrs": {"div": 0.189481, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G82A", "G264A", "A432G", "A513C", "G615A", "T637C", "T1026C", "G1056A", "T1077C", "G1179A", "C1260T", "T1308C", "T1356C", "G1371A", "G1542A", "T1594C", "T1662C", "G1671A", "T1758C", "C1929T", "G2082A", "T2160A", "C2169T", "T2247C", "C2328T", "C2346T", "G2388A", "G2436A", "C2556T", "T2605C", "A2613G", "T2769C", "T2775C", "G2781T", "C2799T", "A2863G", "C3129T", "T3243C", "A3468G"], "GPC": ["V11I", "T938A"], "Gc": ["T287A"], "Gn": ["V11I"]}, "labels": {"aa": "GPC: V11I, T938A; Gc: T287A; Gn: V11I"}}, "children": [{"name": "PP_006VQHC|CHI-7913|Chile/XXXX-XX-XX", "node_attrs": {"div": 0.19541, "strain": {"value": "PP_006VQHC|CHI-7913|Chile/XXXX-XX-XX"}, "accession": "PP_006VQHC", "author": {"author": "Tischler, N. D.; Fernandez, J.; Muller, I.; Martinez, R.; Galeno, H.; Villagra, E.; Mora, J.; Ramirez, E.; Rosemblatt, M.; Valenzuela, P. D.; Mueller, I.; Valenzuela, P. D. T.", "value": "Tischler, N. D.; Fernandez, J.; Muller, I.; Martinez, R.; Galeno, H.; Villagra, E.; Mora, J.; Ramirez, E.; Rosemblatt, M.; Valenzuela, P. D.; Mueller, I.; Valenzuela, P. D. T."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Chile"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2003-05-01"}, "PPX_accession": {"value": "PP_006VQHC.1", "url": "https://pathoplexus.org/seq/PP_006VQHC.1"}, "abbr_authors": {"value": "Tischler et al."}, "INSDC_accession": {"value": "AY228238.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AY228238.1"}, "institution": {"value": "Fundacion Ciencia para la Vida, Departamento de Desarrollo e Investigacion"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3641}}, "branch_attrs": {"mutations": {"nuc": ["T119C", "T543A", "A709G", "A786G", "C831T", "A837G", "C841T", "C870T", "A894G", "G900A", "T912C", "A918G", "G927A", "T931C", "G1049A", "T1695C", "C2164T", "T2246C", "A2629G", "A3153G", "A3645C", "T3649A", "G3650A", "T3652C"], "GPC": ["I23T", "S164R", "K220E", "Y294H", "R333K", "P705S", "I732T", "I860V"], "Gc": ["P54S", "I81T", "I209V"], "Gn": ["I23T", "S164R", "K220E", "Y294H", "R333K"]}, "labels": {"aa": "GPC: I23T, S164R, K220E, Y294H, R333K, P705S, I732T, I860V; Gc: P54S, I81T, I209V; Gn: I23T, S164R, K220E, Y294H, R333K"}}}, {"name": "NODE_0000063", "node_attrs": {"div": 0.190011, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T826C", "A864G"]}}, "children": [{"name": "PP_006W2HY|CHI-7913|Chile/1999-XX-XX", "node_attrs": {"div": 0.190012, "strain": {"value": "PP_006W2HY|CHI-7913|Chile/1999-XX-XX"}, "accession": "PP_006W2HY", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Chile"}, "date": {"value": "1999-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "PPX_accession": {"value": "PP_006W2HY.1", "url": "https://pathoplexus.org/seq/PP_006W2HY.1"}, "abbr_authors": {"value": "Barrera et al."}, "INSDC_accession": {"value": "PV808471.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808471.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3670}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0CB|CHI-7913|Chile/1999-XX-XX", "node_attrs": {"div": 0.190012, "strain": {"value": "PP_006W0CB|CHI-7913|Chile/1999-XX-XX"}, "accession": "PP_006W0CB", "author": {"author": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D.", "value": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Chile"}, "date": {"value": "1999-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2021-02-27"}, "PPX_accession": {"value": "PP_006W0CB.1", "url": "https://pathoplexus.org/seq/PP_006W0CB.1"}, "abbr_authors": {"value": "Warner et al."}, "INSDC_accession": {"value": "MT956619.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MT956619.1"}, "institution": {"value": "Public Health Agency of Canada, Special Pathogens"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3641}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000064", "node_attrs": {"div": 0.181989, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C342T", "T618C", "A1011G", "A1050G", "A1242G", "T1275C", "C1464T", "C1995T", "C2139T", "A2211G", "T2391C", "C2787T", "G3060T", "C3213T", "C3485T", "A3645C"]}}, "children": [{"name": "NODE_0000065", "node_attrs": {"div": 0.187937, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C441T", "T456C", "G468A", "C489A", "A582G", "G855A", "A1035C", "G1209A", "T1236C", "A1395G", "C1515T", "A1794G", "G1854A", "T2100C", "G2625A", "G2628A", "T2676C", "A2788G", "C2829T", "A2988G", "C3484T", "T3544C", "C3582T"], "GPC": ["L328F", "I913V"], "Gc": ["I262V"], "Gn": ["L328F"]}, "labels": {"aa": "GPC: L328F, I913V; Gc: I262V; Gn: L328F"}}, "children": [{"name": "PP_006VZ6S|NRC-5/18_06/01/2018|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.194171, "strain": {"value": "PP_006VZ6S|NRC-5/18_06/01/2018|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ6S", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ6S.1", "url": "https://pathoplexus.org/seq/PP_006VZ6S.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258193.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258193.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3650}}, "branch_attrs": {"mutations": {"nuc": ["T90C", "C679T", "C841T", "A864G", "G927A", "C1029T", "C1047T", "C1055T", "A1155G", "T1308G", "T1365C", "C1536T", "T1593G", "A1683G", "A1788G", "T1950G", "G1953A", "G1954A", "A2664T", "A2715G", "G2781A", "C3645A"], "GPC": ["A335V", "I579M", "V635I"], "Gn": ["A335V", "I579M", "V635I"]}, "labels": {"aa": "GPC: A335V, I579M, V635I; Gn: A335V, I579M, V635I"}}}, {"name": "PP_006VP2A|AH-1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.191131, "strain": {"value": "PP_006VP2A|AH-1|nan/XXXX-XX-XX"}, "accession": "PP_006VP2A", "author": {"author": "Padula, P. J.; Sanchez, A. J.; Edelstein, A.; Nichol, S. T.", "value": "Padula, P. J.; Sanchez, A. J.; Edelstein, A.; Nichol, S. T."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2001-03-01"}, "PPX_accession": {"value": "PP_006VP2A.1", "url": "https://pathoplexus.org/seq/PP_006VP2A.1"}, "abbr_authors": {"value": "Padula et al."}, "INSDC_accession": {"value": "AF324901.2", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF324901.2"}, "institution": {"value": "Instituto Nacional de Enfermedades Infecciosas, A.N.L.I.S. Dr. Carlos G. Malbran, Departamento de Virologia"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3668}}, "branch_attrs": {"mutations": {"nuc": ["G264A", "G360A", "G893T", "G993A", "C1001T", "A1269G", "T1594C", "T1662C", "A2022G", "A2283G", "A2469G", "C3591T"], "GPC": ["R281I", "T317I"], "Gn": ["R281I", "T317I"]}, "labels": {"aa": "GPC: R281I, T317I; Gn: R281I, T317I"}}}]}, {"name": "NODE_0000066", "node_attrs": {"div": 0.190292, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T243C", "T408C", "A522T", "A645G", "G771A", "G774A", "G936A", "T1038A", "C1150T", "C1257T", "A1359G", "G1692A", "G1728A", "T1899C", "C1905T", "A1938G", "G1953A", "G1971A", "C2014T", "T2052C", "G2124A", "T2241C", "C2419T", "C2463T", "A2844G", "G3145A", "G3435A", "C3470T", "C3486T"], "GPC": ["V1032I"], "Gc": ["V381I"]}, "labels": {"aa": "GPC: V1032I; Gc: V381I"}}, "children": [{"name": "PP_006VWNW|LS-CH2016|Switzerland/2016-12-23", "node_attrs": {"div": 0.190585, "strain": {"value": "PP_006VWNW|LS-CH2016|Switzerland/2016-12-23"}, "accession": "PP_006VWNW", "author": {"author": "Beuret, C. M.; Siegrist, D.", "value": "Beuret, C. M.; Siegrist, D."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Switzerland"}, "date": {"value": "2016-12-23"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-01-31"}, "PPX_accession": {"value": "PP_006VWNW.1", "url": "https://pathoplexus.org/seq/PP_006VWNW.1"}, "abbr_authors": {"value": "Beuret et al."}, "INSDC_accession": {"value": "KY604962.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/KY604962.1"}, "institution": {"value": "Spiez Laboratory, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "Europe"}, "host": {"value": "human"}, "length": {"value": 3668}}, "branch_attrs": {"mutations": {"nuc": ["A44T", "A309G", "T3606C"]}}}, {"name": "NODE_0000067", "node_attrs": {"div": 0.190584, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T801C"]}}, "children": [{"name": "PP_006W0X6|ANDV-CH-LS-2016|Switzerland/2016-XX-XX", "node_attrs": {"div": 0.190586, "strain": {"value": "PP_006W0X6|ANDV-CH-LS-2016|Switzerland/2016-XX-XX"}, "accession": "PP_006W0X6", "author": {"author": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N.", "value": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Switzerland"}, "date": {"value": "2016-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-02"}, "PPX_accession": {"value": "PP_006W0X6.1", "url": "https://pathoplexus.org/seq/PP_006W0X6.1"}, "abbr_authors": {"value": "Zuest et al."}, "INSDC_accession": {"value": "OR405524.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR405524.1"}, "institution": {"value": "Spiez Laboratory, Biology Department"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "Europe"}, "host": {"value": "human"}, "length": {"value": 3606}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0W8|ANDV-CH-LS-2022|Switzerland/2022-XX-XX", "node_attrs": {"div": 0.191172, "strain": {"value": "PP_006W0W8|ANDV-CH-LS-2022|Switzerland/2022-XX-XX"}, "accession": "PP_006W0W8", "author": {"author": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N.", "value": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Switzerland"}, "date": {"value": "2022-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-02"}, "PPX_accession": {"value": "PP_006W0W8.1", "url": "https://pathoplexus.org/seq/PP_006W0W8.1"}, "abbr_authors": {"value": "Zuest et al."}, "INSDC_accession": {"value": "OR405521.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR405521.1"}, "institution": {"value": "Spiez Laboratory, Biology Department"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "Europe"}, "host": {"value": "human"}, "length": {"value": 3425}}, "branch_attrs": {"mutations": {"nuc": ["G844A", "A2279G"], "GPC": ["E265K", "Q743R"], "Gc": ["Q92R"], "Gn": ["E265K"]}, "labels": {"aa": "GPC: E265K, Q743R; Gc: Q92R; Gn: E265K"}}}]}]}]}]}]}, {"name": "NODE_0000068", "node_attrs": {"div": 0.177513, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C315T", "A381G", "A391G", "T414C", "C489T", "A645G", "G714A", "C849T", "C1515A", "G1596A", "C1905T", "A2622G", "T2898C", "C2964T", "A3117G", "C3210T", "T3214A", "G3430A"], "GPC": ["I114V", "S1055A", "V1127I"], "Gc": ["S404A", "V476I"], "Gn": ["I114V"]}, "labels": {"aa": "GPC: I114V, S1055A, V1127I; Gc: S404A, V476I; Gn: I114V"}}, "children": [{"name": "NODE_0000069", "node_attrs": {"div": 0.185684, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G45A", "T90C", "T312C", "A339C", "A393G", "G507A", "T987C", "G1122A", "A1395G", "T1440C", "A1476G", "T1521C", "G1626A", "G1692A", "T1791C", "A1797G", "G1857A", "T1989C", "G2193A", "A2325G", "G2550A", "C2649T", "A2760T", "T2784C", "G2871A", "A2931G", "G3162A", "C3213T", "A3315C", "T3571G"], "GPC": ["A1055T"], "Gc": ["A404T"]}, "labels": {"aa": "GPC: A1055T; Gc: A404T"}}, "children": [{"name": "NODE_0000070", "node_attrs": {"div": 0.190083, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C363T", "T372C", "C454T", "G628A", "C643T", "G1209A", "G1338A", "A1359G", "C1488A", "C1644T", "C1668T", "G1968A", "A2727T", "A2913G", "G3493T", "T3496C"], "GPC": ["A193T"], "Gn": ["A193T"]}, "labels": {"aa": "GPC: A193T; Gn: A193T"}}, "children": [{"name": "PP_006VZ5U|NRC-4/18_06/01/2018|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.190376, "strain": {"value": "PP_006VZ5U|NRC-4/18_06/01/2018|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ5U", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ5U.1", "url": "https://pathoplexus.org/seq/PP_006VZ5U.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258192.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258192.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3658}}, "branch_attrs": {"mutations": {"nuc": ["A3031G"], "GPC": ["T994A"], "Gc": ["T343A"]}, "labels": {"aa": "GPC: T994A; Gc: T343A"}}}, {"name": "PP_006VZ4W|NRC-3/18_06/01/1997|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.190085, "strain": {"value": "PP_006VZ4W|NRC-3/18_06/01/1997|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ4W", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ4W.1", "url": "https://pathoplexus.org/seq/PP_006VZ4W.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258191.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258191.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3655}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000071", "node_attrs": {"div": 0.19129, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {"nuc": ["A651G", "T663C", "T675C", "G1071A", "C1150T", "G1164A", "G1167A", "G1230A", "C1598T", "A1764G", "C2286T", "T2412C", "C2419T", "A2541G", "C2614T", "T2697C", "A2925G", "A3075G", "T3156A", "C3426T", "C3477T", "T3483C", "A3497G", "T3500C"], "GPC": ["T516I"], "Gn": ["T516I"]}, "labels": {"aa": "GPC: T516I; Gn: T516I", "outbreak": "2026-Hondius"}}, "children": [{"name": "NODE_0000072", "node_attrs": {"div": 0.191292, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W6RC|PP_006W6RC|Netherlands/2026-05-03", "node_attrs": {"div": 0.191294, "strain": {"value": "PP_006W6RC|PP_006W6RC|Netherlands/2026-05-03"}, "accession": "PP_006W6RC", "author": {"author": "Diagne, Moussa Moise; Sankhe, Safietou; Ndiaye, Ndeye Awa; Kane, Mouhamed; Diop, Seynabou M. B. S.; Seye, Seynabou; Fall, Gamou", "value": "Diagne, Moussa Moise; Sankhe, Safietou; Ndiaye, Ndeye Awa; Kane, Mouhamed; Diop, Seynabou M. B. S.; Seye, Seynabou; Fall, Gamou"}, "outbreak": {"value": "2026-Hondius"}, "country": {"value": "Netherlands"}, "date": {"value": "2026-05-03"}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-11"}, "PPX_accession": {"value": "PP_006W6RC.2", "url": "https://pathoplexus.org/seq/PP_006W6RC.2"}, "abbr_authors": {"value": "Diagne et al."}, "institution": {"value": "Institut Pasteur de Dakar"}, "restrictedUntil": {"value": "2027-05-11"}, "region": {"value": "Europe"}, "host": {"value": "human"}, "length": {"value": 3633}}, "branch_attrs": {"mutations": {"nuc": ["C3500T"]}}}, {"name": "PP_006WBLH|ANDV/Switzerland/Hu-3337/2026|Switzerland/2026-05-04", "node_attrs": {"div": 0.191294, "strain": {"value": "PP_006WBLH|ANDV/Switzerland/Hu-3337/2026|Switzerland/2026-05-04"}, "accession": "PP_006WBLH", "author": {"author": "Bloemberg, G.; Chudzinski, V.; Cordey, S.; Huber, M.; Laubscher, F.; Perez-Rodriguez, F.-J.; Pichler, I.; Schibler, M.; Thomasson, V.; Ziltener, G.", "value": "Bloemberg, G.; Chudzinski, V.; Cordey, S.; Huber, M.; Laubscher, F.; Perez-Rodriguez, F.-J.; Pichler, I.; Schibler, M.; Thomasson, V.; Ziltener, G."}, "outbreak": {"value": "2026-Hondius"}, "country": {"value": "Switzerland"}, "date": {"value": "2026-05-04"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-11"}, "PPX_accession": {"value": "PP_006WBLH.1", "url": "https://pathoplexus.org/seq/PP_006WBLH.1"}, "abbr_authors": {"value": "Bloemberg et al."}, "INSDC_accession": {"value": "PZ385162.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PZ385162.1"}, "institution": {"value": "University Hospitals of Geneva, Laboratory of Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "Europe"}, "host": {"value": "human"}, "length": {"value": 3649}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000073", "node_attrs": {"div": 0.19133, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {"nuc": ["A45G", "T46C", "T48C", "A49-", "A50-", "A51-", "A52-", "T3651C"]}}, "children": [{"name": "PP_006WDJK|PP_006WDJK|South Africa/2026-05-02", "node_attrs": {"div": 0.191332, "strain": {"value": "PP_006WDJK|PP_006WDJK|South Africa/2026-05-02"}, "accession": "PP_006WDJK", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "outbreak": {"value": "2026-Hondius"}, "country": {"value": "South Africa"}, "date": {"value": "2026-05-02"}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-12"}, "PPX_accession": {"value": "PP_006WDJK.1", "url": "https://pathoplexus.org/seq/PP_006WDJK.1"}, "abbr_authors": {"value": "Weyer et al."}, "institution": {"value": "National Institute of Communicable Diseases"}, "restrictedUntil": {"value": "2027-05-12"}, "region": {"value": "Africa"}, "host": {"value": "human"}, "length": {"value": 3603}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000074", "node_attrs": {"div": 0.191384, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006WANE|PP_006WANE|South Africa/2026-05-02", "node_attrs": {"div": 0.191387, "strain": {"value": "PP_006WANE|PP_006WANE|South Africa/2026-05-02"}, "accession": "PP_006WANE", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "outbreak": {"value": "2026-Hondius"}, "country": {"value": "South Africa"}, "date": {"value": "2026-05-02"}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-11"}, "PPX_accession": {"value": "PP_006WANE.2", "url": "https://pathoplexus.org/seq/PP_006WANE.2"}, "abbr_authors": {"value": "Weyer et al."}, "institution": {"value": "National Institute of Communicable Diseases"}, "restrictedUntil": {"value": "2027-05-11"}, "region": {"value": "Africa"}, "host": {"value": "human"}, "length": {"value": 3603}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000075", "node_attrs": {"div": 0.191491, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {"nuc": ["G45A", "C46T", "C48T", "-49A", "-50A", "-52G"], "GPC": ["M1V"], "Gn": ["M1V"]}, "labels": {"aa": "GPC: M1V; Gn: M1V"}}, "children": [{"name": "PP_006WDKH|PP_006WDKH|South Africa/2026-04-26", "node_attrs": {"div": 0.191582, "strain": {"value": "PP_006WDKH|PP_006WDKH|South Africa/2026-04-26"}, "accession": "PP_006WDKH", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "outbreak": {"value": "2026-Hondius"}, "country": {"value": "South Africa"}, "date": {"value": "2026-04-26"}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-12"}, "PPX_accession": {"value": "PP_006WDKH.1", "url": "https://pathoplexus.org/seq/PP_006WDKH.1"}, "abbr_authors": {"value": "Weyer et al."}, "institution": {"value": "National Institute of Communicable Diseases"}, "restrictedUntil": {"value": "2027-05-12"}, "region": {"value": "Africa"}, "host": {"value": "human"}, "length": {"value": 3623}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W3U9|PP_006W3U9|Netherlands/2026-05-06", "node_attrs": {"div": 0.191493, "strain": {"value": "PP_006W3U9|PP_006W3U9|Netherlands/2026-05-06"}, "accession": "PP_006W3U9", "author": {"author": "Oude Munnink, B. B.; Nieuwenhuijsse, D.; van der Boom, S.; Zaeck, L.; Boter, M.; Cassidy, H.; Schuele, L.; Molenkamp, R.; van der Eijk, A.; GeurtsvanKessel, C.; Koopmans, M.", "value": "Oude Munnink, B. B.; Nieuwenhuijsse, D.; van der Boom, S.; Zaeck, L.; Boter, M.; Cassidy, H.; Schuele, L.; Molenkamp, R.; van der Eijk, A.; GeurtsvanKessel, C.; Koopmans, M."}, "outbreak": {"value": "2026-Hondius"}, "country": {"value": "Netherlands"}, "date": {"value": "2026-05-06"}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-10"}, "PPX_accession": {"value": "PP_006W3U9.1", "url": "https://pathoplexus.org/seq/PP_006W3U9.1"}, "abbr_authors": {"value": "Oude Munnink et al."}, "institution": {"value": "ErasmusMC"}, "restrictedUntil": {"value": "2027-05-10"}, "region": {"value": "Europe"}, "host": {"value": "human"}, "length": {"value": 3561}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}, {"name": "NODE_0000076", "node_attrs": {"div": 0.183567, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C285T", "A513G", "T531C", "C570T", "C721T", "A723G", "T912C", "C1257T", "A1719G", "A1785G", "C1827T", "A1938G", "A2094G", "A2142G", "T2163C", "T2697C", "C3123T", "A3150G", "T3159C", "A3214G", "C3477T", "A3482G", "T3490A"]}}, "children": [{"name": "NODE_0000077", "node_attrs": {"div": 0.189437, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C363T", "G564A", "A576G", "G783A", "G900A", "C1014T", "C1197T", "A1311G", "A1737G", "G1878A", "T2028C", "T2172C", "A2469G", "T2598C", "G2895A", "A2913C", "T3030C", "C3042T", "G3054A", "C3213T"]}}, "children": [{"name": "PP_006W2JW|CHI-Hu13724_P1|Chile/2024-07-24", "node_attrs": {"div": 0.189438, "strain": {"value": "PP_006W2JW|CHI-Hu13724_P1|Chile/2024-07-24"}, "accession": "PP_006W2JW", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Chile"}, "date": {"value": "2024-07-24"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "PPX_accession": {"value": "PP_006W2JW.1", "url": "https://pathoplexus.org/seq/PP_006W2JW.1"}, "abbr_authors": {"value": "Barrera et al."}, "INSDC_accession": {"value": "PV808474.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808474.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3664}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000078", "node_attrs": {"div": 0.189438, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2KU|CHI-Hu13724_P2|Chile/2024-07-30", "node_attrs": {"div": 0.189438, "strain": {"value": "PP_006W2KU|CHI-Hu13724_P2|Chile/2024-07-30"}, "accession": "PP_006W2KU", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Chile"}, "date": {"value": "2024-07-30"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "PPX_accession": {"value": "PP_006W2KU.1", "url": "https://pathoplexus.org/seq/PP_006W2KU.1"}, "abbr_authors": {"value": "Barrera et al."}, "INSDC_accession": {"value": "PV808477.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808477.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3659}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000079", "node_attrs": {"div": 0.189438, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2G1|137|Chile/2024-06-27", "node_attrs": {"div": 0.189438, "strain": {"value": "PP_006W2G1|137|Chile/2024-06-27"}, "accession": "PP_006W2G1", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Chile"}, "date": {"value": "2024-06-27"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "PPX_accession": {"value": "PP_006W2G1.1", "url": "https://pathoplexus.org/seq/PP_006W2G1.1"}, "abbr_authors": {"value": "Barrera et al."}, "division": {"value": "Los Rios CL"}, "INSDC_accession": {"value": "PV808468.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808468.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3654}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W2F3|136|Chile/2024-06-27", "node_attrs": {"div": 0.189438, "strain": {"value": "PP_006W2F3|136|Chile/2024-06-27"}, "accession": "PP_006W2F3", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Chile"}, "date": {"value": "2024-06-27"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "PPX_accession": {"value": "PP_006W2F3.1", "url": "https://pathoplexus.org/seq/PP_006W2F3.1"}, "abbr_authors": {"value": "Barrera et al."}, "division": {"value": "Los Rios CL"}, "INSDC_accession": {"value": "PV796317.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV796317.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3657}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000080", "node_attrs": {"div": 0.184456, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G927A", "T1473G", "A2727G"]}}, "children": [{"name": "PP_006W0SG|Andes/ARG_p19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.184748, "strain": {"value": "PP_006W0SG|Andes/ARG_p19|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0SG", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "PPX_accession": {"value": "PP_006W0SG.1", "url": "https://pathoplexus.org/seq/PP_006W0SG.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555727.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555727.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "length": {"value": 3660}}, "branch_attrs": {"mutations": {"nuc": ["T340C"], "GPC": ["S97P"], "Gn": ["S97P"]}, "labels": {"aa": "GPC: S97P; Gn: S97P"}}}, {"name": "NODE_0000081", "node_attrs": {"div": 0.184459, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0PN|Andes/ARG-O.l.444|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.184461, "strain": {"value": "PP_006W0PN|Andes/ARG-O.l.444|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0PN", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "PPX_accession": {"value": "PP_006W0PN.1", "url": "https://pathoplexus.org/seq/PP_006W0PN.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555724.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555724.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "mice and others"}, "length": {"value": 3555}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000082", "node_attrs": {"div": 0.184461, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0TE|Andes/ARG-M.a.|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.184463, "strain": {"value": "PP_006W0TE|Andes/ARG-M.a.|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0TE", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "PPX_accession": {"value": "PP_006W0TE.1", "url": "https://pathoplexus.org/seq/PP_006W0TE.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555729.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555729.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "Syrian golden hamster; Syrian golden hamsters; Syrian hamster; golden hamster"}, "length": {"value": 3651}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000083", "node_attrs": {"div": 0.184463, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0RJ|Andes/ARG_p9|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.184463, "strain": {"value": "PP_006W0RJ|Andes/ARG_p9|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0RJ", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "PPX_accession": {"value": "PP_006W0RJ.1", "url": "https://pathoplexus.org/seq/PP_006W0RJ.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555726.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555726.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "length": {"value": 3661}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0QL|Andes/ARG_p3|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.184463, "strain": {"value": "PP_006W0QL|Andes/ARG_p3|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0QL", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "PPX_accession": {"value": "PP_006W0QL.1", "url": "https://pathoplexus.org/seq/PP_006W0QL.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555725.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555725.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "length": {"value": 3652}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}, {"name": "NODE_0000084", "node_attrs": {"div": 0.181503, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T190C", "T231C", "T243C", "C345T", "C363T", "T447C", "C570T", "T675C", "G681T", "G720A", "G900A", "A918G", "G936A", "C1032T", "G1071A", "C1197T", "G1206A", "G1209A", "C1251A", "C1266T", "A1300C", "A1302T", "C1353T", "A1491G", "C1539T", "A1563C", "A1581G", "G1671A", "C1755T", "T2077C", "A2085G", "T2115C", "C2121T", "G2205A", "A2217G", "A2325G", "G2388A", "A2433G", "A2502T", "G2550A", "G2628A", "C2634T", "C2733T", "T2910C", "G3060A", "T3093A", "T3180C", "C3273T", "C3333T", "C3433T", "C3438T"]}}, "children": [{"name": "PP_006W0AF|ARCH14/NRC1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.200966, "strain": {"value": "PP_006W0AF|ARCH14/NRC1|nan/XXXX-XX-XX"}, "accession": "PP_006W0AF", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "PPX_accession": {"value": "PP_006W0AF.1", "url": "https://pathoplexus.org/seq/PP_006W0AF.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850091.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850091.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3643}}, "branch_attrs": {"mutations": {"nuc": ["G45A", "C111T", "A132G", "G153A", "T219A", "C288A", "A366G", "C454T", "C493T", "A582G", "T597C", "C660T", "C678T", "G714A", "T804C", "A948G", "T951G", "C1134T", "T1263C", "T1356C", "A1359G", "C1365T", "T1422C", "A1494G", "A1569G", "C1585T", "T1620C", "T1635C", "A1731G", "C1827T", "G1881A", "A1893G", "A1932G", "G1971A", "C1995T", "T2091C", "G2157A", "C2316T", "A2343G", "T2358C", "T2364G", "C2367T", "A2373G", "C2419T", "A2479C", "T2610C", "C2631T", "C2685T", "A2727G", "T2775C", "T2793A", "C2916T", "C2964T", "C3038A", "A3075G", "G3081A", "T3102C", "G3147C", "G3177A", "A3189G", "T3198C", "T3222C", "C3330T", "A3363G", "G3369A", "C3411T", "A3501C", "C3532T", "T3544C", "A3547G", "T3549C", "A3556G", "T3563G", "A3567G", "G3569A", "C3582T"], "GPC": ["I810L", "T996N"], "Gc": ["I159L", "T345N"]}, "labels": {"aa": "GPC: I810L, T996N; Gc: I159L, T345N"}}}, {"name": "NODE_0000085", "node_attrs": {"div": 0.206742, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C74T", "A114G", "T174C", "G192A", "G264A", "A339G", "G360A", "C387T", "T394C", "T408C", "C462T", "G468A", "G507A", "C508T", "T525A", "C643T", "A651G", "G747A", "A756G", "A771G", "A786G", "A837G", "C841T", "C870T", "T912C", "G927A", "T931C", "A1087G", "T1109C", "C1224T", "G1317A", "G1374A", "C1468T", "A1470G", "G1503A", "A1560G", "A1599G", "G1660A", "T1695C", "G1728A", "A1749G", "T1758C", "C1770T", "A1863G", "G1878A", "T1914C", "C1924A", "C1929T", "T2028C", "A2040G", "A2079C", "T2145C", "G2151A", "T2215C", "A2235G", "T2391C", "T2412C", "G2430T", "C2463T", "C2478T", "A2535G", "C2553T", "T2574A", "C2580T", "A2640G", "T2697C", "A2718G", "T2745C", "C2754T", "T2868C", "T2883C", "T2937C", "T2977C", "T3030C", "G3118A", "G3162A", "T3168C", "G3219A", "C3223T", "A3240T", "A3252G", "C3261A", "A3450G", "A3474G", "A3482C", "T3496C", "T3515C", "T3516C", "A3645C"], "GPC": ["A8V", "Y294H", "I346V", "I353T", "V537I", "A1023T"], "Gc": ["A372T"], "Gn": ["A8V", "Y294H", "I346V", "I353T", "V537I"]}, "labels": {"aa": "GPC: A8V, Y294H, I346V, I353T, V537I, A1023T; Gc: A372T; Gn: A8V, Y294H, I346V, I353T, V537I"}}, "children": [{"name": "NODE_0000086", "node_attrs": {"div": 0.207328, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C2539T", "A3265G"], "GPC": ["P830S", "N1072D"], "Gc": ["P179S", "N421D"]}, "labels": {"aa": "GPC: P830S, N1072D; Gc: P179S, N421D"}}, "children": [{"name": "PP_006VYY8|ANDV/Oligoryzomys longicaudatus/CHL/9717869_08/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207621, "strain": {"value": "PP_006VYY8|ANDV/Oligoryzomys longicaudatus/CHL/9717869_08/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYY8", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYY8.1", "url": "https://pathoplexus.org/seq/PP_006VYY8.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095819.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095819.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["G69A"]}}}, {"name": "NODE_0000087", "node_attrs": {"div": 0.20733, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYJ2|ANDV/Oligoryzomys longicaudatus/CHL/9717869_09/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207332, "strain": {"value": "PP_006VYJ2|ANDV/Oligoryzomys longicaudatus/CHL/9717869_09/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYJ2", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYJ2.1", "url": "https://pathoplexus.org/seq/PP_006VYJ2.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095805.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095805.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VYPS|ANDV/Oligoryzomys longicaudatus/CHL/9717869_07/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207332, "strain": {"value": "PP_006VYPS|ANDV/Oligoryzomys longicaudatus/CHL/9717869_07/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYPS", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYPS.1", "url": "https://pathoplexus.org/seq/PP_006VYPS.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095810.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095810.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000088", "node_attrs": {"div": 0.206744, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000089", "node_attrs": {"div": 0.206745, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VVUK|PP_006VVUK|nan/XXXX-XX-XX", "node_attrs": {"div": 0.206746, "strain": {"value": "PP_006VVUK|PP_006VVUK|nan/XXXX-XX-XX"}, "accession": "PP_006VVUK", "author": {"author": "Nguyen, S. H.; Pichuantes, S.", "value": "Nguyen, S. H.; Pichuantes, S."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2013-02-13"}, "PPX_accession": {"value": "PP_006VVUK.1", "url": "https://pathoplexus.org/seq/PP_006VVUK.1"}, "abbr_authors": {"value": "Nguyen et al."}, "INSDC_accession": {"value": "HV984408.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/HV984408.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3671}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000090", "node_attrs": {"div": 0.206746, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0E7|Chile-9717869|nan/XXXX-XX-XX", "node_attrs": {"div": 0.206746, "strain": {"value": "PP_006W0E7|Chile-9717869|nan/XXXX-XX-XX"}, "accession": "PP_006W0E7", "author": {"author": "Bohlman, M. C.; Borucki, M.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; St Jeor, S.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B.", "value": "Bohlman, M. C.; Borucki, M.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; St Jeor, S.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2000-10-10"}, "PPX_accession": {"value": "PP_006W0E7.1", "url": "https://pathoplexus.org/seq/PP_006W0E7.1"}, "abbr_authors": {"value": "Bohlman et al."}, "INSDC_accession": {"value": "NC_003467.2", "url": "https://www.ncbi.nlm.nih.gov/nuccore/NC_003467.2"}, "institution": {"value": "National Center for Biotechnology Information, NIH"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3671}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000091", "node_attrs": {"div": 0.206746, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VQN2|PP_006VQN2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.206746, "strain": {"value": "PP_006VQN2|PP_006VQN2|nan/XXXX-XX-XX"}, "accession": "PP_006VQN2", "author": {"author": "Pichuantesu, S.; Nguyen, S. H.", "value": "Pichuantesu, S.; Nguyen, S. H."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2008-09-26"}, "PPX_accession": {"value": "PP_006VQN2.1", "url": "https://pathoplexus.org/seq/PP_006VQN2.1"}, "abbr_authors": {"value": "Pichuantesu et al."}, "INSDC_accession": {"value": "DL139691.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/DL139691.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3671}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000092", "node_attrs": {"div": 0.206746, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0D9|Chile-9717869|Chile/1997-XX-XX", "node_attrs": {"div": 0.206746, "strain": {"value": "PP_006W0D9|Chile-9717869|Chile/1997-XX-XX"}, "accession": "PP_006W0D9", "author": {"author": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D.", "value": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Chile"}, "date": {"value": "1997-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2021-02-27"}, "PPX_accession": {"value": "PP_006W0D9.1", "url": "https://pathoplexus.org/seq/PP_006W0D9.1"}, "abbr_authors": {"value": "Warner et al."}, "INSDC_accession": {"value": "MT956623.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MT956623.1"}, "institution": {"value": "Public Health Agency of Canada, Special Pathogens"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "mice and others"}, "length": {"value": 3671}}, "branch_attrs": {"mutations": {"nuc": ["C3645A", "C3662T", "A3671T"]}}}, {"name": "NODE_0000093", "node_attrs": {"div": 0.206746, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VQYG|PP_006VQYG|nan/XXXX-XX-XX", "node_attrs": {"div": 0.206746, "strain": {"value": "PP_006VQYG|PP_006VQYG|nan/XXXX-XX-XX"}, "accession": "PP_006VQYG", "author": {"author": "Nguyen, S. H.; Pichuantes, S.", "value": "Nguyen, S. H.; Pichuantes, S."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2008-02-21"}, "PPX_accession": {"value": "PP_006VQYG.1", "url": "https://pathoplexus.org/seq/PP_006VQYG.1"}, "abbr_authors": {"value": "Nguyen et al."}, "INSDC_accession": {"value": "DI161196.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/DI161196.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3671}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VNZG|Chile-9717869|nan/XXXX-XX-XX", "node_attrs": {"div": 0.206746, "strain": {"value": "PP_006VNZG|Chile-9717869|nan/XXXX-XX-XX"}, "accession": "PP_006VNZG", "author": {"author": "Bohlman, M. C.; Borucki, M. K.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; Rowe, J. E.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B.", "value": "Bohlman, M. C.; Borucki, M. K.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; Rowe, J. E.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2000-10-10"}, "PPX_accession": {"value": "PP_006VNZG.1", "url": "https://pathoplexus.org/seq/PP_006VNZG.1"}, "abbr_authors": {"value": "Bohlman et al."}, "INSDC_accession": {"value": "AF291703.2", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF291703.2"}, "institution": {"value": "University of Nevada-Reno, Microbiology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3671}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}, {"name": "NODE_0000094", "node_attrs": {"div": 0.206747, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000095", "node_attrs": {"div": 0.206749, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000096", "node_attrs": {"div": 0.207041, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C2543A"], "GPC": ["S831Y"], "Gc": ["S180Y"]}, "labels": {"aa": "GPC: S831Y; Gc: S180Y"}}, "children": [{"name": "PP_006VYK0|ANDV/Oligoryzomys longicaudatus/CHL/9717869_06/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207627, "strain": {"value": "PP_006VYK0|ANDV/Oligoryzomys longicaudatus/CHL/9717869_06/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYK0", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYK0.1", "url": "https://pathoplexus.org/seq/PP_006VYK0.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095806.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095806.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["C1097A", "A1834G"], "GPC": ["S349Y", "K595E"], "Gn": ["S349Y", "K595E"]}, "labels": {"aa": "GPC: S349Y, K595E; Gn: S349Y, K595E"}}}, {"name": "NODE_0000097", "node_attrs": {"div": 0.207334, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A828G"]}}, "children": [{"name": "PP_006VYXA|ANDV/Oligoryzomys longicaudatus/CHL/9717869_05/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207335, "strain": {"value": "PP_006VYXA|ANDV/Oligoryzomys longicaudatus/CHL/9717869_05/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYXA", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYXA.1", "url": "https://pathoplexus.org/seq/PP_006VYXA.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095818.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095818.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VYTJ|ANDV/Oligoryzomys longicaudatus/CHL/9717869_04/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207335, "strain": {"value": "PP_006VYTJ|ANDV/Oligoryzomys longicaudatus/CHL/9717869_04/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYTJ", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYTJ.1", "url": "https://pathoplexus.org/seq/PP_006VYTJ.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095814.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095814.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3418}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000098", "node_attrs": {"div": 0.206751, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000099", "node_attrs": {"div": 0.207043, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A725G"], "GPC": ["K225R"], "Gn": ["K225R"]}, "labels": {"aa": "GPC: K225R; Gn: K225R"}}, "children": [{"name": "PP_006VYG7|ANDV/Oligoryzomys longicaudatus/CHL/9717869_13/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207336, "strain": {"value": "PP_006VYG7|ANDV/Oligoryzomys longicaudatus/CHL/9717869_13/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYG7", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYG7.1", "url": "https://pathoplexus.org/seq/PP_006VYG7.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095803.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095803.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3418}}, "branch_attrs": {"mutations": {"nuc": ["G1165A"], "GPC": ["E372K"], "Gn": ["E372K"]}, "labels": {"aa": "GPC: E372K; Gn: E372K"}}}, {"name": "NODE_0000100", "node_attrs": {"div": 0.207046, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYDD|ANDV/Oligoryzomys longicaudatus/CHL/9717869_15/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207338, "strain": {"value": "PP_006VYDD|ANDV/Oligoryzomys longicaudatus/CHL/9717869_15/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYDD", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYDD.1", "url": "https://pathoplexus.org/seq/PP_006VYDD.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095800.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095800.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3418}}, "branch_attrs": {"mutations": {"nuc": ["A1748G"], "GPC": ["Q566R"], "Gn": ["Q566R"]}, "labels": {"aa": "GPC: Q566R; Gn: Q566R"}}}, {"name": "PP_006VYCF|ANDV/Oligoryzomys longicaudatus/CHL/9717869_14/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207924, "strain": {"value": "PP_006VYCF|ANDV/Oligoryzomys longicaudatus/CHL/9717869_14/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYCF", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYCF.1", "url": "https://pathoplexus.org/seq/PP_006VYCF.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095799.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095799.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["A1657G", "A2016G", "A3303G"], "GPC": ["K536E"], "Gn": ["K536E"]}, "labels": {"aa": "GPC: K536E; Gn: K536E"}}}]}]}, {"name": "NODE_0000101", "node_attrs": {"div": 0.207337, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C375A", "T1666G"], "GPC": ["N108K", "Y539D"], "Gn": ["N108K", "Y539D"]}, "labels": {"aa": "GPC: N108K, Y539D; Gn: N108K, Y539D"}}, "children": [{"name": "PP_006VXZ7|ANDV/Oligoryzomys longicaudatus/CHL/9717869_02/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207338, "strain": {"value": "PP_006VXZ7|ANDV/Oligoryzomys longicaudatus/CHL/9717869_02/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXZ7", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VXZ7.1", "url": "https://pathoplexus.org/seq/PP_006VXZ7.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513888.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513888.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000102", "node_attrs": {"div": 0.207338, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VY8P|ANDV/Oligoryzomys longicaudatus/CHL/9717869_03/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207338, "strain": {"value": "PP_006VY8P|ANDV/Oligoryzomys longicaudatus/CHL/9717869_03/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY8P", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY8P.1", "url": "https://pathoplexus.org/seq/PP_006VY8P.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513897.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513897.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VXTK|ANDV/Oligoryzomys longicaudatus/CHL/9717869_01/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207338, "strain": {"value": "PP_006VXTK|ANDV/Oligoryzomys longicaudatus/CHL/9717869_01/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXTK", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXTK.1", "url": "https://pathoplexus.org/seq/PP_006VXTK.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK059788.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059788.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3418}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000103", "node_attrs": {"div": 0.206749, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYEB|ANDV/Oligoryzomys longicaudatus/CHL/9717869_01/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.20675, "strain": {"value": "PP_006VYEB|ANDV/Oligoryzomys longicaudatus/CHL/9717869_01/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYEB", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYEB.1", "url": "https://pathoplexus.org/seq/PP_006VYEB.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095801.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095801.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000104", "node_attrs": {"div": 0.206751, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000105", "node_attrs": {"div": 0.206753, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ04|ANDV/Oligoryzomys longicaudatus/CHL/9717869_03/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207046, "strain": {"value": "PP_006VZ04|ANDV/Oligoryzomys longicaudatus/CHL/9717869_03/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VZ04", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VZ04.1", "url": "https://pathoplexus.org/seq/PP_006VZ04.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095821.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095821.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["G1223T"], "GPC": ["S391I"], "Gn": ["S391I"]}, "labels": {"aa": "GPC: S391I; Gn: S391I"}}}, {"name": "NODE_0000106", "node_attrs": {"div": 0.207046, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T1646C"], "GPC": ["L532P"], "Gn": ["L532P"]}, "labels": {"aa": "GPC: L532P; Gn: L532P"}}, "children": [{"name": "PP_006VXPT|ANDV/Oligoryzomys longicaudatus/CHL/9717869_16/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207047, "strain": {"value": "PP_006VXPT|ANDV/Oligoryzomys longicaudatus/CHL/9717869_16/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXPT", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXPT.1", "url": "https://pathoplexus.org/seq/PP_006VXPT.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK059784.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059784.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000107", "node_attrs": {"div": 0.207047, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VY7R|ANDV/Oligoryzomys longicaudatus/CHL/9717869_37/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207047, "strain": {"value": "PP_006VY7R|ANDV/Oligoryzomys longicaudatus/CHL/9717869_37/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY7R", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY7R.1", "url": "https://pathoplexus.org/seq/PP_006VY7R.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513896.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513896.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000108", "node_attrs": {"div": 0.207047, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VY6T|ANDV/Oligoryzomys longicaudatus/CHL/9717869_17/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207047, "strain": {"value": "PP_006VY6T|ANDV/Oligoryzomys longicaudatus/CHL/9717869_17/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY6T", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY6T.1", "url": "https://pathoplexus.org/seq/PP_006VY6T.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513895.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513895.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000109", "node_attrs": {"div": 0.207047, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYAK|ANDV/Oligoryzomys longicaudatus/CHL/9717869_38/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207047, "strain": {"value": "PP_006VYAK|ANDV/Oligoryzomys longicaudatus/CHL/9717869_38/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYAK", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VYAK.1", "url": "https://pathoplexus.org/seq/PP_006VYAK.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513899.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513899.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VY05|ANDV/Oligoryzomys longicaudatus/CHL/9717869_18/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207047, "strain": {"value": "PP_006VY05|ANDV/Oligoryzomys longicaudatus/CHL/9717869_18/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY05", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY05.1", "url": "https://pathoplexus.org/seq/PP_006VY05.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513889.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513889.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}, {"name": "NODE_0000110", "node_attrs": {"div": 0.206754, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000111", "node_attrs": {"div": 0.207047, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A413G"], "GPC": ["D121G"], "Gn": ["D121G"]}, "labels": {"aa": "GPC: D121G; Gn: D121G"}}, "children": [{"name": "PP_006VXSM|ANDV/Oligoryzomys longicaudatus/CHL/9717869_09/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207633, "strain": {"value": "PP_006VXSM|ANDV/Oligoryzomys longicaudatus/CHL/9717869_09/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXSM", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXSM.1", "url": "https://pathoplexus.org/seq/PP_006VXSM.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK059787.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059787.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["T1603C", "A3445T"], "GPC": ["S518P", "R1132*"], "Gc": ["R481*"], "Gn": ["S518P"]}, "labels": {"aa": "GPC: S518P, R1132*; Gc: R481*; Gn: S518P"}}}, {"name": "NODE_0000112", "node_attrs": {"div": 0.207049, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VY21|ANDV/Oligoryzomys longicaudatus/CHL/9717869_07/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207052, "strain": {"value": "PP_006VY21|ANDV/Oligoryzomys longicaudatus/CHL/9717869_07/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY21", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY21.1", "url": "https://pathoplexus.org/seq/PP_006VY21.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513891.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513891.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VXVF|ANDV/Oligoryzomys longicaudatus/CHL/9717869_08/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207341, "strain": {"value": "PP_006VXVF|ANDV/Oligoryzomys longicaudatus/CHL/9717869_08/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXVF", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXVF.1", "url": "https://pathoplexus.org/seq/PP_006VXVF.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK059790.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059790.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["T1752G"], "GPC": ["S567R"], "Gn": ["S567R"]}, "labels": {"aa": "GPC: S567R; Gn: S567R"}}}]}]}, {"name": "NODE_0000113", "node_attrs": {"div": 0.206756, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000114", "node_attrs": {"div": 0.207342, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A2866G", "G3437T"], "GPC": ["N939D", "C1129F"], "Gc": ["N288D", "C478F"]}, "labels": {"aa": "GPC: N939D, C1129F; Gc: N288D, C478F"}}, "children": [{"name": "NODE_0000115", "node_attrs": {"div": 0.207635, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A738G"]}}, "children": [{"name": "PP_006VZ12|ANDV/Oligoryzomys longicaudatus/CHL/9717869_21/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.20822, "strain": {"value": "PP_006VZ12|ANDV/Oligoryzomys longicaudatus/CHL/9717869_21/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VZ12", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VZ12.1", "url": "https://pathoplexus.org/seq/PP_006VZ12.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095822.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095822.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["A2446G", "T2452A"], "GPC": ["I799V", "S801T"], "Gc": ["I148V", "S150T"]}, "labels": {"aa": "GPC: I799V, S801T; Gc: I148V, S150T"}}}, {"name": "PP_006VYZ6|ANDV/Oligoryzomys longicaudatus/CHL/9717869_19/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207637, "strain": {"value": "PP_006VYZ6|ANDV/Oligoryzomys longicaudatus/CHL/9717869_19/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYZ6", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYZ6.1", "url": "https://pathoplexus.org/seq/PP_006VYZ6.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095820.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095820.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000116", "node_attrs": {"div": 0.207344, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYNU|ANDV/Oligoryzomys longicaudatus/CHL/9717869_20/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207636, "strain": {"value": "PP_006VYNU|ANDV/Oligoryzomys longicaudatus/CHL/9717869_20/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYNU", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYNU.1", "url": "https://pathoplexus.org/seq/PP_006VYNU.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095809.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095809.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["G2708A"], "GPC": ["R886K"], "Gc": ["R235K"]}, "labels": {"aa": "GPC: R886K; Gc: R235K"}}}, {"name": "NODE_0000117", "node_attrs": {"div": 0.207637, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A2698C"], "GPC": ["S883R"], "Gc": ["S232R"]}, "labels": {"aa": "GPC: S883R; Gc: S232R"}}, "children": [{"name": "PP_006VYWC|ANDV/Oligoryzomys longicaudatus/CHL/9717869_16/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.20764, "strain": {"value": "PP_006VYWC|ANDV/Oligoryzomys longicaudatus/CHL/9717869_16/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYWC", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYWC.1", "url": "https://pathoplexus.org/seq/PP_006VYWC.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095817.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095817.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000118", "node_attrs": {"div": 0.207639, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYUG|ANDV/Oligoryzomys longicaudatus/CHL/9717869_18/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207932, "strain": {"value": "PP_006VYUG|ANDV/Oligoryzomys longicaudatus/CHL/9717869_18/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYUG", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYUG.1", "url": "https://pathoplexus.org/seq/PP_006VYUG.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095815.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095815.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["G439A"], "GPC": ["V130I"], "Gn": ["V130I"]}, "labels": {"aa": "GPC: V130I; Gn: V130I"}}}, {"name": "PP_006VYF9|ANDV/Oligoryzomys longicaudatus/CHL/9717869_17/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207932, "strain": {"value": "PP_006VYF9|ANDV/Oligoryzomys longicaudatus/CHL/9717869_17/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYF9", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYF9.1", "url": "https://pathoplexus.org/seq/PP_006VYF9.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095802.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095802.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["G1207A"], "GPC": ["A386T"], "Gn": ["A386T"]}, "labels": {"aa": "GPC: A386T; Gn: A386T"}}}]}]}]}]}, {"name": "NODE_0000119", "node_attrs": {"div": 0.207049, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T825C"]}}, "children": [{"name": "NODE_0000120", "node_attrs": {"div": 0.207634, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G2699T", "A2866G"], "GPC": ["S883I", "N939D"], "Gc": ["S232I", "N288D"]}, "labels": {"aa": "GPC: S883I, N939D; Gc: S232I, N288D"}}, "children": [{"name": "PP_006VYLY|ANDV/Oligoryzomys longicaudatus/CHL/9717869_24/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207927, "strain": {"value": "PP_006VYLY|ANDV/Oligoryzomys longicaudatus/CHL/9717869_24/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYLY", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYLY.1", "url": "https://pathoplexus.org/seq/PP_006VYLY.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095807.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095807.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["G2935A"], "GPC": ["V962I"], "Gc": ["V311I"]}, "labels": {"aa": "GPC: V962I; Gc: V311I"}}}, {"name": "NODE_0000121", "node_attrs": {"div": 0.207926, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G1682A"], "GPC": ["G544E"], "Gn": ["G544E"]}, "labels": {"aa": "GPC: G544E; Gn: G544E"}}, "children": [{"name": "PP_006VYSL|ANDV/Oligoryzomys longicaudatus/CHL/9717869_23/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207927, "strain": {"value": "PP_006VYSL|ANDV/Oligoryzomys longicaudatus/CHL/9717869_23/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYSL", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYSL.1", "url": "https://pathoplexus.org/seq/PP_006VYSL.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095813.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095813.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VYMW|ANDV/Oligoryzomys longicaudatus/CHL/9717869_22/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207927, "strain": {"value": "PP_006VYMW|ANDV/Oligoryzomys longicaudatus/CHL/9717869_22/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYMW", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYMW.1", "url": "https://pathoplexus.org/seq/PP_006VYMW.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095808.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095808.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000122", "node_attrs": {"div": 0.207052, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYH4|ANDV/Oligoryzomys longicaudatus/CHL/9717869_02/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207054, "strain": {"value": "PP_006VYH4|ANDV/Oligoryzomys longicaudatus/CHL/9717869_02/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYH4", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYH4.1", "url": "https://pathoplexus.org/seq/PP_006VYH4.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095804.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095804.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000123", "node_attrs": {"div": 0.207054, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000124", "node_attrs": {"div": 0.207346, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A413T"], "GPC": ["D121V"], "Gn": ["D121V"]}, "labels": {"aa": "GPC: D121V; Gn: D121V"}}, "children": [{"name": "PP_006VYVE|ANDV/Oligoryzomys longicaudatus/CHL/9717869_10/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207347, "strain": {"value": "PP_006VYVE|ANDV/Oligoryzomys longicaudatus/CHL/9717869_10/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYVE", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYVE.1", "url": "https://pathoplexus.org/seq/PP_006VYVE.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095816.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095816.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3418}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000125", "node_attrs": {"div": 0.207347, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYQQ|ANDV/Oligoryzomys longicaudatus/CHL/9717869_12/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207347, "strain": {"value": "PP_006VYQQ|ANDV/Oligoryzomys longicaudatus/CHL/9717869_12/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYQQ", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYQQ.1", "url": "https://pathoplexus.org/seq/PP_006VYQQ.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095811.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095811.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VYRN|ANDV/Oligoryzomys longicaudatus/CHL/9717869_11/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207347, "strain": {"value": "PP_006VYRN|ANDV/Oligoryzomys longicaudatus/CHL/9717869_11/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYRN", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYRN.1", "url": "https://pathoplexus.org/seq/PP_006VYRN.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095812.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095812.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000126", "node_attrs": {"div": 0.207639, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A1667C", "A1835C"], "GPC": ["Y539S", "K595T"], "Gn": ["Y539S", "K595T"]}, "labels": {"aa": "GPC: Y539S, K595T; Gn: Y539S, K595T"}}, "children": [{"name": "NODE_0000127", "node_attrs": {"div": 0.207931, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G423T"], "GPC": ["K124N"], "Gn": ["K124N"]}, "labels": {"aa": "GPC: K124N; Gn: K124N"}}, "children": [{"name": "PP_006VXRP|ANDV/Oligoryzomys longicaudatus/CHL/9717869_12/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207932, "strain": {"value": "PP_006VXRP|ANDV/Oligoryzomys longicaudatus/CHL/9717869_12/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXRP", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXRP.1", "url": "https://pathoplexus.org/seq/PP_006VXRP.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK059786.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059786.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000128", "node_attrs": {"div": 0.208517, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A1878C", "C2537T"], "GPC": ["K609N", "T829I"], "Gc": ["T178I"], "Gn": ["K609N"]}, "labels": {"aa": "GPC: K609N, T829I; Gc: T178I; Gn: K609N"}}, "children": [{"name": "PP_006VY5V|ANDV/Oligoryzomys longicaudatus/CHL/9717869_45/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208518, "strain": {"value": "PP_006VY5V|ANDV/Oligoryzomys longicaudatus/CHL/9717869_45/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY5V", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY5V.1", "url": "https://pathoplexus.org/seq/PP_006VY5V.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513894.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513894.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000129", "node_attrs": {"div": 0.208518, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VY9M|ANDV/Oligoryzomys longicaudatus/CHL/9717869_44/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208518, "strain": {"value": "PP_006VY9M|ANDV/Oligoryzomys longicaudatus/CHL/9717869_44/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY9M", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY9M.1", "url": "https://pathoplexus.org/seq/PP_006VY9M.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513898.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513898.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VXNV|ANDV/Oligoryzomys longicaudatus/CHL/9717869_10/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208518, "strain": {"value": "PP_006VXNV|ANDV/Oligoryzomys longicaudatus/CHL/9717869_10/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXNV", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXNV.1", "url": "https://pathoplexus.org/seq/PP_006VXNV.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK059783.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059783.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000130", "node_attrs": {"div": 0.207641, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000131", "node_attrs": {"div": 0.20852, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C755A", "G2662T", "A3363C"], "GPC": ["T235K", "A871S", "L1104F"], "Gc": ["A220S", "L453F"], "Gn": ["T235K"]}, "labels": {"aa": "GPC: T235K, A871S, L1104F; Gc: A220S, L453F; Gn: T235K"}}, "children": [{"name": "PP_006VXWD|ANDV/Oligoryzomys longicaudatus/CHL/9717869_05/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208813, "strain": {"value": "PP_006VXWD|ANDV/Oligoryzomys longicaudatus/CHL/9717869_05/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXWD", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VXWD.1", "url": "https://pathoplexus.org/seq/PP_006VXWD.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513885.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513885.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["G3340T"], "GPC": ["G1097C"], "Gc": ["G446C"]}, "labels": {"aa": "GPC: G1097C; Gc: G446C"}}}, {"name": "NODE_0000132", "node_attrs": {"div": 0.208522, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VXXB|ANDV/Oligoryzomys longicaudatus/CHL/9717869_04/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208524, "strain": {"value": "PP_006VXXB|ANDV/Oligoryzomys longicaudatus/CHL/9717869_04/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXXB", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VXXB.1", "url": "https://pathoplexus.org/seq/PP_006VXXB.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513886.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513886.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VXUH|ANDV/Oligoryzomys longicaudatus/CHL/9717869_06/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208525, "strain": {"value": "PP_006VXUH|ANDV/Oligoryzomys longicaudatus/CHL/9717869_06/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXUH", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXUH.1", "url": "https://pathoplexus.org/seq/PP_006VXUH.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK059789.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059789.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000133", "node_attrs": {"div": 0.208227, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C2675T", "G3151A"], "GPC": ["P875L", "V1034I"], "Gc": ["P224L", "V383I"]}, "labels": {"aa": "GPC: P875L, V1034I; Gc: P224L, V383I"}}, "children": [{"name": "PP_006VY3Z|ANDV/Oligoryzomys longicaudatus/CHL/9717869_39/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208813, "strain": {"value": "PP_006VY3Z|ANDV/Oligoryzomys longicaudatus/CHL/9717869_39/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY3Z", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY3Z.1", "url": "https://pathoplexus.org/seq/PP_006VY3Z.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513892.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513892.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["A1697G", "C3338T"], "GPC": ["D549G", "S1096L"], "Gc": ["S445L"], "Gn": ["D549G"]}, "labels": {"aa": "GPC: D549G, S1096L; Gc: S445L; Gn: D549G"}}}, {"name": "NODE_0000134", "node_attrs": {"div": 0.208229, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000135", "node_attrs": {"div": 0.208521, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C2663A"], "GPC": ["A871E"], "Gc": ["A220E"]}, "labels": {"aa": "GPC: A871E; Gc: A220E"}}, "children": [{"name": "PP_006VY4X|ANDV/Oligoryzomys longicaudatus/CHL/9717869_41/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208814, "strain": {"value": "PP_006VY4X|ANDV/Oligoryzomys longicaudatus/CHL/9717869_41/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY4X", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY4X.1", "url": "https://pathoplexus.org/seq/PP_006VY4X.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513893.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513893.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["T246C"]}}}, {"name": "NODE_0000136", "node_attrs": {"div": 0.208523, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYBH|ANDV/Oligoryzomys longicaudatus/CHL/9717869_42/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208525, "strain": {"value": "PP_006VYBH|ANDV/Oligoryzomys longicaudatus/CHL/9717869_42/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYBH", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VYBH.1", "url": "https://pathoplexus.org/seq/PP_006VYBH.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513900.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513900.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VY13|ANDV/Oligoryzomys longicaudatus/CHL/9717869_40/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208525, "strain": {"value": "PP_006VY13|ANDV/Oligoryzomys longicaudatus/CHL/9717869_40/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY13", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY13.1", "url": "https://pathoplexus.org/seq/PP_006VY13.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513890.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513890.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000137", "node_attrs": {"div": 0.208231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VXQR|ANDV/Oligoryzomys longicaudatus/CHL/9717869_13/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208232, "strain": {"value": "PP_006VXQR|ANDV/Oligoryzomys longicaudatus/CHL/9717869_13/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXQR", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXQR.1", "url": "https://pathoplexus.org/seq/PP_006VXQR.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK059785.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059785.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000138", "node_attrs": {"div": 0.208232, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VXY9|ANDV/Oligoryzomys longicaudatus/CHL/9717869_15/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208232, "strain": {"value": "PP_006VXY9|ANDV/Oligoryzomys longicaudatus/CHL/9717869_15/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXY9", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VXY9.1", "url": "https://pathoplexus.org/seq/PP_006VXY9.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513887.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513887.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VXMX|ANDV/Oligoryzomys longicaudatus/CHL/9717869_14/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208232, "strain": {"value": "PP_006VXMX|ANDV/Oligoryzomys longicaudatus/CHL/9717869_14/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXMX", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXMX.1", "url": "https://pathoplexus.org/seq/PP_006VXMX.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK059782.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059782.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3418}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, "root_sequence": {"GPC": "MEGWYLVVLGVCYTLTLAMPKTIYELKMECPHTVGLGQGYIIGSTELGLISIEAASDIKLESSCNFDLHTTSMAQKSFTQVEWRKKSDTTDTTNAASTTFEAQTKTVNLRGTCILAPELYDTLKKVKKTVLCYDLTCNQTHCQPTVYLIAPVLTCMSIRSCMASVFTSRIQVIYEKTHCVTGQLIEGQCFNPAHTLTLSQPAHTYDTVTLPISCFFTPKKSEQLKVIKTFEGILTKTGCTENALQGYYVCFLGSHSEPLIVPSLEDIRSAEVVSRMLVHPRGEDHDAIQNSQSHLRIVGPITAKVPSTSSTDTLKGTAFAGVPMYSSLSTLVRNADPEFVFSPGIVPESNHSTCDKKTVPITWTGYLPISGEMEKVTGCTVFCTLAGPGASCEAYSENGIFNISSPTCLVNKVQRFRGSEQKINFICQRVDQDVVVYCNGQKKVILTKTLVIGQCIYTFTSLFSLMPDVAHSLAVELCVPGLHGWATVMLLSTFCFGWVLIPAVTLIILKCLRVLTFSCSHYTNESKFKFILEKVKIEYQKTMGSMVCDVCHHECETAKELESHRQSCINGQCPYCMTITEATESALQAHYSICKLTGRFQEALKKSLKKPEVKKGCYRTLGVFRYKSRCYVGLVWCLLLTCEIVIWAASAETPLMESGWSDTAHGVGEIPMKTDLELDFSLPSSSSYSYRRKLTNPANKEESIPFHFQMEKQVIHAEIQPLGHWMDATFNIKTAFHCYGACQKYSYPWQTSKCFFEKDYQYETGWGCNPGDCPGVGTGCTACGVYLDKLKSVGKAYKIISLKYTRKVCIQLGTEQTCKHIDANDCLVTPSVKVCIVGTVSKLQPSDTLLFLGPLEQGGIILKQWCTTSCAFGDPGDIMSTPSGMRCPEHTGSFRKICGFATTPVCEYQGNTISGYKRMMATKDSFQSFNLTEPHITTNKLEWIDPDGNTRDHVNLVLNRDVSFQDLSDNPCKVDLHTQAIEGAWGSGVGFTLTCTVGLTECPSFMTSIKACDLAMCYGSTVTNLARGSNTVKVVGKGGHSGSSFKCCHDTDCSSEGLLASAPHLERVTGFNQIDSDKVYDDGAPPCTFKCWFTKSGEWLLGILNGNWIVVVVLVVILILSIIMFSVLCPRRGHKKTV*", "Gc": "ETPLMESGWSDTAHGVGEIPMKTDLELDFSLPSSSSYSYRRKLTNPANKEESIPFHFQMEKQVIHAEIQPLGHWMDATFNIKTAFHCYGACQKYSYPWQTSKCFFEKDYQYETGWGCNPGDCPGVGTGCTACGVYLDKLKSVGKAYKIISLKYTRKVCIQLGTEQTCKHIDANDCLVTPSVKVCIVGTVSKLQPSDTLLFLGPLEQGGIILKQWCTTSCAFGDPGDIMSTPSGMRCPEHTGSFRKICGFATTPVCEYQGNTISGYKRMMATKDSFQSFNLTEPHITTNKLEWIDPDGNTRDHVNLVLNRDVSFQDLSDNPCKVDLHTQAIEGAWGSGVGFTLTCTVGLTECPSFMTSIKACDLAMCYGSTVTNLARGSNTVKVVGKGGHSGSSFKCCHDTDCSSEGLLASAPHLERVTGFNQIDSDKVYDDGAPPCTFKCWFTKSGEWLLGILNGNWIVVVVLVVILILSIIMFSVLCPRRGHKKTV*", "Gn": "MEGWYLVVLGVCYTLTLAMPKTIYELKMECPHTVGLGQGYIIGSTELGLISIEAASDIKLESSCNFDLHTTSMAQKSFTQVEWRKKSDTTDTTNAASTTFEAQTKTVNLRGTCILAPELYDTLKKVKKTVLCYDLTCNQTHCQPTVYLIAPVLTCMSIRSCMASVFTSRIQVIYEKTHCVTGQLIEGQCFNPAHTLTLSQPAHTYDTVTLPISCFFTPKKSEQLKVIKTFEGILTKTGCTENALQGYYVCFLGSHSEPLIVPSLEDIRSAEVVSRMLVHPRGEDHDAIQNSQSHLRIVGPITAKVPSTSSTDTLKGTAFAGVPMYSSLSTLVRNADPEFVFSPGIVPESNHSTCDKKTVPITWTGYLPISGEMEKVTGCTVFCTLAGPGASCEAYSENGIFNISSPTCLVNKVQRFRGSEQKINFICQRVDQDVVVYCNGQKKVILTKTLVIGQCIYTFTSLFSLMPDVAHSLAVELCVPGLHGWATVMLLSTFCFGWVLIPAVTLIILKCLRVLTFSCSHYTNESKFKFILEKVKIEYQKTMGSMVCDVCHHECETAKELESHRQSCINGQCPYCMTITEATESALQAHYSICKLTGRFQEALKKSLKKPEVKKGCYRTLGVFRYKSRCYVGLVWCLLLTCEIVIWAASA", "nuc": "TAGTAGTAGACTCCGCAAGAAGAAGCAAAAAATTAAAGAAGTGAGTTTAAAATGGAAGGGTGGTATCTGGTTGTTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCCAAGACCATTTATGAGCTTAAAATGGAATGCCCGCACACTGTGGGTCTCGGTCAAGGTTACATCATTGGCTCAACAGAACTAGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTCGAGAGCTCTTGCAATTTTGATCTTCATACAACATCTATGGCCCAGAAGAGTTTCACCCAAGTTGAATGGAGAAAGAAAAGTGACACAACTGATACCACAAATGCTGCGTCCACTACCTTTGAAGCACAAACTAAAACTGTTAACCTTAGAGGGACTTGTATACTGGCACCTGAACTCTATGATACATTGAAGAAAGTAAAAAAGACAGTCCTGTGCTATGATCTAACATGTAATCAAACACATTGTCAGCCAACTGTCTATCTGATTGCACCTGTATTGACATGCATGTCAATAAGAAGTTGTATGGCTAGTGTGTTTACAAGCAGGATTCAGGTGATTTATGAAAAGACACATTGTGTAACAGGTCAGCTGATTGAGGGTCAGTGTTTCAACCCAGCACACACATTGACATTATCTCAGCCTGCTCACACTTATGATACTGTCACCCTTCCTATCTCTTGTTTTTTCACACCAAAGAAGTCGGAGCAACTAAAAGTTATAAAAACATTTGAAGGAATTCTGACGAAGACAGGTTGCACGGAGAATGCATTGCAGGGTTATTATGTGTGTTTTTTAGGGAGTCATTCAGAACCTTTAATTGTTCCGAGTTTGGAGGACATACGGTCTGCTGAAGTTGTTAGTAGGATGCTTGTACACCCTAGGGGAGAAGACCATGATGCCATACAGAATTCACAAAGTCACTTAAGAATAGTGGGACCTATCACAGCAAAAGTGCCATCAACTAGTTCCACAGATACCCTAAAGGGGACAGCCTTTGCAGGCGTCCCAATGTATAGCTCTTTATCTACACTAGTCAGAAATGCAGACCCAGAATTTGTATTTTCTCCAGGTATAGTACCTGAATCTAATCACAGTACATGTGATAAGAAGACAGTACCTATCACATGGACAGGCTACCTACCAATATCAGGTGAGATGGAAAAAGTGACTGGATGTACAGTTTTTTGTACACTAGCAGGACCTGGTGCTAGTTGTGAGGCCTATTCTGAAAATGGTATATTTAACATCAGTTCTCCAACATGTCTTGTAAACAAAGTCCAAAGATTTCGTGGATCTGAACAGAAAATAAATTTTATCTGTCAGCGGGTAGATCAGGATGTTGTTGTATACTGCAATGGGCAAAAGAAAGTCATATTAACCAAAACTTTGGTTATTGGGCAGTGTATTTATACATTCACAAGCCTATTTTCATTGATGCCTGATGTAGCCCACTCATTGGCTGTAGAATTATGTGTCCCGGGATTACATGGATGGGCCACTGTCATGCTTCTATCAACATTCTGCTTTGGGTGGGTCTTGATTCCTGCGGTCACATTAATAATATTAAAGTGTCTAAGGGTTTTGACGTTTTCTTGTTCCCATTACACTAATGAGTCAAAATTTAAATTCATCCTGGAAAAAGTTAAAATTGAATACCAAAAGACTATGGGATCAATGGTGTGCGATGTATGTCATCATGAGTGTGAAACAGCAAAAGAACTTGAATCACATAGACAGAGTTGTATCAATGGACAATGTCCTTATTGCATGACAATAACTGAAGCAACTGAAAGTGCCTTGCAAGCCCATTATTCCATTTGTAAATTGACAGGAAGATTTCAGGAGGCACTGAAAAAGTCACTTAAAAAGCCAGAGGTAAAAAAAGGTTGTTACAGAACACTCGGGGTATTTAGATATAAAAGTAGATGTTATGTGGGTTTGGTATGGTGCCTATTGTTGACATGTGAAATTGTTATTTGGGCCGCAAGTGCAGAGACTCCACTAATGGAGTCAGGCTGGTCAGATACGGCTCATGGTGTTGGTGAGATTCCAATGAAGACAGACCTCGAGCTGGACTTTTCACTGCCTTCTTCATCCTCTTACAGTTATAGGAGAAAGCTCACAAACCCAGCCAATAAAGAAGAGTCTATTCCCTTCCACTTCCAGATGGAAAAACAAGTAATTCATGCTGAAATCCAACCCCTGGGTCATTGGATGGATGCGACATTTAATATTAAGACTGCATTTCATTGTTATGGTGCATGCCAGAAATACTCTTATCCATGGCAGACATCTAAGTGCTTCTTTGAAAAGGACTACCAGTATGAAACAGGCTGGGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGATGCACTGCTTGTGGTGTTTATCTCGATAAACTAAAATCTGTTGGGAAGGCCTATAAGATAATTTCTTTAAAATATACCAGAAAGGTTTGTATTCAGTTAGGAACAGAACAAACTTGCAAGCATATTGATGCAAATGATTGTTTAGTGACACCATCTGTGAAAGTTTGCATAGTGGGCACAGTTTCAAAACTTCAACCATCTGATACTCTTTTGTTCTTAGGTCCACTAGAACAAGGGGGAATCATTCTTAAGCAATGGTGCACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCCACTCCCAGTGGTATGAGGTGTCCAGAGCACACTGGATCATTTAGGAAAATTTGCGGTTTTGCTACTACACCAGTTTGTGAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATGGCAACAAAAGATTCATTCCAATCATTTAACTTAACAGAACCTCACATCACAACAAACAAGCTTGAATGGATCGACCCAGATGGGAATACAAGAGACCACGTAAACCTTGTCTTAAATAGAGATGTCTCATTTCAGGATTTAAGTGATAACCCCTGTAAAGTAGACCTACACACACAAGCAATAGAAGGGGCATGGGGTTCTGGTGTAGGGTTTACACTCACATGTACTGTCGGATTAACAGAGTGCCCAAGTTTTATGACATCAATTAAGGCATGTGACCTAGCTATGTGTTATGGATCAACAGTAACAAACCTTGCCAGGGGCTCTAATACAGTGAAAGTAGTTGGTAAAGGAGGCCATTCAGGGTCCTCATTTAAATGCTGTCATGATACAGATTGCTCCTCTGAAGGTTTACTTGCATCAGCCCCTCATCTTGAGAGGGTAACAGGATTCAATCAAATTGATTCAGATAAGGTTTATGATGATGGTGCACCACCTTGCACATTCAAATGCTGGTTCACTAAGTCAGGTGAGTGGCTTCTTGGGATCTTAAACGGGAATTGGATTGTTGTTGTAGTGCTTGTTGTGATACTCATTCTCTCTATCATAATGTTCAGTGTTTTGTGTCCCAGGAGAGGGCACAAGAAAACTGTCTAAGCATTGACCTCAACTCCTACATTAGATCATATACATTTATGCACTTCCTCATATTTAGCTGCACTAAGATATTAATAAACTCTAGTTATTGACTTTATAAGATTATTATGGAACTAACCTCACTTAAAAAAAACAAATACTTTACTCATATATAACTCCATATTCTCTTACCGAGGCTTTTGTTCCTGCGGAGCATACTACTA"}} \ No newline at end of file diff --git a/data/nextstrain/orthohantavirus/andv/s/CHANGELOG.md b/data/nextstrain/orthohantavirus/andv/s/CHANGELOG.md index 247243235..894bac942 100644 --- a/data/nextstrain/orthohantavirus/andv/s/CHANGELOG.md +++ b/data/nextstrain/orthohantavirus/andv/s/CHANGELOG.md @@ -1,3 +1,10 @@ +## Unreleased + +- update outbreak name to 2026-Hondius +- make nucleotide default sequence view. +- add GPC amino acid substitutions + + ## 2026-05-11T18:59:50Z - Updating Nextclade dataset with the latest sequences and metadata from Pathoplexus diff --git a/data/nextstrain/orthohantavirus/andv/s/pathogen.json b/data/nextstrain/orthohantavirus/andv/s/pathogen.json index 0db90ae3b..00df66bef 100644 --- a/data/nextstrain/orthohantavirus/andv/s/pathogen.json +++ b/data/nextstrain/orthohantavirus/andv/s/pathogen.json @@ -10,13 +10,12 @@ "changelog": "CHANGELOG.md" }, "schemaVersion": "3.0.0", - "defaultCds": "N", "attributes": { "name": "Andesvirus (segment S)", "reference name": "Chile-9717869", - "reference accession": "NC_003466" + "reference accession": "NC_003466", + "experimental": true }, - "experimental": true, "alignmentParams": { "penaltyGapExtend": 1, "penaltyGapOpen": 8, @@ -62,4 +61,4 @@ "windowSize": 50 } } -} \ No newline at end of file +} diff --git a/data/nextstrain/orthohantavirus/andv/s/tree.json b/data/nextstrain/orthohantavirus/andv/s/tree.json index c7392873c..0396df329 100644 --- a/data/nextstrain/orthohantavirus/andv/s/tree.json +++ b/data/nextstrain/orthohantavirus/andv/s/tree.json @@ -1 +1 @@ -{"version": "v2", "meta": {"title": "Andes Virus S Segment (ANDV)", "updated": "2026-05-11", "build_url": "https://github.com/nextstrain/andv", "data_provenance": [{"name": "Pathoplexus", "url": "https://pathoplexus.org/"}], "maintainers": [{"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}], "display_defaults": {"map_triplicate": false, "color_by": "outbreak", "distance_measure": "div"}, "genome_annotations": {"N": {"end": 1329, "seqid": "defaults/s/reference.gb", "start": 43, "strand": "+", "type": "CDS"}, "NSs": {"end": 313, "seqid": "defaults/s/reference.gb", "start": 122, "strand": "+", "type": "CDS"}, "nuc": {"end": 1871, "start": 1, "strand": "+", "type": "source"}}, "colorings": [{"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "date", "title": "Collection Date", "type": "categorical"}, {"key": "region", "title": "Region", "type": "categorical", "scale": [["Africa", "#CEB541"], ["Europe", "#E39B39"], ["South America", "#E56C2F"]]}, {"key": "country", "title": "Country", "type": "categorical"}, {"key": "division", "title": "Admin Division", "type": "categorical"}, {"key": "host", "title": "Host", "type": "categorical"}, {"key": "abbr_authors", "title": "Authors", "type": "categorical"}, {"key": "dataUseTerms", "title": "Data use terms", "type": "categorical"}, {"key": "restrictedUntil", "title": "Restricted Until", "type": "categorical"}, {"key": "date_released", "title": "Release Date", "type": "categorical"}, {"key": "length", "title": "Length", "type": "continuous"}, {"key": "INSDC_accession", "title": "INSDC Accession", "type": "categorical"}, {"key": "PPX_accession", "title": "Pathoplexus Accession", "type": "categorical"}, {"key": "institution", "title": "Author Affiliations", "type": "categorical"}, {"key": "totalAmbiguousNucs", "title": "Ambiguous Nucleotides", "type": "continuous"}, {"key": "outbreak", "title": "outbreak", "type": "categorical"}], "filters": ["country", "division", "host", "abbr_authors", "clade_membership"], "geo_resolutions": [{"key": "country", "demes": {"Switzerland": {"latitude": 46.8182, "longitude": 8.2275}, "Netherlands": {"latitude": 52.1326, "longitude": 5.2913}, "Chile": {"latitude": -31.7613364, "longitude": -71.3187696}, "Paraguay": {"latitude": -23.3165935, "longitude": -58.1693445}, "South Africa": {"latitude": -28.8166235, "longitude": 24.991639}, "Brazil": {"latitude": -10.3333332, "longitude": -53.1999999}, "Uruguay": {"latitude": -33.0, "longitude": -56.0}, "Peru": {"latitude": -9.650468, "longitude": -75.328211}, "Bolivia": {"latitude": -17.0568696, "longitude": -64.9912286}, "Argentina": {"latitude": -37.052315, "longitude": -64.869142}}}], "panels": ["tree", "entropy"], "extensions": {"nextclade": {"clade_node_attrs": [{"name": "outbreak", "displayName": "Outbreak", "description": "Annotation of recent outbreaks (to be refined)", "skipAsReference": false}], "placement_masks": [{"begin": 0, "end": 42}, {"begin": 1329, "end": 1871}]}}}, "tree": {"name": "NODE_0000000", "node_attrs": {"div": 0, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G63A", "C72T", "A78C", "G120A", "G129A", "A135G", "G150A", "C156G", "T225C", "T244C", "T262C", "T306C", "A312G", "A321G", "A333G", "T354C", "T357C", "A360C", "T366C", "T367C", "G369T", "G378A", "A384T", "G387A", "T390A", "A408T", "A411G", "A414T", "C420A", "T421C", "A423G", "G426A", "G438A", "C444A", "G450A", "C453T", "G465T", "A468C", "A480G", "A483G", "T486A", "G489C", "A492G", "G510A", "T519C", "T531A", "C546G", "T558G", "A561G", "A567G", "C570T", "T573G", "C576T", "G597A", "T603A", "A618G", "C621A", "G624A", "C631A", "A633G", "T636C", "G639A", "T648A", "C654T", "T657A", "T660C", "A663T", "G669A", "C672G", "A687C", "A690T", "A699C", "A705G", "A714T", "G718A", "A729G", "T744A", "C745A", "G756T", "T759C", "A768T", "T774C", "C780T", "A792C", "T797C", "C798T", "G799C", "C801A", "A804T", "A807G", "C810A", "T817G", "A829G", "T830C", "G831C", "T837C", "G840T", "A846G", "A852G", "A855G", "C858T", "A859G", "A868C", "G870A", "T873C", "A875C", "T882A", "A883G", "C885T", "T888A", "T889C", "A894T", "G906A", "C909T", "T915A", "T918A", "T922C", "G933C", "A939T", "C941G", "A942C", "C954G", "G960A", "T975A", "C979A", "T987A", "A990G", "T993A", "G999A", "A1014T", "G1017A", "T1023G", "A1029T", "T1032C", "T1036G", "C1054A", "T1056A", "T1074A", "A1077G", "A1083G", "G1086A", "A1104G", "A1110G", "C1119T", "C1135T", "T1152A", "A1158G", "G1173A", "A1209G", "T1221C", "C1224T", "T1242C", "C1248T", "A1254G", "C1257T", "G1260A", "A1266T", "A1269T", "T1275A", "C1276T", "C1281T", "C1302T", "C1305A", "C1318T", "T1320A", "T1324C", "G1329A", "C1344-", "A1353T", "A1356T", "T1401-", "A1407C", "G1419C", "C1436T", "A1437G", "T1440A", "A1442G", "G1447T", "G1450C", "G1451A", "T1462C", "G1470-", "T1473A", "C1480T", "A1500-", "G1502-", "C1510T", "G1514-", "G1535C", "G1538T", "G1539A", "G1542T", "T1582-", "G1589-", "G1592C", "T1607A", "G1634T", "G1645A", "G1656-", "G1680T", "T1681-", "T1685-", "G1687-", "G1688-", "C1707T", "G1715A", "A1721G", "G1740T", "G1745-", "C1746-", "T1748G", "A1759T", "T1760A", "G1762A", "G1777A", "C1787T", "T1792A", "A1804T", "C1816A", "C1830A"], "N": ["D38E", "G226S", "D234E", "E238D", "V252T", "A253P", "S259A", "M263A", "E274D", "Q278P", "I281V", "H286Q", "S332A"], "NSs": ["R3K", "T12R", "L35S", "I62T"]}, "labels": {"aa": "N: D38E, G226S, D234E, E238D, V252T, A253P, S259A, M263A, E274D, Q278P, I281V, H286Q, S332A; NSs: R3K, T12R, L35S, I62T"}}, "children": [{"name": "NODE_0000001", "node_attrs": {"div": 0.0287445, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T105C", "C106A", "A111G", "G135C", "A222G", "A234G", "C244T", "G321A", "T465G", "G477A", "A555T", "G573T", "A597G", "G609A", "A642T", "A681G", "T696A", "G796A", "A801T", "C831T", "A907T", "C933A", "C978T", "G1011A", "T1014A", "T1029C", "T1044A", "A1137G", "A1149G", "C1161T", "A1197G", "A1212G", "C1242T", "G1263A", "C1333G", "A1396G", "C1403-", "T1404-", "T1417C", "C1419G", "C1459T", "G1469-", "G1501-", "C1504-", "C1505-", "A1506-", "C1507-", "T1513-", "G1529-", "A1530-", "A1531-", "A1581G", "A1601G", "T1621C", "G1622A", "-1656T", "G1721A"], "N": ["N273D", "D274E", "K276Q", "T289S", "T300S"], "NSs": ["R10Q", "N34S", "N38S"]}, "labels": {"aa": "N: N273D, D274E, K276Q, T289S, T300S; NSs: R10Q, N34S, N38S"}}, "children": [{"name": "PP_006VQ61|14403|nan/XXXX-XX-XX", "node_attrs": {"div": 0.132908, "strain": {"value": "PP_006VQ61|14403|nan/XXXX-XX-XX"}, "accession": "PP_006VQ61", "author": {"author": "Bohlman, M. C.; Morzunov, S. P.; Meissner, J.; Taylor, M. B.; Ishibashi, K.; Rowe, J.; Levis, S.; Enria, D.; St Jeor, S. C.; Meissner, J. D.; St. Jeor, S. C.", "value": "Bohlman, M. C.; Morzunov, S. P.; Meissner, J.; Taylor, M. B.; Ishibashi, K.; Rowe, J.; Levis, S.; Enria, D.; St Jeor, S. C.; Meissner, J. D.; St. Jeor, S. C."}, "length": {"value": 1860}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "University of Nevada, Reno, Microbiology"}, "PPX_accession": {"value": "PP_006VQ61.1", "url": "https://pathoplexus.org/seq/PP_006VQ61.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2002-02-27"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Bohlman et al."}, "INSDC_accession": {"value": "AF482717.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF482717.1"}, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G28A", "G33A", "A63G", "G93T", "G99C", "G114A", "A129G", "G133A", "G141A", "G156A", "T159C", "C172T", "A189G", "C216T", "A261G", "A268G", "A273G", "A318G", "C328T", "C346T", "A378G", "G402A", "T405A", "C417T", "A447G", "T453A", "T454C", "C463T", "G465A", "G483A", "C489T", "G504C", "G522A", "A543G", "G546A", "T555C", "A564G", "G567A", "C579T", "T591A", "G618A", "A630C", "C636T", "A648T", "T654G", "A657T", "G672T", "A675G", "C679A", "C687A", "T717C", "T726C", "G729C", "T735C", "G747A", "A750T", "C760T", "G762A", "T768A", "C774T", "A777G", "T781C", "C792T", "G795A", "T798C", "C799A", "T801C", "G817T", "T819A", "C822T", "C838T", "T840A", "G852A", "T879C", "T884C", "T885A", "T894A", "C897A", "T900G", "T903G", "C921T", "C922T", "G924A", "T927C", "T939A", "C945T", "G954A", "G981A", "A987G", "G990T", "A996C", "T997C", "A999G", "G1023T", "T1026G", "C1032T", "C1041A", "G1047A", "A1056G", "T1059C", "C1062A", "C1065A", "T1080G", "G1083C", "A1086G", "G1104C", "A1113G", "A1128G", "A1138C", "A1140G", "G1143A", "A1146C", "A1164G", "C1165T", "C1170T", "A1173G", "C1179T", "T1188C", "C1191T", "C1195T", "T1206A", "G1218C", "C1221T", "C1227T", "T1257C", "T1266G", "T1273G", "A1275T", "T1284C", "T1287A", "G1290A", "G1293A", "A1305T", "A1320G", "G1323A", "C1324T", "T1334A", "T1338G", "A1340G", "A1341C", "T1343G", "-1344T", "T1350G", "G1351C", "A1352T", "A1355G", "T1356A", "A1357C", "A1359G", "C1360T", "C1364T", "T1380C", "C1398T", "A1400-", "C1402-", "T1413A", "A1440G", "A1441T", "G1442-", "T1448C", "C1450T", "G1471-", "T1472-", "A1473-", "C1474-", "T1485-", "T1486-", "G1493T", "G1494T", "G1495T", "A1498T", "-1500A", "G1503-", "T1510A", "-1513A", "A1526C", "G1527A", "G1534T", "C1535T", "G1536T", "T1538A", "G1541A", "T1542C", "G1543T", "G1547T", "T1548A", "T1550G", "G1551T", "G1558-", "T1563A", "A1565T", "G1566C", "T1567C", "T1568A", "T1572A", "C1578T", "T1580G", "-1582T", "A1587G", "-1589C", "G1591T", "C1592T", "T1595C", "C1612G", "T1620C", "T1629A", "G1633A", "G1639T", "T1640C", "A1655G", "A1664T", "G1666A", "G1670T", "T1671A", "A1672G", "G1674A", "T1675A", "G1679T", "T1680C", "-1681C", "T1683G", "A1686-", "T1689-", "T1690-", "A1691-", "A1692-", "G1693-", "T1696A", "C1699T", "T1707-", "T1716C", "T1719A", "T1739A", "C1763T", "A1778G", "C1791T", "C1797T", "A1815C", "A1830C", "T1834C"], "N": ["Q17H", "A31T", "T76A", "P253T", "A259S", "V281A", "D282E", "D285E", "S411A"], "NSs": ["K3R", "Q5P", "R7K", "R12K", "L13S", "Q23R", "S32L", "N47S", "N51S"]}, "labels": {"aa": "N: Q17H, A31T, T76A, P253T, A259S, V281A, D282E, D285E, S411A; NSs: K3R, Q5P, R7K, R12K, L13S, Q23R, S32L, N47S, N51S"}}}, {"name": "NODE_0000002", "node_attrs": {"div": 0.0597039, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C50A", "C126A", "G132A", "G141T", "A178G", "T198A", "C292A", "G333A", "C360T", "T384A", "T396C", "A450G", "C468A", "C507T", "G577A", "A582T", "A627T", "C655T", "T819C", "T834C", "A975T", "T1005A", "C1102T", "A1131T", "A1141C", "T1188G", "A1200C", "A1272G", "A1317T", "C1378T", "-1401T", "A1451T", "A1473C", "T1588-", "T1668C", "-1687T", "C1767T", "A1770T"], "N": ["T3N", "E33D", "S46G", "L84I", "V179I"], "NSs": ["P2Q", "R4K", "L26Q"]}, "labels": {"aa": "N: T3N, E33D, S46G, L84I, V179I; NSs: P2Q, R4K, L26Q"}}, "children": [{"name": "PP_006VQ53|13796|nan/XXXX-XX-XX", "node_attrs": {"div": 0.159332, "strain": {"value": "PP_006VQ53|13796|nan/XXXX-XX-XX"}, "accession": "PP_006VQ53", "author": {"author": "Bohlman, M. C.; Morzunov, S. P.; Meissner, J.; Taylor, M. B.; Ishibashi, K.; Rowe, J.; Levis, S.; Enria, D.; St Jeor, S. C.; Meissner, J. D.; St. Jeor, S. C.", "value": "Bohlman, M. C.; Morzunov, S. P.; Meissner, J.; Taylor, M. B.; Ishibashi, K.; Rowe, J.; Levis, S.; Enria, D.; St Jeor, S. C.; Meissner, J. D.; St. Jeor, S. C."}, "length": {"value": 1869}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "University of Nevada, Reno, Microbiology"}, "PPX_accession": {"value": "PP_006VQ53.1", "url": "https://pathoplexus.org/seq/PP_006VQ53.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2002-02-27"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Bohlman et al."}, "INSDC_accession": {"value": "AF482716.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF482716.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "Argentine bolo mouse"}}, "branch_attrs": {"mutations": {"nuc": ["G19T", "C32T", "G33A", "A63G", "G66A", "A69G", "C78T", "G93A", "T117G", "T141C", "C168T", "A181C", "C216T", "G231A", "A240T", "T243C", "T327C", "C328T", "G348T", "C357T", "T369G", "A390C", "G411A", "T414A", "A426T", "A438G", "A444C", "A456G", "A486G", "A501G", "A513T", "G516A", "C534T", "G546A", "C556A", "T573C", "T576C", "T582C", "A588G", "A594T", "A615G", "A630G", "C636T", "T642G", "C647T", "T654A", "A657G", "C660T", "A666T", "T690A", "T693C", "C699G", "A708C", "C720T", "A745C", "A753G", "A755G", "T756A", "C760T", "T765A", "T768G", "G771A", "A777T", "T780C", "G795A", "T798A", "C799G", "T802G", "G808A", "T831A", "C837T", "C838T", "G849A", "A850C", "G852C", "A864G", "A882T", "G891T", "T900G", "A906G", "A915T", "A918C", "T936A", "A960G", "C984T", "A1005G", "A1014G", "A1020G", "G1023A", "C1032T", "T1038C", "C1041A", "G1047A", "C1050T", "C1065T", "T1089A", "A1092T", "A1095G", "G1104A", "T1116A", "T1119A", "C1125T", "C1134T", "G1143A", "A1173G", "A1182C", "C1191T", "C1195T", "C1200T", "G1254A", "C1255T", "T1257G", "T1266A", "T1269A", "T1273G", "A1275T", "G1278A", "G1290A", "T1302C", "A1311G", "A1320G", "G1333-", "T1335C", "A1340T", "A1342G", "-1344T", "T1346G", "G1347T", "A1348C", "G1351A", "A1357G", "A1359G", "C1360T", "C1365A", "A1381G", "C1397G", "A1400G", "T1423G", "T1424A", "T1439G", "C1450A", "T1451C", "T1453-", "A1467T", "-1469C", "-1470T", "A1475T", "T1496G", "T1497A", "-1500T", "-1501G", "-1502G", "-1504G", "-1505A", "-1506T", "-1507A", "T1510C", "-1514G", "T1517G", "T1519-", "G1520-", "C1523G", "A1526T", "G1528T", "G1534T", "G1536A", "G1543A", "T1549G", "A1564T", "T1569G", "T1574-", "A1575-", "A1576-", "T1577-", "C1578-", "A1579-", "T1580-", "G1581-", "T1584G", "-1588G", "-1589T", "T1595C", "C1599T", "C1612A", "G1614A", "T1617C", "G1623A", "A1626-", "T1627-", "T1628-", "T1629-", "T1630-", "T1636-", "A1637-", "A1641C", "G1648A", "T1649C", "T1650C", "A1653T", "T1657A", "G1659C", "T1660A", "G1661-", "A1665T", "T1667C", "A1669T", "G1670T", "T1673A", "T1676C", "T1680-", "-1685A", "-1688C", "T1689A", "A1691T", "T1696A", "T1697C", "C1703T", "A1705C", "T1712C", "A1713T", "A1718C", "T1719A", "T1739G", "C1756A", "T1769A", "C1771A", "A1778C", "A1793G", "C1794A", "C1799T", "T1804-", "C1818A", "A1829G", "T1833A", "T1853C"], "N": ["A202V", "D238G", "P253A", "S254A", "A256T", "L266F", "D282E", "S411A"], "NSs": ["Q5P", "R7T", "A16V", "S32L", "G37D", "Q40L", "I41T"]}, "labels": {"aa": "N: A202V, D238G, P253A, S254A, A256T, L266F, D282E, S411A; NSs: Q5P, R7T, A16V, S32L, G37D, Q40L, I41T"}}}, {"name": "NODE_0000003", "node_attrs": {"div": 0.142665, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T72C", "C135A", "G138T", "C172T", "A189G", "C210A", "A219G", "C225T", "T237G", "G249T", "A252G", "A260G", "A268T", "G312A", "T327A", "C345G", "C366T", "A375G", "A387G", "T393A", "T405A", "A420C", "C421T", "T435C", "A438T", "C441T", "T453C", "C459T", "C489G", "G504C", "G561A", "A603C", "A639G", "A718G", "G732A", "C759T", "G762A", "T765C", "G766T", "G789A", "C797A", "T804A", "C822T", "T825C", "T840C", "G846A", "G851A", "G855A", "A876C", "T885A", "A888T", "C889T", "G891A", "T907G", "C922T", "G924A", "C929A", "T939C", "C945A", "A951T", "G954A", "A972T", "A1008T", "G1012A", "A1017T", "C1021T", "T1038G", "C1042T", "A1044G", "A1056G", "A1074C", "T1080A", "G1083T", "A1086G", "G1098A", "A1152C", "T1161A", "G1176A", "C1186T", "G1209A", "T1233G", "T1251A", "A1258C", "A1260T", "G1293T", "G1330A", "T1331C", "A1341G", "T1343-", "A1345G", "T1350C", "A1352C", "T1353C", "T1370C", "T1371A", "T1380-", "A1393C", "-1403T", "-1404T", "A1406-", "C1407-", "G1409A", "G1411-", "T1413C", "A1415C", "G1442A", "T1452A", "A1467-", "A1478G", "T1480C", "A1481-", "T1482C", "G1493-", "T1497C", "A1509-", "T1510-", "A1511G", "T1512-", "A1525G", "A1532-", "G1541T", "A1553G", "G1561A", "A1575G", "A1586C", "A1590-", "C1592T", "A1593C", "T1627G", "T1628A", "T1631C", "T1634G", "T1636A", "A1638T", "G1639A", "A1647-", "G1648-", "A1652T", "A1653G", "A1655T", "T1656G", "G1661A", "A1665G", "G1666A", "T1667A", "G1674-", "T1675-", "T1676-", "G1679T", "-1681G", "T1683C", "-1685T", "-1688G", "T1707G", "A1715G", "T1759A", "A1760T", "A1777G", "C1797T", "A1816C"], "N": ["K73R", "T76S", "S226A", "A242S", "T252N", "R270K", "Q286H", "S289A", "T296K", "V324L", "E424G"], "NSs": ["W6L", "R7M", "Q23R", "P30Q", "E33G", "S35L", "L39W", "W43L", "Q44R", "N47D"]}, "labels": {"aa": "N: K73R, T76S, S226A, A242S, T252N, R270K, Q286H, S289A, T296K, V324L, E424G; NSs: W6L, R7M, Q23R, P30Q, E33G, S35L, L39W, W43L, Q44R, N47D"}}, "children": [{"name": "PP_006VX14|LBCE 9480|Brazil/2006-XX-XX", "node_attrs": {"div": 0.193358, "strain": {"value": "PP_006VX14|LBCE 9480|Brazil/2006-XX-XX"}, "accession": "PP_006VX14", "author": {"author": "Guterres, A.; de Oliveira, R. C.; Fernandes, J.; Schrago, C. G.; de Lemos, E. R.; Oliveira, R. C.; Lemos, E. R. S.", "value": "Guterres, A.; de Oliveira, R. C.; Fernandes, J.; Schrago, C. G.; de Lemos, E. R.; Oliveira, R. C.; Lemos, E. R. S."}, "division": {"value": "Goias State"}, "length": {"value": 1858}, "date": {"value": "2006-XX-XX"}, "institution": {"value": "Instituto Oswaldo Cruz - FIOCRUZ, Laboratorio de Hantaviroses e Rickettsioses"}, "country": {"value": "Brazil"}, "PPX_accession": {"value": "PP_006VX14.1", "url": "https://pathoplexus.org/seq/PP_006VX14.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2015-09-15"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Guterres et al."}, "INSDC_accession": {"value": "KP202360.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/KP202360.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "hairy-tailed bolo mouse"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["G165A", "C235T", "G297A", "C306T", "C310T", "A318G", "G330T", "C354T", "C357T", "A372G", "C471T", "G483A", "A513T", "T555C", "T576C", "T651C", "T663A", "G672A", "A675G", "T684C", "T690C", "T714C", "G719C", "C720A", "C723T", "A744G", "G747A", "G771A", "T786C", "C792T", "T801C", "C837T", "C843T", "A844C", "A870G", "C876T", "A915G", "C921T", "A930G", "A954T", "T963C", "T972C", "G981A", "A999G", "T1008C", "A1014G", "C1050T", "C1065T", "C1074T", "G1077A", "G1086C", "C1122T", "C1134T", "G1197A", "G1218A", "T1230C", "T1248C", "G1254A", "T1260C", "G1299-", "T1302C", "G1323A", "C1331-", "G1333A", "T1335A", "G1339T", "-1343C", "-1344G", "A1348G", "C1350G", "C1352T", "A1357G", "A1359T", "C1364T", "C1369T", "C1370G", "T1373A", "-1380C", "C1393T", "G1394A", "C1397G", "-1406T", "-1407A", "T1410-", "C1417-", "T1423C", "T1425A", "A1441G", "A1442T", "A1452G", "T1453C", "A1468-", "G1471-", "C1473T", "C1474A", "A1475C", "T1477G", "G1478T", "C1482-", "T1483-", "-1493T", "G1495-", "G1503-", "T1508-", "G1511-", "G1525C", "A1526G", "-1529G", "-1530G", "-1531T", "C1535G", "T1538C", "A1539C", "T1545A", "G1547C", "T1548C", "T1549A", "G1553-", "T1555G", "A1561-", "A1565T", "T1569A", "T1570A", "G1575C", "T1577A", "C1578A", "G1581T", "-1582T", "C1586T", "-1588A", "-1589G", "-1590T", "C1593T", "T1595A", "T1602C", "C1612G", "C1624T", "C1631-", "A1636G", "T1644C", "A1694G", "T1697C", "C1717A", "A1721G", "T1739C", "T1755-", "T1803C", "T1833C", "G1835T"], "N": ["L324M"], "NSs": ["R15K", "S59N", "T62I"]}, "labels": {"aa": "N: L324M; NSs: R15K, S59N, T62I"}}}, {"name": "PP_006VR9U|P5/Cajuru|Brazil/XXXX-XX-XX", "node_attrs": {"div": 0.182809, "strain": {"value": "PP_006VR9U|P5/Cajuru|Brazil/XXXX-XX-XX"}, "accession": "PP_006VR9U", "author": {"author": "de Sousa, R. L.; Moreli, M. L.; Borges, A. A.; Campos, G. M.; Livonesi, M. C.; Figueiredo, L. T.; Pinto, A. A.; Sousa, R. L. M.; Figueiredo, L. T. M.", "value": "de Sousa, R. L.; Moreli, M. L.; Borges, A. A.; Campos, G. M.; Livonesi, M. C.; Figueiredo, L. T.; Pinto, A. A.; Sousa, R. L. M.; Figueiredo, L. T. M."}, "division": {"value": "Sao Paulo State"}, "length": {"value": 1858}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "Universidade de Sao Paulo, Centro de Pesquisa em Virologia"}, "country": {"value": "Brazil"}, "PPX_accession": {"value": "PP_006VR9U.1", "url": "https://pathoplexus.org/seq/PP_006VR9U.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2007-05-22"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "de Sousa et al."}, "INSDC_accession": {"value": "EF571895.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/EF571895.1"}, "outbreak": {"value": "unassigned"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["G156A", "G222A", "G231A", "A324G", "T358C", "T363C", "A384C", "A426T", "G492A", "A501G", "A510G", "G552A", "T591A", "G597A", "T654G", "A708G", "A777T", "C813T", "C819A", "G828A", "G849A", "A864G", "C873T", "T927C", "A933G", "C942T", "T978C", "G990A", "A993T", "A1011G", "A1012T", "C1041T", "G1101A", "G1104A", "G1110A", "T1119C", "C1125T", "G1137A", "G1149A", "G1158A", "C1165T", "C1185T", "A1263G", "T1287C", "A1313G", "G1314A", "T1317C", "A1328G", "G1332A", "T1334C", "A1337T", "A1340G", "A1342-", "G1345-", "G1351C", "C1353A", "G1354C", "A1355C", "T1356C", "G1358C", "C1360G", "T1361C", "T1362C", "T1363C", "G1372A", "G1374C", "T1378-", "A1379-", "A1381-", "T1382-", "A1384G", "A1385C", "T1386C", "T1389C", "T1391C", "G1395A", "A1400C", "C1402A", "A1409T", "-1411C", "A1416C", "T1424A", "T1428C", "A1429T", "T1430C", "A1432C", "G1433A", "G1434C", "T1436C", "A1440C", "A1441C", "G1444C", "T1447G", "T1448C", "C1455A", "T1459C", "A1461C", "G1463C", "G1464-", "G1465-", "T1466-", "-1469G", "-1470G", "T1476C", "-1481C", "T1484C", "T1485G", "T1486C", "G1487C", "A1489C", "A1492-", "A1499T", "-1500A", "-1501T", "-1502C", "-1504C", "-1505C", "-1506A", "-1507C", "-1509C", "-1510G", "-1512G", "-1513G", "-1514G", "T1515C", "A1516T", "T1517G", "T1518C", "T1519G", "C1523-", "G1527T", "G1528T", "-1529T", "-1530C", "-1531A", "-1532T", "T1533C", "G1534C", "G1536C", "T1542G", "G1543-", "T1544-", "G1551A", "G1558A", "T1559A", "G1566C", "T1571A", "T1572C", "A1573G", "A1576C", "T1580C", "A1587C", "G1591-", "T1592G", "A1594C", "T1596C", "T1600C", "G1601T", "T1602G", "A1607-", "A1611C", "A1619G", "T1620A", "C1621T", "A1622C", "T1625A", "T1629C", "A1641C", "T1643C", "A1645C", "T1646A", "T1654C", "A1661T", "C1668A", "A1678C", "T1679C", "T1682C", "T1690C", "A1691C", "T1696C", "A1704C", "G1715-", "T1716-", "T1720G", "T1736C", "T1740G", "G1741C", "C1742T", "-1745G", "-1746C", "T1747A", "G1748-", "C1749-", "T1750-", "C1756-", "A1762G", "T1787C", "C1802T", "T1834-", "T1848-", "T1853C"], "N": ["S106P", "A226G"], "NSs": ["R12K", "S34N", "G37D"]}, "labels": {"aa": "N: S106P, A226G; NSs: R12K, S34N, G37D"}}}]}]}]}, {"name": "NODE_0000004", "node_attrs": {"div": 0.0157504, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C78A", "A150G", "T369G", "A390T", "G423A", "A444C", "G480A", "G546C", "T654C", "T714G", "T780C", "G859A", "C868A", "C875A", "A888C", "G941C", "A1152T", "-1344C", "T1353A", "C1407A", "-1470G", "-1502G", "C1535G", "T1542G", "-1582G", "-1589A", "C1592G", "T1634-", "T1680G", "-1681T", "A1715G"], "N": ["P278Q", "Q286H"]}, "labels": {"aa": "N: P278Q, Q286H"}}, "children": [{"name": "NODE_0000005", "node_attrs": {"div": 0.044097, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G28A", "G133A", "C366T", "T435A", "A486T", "G492A", "C534A", "G552T", "A564T", "T591A", "C600A", "A615G", "C679A", "T684C", "T765A", "G828A", "T840A", "T867A", "T903A", "A979C", "G981T", "A996C", "A1054C", "T1089A", "A1092T", "G1104C", "A1128G", "T1215A", "T1331A", "T1422G", "T1472A", "T1476C", "T1483C", "C1507T", "A1511T", "-1514A", "T1600C", "G1633-", "G1639-", "A1651T", "A1655-", "T1657-", "T1658-", "A1710T", "T1711A", "T1716C", "A1734G", "C1738A", "T1820A", "A1831T", "T1840C"], "N": ["A31T", "E297D"], "NSs": ["Q5R"]}, "labels": {"aa": "N: A31T, E297D; NSs: Q5R"}}, "children": [{"name": "PP_006W0VA|VARS/22-01|Brazil/2022-12-09", "node_attrs": {"div": 0.132858, "strain": {"value": "PP_006W0VA|VARS/22-01|Brazil/2022-12-09"}, "accession": "PP_006W0VA", "author": {"author": "Amgarten, D.; Dorlass, E.; dos Santos Soares, A. C.; Moreira Salles, A. P.; Takara, A.; da Silva Santos, A.; Oliveira Sartori, B. S.; Petroni, R. C.; Sallum Filho, C. F. C.; Hidal, J. T.; Camargo, L. F. A.; Doi, A.; Rebello Pinho, J. R.", "value": "Amgarten, D.; Dorlass, E.; dos Santos Soares, A. C.; Moreira Salles, A. P.; Takara, A.; da Silva Santos, A.; Oliveira Sartori, B. S.; Petroni, R. C.; Sallum Filho, C. F. C.; Hidal, J. T.; Camargo, L. F. A.; Doi, A.; Rebello Pinho, J. R."}, "length": {"value": 1912}, "date": {"value": "2022-12-09"}, "institution": {"value": "Hospital Israelita Albert Einstein, Varsomics"}, "country": {"value": "Brazil"}, "PPX_accession": {"value": "PP_006W0VA.1", "url": "https://pathoplexus.org/seq/PP_006W0VA.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2023-01-18"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Amgarten et al."}, "INSDC_accession": {"value": "OQ092245.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OQ092245.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["T24A", "A42C", "T61C", "T62A", "C75T", "G99C", "C115T", "T117G", "C125A", "G135T", "G136C", "G138C", "T143A", "G156A", "C216T", "A222G", "C262T", "G312A", "T327G", "C357T", "G369A", "A372G", "A375G", "A378G", "T396C", "T405C", "C413T", "T414G", "C441T", "T465A", "C471T", "C507A", "A508C", "C519T", "T537C", "G558A", "T570C", "C579T", "A582C", "A621C", "A627T", "G633A", "C636T", "A639G", "A657G", "C660T", "A669G", "G672A", "A675G", "C678A", "T693C", "G714T", "T717C", "C723T", "G729C", "G732A", "T735A", "T756C", "G762A", "G796A", "T804A", "G817T", "T834C", "C837T", "G852A", "A864C", "A876G", "T879C", "T885C", "C889T", "C908T", "T909C", "T939C", "C945T", "G990A", "C996T", "T1005A", "A1008T", "G1011A", "C1021T", "C1050T", "A1056T", "T1059C", "C1065T", "A1074T", "A1086T", "A1089G", "G1110A", "C1122T", "A1141C", "G1143A", "A1146T", "A1149G", "T1152C", "A1164G", "G1167T", "C1170T", "G1176A", "C1179T", "C1185T", "G1209A", "G1218T", "T1233C", "G1254A", "A1260G", "T1284C", "G1296A", "T1302C", "T1334C", "G1339C", "A1359T", "C1365T", "C1378A", "C1397-", "C1398-", "A1418T", "T1425C", "T1427C", "A1429C", "T1430G", "A1432-", "A1468T", "A1516G", "A1526C", "G1551A", "G1561A", "T1568G", "T1570A", "T1571G", "T1572G", "T1577G", "C1578T", "A1579G", "G1582A", "T1584C", "A1589T", "G1591T", "A1593T", "T1602A", "T1620C", "T1627A", "T1629A", "T1635-", "T1636-", "A1637-", "-1639T", "A1642T", "T1644C", "A1645T", "T1650A", "G1659-", "T1660-", "A1664T", "G1666A", "G1670-", "T1673G", "G1680T", "T1683G", "-1685T", "-1687G", "-1688G", "C1703T", "-1745G", "-1746C", "G1751T", "T1753A", "T1755-", "C1756-", "T1759C", "T1769A", "T1787C", "C1791A", "T1805G", "A1816-", "C1818T"], "N": ["L7Q", "A28D", "V32L", "V34E", "A124V", "D231E", "A259S", "T289I"], "NSs": ["P2T", "R5L", "W6S", "W8R", "R12K", "S32L", "N34S"]}, "labels": {"aa": "N: L7Q, A28D, V32L, V34E, A124V, D231E, A259S, T289I; NSs: P2T, R5L, W6S, W8R, R12K, S32L, N34S"}}}, {"name": "NODE_0000006", "node_attrs": {"div": 0.0614389, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C306T", "A543G", "A555C", "C579G", "A657C", "G771A", "G891C", "A906G", "C921A", "C978T", "A1020G", "C1062A", "G1098A", "T1206C", "A1275C", "T1399-", "A1400-", "C1403T", "A1530G", "T1562A", "C1612T", "A1817T"], "N": ["T252A"], "NSs": ["T62I"]}, "labels": {"aa": "N: T252A; NSs: T62I"}}, "children": [{"name": "NODE_0000007", "node_attrs": {"div": 0.129464, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T61C", "C172T", "C225T", "A234G", "A240G", "G315A", "G321A", "G330C", "A331C", "G333T", "G369T", "A375G", "G402A", "T414C", "C421T", "A432C", "A447G", "T454C", "A456C", "A501G", "C507T", "T528C", "T549C", "G561A", "T564G", "G573C", "A591T", "G615A", "A627T", "A631C", "A639G", "C654A", "A681G", "T690C", "T696A", "G705A", "T711C", "A750T", "A753G", "G789A", "T798A", "C799T", "C800T", "A801G", "G807A", "C822T", "C831T", "A840G", "C843T", "G849A", "A850C", "T858G", "A864T", "C908T", "G912A", "G924T", "T927C", "T939A", "C942T", "G954T", "T963C", "T981C", "A1017T", "G1023A", "T1026G", "T1038C", "G1083A", "G1101A", "A1113G", "T1119A", "T1135C", "A1140G", "A1141C", "G1158A", "A1200C", "T1257C", "G1263A", "T1287C", "G1293T", "G1299A", "A1341G", "A1345T", "T1350G", "A1352T", "A1355T", "T1356C", "C1397A", "T1427C", "G1433A", "T1436-", "G1437-", "T1439G", "A1440T", "A1441G", "T1449C", "C1450A", "A1472G", "C1476T", "C1479-", "T1480-", "C1504T", "T1511C", "T1517G", "A1532T", "G1551A", "T1571G", "A1576G", "C1578A", "A1579G", "G1582A", "T1585A", "A1586T", "G1592T", "A1594G", "T1595A", "A1597G", "T1602A", "T1620A", "T1627G", "T1628A", "T1629G", "T1631C", "-1633A", "-1634T", "A1638T", "A1641-", "T1649G", "T1654-", "G1666T", "G1674T", "A1677T", "A1686-", "T1689-", "T1690-", "A1691-", "T1696C", "A1711G", "T1719C", "G1721A", "T1769-", "A1777-", "C1791A", "C1794A", "A1815T", "A1816C", "C1840T"], "N": ["P253L", "T289I"], "NSs": ["S35L", "N38S", "Q40R"]}, "labels": {"aa": "N: P253L, T289I; NSs: S35L, N38S, Q40R"}}, "children": [{"name": "PP_006VLUU|Ol22996|nan/XXXX-XX-XX", "node_attrs": {"div": 0.130131, "strain": {"value": "PP_006VLUU|Ol22996|nan/XXXX-XX-XX"}, "accession": "PP_006VLUU", "author": {"author": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C.", "value": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C."}, "length": {"value": 1919}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "University of Nevada, Microbiology"}, "PPX_accession": {"value": "PP_006VLUU.1", "url": "https://pathoplexus.org/seq/PP_006VLUU.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "1997-12-01"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Calderon et al."}, "INSDC_accession": {"value": "AF482715.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF482715.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "mice and others"}}, "branch_attrs": {"mutations": {"nuc": ["G483A", "A1514G", "G1543T", "G1547C", "T1548A", "T1554A", "T1559G", "A1565G", "T1568A", "T1635G", "-1639G", "T1640-"]}}}, {"name": "PP_006VP38|AND Nort|nan/XXXX-XX-XX", "node_attrs": {"div": 0.135022, "strain": {"value": "PP_006VP38|AND Nort|nan/XXXX-XX-XX"}, "accession": "PP_006VP38", "author": {"author": "Gonzalez Della Valle, M.; Edelstein, A.; Miguel, S.; Martinez, V.; Cortez, J.; Cacace, M. L.; Jurgelenas, G.; Sosa Estani, S.; Padula, P.; Gonzalez Della Valle, M. O.; Miguel, S. D. L.; Martinez, V. P.; Cortes, J.; Cacace, M.; Padula, P. J.", "value": "Gonzalez Della Valle, M.; Edelstein, A.; Miguel, S.; Martinez, V.; Cortez, J.; Cacace, M. L.; Jurgelenas, G.; Sosa Estani, S.; Padula, P.; Gonzalez Della Valle, M. O.; Miguel, S. D. L.; Martinez, V. P.; Cortes, J.; Cacace, M.; Padula, P. J."}, "length": {"value": 1921}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "Instituto Nacional de Enfermedades Infecciosas, A.N.L.I.S. Dr. Carlos G. Malbran, Departamento de Virologia"}, "PPX_accession": {"value": "PP_006VP38.1", "url": "https://pathoplexus.org/seq/PP_006VP38.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2001-02-19"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Gonzalez Della Valle et al."}, "INSDC_accession": {"value": "AF325966.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF325966.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "Chacoan pygmy rice rat"}}, "branch_attrs": {"mutations": {"nuc": ["G312A", "A318G", "T693C", "C760T", "C945T", "C1151A", "C1242T", "A1353T", "G1354A", "C1356A", "T1533C", "A1546T", "T1550A", "T1555A", "T1560A", "A1562G", "G1566A", "T1567G", "T1569A", "-1641G", "T1673C", "C1756A", "C1800T"], "N": ["S370Y"]}, "labels": {"aa": "N: S370Y"}}}]}, {"name": "NODE_0000008", "node_attrs": {"div": 0.0796628, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G66A", "C328T", "A401G", "C459T", "A478C", "A540G", "T552C", "A630C", "T786C", "G855A", "C933T", "C945A", "T948C", "A1008C", "C1042T", "T1044A", "T1119C", "C1308T", "A1357G", "T1538A", "T1570G", "T1697A", "G1715T", "T1761C", "C1818A", "T1834C"], "N": ["K120R", "D274E"]}, "labels": {"aa": "N: K120R, D274E"}}, "children": [{"name": "NODE_0000009", "node_attrs": {"div": 0.102166, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G231A", "G339C", "A387G", "C441T", "A450G", "T453C", "A456G", "C468T", "T474A", "A492G", "A514C", "G558A", "C678A", "A708C", "C760T", "C774T", "C792A", "T819C", "G849A", "G990A", "G1011T", "G1083A", "A1137G", "C1161T", "T1224C", "-1657T", "-1658T"], "NSs": ["G37D"]}, "labels": {"aa": "NSs: G37D"}}, "children": [{"name": "PP_006W2BB|Guachipas 2024|Argentina/2024-XX-XX", "node_attrs": {"div": 0.173419, "strain": {"value": "PP_006W2BB|Guachipas 2024|Argentina/2024-XX-XX"}, "accession": "PP_006W2BB", "author": {"author": "Bellomo, C. M.; Kehl, S.; Alonso, D. O.; Lopez, W.; Cassinelli, F.; Coelho, R. M.; Bravo, G.; Aguirre, S.; Dib, M.; Periolo, N.; Toscano, C.; Gil, J.; Garcia Campos, F.; Ferro, I.; Martinez, V. P.; Kehl, S. D.", "value": "Bellomo, C. M.; Kehl, S.; Alonso, D. O.; Lopez, W.; Cassinelli, F.; Coelho, R. M.; Bravo, G.; Aguirre, S.; Dib, M.; Periolo, N.; Toscano, C.; Gil, J.; Garcia Campos, F.; Ferro, I.; Martinez, V. P.; Kehl, S. D."}, "division": {"value": "Guachipas, Salta"}, "length": {"value": 1253}, "date": {"value": "2024-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W2BB.1", "url": "https://pathoplexus.org/seq/PP_006W2BB.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-09-10"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Bellomo et al."}, "INSDC_accession": {"value": "PQ181488.2", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PQ181488.2"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["G33A", "C50A", "T117A", "A129G", "G135A", "G156A", "C168T", "C172T", "C244T", "A258G", "C310T", "A318G", "G321A", "T327G", "G333A", "T342C", "C357T", "T366C", "A378G", "T381C", "T408C", "C421T", "A423G", "A438G", "T441A", "C444T", "T465C", "G477A", "C478A", "G483A", "T486A", "C495T", "G504A", "A510G", "G522A", "G543A", "C552A", "C556A", "A621C", "C636T", "A637C", "T690C", "T711C", "C720T", "G729T", "A744G", "A753G", "C767G", "C780T", "G789A", "G795A", "T798A", "G817T", "A828G", "C831T", "C843T", "A850C", "G852A", "T858A", "T879C", "T885G", "C891T", "G906A", "A918C", "C922T", "A966C", "T1014C", "G1023T", "G1036T", "A1056G", "G1077A", "T1092A", "C1125T", "G1128A", "C1134T", "A1141C", "A1149G", "T1152C", "C1170T", "A1173G", "C1191T", "A1197C", "A1200G", "G1209A", "A1212G", "G1218A", "C1227T", "T1230C", "T1236A"], "N": ["T3N", "A242G", "A259S", "A332S"], "NSs": ["K3R", "R5Q", "R12K", "A16V", "K46R"]}, "labels": {"aa": "N: T3N, A242G, A259S, A332S; NSs: K3R, R5Q, R12K, A16V, K46R"}}}, {"name": "NODE_0000010", "node_attrs": {"div": 0.12675, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A219G", "G312A", "T327C", "T384A", "G403T", "C417T", "A480G", "C571T", "A582C", "G633A", "C654T", "A675G", "G714A", "A777T", "G807A", "C838T", "A864G", "A876G", "C942T", "A960G", "C984T", "G1020A", "T1029A", "T1038C", "T1188C", "C1206G", "C1242T", "A1305C", "C1360T", "C1398-", "T1425G", "A1468G", "T1512A", "A1539G", "T1569A", "T1577G", "A1589T", "T1595A", "T1602G", "A1632-", "G1659A", "G1674A", "T1696A", "T1714A", "C1768T", "T1769C", "A1777C"], "N": ["A121S"], "NSs": ["E33G"]}, "labels": {"aa": "N: A121S; NSs: E33G"}}, "children": [{"name": "NODE_0000011", "node_attrs": {"div": 0.147704, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G330A", "A426C", "A435C", "G540A", "T564C", "G672T", "G705A", "G729A", "T756C", "T781C", "C786A", "C822T", "T825C", "C837T", "C843T", "T858G", "C1021T", "T1059C", "A1071T", "A1086G", "C1195T", "G1209A", "T1335G", "T1346A", "G1351T", "C1365T", "-1401T", "T1404C", "A1431G", "G1527T", "G1542T", "G1543-", "G1551A", "T1580G", "-1639T", "T1640C", "T1644A", "T1660A", "G1670A", "A1672-", "A1678G", "G1680A", "T1683C", "A1684T", "-1685T", "-1687G", "-1688G", "C1791A", "A1815C"]}}, "children": [{"name": "PP_006VR7Y|Neembucu|Paraguay/XXXX-XX-XX", "node_attrs": {"div": 0.191928, "strain": {"value": "PP_006VR7Y|Neembucu|Paraguay/XXXX-XX-XX"}, "accession": "PP_006VR7Y", "author": {"author": "Chu, Y. K.; Milligan, B.; Owen, R. D.; Goodin, D. G.; Jonsson, C. B.; Chu, Y.-K.", "value": "Chu, Y. K.; Milligan, B.; Owen, R. D.; Goodin, D. G.; Jonsson, C. B.; Chu, Y.-K."}, "length": {"value": 1931}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "Southern Research Institute, Viral Biochemistry"}, "country": {"value": "Paraguay"}, "PPX_accession": {"value": "PP_006VR7Y.1", "url": "https://pathoplexus.org/seq/PP_006VR7Y.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2006-01-25"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Chu et al."}, "INSDC_accession": {"value": "DQ345763.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/DQ345763.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "Chacoan pygmy rice rat"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["T72C", "A90G", "A272G", "T342C", "A384G", "T393C", "T396C", "G411A", "G450A", "G456A", "C472A", "A510G", "A534T", "G579A", "C630T", "T634C", "C636T", "C657A", "T672C", "A681G", "A683G", "C687T", "T690C", "T711C", "T735C", "A750T", "T774C", "A783G", "A786G", "A828G", "A850C", "G858A", "G876A", "C888T", "T909C", "T927C", "G960A", "T981C", "C996T", "C1008T", "C1032T", "T1071C", "G1077A", "A1113G", "C1119T", "G1137A", "A1149G", "T1152C", "A1182C", "A1197G", "A1200T", "G1206A", "T1236G", "A1272G", "C1275T", "G1296A", "T1318C", "A1331T", "T1334C", "G1335A", "T1338A", "A1342G", "T1350C", "C1378A", "A1379T", "A1440G", "A1481G", "A1526C", "A1531G", "A1532T", "T1533A", "A1538G", "T1545A", "T1549C", "T1550C", "C1578A", "G1580A", "G1582T", "T1588G", "G1592A", "A1608G", "A1611G", "T1629G", "-1634G", "A1645G", "T1646G", "G1648T", "T1651A", "A1652G", "A1653T", "A1669T", "T1671A", "-1672T", "T1673C", "A1705G", "G1734A", "C1756T", "T1768C", "C1769A", "T1787C", "C1797T", "C1802T", "T1805A", "C1815T", "T1867A"], "N": ["K77R", "F198L", "N214S"], "NSs": ["N51D"]}, "labels": {"aa": "N: K77R, F198L, N214S; NSs: N51D"}}}, {"name": "PP_006VQ45|Oc22531|nan/XXXX-XX-XX", "node_attrs": {"div": 0.179281, "strain": {"value": "PP_006VQ45|Oc22531|nan/XXXX-XX-XX"}, "accession": "PP_006VQ45", "author": {"author": "Bohlman, M. C.; Morzunov, S. P.; Meissner, J.; Taylor, M. B.; Ishibashi, K.; Rowe, J.; Levis, S.; Enria, D.; St Jeor, S. C.; St. Jeor, S. C.", "value": "Bohlman, M. C.; Morzunov, S. P.; Meissner, J.; Taylor, M. B.; Ishibashi, K.; Rowe, J.; Levis, S.; Enria, D.; St Jeor, S. C.; St. Jeor, S. C."}, "length": {"value": 1933}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "University of Nevada, Reno, Microbiology"}, "PPX_accession": {"value": "PP_006VQ45.1", "url": "https://pathoplexus.org/seq/PP_006VQ45.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2002-02-27"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Bohlman et al."}, "INSDC_accession": {"value": "AF482713.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF482713.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "Chacoan pygmy rice rat"}}, "branch_attrs": {"mutations": {"nuc": ["T117C", "A213G", "C244T", "T441C", "A474C", "G480T", "G492A", "C498T", "C507T", "C519T", "T570C", "A597G", "C630G", "A633G", "T654C", "C708T", "G732A", "C759T", "G846A", "A903G", "C922T", "A930G", "T1005C", "C1041T", "A1044G", "C1065T", "A1083T", "G1101A", "G1110A", "A1173G", "C1185T", "C1227T", "T1257C", "T1266C", "A1328G", "C1333T", "A1341T", "T1349A", "T1351C", "A1381-", "T1428C", "T1460A", "C1462T", "G1468A", "C1483T", "A1512C", "G1530A", "G1535T", "G1536T", "G1541C", "T1542C", "T1552G", "T1555-", "T1556-", "G1558A", "G1577T", "C1578T", "G1582A", "G1583C", "A1586G", "G1591A", "A1607C", "T1621C", "-1632A", "A1645-", "-1655C", "T1676C", "G1679T", "T1682C", "A1711G", "C1767T", "A1790C", "C1794A"], "NSs": ["N31S"]}, "labels": {"aa": "NSs: N31S"}}}]}, {"name": "NODE_0000012", "node_attrs": {"div": 0.139872, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C345T", "T408C", "A474G", "C507A", "A588C", "G615A", "T717C", "G789A", "G852A", "A855G", "T1042C", "C1050T", "C1104G", "G1218A", "C1397T", "T1567A", "T1628C", "T1629A", "-1634G", "A1641C", "-1655A", "A1659T", "A1674T", "A1686-"]}}, "children": [{"name": "PP_006W29F|URU_1|Uruguay/1996-XX-XX", "node_attrs": {"div": 0.18179, "strain": {"value": "PP_006W29F|URU_1|Uruguay/1996-XX-XX"}, "accession": "PP_006W29F", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "length": {"value": 1934}, "date": {"value": "1996-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Uruguay"}, "PPX_accession": {"value": "PP_006W29F.1", "url": "https://pathoplexus.org/seq/PP_006W29F.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-09-23"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "PP504848.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP504848.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["A28G", "G33T", "A129G", "C225T", "C244T", "G369T", "A378G", "G387A", "T393C", "T417C", "A426G", "T465C", "T468C", "C478T", "C489T", "C495T", "A510G", "T525C", "T528C", "C546T", "T571C", "C582T", "A597G", "G618A", "A642G", "A681G", "A714G", "C720T", "T735C", "A792T", "A810G", "T858C", "T861C", "T894C", "C897T", "C922T", "T927C", "T984C", "A990G", "C1008T", "C1021T", "A1056G", "A1071T", "G1101A", "C1102T", "G1107A", "C1119T", "G1137A", "A1146G", "G1176A", "C1188T", "G1206A", "T1266A", "A1272G", "C1275T", "T1281C", "C1305T", "T1318C", "A1320G", "A1341G", "C1344G", "A1345C", "A1348T", "T1350G", "A1352T", "A1355G", "A1359G", "C1364T", "-1398C", "T1510G", "A1516G", "G1529A", "G1530T", "A1531T", "T1533G", "A1537T", "G1539A", "G1543T", "T1554A", "T1560C", "G1577A", "T1588G", "T1644A", "A1645G", "-1656A", "T1657G", "T1658G", "T1662A", "A1664C", "G1666-", "T1673C", "T1674C", "T1675C", "A1677T", "T1689-", "T1690-", "A1691-", "A1738G", "C1756T", "C1777A", "A1792T", "T1804A", "A1815T", "A1816C", "A1818C", "C1834T", "C1840T"], "N": ["R146W"], "NSs": ["K3R", "S35L"]}, "labels": {"aa": "N: R146W; NSs: K3R, S35L"}}}, {"name": "NODE_0000013", "node_attrs": {"div": 0.169059, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T202C", "T328C", "G333A", "G369A", "G402A", "A423T", "A447C", "C519T", "G522A", "G579A", "G672C", "G675A", "A678T", "T798A", "T834C", "A840G", "G846A", "A850C", "C873T", "T879C", "T939A", "C1038T", "A1062G", "A1098G", "G1110A", "G1158A", "C1170T", "C1191T", "A1212G", "C1221T", "C1227T", "T1284C", "A1311G", "G1339T", "G1357T", "A1379T", "-1401T", "C1462T", "G1541A", "G1542A", "G1551T", "T1552C", "T1572G", "A1586G", "G1591A", "A1593T", "A1595G", "T1630A", "T1649G", "T1650-", "T1651A", "A1652T", "-1656G", "G1680T", "C1761T", "C1763T", "C1794A"]}}, "children": [{"name": "PP_006W100|Lechiguanas|Argentina/2022-XX-XX", "node_attrs": {"div": 0.181763, "strain": {"value": "PP_006W100|Lechiguanas|Argentina/2022-XX-XX"}, "accession": "PP_006W100", "author": {"author": "Bellomo, C. M.; Alonso, D. O.; Martinez, V. P.; Sanchez Loria, J.; Campos, J.", "value": "Bellomo, C. M.; Alonso, D. O.; Martinez, V. P.; Sanchez Loria, J.; Campos, J."}, "length": {"value": 1938}, "date": {"value": "2022-XX-XX"}, "institution": {"value": "INEI-ANLIS \"Dr C. G. Malbran\", Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W100.1", "url": "https://pathoplexus.org/seq/PP_006W100.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-07-01"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Bellomo et al."}, "INSDC_accession": {"value": "OR890439.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR890439.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "yellow pygmy rice rat"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["A71G", "C216T", "A438G", "G618A", "A681G", "G876A", "T909C", "T969C", "T997C", "C1008T", "C1054A", "T1059C", "A1182C", "G1209A", "T1233C", "T1242C", "T1335G", "T1428C", "A1467G", "T1510C", "G1530T", "G1535T", "G1536C", "A1541T", "A1542C", "G1543A", "T1545-", "T1549C", "T1550C", "T1551C", "C1552A", "T1556-", "A1653T", "G1670A", "A1672T", "T1673A", "A1678T", "G1679T", "T1680C", "T1683C", "-1685T", "-1686T", "-1687T", "-1688T", "A1714C"], "N": ["N10S"], "NSs": ["S32L"]}, "labels": {"aa": "N: N10S; NSs: S32L"}}}, {"name": "NODE_0000014", "node_attrs": {"div": 0.181393, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C360T", "T414A", "A426G", "T454C", "A513C", "G567A", "C588T", "C657T", "C660T", "C897T", "T900C", "C1032T", "C1041T", "A1140G", "A1272G", "T1404C", "A1461G", "G1468T", "T1507C", "A1526C", "G1527T", "A1532T", "G1534A", "A1537G", "A1538G", "G1539T", "T1554A", "T1559C", "T1560C", "T1612C", "T1671C", "T1675C", "A1677T", "A1684-"]}}, "children": [{"name": "NODE_0000015", "node_attrs": {"div": 0.182349, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A1056G", "G1062A"]}}, "children": [{"name": "PP_006W1D8|ER19-SP1693|Argentina/2019-XX-XX", "node_attrs": {"div": 0.193358, "strain": {"value": "PP_006W1D8|ER19-SP1693|Argentina/2019-XX-XX"}, "accession": "PP_006W1D8", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "division": {"value": "Entre Rios"}, "length": {"value": 1925}, "date": {"value": "2019-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W1D8.1", "url": "https://pathoplexus.org/seq/PP_006W1D8.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-09-06"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OR908896.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908896.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["C447T", "T465C", "A627T", "C672T", "G732A", "T942C", "C996T", "T997C", "C1008A", "G1137A", "T1227C", "G1278A", "T1287C", "A1317G", "T1335-", "T1339A", "A1342T", "G1347C", "T1349C", "T1356A", "T1357A", "T1360G", "C1404T", "G1602A", "C1769T"]}}}, {"name": "PP_006VLSY|Of22819|nan/XXXX-XX-XX", "node_attrs": {"div": 0.191006, "strain": {"value": "PP_006VLSY|Of22819|nan/XXXX-XX-XX"}, "accession": "PP_006VLSY", "author": {"author": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C.", "value": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C."}, "length": {"value": 1938}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "University of Nevada, Microbiology"}, "PPX_accession": {"value": "PP_006VLSY.1", "url": "https://pathoplexus.org/seq/PP_006VLSY.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "1997-12-01"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Calderon et al."}, "INSDC_accession": {"value": "AF482714.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF482714.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "yellow pygmy rice rat"}}, "branch_attrs": {"mutations": {"nuc": ["C339T", "C408T", "G456A", "A531T", "C636T", "T760C", "C879A", "C922T", "G954A", "T984C", "A1164G", "T1428C", "G1461T", "T1551C", "C1552A", "A1554G", "T1556-", "A1645G", "A1696G", "T1719C", "T1833C", "C1834T"], "N": ["D279E"]}, "labels": {"aa": "N: D279E"}}}]}, {"name": "NODE_0000016", "node_attrs": {"div": 0.18427, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A240C", "A534T", "C1305T"], "NSs": ["Q40P"]}, "labels": {"aa": "NSs: Q40P"}}, "children": [{"name": "PP_006W1Y3|15631_S|Argentina|1998|Argentina/1998-XX-XX", "node_attrs": {"div": 0.192018, "strain": {"value": "PP_006W1Y3|15631_S|Argentina|1998|Argentina/1998-XX-XX"}, "accession": "PP_006W1Y3", "author": {"author": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J.", "value": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J."}, "length": {"value": 2122}, "date": {"value": "1998-XX-XX"}, "institution": {"value": "Centers for Disease Control and Prevention, Viral Special Pathogens Branch"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W1Y3.1", "url": "https://pathoplexus.org/seq/PP_006W1Y3.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-04-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Shedroff et al."}, "INSDC_accession": {"value": "PP058740.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP058740.1"}, "outbreak": {"value": "unassigned"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["G179A", "C310T", "C472T", "T534C", "C552T", "G795A", "A1017G", "T1050C", "T1191C", "T1281C", "T1356G", "C1392T", "C1559T", "T1803C"], "N": ["S46N", "R144W"], "NSs": ["V20I"]}, "labels": {"aa": "N: S46N, R144W; NSs: V20I"}}}, {"name": "NODE_0000017", "node_attrs": {"div": 0.185115, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T306C"], "NSs": ["I62T"]}, "labels": {"aa": "NSs: I62T"}}, "children": [{"name": "PP_006W1F4|BA18-LD1633|Argentina/2018-XX-XX", "node_attrs": {"div": 0.192163, "strain": {"value": "PP_006W1F4|BA18-LD1633|Argentina/2018-XX-XX"}, "accession": "PP_006W1F4", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "division": {"value": "Buenos Aires"}, "length": {"value": 1889}, "date": {"value": "2018-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W1F4.1", "url": "https://pathoplexus.org/seq/PP_006W1F4.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-09-06"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OR908898.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908898.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["C453T", "C454T", "C478A", "T537C", "T549C", "T571C", "A753G", "G960A", "A1218G", "C1526A", "T1527G", "G1530T", "T1532A", "A1534G", "G1535T", "G1536T", "G1537A", "G1538A", "T1539G", "A1541C", "A1542C", "G1543A", "T1545-", "A1714C", "C1791A", "C1834T"]}}}, {"name": "PP_006W1E6|BA18-RR1620|Argentina/2018-XX-XX", "node_attrs": {"div": 0.190593, "strain": {"value": "PP_006W1E6|BA18-RR1620|Argentina/2018-XX-XX"}, "accession": "PP_006W1E6", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "division": {"value": "Buenos Aires"}, "length": {"value": 1911}, "date": {"value": "2018-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W1E6.1", "url": "https://pathoplexus.org/seq/PP_006W1E6.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-09-06"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OR908897.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908897.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["C216T", "A318G", "C339T", "T363C", "G426A", "T588C", "T1276C", "T1349G", "T1350A", "T1356A", "T1357A", "A1554G", "T1739C", "A1794C"], "NSs": ["S32L"]}, "labels": {"aa": "NSs: S32L"}}}]}]}]}]}]}]}]}, {"name": "NODE_0000018", "node_attrs": {"div": 0.149131, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G33A", "A234G", "A240C", "C310T", "T327A", "A331C", "G333T", "C345G", "T384C", "G411A", "A423T", "A432T", "A435T", "A438C", "A447T", "T454C", "C471T", "G504A", "C546T", "C555T", "C556A", "T564C", "G567A", "C571T", "G573A", "T612A", "G618A", "C630T", "C678T", "T693C", "C699G", "G729T", "G732A", "T735C", "C759T", "C780T", "A783G", "C792T", "G795A", "C813T", "T825C", "C831A", "C838T", "A840G", "T858C", "T861C", "A867T", "A870G", "A882T", "T885G", "C889T", "C891A", "C897T", "G912A", "A915G", "T939C", "A975G", "C996A", "A999G", "T1014C", "A1017T", "G1023A", "T1029A", "C1041T", "A1044G", "G1047A", "A1056G", "G1077A", "C1104T", "A1131T", "T1135C", "A1137C", "A1140G", "G1143A", "A1146G", "T1152A", "G1158A", "C1170T", "A1173G", "T1188C", "A1197C", "T1248C", "G1254A", "T1257G", "A1260G", "C1275T", "A1320G", "T1334C", "T1335A", "A1340T", "T1343C", "C1344A", "A1345G", "G1347A", "T1349C", "A1352G", "A1359T", "C1365T", "T1373A", "-1399T", "C1402-", "T1403-", "A1418G", "A1473-", "A1492G", "T1511C", "A1526C", "G1527-", "G1528-", "G1529-", "G1530-", "A1531-", "A1532-", "G1534T", "A1537G", "A1538G", "A1539T", "T1544A", "G1547A", "T1549G", "T1550G", "T1555A", "G1561C", "T1572A", "A1576G", "A1579C", "G1592T", "T1612A", "-1655T", "T1660-", "G1661-", "A1669C", "G1670A", "T1671A", "A1672T", "G1679T", "A1684T", "-1685T", "-1687G", "-1688G", "T1707C", "A1711T", "T1712A", "A1713C", "T1715C", "C1716T", "C1717-", "T1755C", "C1756T", "A1792T", "T1805A", "T1831A", "T1870C"], "NSs": ["N38S", "Q40P"]}, "labels": {"aa": "NSs: N38S, Q40P"}}, "children": [{"name": "NODE_0000019", "node_attrs": {"div": 0.15745, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A33T", "A90G", "C367T", "A675G", "T717C", "T768G", "C1161T", "T1236C", "C1324T", "G1354T", "T1356G", "T1423C", "T1630A", "A1632T", "-1633G", "-1634A", "T1636-", "-1639T", "A1645-", "T1651A", "A1652T", "T1654G", "T1655A", "G1659-", "G1674A"]}}, "children": [{"name": "PP_006W19G|BA10-GJ1165|Argentina/2010-XX-XX", "node_attrs": {"div": 0.157451, "strain": {"value": "PP_006W19G|BA10-GJ1165|Argentina/2010-XX-XX"}, "accession": "PP_006W19G", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "division": {"value": "Buenos Aires"}, "length": {"value": 1838}, "date": {"value": "2010-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W19G.1", "url": "https://pathoplexus.org/seq/PP_006W19G.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-09-06"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OR908892.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908892.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["-1745G", "-1746C", "G1751A", "T1754G", "T1756C", "G1757A", "T1759A", "A1760-", "C1761-", "A1762-", "T1764G", "A1766G", "A1778G", "T1784G", "C1795G", "T1798A", "C1799A", "C1801T", "T1808A", "A1815C", "A1820G", "C1822A", "A1831G", "T1833G", "G1835A", "T1841A"]}}}, {"name": "PP_006W1AE|BA10-OE1169|Argentina/2010-XX-XX", "node_attrs": {"div": 0.157451, "strain": {"value": "PP_006W1AE|BA10-OE1169|Argentina/2010-XX-XX"}, "accession": "PP_006W1AE", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "division": {"value": "Buenos Aires"}, "length": {"value": 1852}, "date": {"value": "2010-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W1AE.1", "url": "https://pathoplexus.org/seq/PP_006W1AE.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-09-06"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OR908893.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908893.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000020", "node_attrs": {"div": 0.158874, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C244T", "G321A", "A378G", "C438T", "C468T", "A510G", "G516A", "C519T", "T528C", "T549C", "A831G", "C1032T", "T1239C", "T1276C", "G1299A", "G1570A", "A1626T", "T1627G", "T1628C", "A1637G", "T1646G", "A1647C", "G1648A", "-1656G", "-1657T", "-1658A", "-1660A", "C1669T"]}}, "children": [{"name": "PP_006W17L|BA16_LJC1557|Argentina/2002-XX-XX", "node_attrs": {"div": 0.163639, "strain": {"value": "PP_006W17L|BA16_LJC1557|Argentina/2002-XX-XX"}, "accession": "PP_006W17L", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "division": {"value": "Buenos Aires"}, "length": {"value": 1877}, "date": {"value": "2002-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W17L.1", "url": "https://pathoplexus.org/seq/PP_006W17L.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-09-06"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OR908890.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908890.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["G345A", "C441T", "G561A", "G990A", "G994A", "C1185A", "C1504T", "C1561T", "T1592C"], "N": ["A318T"]}, "labels": {"aa": "N: A318T"}}}, {"name": "NODE_0000021", "node_attrs": {"div": 0.160021, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A642G", "T1092C"]}}, "children": [{"name": "NODE_0000022", "node_attrs": {"div": 0.164258, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C564T", "A732G", "G831A", "T882C", "T1281C", "G1566A"]}}, "children": [{"name": "NODE_0000023", "node_attrs": {"div": 0.165029, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T1230C"]}}, "children": [{"name": "PP_006W16N|BA02_ROM495|Argentina/2002-XX-XX", "node_attrs": {"div": 0.165805, "strain": {"value": "PP_006W16N|BA02_ROM495|Argentina/2002-XX-XX"}, "accession": "PP_006W16N", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "division": {"value": "Buenos Aires"}, "length": {"value": 1847}, "date": {"value": "2002-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W16N.1", "url": "https://pathoplexus.org/seq/PP_006W16N.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-09-06"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OR908889.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908889.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["T447C", "C1834T"]}}}, {"name": "NODE_0000024", "node_attrs": {"div": 0.16503, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W15Q|BA02_AOA490|Argentina/2002-XX-XX", "node_attrs": {"div": 0.165031, "strain": {"value": "PP_006W15Q|BA02_AOA490|Argentina/2002-XX-XX"}, "accession": "PP_006W15Q", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "division": {"value": "Buenos Aires"}, "length": {"value": 1887}, "date": {"value": "2002-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W15Q.1", "url": "https://pathoplexus.org/seq/PP_006W15Q.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-09-06"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OR908888.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908888.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W13U|BA02_RJF487|Argentina/2002-XX-XX", "node_attrs": {"div": 0.165031, "strain": {"value": "PP_006W13U|BA02_RJF487|Argentina/2002-XX-XX"}, "accession": "PP_006W13U", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "division": {"value": "Buenos Aires"}, "length": {"value": 1794}, "date": {"value": "2002-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W13U.1", "url": "https://pathoplexus.org/seq/PP_006W13U.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-09-06"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OR908886.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908886.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000025", "node_attrs": {"div": 0.166598, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G510A", "G1176A", "T1318C", "C1390T"]}}, "children": [{"name": "PP_006W11Y|BA02_VVN481|Argentina/2002-XX-XX", "node_attrs": {"div": 0.168151, "strain": {"value": "PP_006W11Y|BA02_VVN481|Argentina/2002-XX-XX"}, "accession": "PP_006W11Y", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "division": {"value": "Buenos Aires"}, "length": {"value": 1886}, "date": {"value": "2002-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W11Y.1", "url": "https://pathoplexus.org/seq/PP_006W11Y.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-09-06"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OR908884.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908884.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["T690C", "C1165T"]}}}, {"name": "NODE_0000026", "node_attrs": {"div": 0.166599, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W14S|BA02_VO483|Argentina/2002-XX-XX", "node_attrs": {"div": 0.1666, "strain": {"value": "PP_006W14S|BA02_VO483|Argentina/2002-XX-XX"}, "accession": "PP_006W14S", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "division": {"value": "Buenos Aires"}, "length": {"value": 1887}, "date": {"value": "2002-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W14S.1", "url": "https://pathoplexus.org/seq/PP_006W14S.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-09-06"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OR908887.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908887.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W12W|BA02_VVD480|Argentina/2002-XX-XX", "node_attrs": {"div": 0.167375, "strain": {"value": "PP_006W12W|BA02_VVD480|Argentina/2002-XX-XX"}, "accession": "PP_006W12W", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "division": {"value": "Buenos Aires"}, "length": {"value": 1881}, "date": {"value": "2002-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W12W.1", "url": "https://pathoplexus.org/seq/PP_006W12W.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-09-06"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OR908885.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908885.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["T663C"]}}}]}]}]}, {"name": "NODE_0000027", "node_attrs": {"div": 0.161647, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C489T", "T546C"]}}, "children": [{"name": "NODE_0000028", "node_attrs": {"div": 0.162824, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T117C", "A1570C", "C1628T", "G1637-", "A1638-"]}}, "children": [{"name": "PP_006W18J|BA17_SD1583|Argentina/2002-XX-XX", "node_attrs": {"div": 0.163604, "strain": {"value": "PP_006W18J|BA17_SD1583|Argentina/2002-XX-XX"}, "accession": "PP_006W18J", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "division": {"value": "Buenos Aires"}, "length": {"value": 1836}, "date": {"value": "2002-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W18J.1", "url": "https://pathoplexus.org/seq/PP_006W18J.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-09-06"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OR908891.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908891.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["C1242T", "T1626A", "G1627T", "T1630A", "A1632C", "-1633G", "-1634A", "T1636-", "T1640-", "A1775G", "T1853G", "T1854A"]}}}, {"name": "NODE_0000029", "node_attrs": {"div": 0.167501, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A33T", "A372G", "A387G", "G924A", "A1095G", "T1230C", "G1320A", "G1394A", "G1411A", "T1635-", "-1637C", "-1638G", "-1639A", "C1834T"]}}, "children": [{"name": "PP_006W1CA|BA11-IM1254|Argentina/2011-XX-XX", "node_attrs": {"div": 0.167502, "strain": {"value": "PP_006W1CA|BA11-IM1254|Argentina/2011-XX-XX"}, "accession": "PP_006W1CA", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "division": {"value": "Buenos Aires"}, "length": {"value": 1844}, "date": {"value": "2011-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W1CA.1", "url": "https://pathoplexus.org/seq/PP_006W1CA.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-09-06"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OR908895.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908895.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W1BC|BA11-MH1249|Argentina/2011-XX-XX", "node_attrs": {"div": 0.167502, "strain": {"value": "PP_006W1BC|BA11-MH1249|Argentina/2011-XX-XX"}, "accession": "PP_006W1BC", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "division": {"value": "Buenos Aires"}, "length": {"value": 1843}, "date": {"value": "2011-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W1BC.1", "url": "https://pathoplexus.org/seq/PP_006W1BC.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-09-06"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OR908894.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908894.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000030", "node_attrs": {"div": 0.165146, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G339A", "A765G", "A921C", "C1092T", "C1206T"]}}, "children": [{"name": "PP_006W0Z2|BA02_SMM484|Argentina/2002-XX-XX", "node_attrs": {"div": 0.165147, "strain": {"value": "PP_006W0Z2|BA02_SMM484|Argentina/2002-XX-XX"}, "accession": "PP_006W0Z2", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "division": {"value": "Buenos Aires"}, "length": {"value": 1881}, "date": {"value": "2002-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W0Z2.1", "url": "https://pathoplexus.org/seq/PP_006W0Z2.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-12-31"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OR875982.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR875982.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000031", "node_attrs": {"div": 0.165147, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W28H|BA02_SMM478|Argentina/2002-XX-XX", "node_attrs": {"div": 0.165147, "strain": {"value": "PP_006W28H|BA02_SMM478|Argentina/2002-XX-XX"}, "accession": "PP_006W28H", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "division": {"value": "Buenos Aires"}, "length": {"value": 1848}, "date": {"value": "2002-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W28H.1", "url": "https://pathoplexus.org/seq/PP_006W28H.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-09-23"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "PP504847.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP504847.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["A1846C", "T1848G", "G1849T", "T1852C"]}}}, {"name": "PP_006W0UC|Arg-h484|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165147, "strain": {"value": "PP_006W0UC|Arg-h484|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0UC", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "length": {"value": 1881}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W0UC.1", "url": "https://pathoplexus.org/seq/PP_006W0UC.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2023-10-10"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555730.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555730.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000032", "node_attrs": {"div": 0.0408368, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A129G", "G156C", "G333A", "A387G", "A420C", "C421T", "G483A", "A510G", "A603T", "T663A", "A669G", "G729A", "C831A", "G846A", "G852A", "A870G", "C873T", "T894A", "A918T", "C942A", "G954C", "G990A", "A999G", "G1077A", "T1135C", "C1242T", "T1257A", "A1260G", "A1305C", "C1324T"], "N": ["E38D"], "NSs": ["K3R", "R12T"]}, "labels": {"aa": "N: E38D; NSs: K3R, R12T"}}, "children": [{"name": "NODE_0000033", "node_attrs": {"div": 0.116188, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C50A", "G66A", "A90G", "G135A", "C172T", "A183G", "C184A", "T202C", "G231A", "C244A", "A324T", "C357T", "T363C", "T393A", "T405A", "T414C", "A426T", "T435C", "C441A", "C445T", "A450G", "T453A", "A456G", "C468T", "T474A", "C534T", "A540G", "C546A", "A555T", "G558A", "C579A", "A594C", "T603C", "G609A", "C678A", "A708C", "T717C", "C720T", "A750T", "G762A", "C767A", "A777T", "T786A", "C792T", "G795A", "G796T", "T798A", "T819A", "C822T", "C843T", "T858A", "A864T", "T867A", "T885A", "T909A", "A960T", "C984T", "T1005A", "A1008T", "G1011T", "A1017T", "A1020G", "C1021T", "T1044C", "T1059C", "A1095G", "C1102T", "C1122T", "C1134T", "A1137T", "A1140G", "A1164G", "G1167T", "C1170T", "G1176A", "A1182C", "C1185T", "C1191T", "C1195T", "A1197G", "A1200C", "T1206G", "G1218A", "T1224C", "T1233C", "T1236A", "A1272G", "T1273G", "G1296A", "G1323A", "A1329G"], "N": ["T3N", "L68M", "A242D", "T252S", "E297D", "S411A"], "NSs": ["D21G", "G37D"]}, "labels": {"aa": "N: T3N, L68M, A242D, T252S, E297D, S411A; NSs: D21G, G37D"}}, "children": [{"name": "PP_006VX06|769|Peru/2010-XX-XX", "node_attrs": {"div": 0.166775, "strain": {"value": "PP_006VX06|769|Peru/2010-XX-XX"}, "accession": "PP_006VX06", "author": {"author": "Razuri, H.; Tokarz, R.; Ghersi, B. M.; Salmon-Mulanovich, G.; Guezala, M. C.; Albujar, C.; Mendoza, A. P.; Tinoco, Y. O.; Cruz, C.; Silva, M.; Vasquez, A.; Pacheco, V.; Stroher, U.; Guerrero, L. W.; Cannon, D.; Nichol, S. T.; Hirschberg, D. L.; Lipkin, W. I.; Bausch, D. G.; Montgomery, J. M.", "value": "Razuri, H.; Tokarz, R.; Ghersi, B. M.; Salmon-Mulanovich, G.; Guezala, M. C.; Albujar, C.; Mendoza, A. P.; Tinoco, Y. O.; Cruz, C.; Silva, M.; Vasquez, A.; Pacheco, V.; Stroher, U.; Guerrero, L. W.; Cannon, D.; Nichol, S. T.; Hirschberg, D. L.; Lipkin, W. I.; Bausch, D. G.; Montgomery, J. M."}, "length": {"value": 1068}, "date": {"value": "2010-XX-XX"}, "institution": {"value": "Columbia University, Center for Infection and Immunity"}, "country": {"value": "Peru"}, "PPX_accession": {"value": "PP_006VX06.1", "url": "https://pathoplexus.org/seq/PP_006VX06.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2014-03-16"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Razuri et al."}, "INSDC_accession": {"value": "KF581134.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/KF581134.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "bristly mouse"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["A63G", "T72C", "A111G", "C188G", "A219G", "A222G", "C345T", "C346T", "G348A", "G369A", "A401G", "C417T", "T429C", "A447G", "T454C", "C489G", "C495T", "C507T", "C519T", "G522A", "T528C", "A543G", "A546G", "G561A", "A564T", "G573A", "A579G", "A588G", "A630C", "T645A", "A648T", "T651C", "C660T", "T711C", "C723T", "G747A", "T756C", "G763T", "T768A", "T781C", "T792G", "G828A", "A858G", "A867G", "A885G", "C889T", "G891A", "A906G", "G912A", "G924A", "T927C", "T1017C"], "N": ["A49G", "K120R", "A241S", "D242E"], "NSs": ["Q23E", "E33G", "N34S"]}, "labels": {"aa": "N: A49G, K120R, A241S, D242E; NSs: Q23E, E33G, N34S"}}}, {"name": "NODE_0000034", "node_attrs": {"div": 0.159826, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T61C", "G132A", "G142A", "A240G", "C354T", "A372G", "A378G", "T384C", "T396C", "G402A", "G403T", "C444T", "C498T", "A531G", "G567A", "C654T", "T684C", "C687T", "T690C", "T696C", "G732A", "T735C", "A744G", "A745C", "A783G", "G807A", "G849A", "G855A", "A876G", "T879C", "C933T", "T1014C", "T1026G", "C1032T", "T1038A", "G1047A", "C1050T", "T1089A", "G1101A", "A1113G", "C1125T"], "N": ["V34M", "A121S"], "NSs": ["R4K", "Q40R"]}, "labels": {"aa": "N: V34M, A121S; NSs: R4K, Q40R"}}, "children": [{"name": "PP_006VVXD|FVB799|Bolivia/2009-XX-XX", "node_attrs": {"div": 0.161206, "strain": {"value": "PP_006VVXD|FVB799|Bolivia/2009-XX-XX"}, "accession": "PP_006VVXD", "author": {"author": "Cruz, C. D.; Forshey, B. M.; Vallejo, E.; Agudo, R.; Vargas, J.; Blazes, D. L.; Guevara, C.; Laguna-Torres, V. A.; Halsey, E. S.; Kochel, T. J.; Laguna, V. A.; Guevara, C. L.", "value": "Cruz, C. D.; Forshey, B. M.; Vallejo, E.; Agudo, R.; Vargas, J.; Blazes, D. L.; Guevara, C.; Laguna-Torres, V. A.; Halsey, E. S.; Kochel, T. J.; Laguna, V. A.; Guevara, C. L."}, "length": {"value": 1287}, "date": {"value": "2009-XX-XX"}, "institution": {"value": "NAMRU-6, Virology"}, "country": {"value": "Bolivia"}, "PPX_accession": {"value": "PP_006VVXD.1", "url": "https://pathoplexus.org/seq/PP_006VVXD.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2011-09-21"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Cruz et al."}, "INSDC_accession": {"value": "JF750417.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/JF750417.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["A66G", "G129A"], "NSs": ["R3K"]}, "labels": {"aa": "NSs: R3K"}}}, {"name": "NODE_0000035", "node_attrs": {"div": 0.160789, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A597G"]}}, "children": [{"name": "PP_006VVZ9|FVB554|Bolivia/2008-XX-XX", "node_attrs": {"div": 0.161565, "strain": {"value": "PP_006VVZ9|FVB554|Bolivia/2008-XX-XX"}, "accession": "PP_006VVZ9", "author": {"author": "Cruz, C. D.; Forshey, B. M.; Vallejo, E.; Agudo, R.; Vargas, J.; Blazes, D. L.; Guevara, C.; Laguna-Torres, V. A.; Halsey, E. S.; Kochel, T. J.; Laguna, V. A.; Guevara, C. L.", "value": "Cruz, C. D.; Forshey, B. M.; Vallejo, E.; Agudo, R.; Vargas, J.; Blazes, D. L.; Guevara, C.; Laguna-Torres, V. A.; Halsey, E. S.; Kochel, T. J.; Laguna, V. A.; Guevara, C. L."}, "length": {"value": 1287}, "date": {"value": "2008-XX-XX"}, "institution": {"value": "NAMRU-6, Virology"}, "country": {"value": "Bolivia"}, "PPX_accession": {"value": "PP_006VVZ9.1", "url": "https://pathoplexus.org/seq/PP_006VVZ9.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2011-09-21"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Cruz et al."}, "INSDC_accession": {"value": "JF750419.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/JF750419.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["A447G"]}}}, {"name": "PP_006VVYB|FVB640|Bolivia/2008-XX-XX", "node_attrs": {"div": 0.162356, "strain": {"value": "PP_006VVYB|FVB640|Bolivia/2008-XX-XX"}, "accession": "PP_006VVYB", "author": {"author": "Cruz, C. D.; Forshey, B. M.; Vallejo, E.; Agudo, R.; Vargas, J.; Blazes, D. L.; Guevara, C.; Laguna-Torres, V. A.; Halsey, E. S.; Kochel, T. J.; Laguna, V. A.; Guevara, C. L.", "value": "Cruz, C. D.; Forshey, B. M.; Vallejo, E.; Agudo, R.; Vargas, J.; Blazes, D. L.; Guevara, C.; Laguna-Torres, V. A.; Halsey, E. S.; Kochel, T. J.; Laguna, V. A.; Guevara, C. L."}, "length": {"value": 1287}, "date": {"value": "2008-XX-XX"}, "institution": {"value": "NAMRU-6, Virology"}, "country": {"value": "Bolivia"}, "PPX_accession": {"value": "PP_006VVYB.1", "url": "https://pathoplexus.org/seq/PP_006VVYB.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2011-09-21"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Cruz et al."}, "INSDC_accession": {"value": "JF750418.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/JF750418.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["C384G", "T693C"]}}}]}]}]}, {"name": "NODE_0000036", "node_attrs": {"div": 0.117685, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T72C", "C262T", "G321A", "C354T", "C360A", "C366T", "C367T", "A378G", "T384A", "T408A", "G411A", "T414A", "A426G", "A438G", "T453C", "T465G", "C468A", "A486T", "C489G", "G492A", "C519T", "A531T", "G558T", "G561A", "G567A", "T570C", "G573T", "G618A", "A621C", "A624G", "A631C", "C636T", "A639G", "A648T", "A657T", "G672C", "C687A", "T690A", "C699A", "G705A", "G714A", "A718G", "A744T", "A745C", "T756G", "T768A", "C774T", "C792A", "C797T", "C799G", "A801C", "T804A", "G807A", "A810C", "G817T", "G829A", "C830T", "A831G", "T840G", "G855A", "T858C", "A882T", "G883A", "C888T", "C889T", "A915T", "C922T", "C933A", "T939A", "A960G", "A975T", "A979C", "A987T", "A993T", "T1014A", "G1023T", "T1029A", "G1036T", "A1054C", "A1056T", "A1074T", "G1083A", "A1086G", "G1104A", "T1119C", "A1173G", "G1209A", "C1221T", "T1248C", "G1254A", "T1266A", "A1275T", "T1276C", "T1302C", "T1318C", "A1320T", "T1356A", "-1401T", "C1419G", "A1440T", "G1442A", "T1447G", "C1450A", "A1451G", "A1473T", "-1500A", "T1510C", "-1514G", "T1538G", "A1539G", "-1634G", "A1645G", "-1656G", "-1685T", "-1687G", "-1688G", "T1740G", "-1745G", "-1746C", "G1748T", "T1759A", "A1760T", "A1762G", "T1804A", "A1816C", "A1830C"], "N": ["S226G", "E234D", "D238E", "T252V", "P253A", "A259S", "A263M", "D274E", "V281I", "A332S"]}, "labels": {"aa": "N: S226G, E234D, D238E, T252V, P253A, A259S, A263M, D274E, V281I, A332S"}}, "children": [{"name": "NODE_0000037", "node_attrs": {"div": 0.137716, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A63G", "A120G", "G135A", "C225T", "C244T", "C306T", "G312A", "C357T", "A450G", "T576C", "A597G", "G633A", "C660T", "C759T", "T798C", "C837T", "T885C", "A906G", "T909C", "A933G", "A1017G", "C1032T", "G1110A", "G1158A", "T1224C", "A1257C", "T1269A", "T1281C", "A1329G", "T1436C", "G1437A", "A1450G", "C1462T", "T1480C", "G1582T", "A1589G", "A1607T", "T1707C", "G1721A", "A1777G", "T1787C", "A1792T"], "NSs": ["S35L", "T62I"]}, "labels": {"aa": "NSs: S35L, T62I"}}, "children": [{"name": "PP_006W0D9|Chile-9717869|Chile/1997-XX-XX", "node_attrs": {"div": 0.138492, "strain": {"value": "PP_006W0D9|Chile-9717869|Chile/1997-XX-XX"}, "accession": "PP_006W0D9", "author": {"author": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D.", "value": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D."}, "length": {"value": 1871}, "date": {"value": "1997-XX-XX"}, "institution": {"value": "Public Health Agency of Canada, Special Pathogens"}, "country": {"value": "Chile"}, "PPX_accession": {"value": "PP_006W0D9.1", "url": "https://pathoplexus.org/seq/PP_006W0D9.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2021-02-27"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Warner et al."}, "INSDC_accession": {"value": "MT956622.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MT956622.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "mice and others"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["T1C", "G179A", "A1871T"], "N": ["S46N"], "NSs": ["V20I"]}, "labels": {"aa": "N: S46N; NSs: V20I"}}}, {"name": "NODE_0000038", "node_attrs": {"div": 0.137717, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VQGF|PP_006VQGF|nan/XXXX-XX-XX", "node_attrs": {"div": 0.137718, "strain": {"value": "PP_006VQGF|PP_006VQGF|nan/XXXX-XX-XX"}, "accession": "PP_006VQGF", "author": {"author": "Hall, T. A.; Sampath, R.; Eshoo, M. W.", "value": "Hall, T. A.; Sampath, R.; Eshoo, M. W."}, "length": {"value": 1871}, "date": {"value": "XXXX-XX-XX"}, "PPX_accession": {"value": "PP_006VQGF.1", "url": "https://pathoplexus.org/seq/PP_006VQGF.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2008-09-26"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Hall et al."}, "INSDC_accession": {"value": "DL138931.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/DL138931.1"}, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000039", "node_attrs": {"div": 0.137718, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0E7|Chile-9717869|nan/XXXX-XX-XX", "node_attrs": {"div": 0.137718, "strain": {"value": "PP_006W0E7|Chile-9717869|nan/XXXX-XX-XX"}, "accession": "PP_006W0E7", "author": {"author": "Bohlman, M. C.; Borucki, M.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; St Jeor, S.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B.", "value": "Bohlman, M. C.; Borucki, M.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; St Jeor, S.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B."}, "length": {"value": 1871}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "National Center for Biotechnology Information, NIH"}, "PPX_accession": {"value": "PP_006W0E7.1", "url": "https://pathoplexus.org/seq/PP_006W0E7.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2000-10-10"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Bohlman et al."}, "INSDC_accession": {"value": "NC_003466.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/NC_003466.1"}, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000040", "node_attrs": {"div": 0.137718, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W1PM|PP_006W1PM|nan/XXXX-XX-XX", "node_attrs": {"div": 0.137718, "strain": {"value": "PP_006W1PM|PP_006W1PM|nan/XXXX-XX-XX"}, "accession": "PP_006W1PM", "author": {"author": "Gimenez, C. A.; Farias, M. E.; Repizo, G. D.; Curti, L. A.; Goytia, F.; Bonnet, F. A. P.", "value": "Gimenez, C. A.; Farias, M. E.; Repizo, G. D.; Curti, L. A.; Goytia, F.; Bonnet, F. A. P."}, "length": {"value": 1871}, "date": {"value": "XXXX-XX-XX"}, "PPX_accession": {"value": "PP_006W1PM.1", "url": "https://pathoplexus.org/seq/PP_006W1PM.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2025-02-28"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Gimenez et al."}, "INSDC_accession": {"value": "PG081425.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PG081425.1"}, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VNZG|Chile-9717869|nan/XXXX-XX-XX", "node_attrs": {"div": 0.137718, "strain": {"value": "PP_006VNZG|Chile-9717869|nan/XXXX-XX-XX"}, "accession": "PP_006VNZG", "author": {"author": "Bohlman, M. C.; Borucki, M. K.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; Rowe, J. E.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B.", "value": "Bohlman, M. C.; Borucki, M. K.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; Rowe, J. E.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B."}, "length": {"value": 1871}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "University of Nevada-Reno, Microbiology"}, "PPX_accession": {"value": "PP_006VNZG.1", "url": "https://pathoplexus.org/seq/PP_006VNZG.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2000-10-10"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Bohlman et al."}, "INSDC_accession": {"value": "AF291702.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF291702.1"}, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000041", "node_attrs": {"div": 0.145194, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G66A", "A219G", "G315A", "A318G", "C417T", "C444A", "T454C", "C459T", "G477A", "G504A", "C600T", "C678T", "T735C", "A753G", "G756A", "A783G", "T825C", "T879C", "C897T", "A972G", "T1038C", "C1041T", "T1074C", "C1125T", "A1131T", "C1161T", "C1185T", "T1188C", "T1275C", "T1284C", "T1287C", "T1343G", "C1344T", "T1423C", "T1443-", "A1526C", "T1549C", "G1551A", "T1572G", "A1573-", "A1576C", "T1596C", "A1641G", "T1646C", "G1648T", "T1681C", "T1682C", "T1696C", "A1734G", "A1776T", "C1794A", "C1830T"], "NSs": ["Q5R", "E33G"]}, "labels": {"aa": "NSs: Q5R, E33G"}}, "children": [{"name": "NODE_0000042", "node_attrs": {"div": 0.153207, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A483G", "A699G", "G849A", "G891A", "A990G", "A1083G", "A1104G", "G1176A", "A1197T", "T1344G", "T1449C", "A1499G", "T1513C", "G1661T", "C1738T"]}}, "children": [{"name": "NODE_0000043", "node_attrs": {"div": 0.16071, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T117C", "A450G", "A630G", "C801T", "T888C", "G972A", "G1086A", "G1173A", "G1278A", "T1320C", "T1533G", "C1612A"]}}, "children": [{"name": "PP_006VZ6S|NRC-5/18_06/01/2018|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.163322, "strain": {"value": "PP_006VZ6S|NRC-5/18_06/01/2018|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ6S", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1857}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZ6S.1", "url": "https://pathoplexus.org/seq/PP_006VZ6S.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258227.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258227.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["C72T", "T531C", "C1032T", "G1344A", "C1799A"]}}}, {"name": "NODE_0000044", "node_attrs": {"div": 0.161985, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G699A", "A1029G"]}}, "children": [{"name": "PP_006VLDR|AH-1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.161986, "strain": {"value": "PP_006VLDR|AH-1|nan/XXXX-XX-XX"}, "accession": "PP_006VLDR", "author": {"author": "Lopez, N.; Padula, P.; Rossi, C.; Miguel, S.; Edelstein, A.; Ramirez, E.; Franze-Fernandez, M. T.", "value": "Lopez, N.; Padula, P.; Rossi, C.; Miguel, S.; Edelstein, A.; Ramirez, E.; Franze-Fernandez, M. T."}, "length": {"value": 1876}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "CONICET, CEVAN"}, "PPX_accession": {"value": "PP_006VLDR.1", "url": "https://pathoplexus.org/seq/PP_006VLDR.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "1997-09-03"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Lopez et al."}, "INSDC_accession": {"value": "AF004660.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF004660.1"}, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C1862T", "A1863C"]}}}, {"name": "PP_006VP2A|AH-1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.161986, "strain": {"value": "PP_006VP2A|AH-1|nan/XXXX-XX-XX"}, "accession": "PP_006VP2A", "author": {"author": "Padula, P. J.; Sanchez, A. J.; Edelstein, A.; Nichol, S. T.", "value": "Padula, P. J.; Sanchez, A. J.; Edelstein, A.; Nichol, S. T."}, "length": {"value": 1876}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "Instituto Nacional de Enfermedades Infecciosas, A.N.L.I.S. Dr. Carlos G. Malbran, Departamento de Virologia"}, "PPX_accession": {"value": "PP_006VP2A.1", "url": "https://pathoplexus.org/seq/PP_006VP2A.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2001-03-01"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Padula et al."}, "INSDC_accession": {"value": "AF324902.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF324902.1"}, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000045", "node_attrs": {"div": 0.156112, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T363C", "A543G", "A564G"]}}, "children": [{"name": "PP_006VZ3Y|NRC-2/97_06/01/1996|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.166374, "strain": {"value": "PP_006VZ3Y|NRC-2/97_06/01/1996|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ3Y", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1852}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZ3Y.1", "url": "https://pathoplexus.org/seq/PP_006VZ3Y.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258224.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258224.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["T327C", "G330T", "A492G", "C570T", "G633A", "C672T", "C720A", "C723T", "A855G", "C1032T", "T1041C", "G1158A", "A1257G", "G1347A", "A1432G", "G1435T", "G1464A", "C1513T", "T1548C", "C1549T", "C1576T", "A1590G", "C1737T", "T1743A"]}}}, {"name": "NODE_0000046", "node_attrs": {"div": 0.156918, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T657C"]}}, "children": [{"name": "NODE_0000047", "node_attrs": {"div": 0.165433, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G378A", "A450G", "C495T", "T537C", "T798C", "C813T", "C825T", "C858T", "G1083A", "T1221C", "C1287T", "C1378A", "C1479A", "C1526T", "A1607G", "G1659A", "T1660C", "C1756T"]}}, "children": [{"name": "PP_006VXAL|ANDV LS-CH-2016 ex Chile|Switzerland/2016-12-26", "node_attrs": {"div": 0.17011, "strain": {"value": "PP_006VXAL|ANDV LS-CH-2016 ex Chile|Switzerland/2016-12-26"}, "accession": "PP_006VXAL", "author": {"author": "Beuret, C. M.; Siegrist, D.", "value": "Beuret, C. M.; Siegrist, D."}, "length": {"value": 1874}, "date": {"value": "2016-12-26"}, "institution": {"value": "Spiez Laboratory, Virology"}, "country": {"value": "Switzerland"}, "PPX_accession": {"value": "PP_006VXAL.1", "url": "https://pathoplexus.org/seq/PP_006VXAL.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2018-01-29"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Beuret et al."}, "INSDC_accession": {"value": "KY659432.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/KY659432.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "Europe"}}, "branch_attrs": {"mutations": {"nuc": ["T117C", "C134G", "A140T", "T584C", "G585A", "T781C", "T1798A"], "N": ["A31G", "E33V", "M181T"], "NSs": ["R5G", "R7W"]}, "labels": {"aa": "N: A31G, E33V, M181T; NSs: R5G, R7W"}}}, {"name": "NODE_0000048", "node_attrs": {"div": 0.165434, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0W8|ANDV-CH-LS-2022|Switzerland/2022-XX-XX", "node_attrs": {"div": 0.165435, "strain": {"value": "PP_006W0W8|ANDV-CH-LS-2022|Switzerland/2022-XX-XX"}, "accession": "PP_006W0W8", "author": {"author": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N.", "value": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N."}, "length": {"value": 1760}, "date": {"value": "2022-XX-XX"}, "institution": {"value": "Spiez Laboratory, Biology Department"}, "country": {"value": "Switzerland"}, "PPX_accession": {"value": "PP_006W0W8.1", "url": "https://pathoplexus.org/seq/PP_006W0W8.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2023-10-02"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Zuest et al."}, "INSDC_accession": {"value": "OR405520.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR405520.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "Europe"}}, "branch_attrs": {"mutations": {"nuc": ["G1493T", "T1496-", "T1497-", "A1498-", "G1499-", "A1500-", "G1501-", "G1502-", "G1503-", "C1504-", "C1505-", "A1506-", "C1507-", "T1508-", "A1509-", "C1510-", "A1511-", "T1512-", "C1513-", "G1514-", "T1515-", "A1516-", "T1517-", "T1518-", "T1519-", "G1520-", "C1521-", "A1522-", "C1523-", "T1524-", "A1525-", "T1526-", "G1527-", "G1528-"]}}}, {"name": "PP_006W0X6|ANDV-CH-LS-2016|Switzerland/2016-XX-XX", "node_attrs": {"div": 0.165435, "strain": {"value": "PP_006W0X6|ANDV-CH-LS-2016|Switzerland/2016-XX-XX"}, "accession": "PP_006W0X6", "author": {"author": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N.", "value": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N."}, "length": {"value": 1793}, "date": {"value": "2016-XX-XX"}, "institution": {"value": "Spiez Laboratory, Biology Department"}, "country": {"value": "Switzerland"}, "PPX_accession": {"value": "PP_006W0X6.1", "url": "https://pathoplexus.org/seq/PP_006W0X6.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2023-10-02"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Zuest et al."}, "INSDC_accession": {"value": "OR405525.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR405525.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "Europe"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000049", "node_attrs": {"div": 0.158473, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C660T", "T781C"]}}, "children": [{"name": "NODE_0000050", "node_attrs": {"div": 0.168772, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G179A", "G231A", "C328T", "A615G", "C621T", "T711C", "A729G", "C837T", "C843T", "T882C", "G912A", "T1056C", "C1122T", "T1552C", "G1605T", "T1643C"], "N": ["S46N"], "NSs": ["V20I", "G37D"]}, "labels": {"aa": "N: S46N; NSs: V20I, G37D"}}, "children": [{"name": "PP_006VQHC|CHI-7913|Chile/XXXX-XX-XX", "node_attrs": {"div": 0.169548, "strain": {"value": "PP_006VQHC|CHI-7913|Chile/XXXX-XX-XX"}, "accession": "PP_006VQHC", "author": {"author": "Tischler, N. D.; Fernandez, J.; Muller, I.; Martinez, R.; Galeno, H.; Villagra, E.; Mora, J.; Ramirez, E.; Rosemblatt, M.; Valenzuela, P. D.; Mueller, I.; Valenzuela, P. D. T.", "value": "Tischler, N. D.; Fernandez, J.; Muller, I.; Martinez, R.; Galeno, H.; Villagra, E.; Mora, J.; Ramirez, E.; Rosemblatt, M.; Valenzuela, P. D.; Mueller, I.; Valenzuela, P. D. T."}, "length": {"value": 1802}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "Fundacion Ciencia para la Vida, Departamento de Desarrollo e Investigacion"}, "country": {"value": "Chile"}, "PPX_accession": {"value": "PP_006VQHC.1", "url": "https://pathoplexus.org/seq/PP_006VQHC.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2003-05-01"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Tischler et al."}, "INSDC_accession": {"value": "AY228237.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AY228237.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["G33T", "A484G", "T1776C"], "N": ["T148A"]}, "labels": {"aa": "N: T148A"}}}, {"name": "NODE_0000051", "node_attrs": {"div": 0.168773, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000052", "node_attrs": {"div": 0.168774, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2HY|CHI-7913|Chile/1999-XX-XX", "node_attrs": {"div": 0.168775, "strain": {"value": "PP_006W2HY|CHI-7913|Chile/1999-XX-XX"}, "accession": "PP_006W2HY", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "length": {"value": 1872}, "date": {"value": "1999-XX-XX"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "country": {"value": "Chile"}, "PPX_accession": {"value": "PP_006W2HY.1", "url": "https://pathoplexus.org/seq/PP_006W2HY.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2025-11-04"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Barrera et al."}, "INSDC_accession": {"value": "PV808470.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808470.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["G1487T"]}}}, {"name": "PP_006W0CB|CHI-7913|Chile/1999-XX-XX", "node_attrs": {"div": 0.168775, "strain": {"value": "PP_006W0CB|CHI-7913|Chile/1999-XX-XX"}, "accession": "PP_006W0CB", "author": {"author": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D.", "value": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D."}, "length": {"value": 1802}, "date": {"value": "1999-XX-XX"}, "institution": {"value": "Public Health Agency of Canada, Special Pathogens"}, "country": {"value": "Chile"}, "PPX_accession": {"value": "PP_006W0CB.1", "url": "https://pathoplexus.org/seq/PP_006W0CB.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2021-02-27"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Warner et al."}, "INSDC_accession": {"value": "MT956618.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MT956618.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000053", "node_attrs": {"div": 0.172664, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A63G", "A66G", "A1329G", "G1330T", "T1331A"]}}, "children": [{"name": "PP_006VR0C|PP_006VR0C|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172665, "strain": {"value": "PP_006VR0C|PP_006VR0C|nan/XXXX-XX-XX"}, "accession": "PP_006VR0C", "author": {"author": "Nguyen, S. H.; Pichuantes, S.", "value": "Nguyen, S. H.; Pichuantes, S."}, "length": {"value": 1290}, "date": {"value": "XXXX-XX-XX"}, "PPX_accession": {"value": "PP_006VR0C.1", "url": "https://pathoplexus.org/seq/PP_006VR0C.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2008-02-21"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Nguyen et al."}, "INSDC_accession": {"value": "DI163829.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/DI163829.1"}, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000054", "node_attrs": {"div": 0.172665, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VVWF|PP_006VVWF|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172665, "strain": {"value": "PP_006VVWF|PP_006VVWF|nan/XXXX-XX-XX"}, "accession": "PP_006VVWF", "author": {"author": "Nguyen, S. H.; Pichuantes, S.", "value": "Nguyen, S. H.; Pichuantes, S."}, "length": {"value": 1290}, "date": {"value": "XXXX-XX-XX"}, "PPX_accession": {"value": "PP_006VVWF.1", "url": "https://pathoplexus.org/seq/PP_006VVWF.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2013-02-13"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Nguyen et al."}, "INSDC_accession": {"value": "HV984420.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/HV984420.1"}, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VR28|PP_006VR28|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172665, "strain": {"value": "PP_006VR28|PP_006VR28|nan/XXXX-XX-XX"}, "accession": "PP_006VR28", "author": {"author": "Pichuantesu, S.; Nguyen, S. H.", "value": "Pichuantesu, S.; Nguyen, S. H."}, "length": {"value": 1290}, "date": {"value": "XXXX-XX-XX"}, "PPX_accession": {"value": "PP_006VR28.1", "url": "https://pathoplexus.org/seq/PP_006VR28.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2008-09-26"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Pichuantesu et al."}, "INSDC_accession": {"value": "DL139703.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/DL139703.1"}, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000055", "node_attrs": {"div": 0.164525, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T202C", "C363T", "G378A", "G465A", "A477G", "A561G", "T1116C", "C1119T", "A1336G", "T1436C", "G1451A", "C1576T", "G1659A"]}}, "children": [{"name": "NODE_0000056", "node_attrs": {"div": 0.167804, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C357T", "T549C", "G624A", "A1176G", "A1586G"]}}, "children": [{"name": "NODE_0000057", "node_attrs": {"div": 0.17144, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T354G", "T882C", "C1050T", "C1188T", "A1468G", "C1767T"]}}, "children": [{"name": "PP_006VZ5U|NRC-4/18_06/01/2018|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.171441, "strain": {"value": "PP_006VZ5U|NRC-4/18_06/01/2018|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ5U", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1860}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZ5U.1", "url": "https://pathoplexus.org/seq/PP_006VZ5U.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258226.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258226.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZ4W|NRC-3/18_06/01/1997|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.171441, "strain": {"value": "PP_006VZ4W|NRC-3/18_06/01/1997|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ4W", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1857}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZ4W.1", "url": "https://pathoplexus.org/seq/PP_006VZ4W.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258225.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258225.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000058", "node_attrs": {"div": 0.177478, "outbreak": {"value": "2026-cruise-ship"}}, "branch_attrs": {"mutations": {"nuc": ["G312A", "C328T", "A378G", "A627G", "A630G", "T660C", "T927C", "A930G", "A996G", "T1059C", "G1143A", "G1293T", "G1296A", "A1451G", "G1622A", "A1710C"]}, "labels": {"outbreak": "2026-cruise-ship"}}, "children": [{"name": "PP_006WANE|PP_006WANE|South Africa/2026-05-02", "node_attrs": {"div": 0.178256, "strain": {"value": "PP_006WANE|PP_006WANE|South Africa/2026-05-02"}, "accession": "PP_006WANE", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "length": {"value": 1744}, "date": {"value": "2026-05-02"}, "institution": {"value": "National Institute of Communicable Diseases"}, "country": {"value": "South Africa"}, "PPX_accession": {"value": "PP_006WANE.1", "url": "https://pathoplexus.org/seq/PP_006WANE.1"}, "restrictedUntil": {"value": "2027-05-11"}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "date_released": {"value": "2026-05-11"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Weyer et al."}, "outbreak": {"value": "2026-cruise-ship"}, "host": {"value": "human"}, "region": {"value": "Africa"}}, "branch_attrs": {"mutations": {"nuc": ["A18G", "A21G", "G28A", "A56G"], "N": ["Q5R"]}, "labels": {"aa": "N: Q5R"}}}, {"name": "NODE_0000059", "node_attrs": {"div": 0.177479, "outbreak": {"value": "2026-cruise-ship"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W3U9|PP_006W3U9|Netherlands/2026-05-06", "node_attrs": {"div": 0.17748, "strain": {"value": "PP_006W3U9|PP_006W3U9|Netherlands/2026-05-06"}, "accession": "PP_006W3U9", "author": {"author": "Oude Munnink, B. B.; Nieuwenhuijsse, D.; van der Boom, S.; Zaeck, L.; Boter, M.; Cassidy, H.; Schuele, L.; Molenkamp, R.; van der Eijk, A.; GeurtsvanKessel, C.; Koopmans, M.", "value": "Oude Munnink, B. B.; Nieuwenhuijsse, D.; van der Boom, S.; Zaeck, L.; Boter, M.; Cassidy, H.; Schuele, L.; Molenkamp, R.; van der Eijk, A.; GeurtsvanKessel, C.; Koopmans, M."}, "length": {"value": 1807}, "date": {"value": "2026-05-06"}, "institution": {"value": "ErasmusMC"}, "country": {"value": "Netherlands"}, "PPX_accession": {"value": "PP_006W3U9.1", "url": "https://pathoplexus.org/seq/PP_006W3U9.1"}, "restrictedUntil": {"value": "2027-05-10"}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "date_released": {"value": "2026-05-10"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Oude Munnink et al."}, "outbreak": {"value": "2026-cruise-ship"}, "host": {"value": "human"}, "region": {"value": "Europe"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000060", "node_attrs": {"div": 0.17748, "outbreak": {"value": "2026-cruise-ship"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W6RC|PP_006W6RC|Netherlands/2026-05-03", "node_attrs": {"div": 0.177481, "strain": {"value": "PP_006W6RC|PP_006W6RC|Netherlands/2026-05-03"}, "accession": "PP_006W6RC", "author": {"author": "Diagne, Moussa Moise; Sankhe, Safietou; Ndiaye, Ndeye Awa; Kane, Mouhamed; Diop, Seynabou M. B. S.; Seye, Seynabou; Fall, Gamou", "value": "Diagne, Moussa Moise; Sankhe, Safietou; Ndiaye, Ndeye Awa; Kane, Mouhamed; Diop, Seynabou M. B. S.; Seye, Seynabou; Fall, Gamou"}, "length": {"value": 1829}, "date": {"value": "2026-05-03"}, "country": {"value": "Netherlands"}, "PPX_accession": {"value": "PP_006W6RC.1", "url": "https://pathoplexus.org/seq/PP_006W6RC.1"}, "restrictedUntil": {"value": "2027-05-11"}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "date_released": {"value": "2026-05-11"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Diagne et al."}, "outbreak": {"value": "2026-cruise-ship"}, "host": {"value": "human"}, "region": {"value": "Europe"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W5U7|PP_006W5U7|Switzerland/2026-05-04", "node_attrs": {"div": 0.177481, "strain": {"value": "PP_006W5U7|PP_006W5U7|Switzerland/2026-05-04"}, "accession": "PP_006W5U7", "author": {"author": "Bloemberg, Guido; Chudzinski, Valentin; Cordey, Samuel; Huber, Michael; Laubscher, Florian; P\u00e9rez-Rodr\u00edguez, Francisco-Javier; Pichler, Ian; Schibler, Manuel; Zingg, Walter; Thomasson, Valentine; Ziltener, Gabriela; Eckerle, Isabella", "value": "Bloemberg, Guido; Chudzinski, Valentin; Cordey, Samuel; Huber, Michael; Laubscher, Florian; P\u00e9rez-Rodr\u00edguez, Francisco-Javier; Pichler, Ian; Schibler, Manuel; Zingg, Walter; Thomasson, Valentine; Ziltener, Gabriela; Eckerle, Isabella"}, "length": {"value": 1860}, "date": {"value": "2026-05-04"}, "institution": {"value": "University of Zurich, Zurich, Switzerland; University Hospitals of Zurich, Zurich Switzerland; University Hospitals of Geneva, Geneva, Switzerland"}, "country": {"value": "Switzerland"}, "PPX_accession": {"value": "PP_006W5U7.3", "url": "https://pathoplexus.org/seq/PP_006W5U7.3"}, "restrictedUntil": {"value": "2027-05-10"}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "date_released": {"value": "2026-05-10"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Bloemberg et al."}, "outbreak": {"value": "2026-cruise-ship"}, "host": {"value": "human"}, "region": {"value": "Europe"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000061", "node_attrs": {"div": 0.170805, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T367C", "C453T", "G564A", "G828A", "A930G", "G972A", "G990A", "G1083A", "C1333T", "C1526T", "T1830C"]}}, "children": [{"name": "NODE_0000062", "node_attrs": {"div": 0.17375, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C225T", "T354C", "C858T", "C1116T", "G1344A", "A1500C", "G1666A"], "NSs": ["S35L"]}, "labels": {"aa": "NSs: S35L"}}, "children": [{"name": "PP_006W2KU|CHI-Hu13724_P2|Chile/2024-07-30", "node_attrs": {"div": 0.174527, "strain": {"value": "PP_006W2KU|CHI-Hu13724_P2|Chile/2024-07-30"}, "accession": "PP_006W2KU", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "length": {"value": 1861}, "date": {"value": "2024-07-30"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "country": {"value": "Chile"}, "PPX_accession": {"value": "PP_006W2KU.1", "url": "https://pathoplexus.org/seq/PP_006W2KU.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2025-11-04"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Barrera et al."}, "INSDC_accession": {"value": "PV808476.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808476.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["G179A"], "N": ["S46N"], "NSs": ["V20I"]}, "labels": {"aa": "N: S46N; NSs: V20I"}}}, {"name": "NODE_0000063", "node_attrs": {"div": 0.173751, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2G1|137|Chile/2024-06-27", "node_attrs": {"div": 0.173752, "strain": {"value": "PP_006W2G1|137|Chile/2024-06-27"}, "accession": "PP_006W2G1", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "division": {"value": "Los Rios CL"}, "length": {"value": 1865}, "date": {"value": "2024-06-27"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "country": {"value": "Chile"}, "PPX_accession": {"value": "PP_006W2G1.1", "url": "https://pathoplexus.org/seq/PP_006W2G1.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2025-11-04"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Barrera et al."}, "INSDC_accession": {"value": "PV808467.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808467.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000064", "node_attrs": {"div": 0.173752, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2JW|CHI-Hu13724_P1|Chile/2024-07-24", "node_attrs": {"div": 0.173752, "strain": {"value": "PP_006W2JW|CHI-Hu13724_P1|Chile/2024-07-24"}, "accession": "PP_006W2JW", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "length": {"value": 1869}, "date": {"value": "2024-07-24"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "country": {"value": "Chile"}, "PPX_accession": {"value": "PP_006W2JW.1", "url": "https://pathoplexus.org/seq/PP_006W2JW.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2025-11-04"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Barrera et al."}, "INSDC_accession": {"value": "PV808473.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808473.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W2F3|136|Chile/2024-06-27", "node_attrs": {"div": 0.173752, "strain": {"value": "PP_006W2F3|136|Chile/2024-06-27"}, "accession": "PP_006W2F3", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "division": {"value": "Los Rios CL"}, "length": {"value": 1870}, "date": {"value": "2024-06-27"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "country": {"value": "Chile"}, "PPX_accession": {"value": "PP_006W2F3.1", "url": "https://pathoplexus.org/seq/PP_006W2F3.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2025-11-04"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Barrera et al."}, "INSDC_accession": {"value": "PV796316.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV796316.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000065", "node_attrs": {"div": 0.172528, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T417C", "G870A", "T1744C", "A1792G"]}}, "children": [{"name": "PP_006W0SG|Andes/ARG_p19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.173305, "strain": {"value": "PP_006W0SG|Andes/ARG_p19|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0SG", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "length": {"value": 1873}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W0SG.1", "url": "https://pathoplexus.org/seq/PP_006W0SG.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2023-10-10"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555722.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555722.1"}, "outbreak": {"value": "unassigned"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["G103A", "G1487T"], "N": ["A21T"]}, "labels": {"aa": "N: A21T"}}}, {"name": "NODE_0000066", "node_attrs": {"div": 0.173304, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A57G"]}}, "children": [{"name": "NODE_0000067", "node_attrs": {"div": 0.174081, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G179A"], "N": ["S46N"], "NSs": ["V20I"]}, "labels": {"aa": "N: S46N; NSs: V20I"}}, "children": [{"name": "PP_006W0TE|Andes/ARG-M.a.|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.174082, "strain": {"value": "PP_006W0TE|Andes/ARG-M.a.|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0TE", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "length": {"value": 1868}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W0TE.1", "url": "https://pathoplexus.org/seq/PP_006W0TE.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2023-10-10"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555728.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555728.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "Syrian golden hamster; Syrian golden hamsters; Syrian hamster; golden hamster"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0RJ|Andes/ARG_p9|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.174082, "strain": {"value": "PP_006W0RJ|Andes/ARG_p9|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0RJ", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "length": {"value": 1872}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W0RJ.1", "url": "https://pathoplexus.org/seq/PP_006W0RJ.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2023-10-10"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555721.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555721.1"}, "outbreak": {"value": "unassigned"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000068", "node_attrs": {"div": 0.173305, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0MS|PP_006W0MS|nan/XXXX-XX-XX", "node_attrs": {"div": 0.173306, "strain": {"value": "PP_006W0MS|PP_006W0MS|nan/XXXX-XX-XX"}, "accession": "PP_006W0MS", "author": {"author": "Alonso, D.", "value": "Alonso, D."}, "length": {"value": 1845}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "PPX_accession": {"value": "PP_006W0MS.1", "url": "https://pathoplexus.org/seq/PP_006W0MS.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2023-09-21"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP493851.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP493851.1"}, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000069", "node_attrs": {"div": 0.173306, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0PN|Andes/ARG-O.l.444|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.173306, "strain": {"value": "PP_006W0PN|Andes/ARG-O.l.444|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0PN", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "length": {"value": 1845}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W0PN.1", "url": "https://pathoplexus.org/seq/PP_006W0PN.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2023-10-10"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555723.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555723.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "mice and others"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000070", "node_attrs": {"div": 0.173306, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0QL|Andes/ARG_p3|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.173306, "strain": {"value": "PP_006W0QL|Andes/ARG_p3|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0QL", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "length": {"value": 1861}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W0QL.1", "url": "https://pathoplexus.org/seq/PP_006W0QL.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2023-10-10"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555720.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555720.1"}, "outbreak": {"value": "unassigned"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0NQ|Arg-O.l.444|nan/XXXX-XX-XX", "node_attrs": {"div": 0.173306, "strain": {"value": "PP_006W0NQ|Arg-O.l.444|nan/XXXX-XX-XX"}, "accession": "PP_006W0NQ", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "length": {"value": 1845}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "Malbran Institute, Virology"}, "PPX_accession": {"value": "PP_006W0NQ.1", "url": "https://pathoplexus.org/seq/PP_006W0NQ.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2023-10-10"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555719.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555719.1"}, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000071", "node_attrs": {"div": 0.149098, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A261G", "C498T", "T684C", "T693C", "A708G", "G1645A", "A1672G"], "NSs": ["N47S"]}, "labels": {"aa": "NSs: N47S"}}, "children": [{"name": "PP_006W0AF|ARCH14/NRC1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.176458, "strain": {"value": "PP_006W0AF|ARCH14/NRC1|nan/XXXX-XX-XX"}, "accession": "PP_006W0AF", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "length": {"value": 1860}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "PPX_accession": {"value": "PP_006W0AF.1", "url": "https://pathoplexus.org/seq/PP_006W0AF.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-03-31"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850086.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850086.1"}, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C72T", "T354C", "A372G", "G378A", "A401G", "T417C", "G426A", "G438A", "C471T", "T525C", "A540G", "A543G", "A594G", "T678C", "A705G", "C723T", "G771A", "G783A", "T918C", "C945A", "T975C", "C978T", "G1047A", "G1101A", "G1110A", "C1135T", "T1152C", "C1188T", "A1200T", "T1221C", "C1255T", "G1296A", "C1302T", "T1320C", "T1349C", "C1360T", "T1405C", "G1447T", "T1485C", "G1558A", "G1572T", "-1573G", "G1634A", "G1641A", "A1642G", "A1652C", "G1721A"], "N": ["K120R"]}, "labels": {"aa": "N: K120R"}}}, {"name": "NODE_0000072", "node_attrs": {"div": 0.163807, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C172T", "A240G", "T366C", "T474C", "A477G", "A588G", "A597G", "G633T", "T657C", "A729G", "A930G", "C1074T", "A1137G", "G1173A", "T1185C", "A1197C", "T1269A", "T1320A", "G1330A", "G1332A", "A1356G", "C1397T", "T1436C", "T1452A", "A1586T", "A1607G"], "NSs": ["Q40R"]}, "labels": {"aa": "NSs: Q40R"}}, "children": [{"name": "NODE_0000073", "node_attrs": {"div": 0.168498, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T459C", "G516A", "C546T", "G912A", "T918C", "G1326A", "A1336G", "G1395A", "A1499G", "A1530G", "G1672A"]}}, "children": [{"name": "PP_006W08K|AREB14/P2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.168499, "strain": {"value": "PP_006W08K|AREB14/P2|nan/XXXX-XX-XX"}, "accession": "PP_006W08K", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "length": {"value": 1876}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "PPX_accession": {"value": "PP_006W08K.1", "url": "https://pathoplexus.org/seq/PP_006W08K.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-03-31"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850084.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850084.1"}, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000074", "node_attrs": {"div": 0.168499, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W07M|AREB14/P1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.168499, "strain": {"value": "PP_006W07M|AREB14/P1|nan/XXXX-XX-XX"}, "accession": "PP_006W07M", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "length": {"value": 1850}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "PPX_accession": {"value": "PP_006W07M.1", "url": "https://pathoplexus.org/seq/PP_006W07M.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-03-31"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850083.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850083.1"}, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W09H|AREB14/P3|nan/XXXX-XX-XX", "node_attrs": {"div": 0.168499, "strain": {"value": "PP_006W09H|AREB14/P3|nan/XXXX-XX-XX"}, "accession": "PP_006W09H", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "length": {"value": 1819}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "PPX_accession": {"value": "PP_006W09H.1", "url": "https://pathoplexus.org/seq/PP_006W09H.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-03-31"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850085.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850085.1"}, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000075", "node_attrs": {"div": 0.164562, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C507T", "T1449C"]}}, "children": [{"name": "NODE_0000076", "node_attrs": {"div": 0.164563, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ7Q|NRC-6/18_05/21/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.167671, "strain": {"value": "PP_006VZ7Q|NRC-6/18_05/21/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ7Q", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1867}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZ7Q.1", "url": "https://pathoplexus.org/seq/PP_006VZ7Q.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258228.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258228.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["G330A", "T651C", "A846G", "C1255T", "C1436T", "G1558T", "C1800T"]}}}, {"name": "NODE_0000077", "node_attrs": {"div": 0.166897, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G318A", "G624A", "A1077G"]}}, "children": [{"name": "PP_006W0BD|ARLA17/NRC2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172362, "strain": {"value": "PP_006W0BD|ARLA17/NRC2|nan/XXXX-XX-XX"}, "accession": "PP_006W0BD", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "length": {"value": 1844}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "PPX_accession": {"value": "PP_006W0BD.1", "url": "https://pathoplexus.org/seq/PP_006W0BD.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-03-31"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850087.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850087.1"}, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C244T", "T336C", "T396C", "T636C", "A846G", "G930A", "A1330C", "A1340G", "A1530G", "G1661-", "T1662-", "T1663-"]}}}, {"name": "PP_006VZ20|Epilink/96_2/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.170012, "strain": {"value": "PP_006VZ20|Epilink/96_2/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ20", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1867}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZ20.1", "url": "https://pathoplexus.org/seq/PP_006VZ20.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258223.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258223.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["T172C", "C420T", "A990G", "C1065T", "G1734A", "C1756T"]}}}]}]}, {"name": "NODE_0000078", "node_attrs": {"div": 0.169229, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T61C", "T363C", "T1005C", "G1143A", "C1197T", "T1281C", "T1350G", "A1793C"]}}, "children": [{"name": "PP_006VZY7|Epuyen/18-19_Patient_7_12/7/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.170005, "strain": {"value": "PP_006VZY7|Epuyen/18-19_Patient_7_12/7/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZY7", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1856}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZY7.1", "url": "https://pathoplexus.org/seq/PP_006VZY7.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258254.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258254.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["T782C"], "N": ["L247S"]}, "labels": {"aa": "N: L247S"}}}, {"name": "NODE_0000079", "node_attrs": {"div": 0.16923, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ8N|Epuyen/18-19_Patient_10_12/10/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZ8N|Epuyen/18-19_Patient_10_12/10/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ8N", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1843}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZ8N.1", "url": "https://pathoplexus.org/seq/PP_006VZ8N.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258229.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258229.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000080", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZUF|Epuyen/18-19_Patient_3_11/20/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZUF|Epuyen/18-19_Patient_3_11/20/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZUF", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1851}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZUF.1", "url": "https://pathoplexus.org/seq/PP_006VZUF.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258250.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258250.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000081", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZMV|Epuyen/18-19_Patient_23_1/7/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZMV|Epuyen/18-19_Patient_23_1/7/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZMV", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1850}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZMV.1", "url": "https://pathoplexus.org/seq/PP_006VZMV.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258242.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258242.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["T1391C", "T1650C"]}}}, {"name": "NODE_0000082", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZCE|Epuyen/18-19_Patient_14_12/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZCE|Epuyen/18-19_Patient_14_12/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZCE", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1855}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZCE.1", "url": "https://pathoplexus.org/seq/PP_006VZCE.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258233.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258233.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000083", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZRM|Epuyen/18-19_Patient_27_1/8/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZRM|Epuyen/18-19_Patient_27_1/8/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZRM", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1848}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZRM.1", "url": "https://pathoplexus.org/seq/PP_006VZRM.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258246.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258246.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000084", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZKZ|Epuyen/18-19_Patient_20_1/1/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZKZ|Epuyen/18-19_Patient_20_1/1/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZKZ", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1862}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZKZ.1", "url": "https://pathoplexus.org/seq/PP_006VZKZ.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258240.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258240.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000085", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W01Z|Epuyen/18-19_Patient_2_11/23/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006W01Z|Epuyen/18-19_Patient_2_11/23/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006W01Z", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1804}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W01Z.1", "url": "https://pathoplexus.org/seq/PP_006W01Z.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258249.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258249.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000086", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZPR|Epuyen/18-19_Patient_25_1/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZPR|Epuyen/18-19_Patient_25_1/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZPR", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1861}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZPR.1", "url": "https://pathoplexus.org/seq/PP_006VZPR.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258244.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258244.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000087", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZLX|Epuyen/18-19_Patient_22_1/1/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZLX|Epuyen/18-19_Patient_22_1/1/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZLX", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1863}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZLX.1", "url": "https://pathoplexus.org/seq/PP_006VZLX.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258241.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258241.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["T1428C"]}}}, {"name": "NODE_0000088", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZX9|Epuyen/18-19_Patient_6_11/25/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZX9|Epuyen/18-19_Patient_6_11/25/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZX9", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1866}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZX9.1", "url": "https://pathoplexus.org/seq/PP_006VZX9.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258253.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258253.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000089", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C1869T"]}}, "children": [{"name": "PP_006VZF8|Epuyen/18-19_Patient_17_12/31/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZF8|Epuyen/18-19_Patient_17_12/31/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZF8", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1861}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZF8.1", "url": "https://pathoplexus.org/seq/PP_006VZF8.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258236.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258236.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000090", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZG6|Epuyen/18-19_Patient_18_12/31/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZG6|Epuyen/18-19_Patient_18_12/31/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZG6", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1827}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZG6.1", "url": "https://pathoplexus.org/seq/PP_006VZG6.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258237.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258237.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000091", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZNT", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1849}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZNT.1", "url": "https://pathoplexus.org/seq/PP_006VZNT.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258243.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258243.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000092", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZJ1|Epuyen/18-19_Patient_1_11/3/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZJ1|Epuyen/18-19_Patient_1_11/3/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZJ1", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1851}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZJ1.1", "url": "https://pathoplexus.org/seq/PP_006VZJ1.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258239.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258239.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000093", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZWB", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1849}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZWB.1", "url": "https://pathoplexus.org/seq/PP_006VZWB.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258252.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258252.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000094", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W001|Epuyen/18-19_Patient_9_12/12/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006W001|Epuyen/18-19_Patient_9_12/12/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006W001", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1868}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W001.1", "url": "https://pathoplexus.org/seq/PP_006W001.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258256.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258256.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000095", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZVD|Epuyen/18-19_Patient_4_11/27/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZVD|Epuyen/18-19_Patient_4_11/27/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZVD", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1856}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZVD.1", "url": "https://pathoplexus.org/seq/PP_006VZVD.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258251.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258251.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000096", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZDC|Epuyen/18-19_Patient_15_12/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZDC|Epuyen/18-19_Patient_15_12/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZDC", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1828}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZDC.1", "url": "https://pathoplexus.org/seq/PP_006VZDC.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258234.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258234.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000097", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZBG|Epuyen/18-19_Patient_13_12/24/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZBG|Epuyen/18-19_Patient_13_12/24/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZBG", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1851}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZBG.1", "url": "https://pathoplexus.org/seq/PP_006VZBG.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258232.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258232.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000098", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZTH|Epuyen/18-19_Patient_29_1/14/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZTH|Epuyen/18-19_Patient_29_1/14/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZTH", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1861}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZTH.1", "url": "https://pathoplexus.org/seq/PP_006VZTH.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258248.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258248.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000099", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZSK", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1849}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZSK.1", "url": "https://pathoplexus.org/seq/PP_006VZSK.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258247.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258247.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000100", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZQP|Epuyen/18-19_Patient_26_1/4/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZQP|Epuyen/18-19_Patient_26_1/4/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZQP", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1858}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZQP.1", "url": "https://pathoplexus.org/seq/PP_006VZQP.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258245.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258245.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000101", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZZ5", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1858}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZZ5.1", "url": "https://pathoplexus.org/seq/PP_006VZZ5.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258255.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258255.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000102", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZEA", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1859}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZEA.1", "url": "https://pathoplexus.org/seq/PP_006VZEA.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258235.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258235.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000103", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZH3|Epuyen/18-19_Patient_19_1/2/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZH3|Epuyen/18-19_Patient_19_1/2/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZH3", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1865}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZH3.1", "url": "https://pathoplexus.org/seq/PP_006VZH3.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258238.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258238.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000104", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2C9|Epuyen|Argentina/2022-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006W2C9|Epuyen|Argentina/2022-XX-XX"}, "accession": "PP_006W2C9", "author": {"author": "Coelho, R.; Kehl, S.; Periolo, N.; Alonso, D.; Bellomo, C.; Martinez, V.", "value": "Coelho, R.; Kehl, S.; Periolo, N.; Alonso, D.; Bellomo, C.; Martinez, V."}, "length": {"value": 1848}, "date": {"value": "2022-XX-XX"}, "institution": {"value": "INEI ANLIS, Virology"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006W2C9.1", "url": "https://pathoplexus.org/seq/PP_006W2C9.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2024-09-25"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Coelho et al."}, "INSDC_accession": {"value": "PQ215668.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PQ215668.1"}, "outbreak": {"value": "unassigned"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {"nuc": ["G1520A"]}}}, {"name": "NODE_0000105", "node_attrs": {"div": 0.169231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZAJ", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1853}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZAJ.1", "url": "https://pathoplexus.org/seq/PP_006VZAJ.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258231.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258231.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169231, "strain": {"value": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ9L", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "length": {"value": 1844}, "date": {"value": "XXXX-XX-XX"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "country": {"value": "Argentina"}, "PPX_accession": {"value": "PP_006VZ9L.1", "url": "https://pathoplexus.org/seq/PP_006VZ9L.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "date_released": {"value": "2020-09-30"}, "totalAmbiguousNucs": {"value": 0}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258230.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258230.1"}, "outbreak": {"value": "unassigned"}, "host": {"value": "human"}, "region": {"value": "South America"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, "root_sequence": {"N": "MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQSRRAAVSTLETKLGELKRQLADLVAAQKLATKPVDPTGLEPDDHLKEKSSLRYGNVLDVNSIDLEEPSGQTADWKAIGAYILGFAIPIILKALYMLSTRGRQTVKDNKGTRIRFKDDSSFEEVNGIRKPKHLYVSMPTAQSTMKAEEITPGRFRTIACGLFPAQVKARNIISPVMGVIGFGFFVKDWMDRIEEFLAAECPFLPKPKVASEAFMSTNKMYFLNRQRQVNESKVQDIIDLIDHAETESATLFTEIATPHSVWVFACAPDRCPPTALYVAGVPELGAFFSILQDMRNTIMASKSVGTAEEKLKKKSAFYQSYLRRTQSMGIQLDQKIIILYMLSWGKEAVNHFHLGDDMDPELRQLAQSLIDTKVKEISNQEPLKL*", "NSs": "MPRRQWRWTRMTLTRAHYKVDGQLCLHWRPNSENLRGNLQIWWQLKNWLQNQLIQQGLSLMII*", "nuc": "TAGTAGTAGACTCCTTGAGAAGCTACTGCTGCGAAAGCTGGAATGAGCACCCTCCAAGAATTGCAGGAAAACATCACAGCACACGAACAACAGCTCGTGACTGCTCGGCAAAAGCTTAAGGATGCCGAGAAGGCAGTGGAGGTGGACCCGGATGACGTTAACAAGAGCACACTACAAAGTAGACGGGCAGCTGTGTCTACATTGGAGACCAAACTCGGAGAACTTAAGAGGCAACTTGCAGATTTGGTGGCAGCTCAAAAATTGGCTACAAAACCAGTTGATCCAACAGGGCTTGAGCCTGATGATCATCTAAAGGAAAAATCATCTCTGAGATATGGGAATGTCCTGGATGTTAATTCAATTGATTTGGAAGAACCGAGTGGACAGACTGCTGATTGGAAGGCTATAGGAGCATACATCTTAGGGTTTGCAATTCCGATCATCCTAAAGGCCTTATACATGCTGTCAACCCGTGGGAGACAAACTGTGAAAGACAACAAAGGGACCAGGATAAGGTTTAAGGATGATTCTTCCTTTGAAGAAGTCAATGGGATACGTAAACCAAAACACCTTTACGTCTCAATGCCAACTGCACAGTCCACTATGAAGGCTGAAGAAATCACGCCAGGACGATTTAGGACAATTGCTTGTGGCCTTTTTCCAGCACAGGTCAAAGCCCGAAATATAATAAGTCCTGTAATGGGAGTAATTGGATTTGGCTTCTTTGTAAAGGATTGGATGGATCGGATAGAAGAGTTTCTGGCTGCAGAGTGTCCATTCTTACCTAAGCCAAAGGTCGCCTCAGAAGCCTTCATGTCTACCAATAAGATGTATTTTCTGAACAGACAGAGACAAGTCAATGAATCTAAGGTTCAAGATATTATCGATTTGATAGACCATGCTGAGACCGAGTCTGCTACCTTGTTTACAGAGATTGCAACACCCCATTCAGTCTGGGTGTTTGCATGTGCACCTGACCGGTGCCCTCCAACTGCATTGTATGTTGCAGGGGTACCGGAACTTGGTGCATTTTTTTCTATCCTTCAGGACATGCGTAATACCATCATGGCATCTAAATCTGTAGGGACTGCAGAAGAGAAGCTAAAGAAAAAATCTGCCTTCTACCAATCATACCTAAGAAGGACACAATCTATGGGAATCCAACTGGACCAGAAGATCATAATCCTTTACATGCTATCATGGGGTAAAGAAGCTGTGAATCACTTCCATCTTGGTGATGATATGGACCCTGAACTCAGGCAGCTAGCACAATCTCTGATCGATACTAAGGTGAAGGAGATCTCCAACCAAGAGCCACTTAAGTTGTAGGTGCTTAATGAAATCATGATTGAAGAAAGACTTTCCGGGCTTGTGCCACATATTAATCATCTCAGGACCTATCCTTAATGTGATTAATAGGGTTTTATTATAAGGGCAGTTAATGGGGTTGGTTACTAACTATGGGTAAGGGTTCATTACCATTTTTGCACTAGGGTTAAAGGGCCACTACATTGTATTTGCACTAAGGGAAATGGGAGGTGGGTTAGTTTGTATTTAGTTGTTAAGTTTTTTATAATCATATGTTAATGAGGAATTAGCTATATGATATCACTGATTGATTGGCTATTTTTAGGTTAAGTAATTGTAGTTAAATAGTTGTGTTAAGTTAGTATGTTAAGGTTTATAGGTTAAGATTTACTAACAATCATATTATGTCATTAGATGTAAATTTCATTCCTGGCTTGCTTCTGCTTTCGCATTGCTAACCTACAACAAGACTACCTCACCCACTACCCCTCCCCTATTCTACCTCAACACATACTACCTCACATTTGATTTTTCTTGATTGCTTTTCAAGGAGCATACTACTA"}} \ No newline at end of file +{"version": "v2", "meta": {"title": "Andes Virus S Segment (ANDV)", "updated": "2026-05-12", "build_url": "https://github.com/nextstrain/andv", "data_provenance": [{"name": "Pathoplexus", "url": "https://pathoplexus.org/"}], "maintainers": [{"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}], "display_defaults": {"map_triplicate": false, "color_by": "outbreak", "distance_measure": "div"}, "genome_annotations": {"N": {"end": 1329, "seqid": "defaults/s/reference.gb", "start": 43, "strand": "+", "type": "CDS"}, "NSs": {"end": 313, "seqid": "defaults/s/reference.gb", "start": 122, "strand": "+", "type": "CDS"}, "nuc": {"end": 1871, "start": 1, "strand": "+", "type": "source"}}, "colorings": [{"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "date", "title": "Collection Date", "type": "categorical"}, {"key": "region", "title": "Region", "type": "categorical", "scale": [["Africa", "#CEB541"], ["Europe", "#E39B39"], ["South America", "#E56C2F"]]}, {"key": "country", "title": "Country", "type": "categorical"}, {"key": "division", "title": "Admin Division", "type": "categorical"}, {"key": "host", "title": "Host", "type": "categorical"}, {"key": "abbr_authors", "title": "Authors", "type": "categorical"}, {"key": "dataUseTerms", "title": "Data use terms", "type": "categorical"}, {"key": "restrictedUntil", "title": "Restricted Until", "type": "categorical"}, {"key": "date_released", "title": "Release Date", "type": "categorical"}, {"key": "length", "title": "Length", "type": "continuous"}, {"key": "INSDC_accession", "title": "INSDC Accession", "type": "categorical"}, {"key": "PPX_accession", "title": "Pathoplexus Accession", "type": "categorical"}, {"key": "institution", "title": "Author Affiliations", "type": "categorical"}, {"key": "totalAmbiguousNucs", "title": "Ambiguous Nucleotides", "type": "continuous"}, {"key": "outbreak", "title": "outbreak", "type": "categorical"}], "filters": ["country", "division", "host", "abbr_authors", "clade_membership"], "geo_resolutions": [{"key": "country", "demes": {"Bolivia": {"latitude": -17.0568696, "longitude": -64.9912286}, "Brazil": {"latitude": -10.3333332, "longitude": -53.1999999}, "Paraguay": {"latitude": -23.3165935, "longitude": -58.1693445}, "Peru": {"latitude": -9.650468, "longitude": -75.328211}, "Netherlands": {"latitude": 52.1326, "longitude": 5.2913}, "Argentina": {"latitude": -37.052315, "longitude": -64.869142}, "Switzerland": {"latitude": 46.8182, "longitude": 8.2275}, "Uruguay": {"latitude": -33.0, "longitude": -56.0}, "Chile": {"latitude": -31.7613364, "longitude": -71.3187696}, "South Africa": {"latitude": -28.8166235, "longitude": 24.991639}}}], "panels": ["tree", "entropy"], "extensions": {"nextclade": {"clade_node_attrs": [{"name": "outbreak", "displayName": "Outbreak", "description": "Annotation of recent outbreaks (to be refined)", "skipAsReference": false}], "placement_masks": [{"begin": 0, "end": 42}, {"begin": 1329, "end": 1871}]}}}, "tree": {"name": "NODE_0000000", "node_attrs": {"div": 0, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G28A", "G63A", "C72T", "C106A", "A111G", "G120A", "G133A", "A135C", "C156G", "T225C", "A234G", "T244C", "T262C", "T306C", "A312G", "T354C", "A360C", "T367C", "A384T", "G387A", "A408T", "A411G", "A414T", "C420A", "T421C", "G426A", "G438A", "C453T", "T454C", "G465T", "A468C", "A480G", "A483G", "T486A", "G489C", "G510A", "T531A", "A555T", "T558G", "A561G", "A567G", "C570T", "T573G", "C576T", "G597A", "T603A", "G609A", "A618G", "C621A", "G624A", "C631A", "A633G", "G639A", "T648A", "C654G", "T657A", "T660C", "A663T", "G669A", "C672G", "C679A", "A687C", "A690T", "T696A", "A699C", "A705G", "A714G", "G718A", "A729G", "T735C", "T744A", "C745A", "G756T", "T759C", "G762A", "T774C", "A792T", "G796A", "T797C", "C798T", "G799C", "C801A", "A804T", "C810A", "T817G", "A829G", "T830C", "G831T", "T837C", "A846G", "A855G", "C858A", "A859G", "G870A", "T873C", "T879C", "T882A", "A883G", "C885G", "T888C", "T889C", "A894T", "A907T", "C909T", "T915A", "T918A", "T922C", "G933A", "A939C", "A942C", "C954G", "G960A", "T975A", "C978T", "C979A", "T987A", "T993A", "T1005A", "A1008T", "G1017A", "T1023G", "A1029C", "T1032C", "T1036G", "C1054A", "T1056A", "T1074A", "A1077G", "A1083G", "G1086A", "A1104C", "A1110G", "A1128G", "A1140G", "A1149G", "A1158G", "G1173A", "A1200T", "A1209G", "T1221C", "C1224T", "C1248T", "A1254G", "C1257T", "G1260A", "A1266T", "A1269T", "T1273G", "C1276T", "C1281T", "C1302T", "C1305A", "A1317T", "C1318T", "T1320A", "T1324C", "G1329A", "C1333G", "A1356T", "T1380C", "A1400-", "T1401-", "T1417C", "C1436T", "A1437G", "T1440A", "A1442G", "G1447T", "G1450C", "G1451A", "T1462C", "G1469-", "G1470-", "C1480T", "A1500-", "A1506-", "C1507T", "G1514A", "A1531-", "G1534T", "G1535C", "G1538T", "G1539A", "G1542C", "G1551A", "T1568A", "T1588-", "G1589T", "G1592T", "T1607A", "C1612G", "G1634-", "T1636-", "G1645A", "T1657-", "G1666A", "G1670T", "T1681-", "T1685-", "G1687-", "G1688-", "C1707T", "G1740T", "G1745-", "C1746-", "T1748G", "A1759T", "T1760A", "G1762A", "G1777A", "C1787T", "T1792A", "A1804T"], "N": ["D38E", "G226S", "D234E", "E238D", "V252T", "A253P", "S259A", "M263A", "N273D", "K276Q", "I281V", "T289S", "T300S", "S332A"], "NSs": ["R3K", "R7K", "R10Q", "T12R", "S32L", "N34S", "L35S", "I62T"]}, "labels": {"aa": "N: D38E, G226S, D234E, E238D, V252T, A253P, S259A, M263A, N273D, K276Q, I281V, T289S, T300S, S332A; NSs: R3K, R7K, R10Q, T12R, S32L, N34S, L35S, I62T"}}, "children": [{"name": "NODE_0000001", "node_attrs": {"div": 0.0287492, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A78C", "T105C", "G150A", "A222G", "C244T", "T390A", "A423G", "T465G", "G477A", "A492G", "T519C", "C546A", "G573T", "A597G", "A642T", "A681G", "G714T", "A801T", "A807G", "A858T", "A868C", "A875C", "G885A", "C888A", "C941G", "G1011A", "T1044A", "C1135T", "A1137G", "T1152A", "C1161T", "A1197G", "A1212G", "G1263A", "C1344T", "A1396G", "C1403-", "T1404-", "C1459T", "G1501-", "G1502-", "C1504-", "C1505-", "T1507-", "T1513-", "A1514-", "G1529-", "A1530-", "A1581G", "A1601G", "T1621C", "G1622A", "-1634T", "-1657T", "G1680-"], "N": ["Q278P"], "NSs": ["N38S"]}, "labels": {"aa": "N: Q278P; NSs: N38S"}}, "children": [{"name": "PP_006VQ61|14403|nan/XXXX-XX-XX", "node_attrs": {"div": 0.13292, "strain": {"value": "PP_006VQ61|14403|nan/XXXX-XX-XX"}, "accession": "PP_006VQ61", "author": {"author": "Bohlman, M. C.; Morzunov, S. P.; Meissner, J.; Taylor, M. B.; Ishibashi, K.; Rowe, J.; Levis, S.; Enria, D.; St Jeor, S. C.; Meissner, J. D.; St. Jeor, S. C.", "value": "Bohlman, M. C.; Morzunov, S. P.; Meissner, J.; Taylor, M. B.; Ishibashi, K.; Rowe, J.; Levis, S.; Enria, D.; St Jeor, S. C.; Meissner, J. D.; St. Jeor, S. C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Bohlman et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2002-02-27"}, "length": {"value": 1860}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "University of Nevada, Reno, Microbiology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VQ61.1", "url": "https://pathoplexus.org/seq/PP_006VQ61.1"}, "INSDC_accession": {"value": "AF482717.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF482717.1"}}, "branch_attrs": {"mutations": {"nuc": ["G33A", "A63G", "G93T", "G99C", "G114A", "G141A", "G156A", "T159C", "C172T", "A189G", "C216T", "A261G", "A268G", "A273G", "A318G", "C328T", "A333G", "C346T", "T357C", "T366C", "G369T", "G402A", "T405A", "C417T", "C444A", "A447G", "G450A", "T453A", "C463T", "G465A", "G483A", "C489T", "G504C", "G522A", "A543G", "T555C", "A564G", "G567A", "C579T", "T591A", "G618A", "A630C", "A648T", "A657T", "G672T", "A675G", "C687A", "T717C", "T726C", "G729C", "G747A", "A750T", "C760T", "C774T", "A777G", "C780T", "T781C", "G795A", "T798C", "C799A", "T801C", "G817T", "T819A", "C822T", "C838T", "G840A", "T884C", "T894A", "C897A", "T900G", "T903G", "G906A", "C921T", "C922T", "G924A", "T927C", "C939A", "C945T", "G954A", "G981A", "A987G", "A990T", "A996C", "T997C", "A1005T", "T1008A", "G1023T", "T1026G", "C1032T", "C1041A", "G1047A", "A1056G", "T1059C", "C1062A", "C1065A", "T1080G", "G1083C", "A1086G", "A1113G", "C1119T", "A1138C", "G1143A", "A1146C", "A1164G", "C1165T", "C1170T", "A1173G", "C1179T", "T1188C", "C1191T", "C1195T", "T1200A", "T1206A", "G1218C", "C1221T", "C1227T", "T1257C", "T1266G", "T1284C", "T1287A", "G1290A", "G1293A", "A1305T", "T1317A", "A1320G", "G1323A", "C1324T", "T1334A", "T1338G", "A1340G", "A1341C", "T1343G", "T1350G", "G1351C", "A1352T", "A1353T", "A1355G", "T1356A", "A1357C", "A1359G", "C1360T", "C1364T", "C1398T", "C1402-", "A1407C", "T1413A", "A1440G", "A1441T", "G1442-", "T1448C", "C1450T", "G1471-", "T1472-", "T1473-", "C1474-", "T1485-", "T1486-", "G1493T", "G1494T", "G1495T", "A1498T", "-1500A", "G1503-", "C1510A", "-1513A", "A1526C", "G1527A", "C1535T", "G1536T", "T1538A", "G1541A", "G1543T", "G1547T", "T1548A", "T1550G", "A1551T", "G1558-", "T1563A", "A1565T", "G1566C", "T1567C", "T1572A", "C1578T", "T1580G", "A1587G", "-1588T", "T1589C", "G1591T", "T1595C", "T1620C", "T1629A", "G1633A", "-1636T", "G1639T", "T1640C", "A1655G", "G1656T", "A1664T", "T1671A", "A1672G", "G1674A", "T1675A", "G1679T", "-1680C", "-1681C", "T1683G", "A1686-", "T1689-", "T1690-", "A1691-", "A1692-", "G1693-", "T1696A", "C1699T", "T1707-", "G1715A", "T1716C", "T1719A", "T1739A", "C1763T", "A1778G", "C1791T", "C1797T", "A1815C", "C1816A", "T1834C"], "N": ["Q17H", "A31T", "T76A", "P253T", "A259S", "V281A", "D282E", "D285E", "H286Q", "S411A"], "NSs": ["K3R", "Q5P", "R12K", "L13S", "Q23R", "N47S", "N51S"]}, "labels": {"aa": "N: Q17H, A31T, T76A, P253T, A259S, V281A, D282E, D285E, H286Q, S411A; NSs: K3R, Q5P, R12K, L13S, Q23R, N47S, N51S"}}}, {"name": "NODE_0000002", "node_attrs": {"div": 0.0597113, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A28G", "C50A", "C126A", "G129A", "G132A", "A133G", "G141T", "A178G", "T198A", "C292A", "C360T", "G378A", "T384A", "T396C", "C454T", "C468A", "C507T", "G577A", "A582T", "A627T", "C655T", "A679C", "C735T", "T819C", "T834C", "G840T", "C879T", "A975T", "C1102T", "C1104A", "G1128A", "A1131T", "G1140A", "A1141C", "T1188G", "A1272G", "C1378T", "-1401T", "A1451T", "C1542T", "A1568T", "T1582-", "T1668C", "-1687T", "C1767T", "A1770T", "C1830A"], "N": ["T3N", "E33D", "S46G", "L84I", "V179I"], "NSs": ["P2Q", "R4K", "L26Q"]}, "labels": {"aa": "N: T3N, E33D, S46G, L84I, V179I; NSs: P2Q, R4K, L26Q"}}, "children": [{"name": "PP_006VQ53|13796|nan/XXXX-XX-XX", "node_attrs": {"div": 0.159354, "strain": {"value": "PP_006VQ53|13796|nan/XXXX-XX-XX"}, "accession": "PP_006VQ53", "author": {"author": "Bohlman, M. C.; Morzunov, S. P.; Meissner, J.; Taylor, M. B.; Ishibashi, K.; Rowe, J.; Levis, S.; Enria, D.; St Jeor, S. C.; Meissner, J. D.; St. Jeor, S. C.", "value": "Bohlman, M. C.; Morzunov, S. P.; Meissner, J.; Taylor, M. B.; Ishibashi, K.; Rowe, J.; Levis, S.; Enria, D.; St Jeor, S. C.; Meissner, J. D.; St. Jeor, S. C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Bohlman et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2002-02-27"}, "length": {"value": 1869}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "University of Nevada, Reno, Microbiology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VQ53.1", "url": "https://pathoplexus.org/seq/PP_006VQ53.1"}, "INSDC_accession": {"value": "AF482716.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF482716.1"}, "host": {"value": "Argentine bolo mouse"}}, "branch_attrs": {"mutations": {"nuc": ["G19T", "C32T", "G33A", "A63G", "G66A", "A69G", "C78T", "G93A", "T117G", "T141C", "C168T", "A181C", "C216T", "G231A", "A240T", "T243C", "T327C", "C328T", "G348T", "T366C", "A390C", "G411A", "T414A", "A426T", "A438G", "A456G", "A486G", "A501G", "A513T", "G516A", "C534T", "C556A", "T573C", "T576C", "T582C", "A588G", "A594T", "A615G", "A630G", "T642G", "C647T", "G654A", "A657G", "C660T", "A666T", "T690A", "T693C", "C699G", "A708C", "C720T", "A745C", "A753G", "A755G", "T756A", "C760T", "A762G", "T765A", "A768G", "G771A", "A777T", "T792C", "G795A", "T798A", "C799G", "T802G", "G808A", "T831A", "C837T", "C838T", "G849A", "A850C", "A852C", "A864G", "A882T", "A885T", "G891T", "T900G", "A915T", "A918C", "T936A", "C939T", "A960G", "C984T", "A990G", "G999A", "A1005G", "T1008A", "A1014G", "A1020G", "G1023A", "C1032T", "T1038C", "C1041A", "G1047A", "C1050T", "C1065T", "T1089A", "A1092T", "A1095G", "T1116A", "C1119A", "C1125T", "C1134T", "G1143A", "A1173G", "A1182C", "C1191T", "C1195T", "G1254A", "C1255T", "T1257G", "T1266A", "T1269A", "G1278A", "G1290A", "T1302C", "A1311G", "A1320G", "G1333-", "T1335C", "A1340T", "A1342G", "T1346G", "G1347T", "A1348C", "G1351A", "A1353T", "A1357G", "A1359G", "C1360T", "C1365A", "C1380T", "A1381G", "C1397G", "-1400G", "A1407C", "T1423G", "T1424A", "T1439G", "C1450A", "T1451C", "T1453-", "A1467T", "-1469C", "-1470T", "T1473C", "A1475T", "T1496G", "T1497A", "-1500T", "-1501G", "-1502G", "-1504G", "-1505A", "-1506T", "-1507A", "-1514G", "T1517G", "T1519-", "G1520-", "C1523G", "A1526T", "G1528T", "G1536A", "G1543A", "T1549G", "A1551G", "A1564T", "T1569G", "T1574-", "A1575-", "A1576-", "T1577-", "C1578-", "A1579-", "T1580-", "G1581-", "T1584G", "-1588G", "T1592C", "T1595C", "C1599T", "G1612A", "G1614A", "T1617C", "G1623A", "A1626-", "T1627-", "T1628-", "T1629-", "T1630-", "A1637-", "A1641C", "G1648A", "T1649C", "T1650C", "A1653T", "G1656T", "T1657A", "G1659C", "T1660A", "G1661-", "A1665T", "A1666G", "T1667C", "A1669T", "T1673A", "T1676C", "-1685A", "-1688C", "T1689A", "A1691T", "T1696A", "T1697C", "C1703T", "A1705C", "T1712C", "A1713T", "G1715A", "A1718C", "T1719A", "T1739G", "C1756A", "T1769A", "C1771A", "A1778C", "A1793G", "C1794A", "C1799T", "T1804-", "C1816A", "C1818A", "A1829G", "T1833A", "T1853C"], "N": ["A202V", "D238G", "P253A", "S254A", "A256T", "L266F", "D282E", "H286Q", "S411A"], "NSs": ["Q5P", "K7T", "A16V", "G37D", "Q40L", "I41T"]}, "labels": {"aa": "N: A202V, D238G, P253A, S254A, A256T, L266F, D282E, H286Q, S411A; NSs: Q5P, K7T, A16V, G37D, Q40L, I41T"}}}, {"name": "NODE_0000003", "node_attrs": {"div": 0.142686, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T72C", "C135A", "G138T", "C172T", "A189G", "C210A", "A219G", "C225T", "T237G", "G249T", "A252G", "A260G", "A268T", "G312A", "T327A", "C345G", "G369T", "A375G", "A387G", "T393A", "T405A", "A420C", "C421T", "T435C", "A438T", "C441T", "C444A", "T453C", "C459T", "C489G", "G504C", "A546G", "G561A", "A603C", "T636C", "A639G", "A718G", "G732A", "C759T", "T765C", "G766T", "A768T", "C780T", "G789A", "C797A", "T804A", "C822T", "T825C", "T840C", "G846A", "G851A", "A852G", "G855A", "A876C", "A888T", "C889T", "G891A", "G906A", "T907G", "C922T", "G924A", "C929A", "C945A", "A951T", "G954A", "A972T", "G1012A", "A1017T", "C1021T", "T1038G", "C1042T", "A1044G", "A1056G", "A1074C", "T1080A", "G1083T", "A1086G", "G1098A", "A1152C", "T1161A", "G1176A", "C1186T", "T1200C", "G1209A", "T1233G", "T1251A", "A1258C", "A1260T", "G1273T", "T1275A", "G1293T", "G1330A", "T1331C", "A1341G", "T1343-", "T1344-", "A1345-", "T1350C", "A1352C", "T1370C", "T1371A", "A1393C", "-1400C", "-1403T", "-1404T", "A1406-", "G1409A", "G1411-", "T1413C", "A1415C", "G1442A", "T1452A", "A1467-", "A1478G", "T1480C", "A1481-", "T1482C", "G1493-", "T1497C", "A1509-", "C1510-", "A1511G", "T1512-", "A1525G", "A1532-", "T1534C", "G1541T", "A1553G", "G1561A", "A1575G", "A1586C", "T1589-", "A1590-", "A1593C", "T1627G", "T1628A", "T1631C", "T1634G", "-1636G", "A1638T", "G1639A", "A1647-", "G1648-", "A1652T", "A1653G", "A1655T", "G1661A", "A1665G", "T1667A", "T1670G", "G1674-", "T1675-", "T1676-", "G1679T", "-1680T", "-1681G", "T1683C", "-1685T", "-1688G", "T1707G", "T1759A", "A1760T", "A1777G", "C1797T"], "N": ["K73R", "T76S", "S226A", "A242S", "T252N", "R270K", "S289A", "T296K", "V324L", "E424G"], "NSs": ["W6L", "K7M", "Q23R", "P30Q", "L32S", "E33G", "S35L", "L39W", "W43L", "Q44R", "N47D"]}, "labels": {"aa": "N: K73R, T76S, S226A, A242S, T252N, R270K, S289A, T296K, V324L, E424G; NSs: W6L, K7M, Q23R, P30Q, L32S, E33G, S35L, L39W, W43L, Q44R, N47D"}}, "children": [{"name": "PP_006VX14|LBCE 9480|Brazil/2006-XX-XX", "node_attrs": {"div": 0.19338, "strain": {"value": "PP_006VX14|LBCE 9480|Brazil/2006-XX-XX"}, "accession": "PP_006VX14", "author": {"author": "Guterres, A.; de Oliveira, R. C.; Fernandes, J.; Schrago, C. G.; de Lemos, E. R.; Oliveira, R. C.; Lemos, E. R. S.", "value": "Guterres, A.; de Oliveira, R. C.; Fernandes, J.; Schrago, C. G.; de Lemos, E. R.; Oliveira, R. C.; Lemos, E. R. S."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2006-XX-XX"}, "abbr_authors": {"value": "Guterres et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2015-09-15"}, "country": {"value": "Brazil"}, "region": {"value": "South America"}, "division": {"value": "Goias State"}, "length": {"value": 1858}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Instituto Oswaldo Cruz - FIOCRUZ, Laboratorio de Hantaviroses e Rickettsioses"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VX14.1", "url": "https://pathoplexus.org/seq/PP_006VX14.1"}, "INSDC_accession": {"value": "KP202360.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/KP202360.1"}, "host": {"value": "hairy-tailed bolo mouse"}}, "branch_attrs": {"mutations": {"nuc": ["G165A", "C235T", "G297A", "C306T", "C310T", "A318G", "G330T", "C354T", "A372G", "C471T", "G483A", "A513T", "T555C", "T576C", "T651C", "G654T", "T663A", "G672A", "A675G", "T684C", "T690C", "T714C", "G719C", "C720A", "C723T", "A744G", "G747A", "G771A", "T786C", "T801C", "C837T", "C843T", "A844C", "A870G", "C876T", "A915G", "C921T", "A930G", "A954T", "T963C", "T972C", "G981A", "A990G", "T1008C", "A1014G", "C1050T", "C1065T", "C1074T", "G1077A", "G1086C", "A1104G", "C1119T", "C1122T", "C1134T", "G1197A", "G1218A", "T1230C", "T1248C", "G1254A", "T1260C", "G1299-", "T1302C", "G1323A", "C1331-", "G1333A", "T1335A", "G1339T", "-1343C", "-1344G", "-1345G", "A1348G", "C1350G", "C1352T", "A1353C", "A1357G", "A1359T", "C1364T", "C1369T", "C1370G", "T1373A", "C1393T", "G1394A", "C1397G", "C1400A", "-1406T", "T1410-", "C1417-", "T1423C", "T1425A", "A1441G", "A1442T", "A1452G", "T1453C", "A1468-", "G1471-", "C1474A", "A1475C", "T1477G", "G1478T", "C1482-", "T1483-", "-1493T", "G1495-", "G1503-", "T1508-", "G1511-", "G1525C", "A1526G", "-1529G", "-1530G", "-1531T", "C1534G", "C1535G", "T1538C", "A1539C", "T1545A", "G1547C", "T1548C", "T1549A", "A1551G", "G1553-", "T1555G", "A1561-", "A1565T", "T1569A", "T1570A", "G1575C", "T1577A", "C1578A", "G1581T", "-1582T", "C1586T", "-1588A", "-1589G", "-1590T", "C1593T", "T1595A", "T1602C", "C1624T", "C1631-", "T1644C", "A1694G", "T1697C", "C1717A", "A1721G", "T1739C", "T1755-", "T1803C", "T1833C", "G1835T"], "N": ["L324M"], "NSs": ["R15K", "S59N", "T62I"]}, "labels": {"aa": "N: L324M; NSs: R15K, S59N, T62I"}}}, {"name": "PP_006VR9U|P5/Cajuru|Brazil/XXXX-XX-XX", "node_attrs": {"div": 0.182833, "strain": {"value": "PP_006VR9U|P5/Cajuru|Brazil/XXXX-XX-XX"}, "accession": "PP_006VR9U", "author": {"author": "de Sousa, R. L.; Moreli, M. L.; Borges, A. A.; Campos, G. M.; Livonesi, M. C.; Figueiredo, L. T.; Pinto, A. A.; Sousa, R. L. M.; Figueiredo, L. T. M.", "value": "de Sousa, R. L.; Moreli, M. L.; Borges, A. A.; Campos, G. M.; Livonesi, M. C.; Figueiredo, L. T.; Pinto, A. A.; Sousa, R. L. M.; Figueiredo, L. T. M."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "de Sousa et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2007-05-22"}, "country": {"value": "Brazil"}, "region": {"value": "South America"}, "division": {"value": "Sao Paulo State"}, "length": {"value": 1858}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Universidade de Sao Paulo, Centro de Pesquisa em Virologia"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VR9U.1", "url": "https://pathoplexus.org/seq/PP_006VR9U.1"}, "INSDC_accession": {"value": "EF571895.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/EF571895.1"}}, "branch_attrs": {"mutations": {"nuc": ["G156A", "G222A", "G231A", "A324G", "T357C", "T358C", "T363C", "A384C", "A426T", "G492A", "A501G", "A510G", "G552A", "T591A", "G597A", "A708G", "A777T", "T792C", "C813T", "C819A", "G828A", "G849A", "A864G", "C873T", "T927C", "A933G", "C942T", "T978C", "A993T", "G999A", "A1011G", "A1012T", "C1041T", "G1101A", "G1110A", "C1125T", "G1137A", "G1149A", "G1158A", "C1165T", "C1185T", "A1263G", "T1287C", "A1313G", "G1314A", "T1317C", "A1328G", "G1332A", "T1334C", "A1337T", "A1340G", "A1342-", "G1351C", "G1354C", "A1355C", "T1356C", "G1358C", "C1360G", "T1361C", "T1362C", "T1363C", "G1372A", "G1374C", "T1378-", "A1379-", "C1380-", "A1381-", "T1382-", "A1384G", "A1385C", "T1386C", "T1389C", "T1391C", "G1395A", "C1402A", "A1407-", "A1409T", "-1411C", "A1416C", "T1424A", "T1428C", "A1429T", "T1430C", "A1432C", "G1433A", "G1434C", "T1436C", "A1440C", "A1441C", "G1444C", "T1447G", "T1448C", "C1455A", "T1459C", "A1461C", "G1463C", "G1464-", "G1465-", "T1466-", "-1469G", "-1470G", "T1473C", "T1476C", "-1481C", "T1484C", "T1485G", "T1486C", "G1487C", "A1489C", "A1492-", "A1499T", "-1500A", "-1501T", "-1502C", "-1504C", "-1505C", "-1506A", "-1507C", "-1509C", "-1510G", "-1512G", "-1513G", "-1514G", "T1515C", "A1516T", "T1517G", "T1518C", "T1519G", "C1523-", "G1527T", "G1528T", "-1529T", "-1530C", "-1531A", "-1532T", "T1533C", "G1536C", "T1542G", "G1543-", "T1544-", "G1558A", "T1559A", "G1566C", "T1571A", "T1572C", "A1573G", "A1576C", "T1580C", "A1587C", "G1591-", "T1592G", "A1594C", "T1596C", "T1600C", "G1601T", "T1602G", "A1607-", "A1611C", "G1612C", "A1619G", "T1620A", "C1621T", "A1622C", "T1625A", "T1629C", "G1636A", "A1641C", "T1643C", "A1645C", "T1646A", "T1654C", "A1661T", "C1668A", "A1678C", "T1679C", "T1682C", "T1690C", "A1691C", "T1696C", "A1704C", "G1715-", "T1716-", "T1720G", "T1736C", "T1740G", "G1741C", "C1742T", "-1745G", "-1746C", "T1747A", "G1748-", "C1749-", "T1750-", "C1756-", "A1762G", "T1787C", "C1802T", "T1834-", "T1848-", "T1853C"], "N": ["S106P", "A226G"], "NSs": ["R12K", "S34N", "G37D"]}, "labels": {"aa": "N: S106P, A226G; NSs: R12K, S34N, G37D"}}}]}]}]}, {"name": "NODE_0000004", "node_attrs": {"div": 0.0157484, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A106C", "G111A", "C135G", "G480A", "G654C", "A696T", "A796G", "G859A", "T907A", "C1029T", "G1149A", "T1200A", "T1317A", "G1333C", "C1380T", "C1417T", "-1469G", "-1470G", "-1506A", "-1531A", "T1534G", "C1535G", "C1542G", "A1568T", "-1588T", "G1612C", "A1666G", "T1670G", "-1681T"], "N": ["D273N", "Q276K", "S289T", "S300T"], "NSs": ["K7R", "Q10R", "L32S", "S34N"]}, "labels": {"aa": "N: D273N, Q276K, S289T, S300T; NSs: K7R, Q10R, L32S, S34N"}}, "children": [{"name": "NODE_0000005", "node_attrs": {"div": 0.0440953, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G129A", "T435A", "G450A", "A486T", "C534A", "G552T", "T555C", "A564T", "T591A", "C600A", "A609G", "A615G", "T684C", "T765A", "A768T", "G828A", "T867A", "T903A", "A933C", "A979C", "G981T", "A996C", "G999A", "A1014T", "A1054C", "T1089A", "A1092T", "T1215A", "T1242C", "G1273T", "T1331A", "G1419C", "T1422G", "T1472A", "T1473A", "T1476C", "T1483C", "C1510T", "A1511T", "T1582A", "T1600C", "G1633-", "G1639-", "A1651T", "A1655-", "G1656-", "T1658-", "A1710T", "T1711A", "T1716C", "A1721G", "A1734G", "C1738A", "T1820A", "C1830A", "A1831T", "T1840C"], "N": ["A31T", "E297D"], "NSs": ["Q5R"]}, "labels": {"aa": "N: A31T, E297D; NSs: Q5R"}}, "children": [{"name": "PP_006W0VA|VARS/22-01|Brazil/2022-12-09", "node_attrs": {"div": 0.132861, "strain": {"value": "PP_006W0VA|VARS/22-01|Brazil/2022-12-09"}, "accession": "PP_006W0VA", "author": {"author": "Amgarten, D.; Dorlass, E.; dos Santos Soares, A. C.; Moreira Salles, A. P.; Takara, A.; da Silva Santos, A.; Oliveira Sartori, B. S.; Petroni, R. C.; Sallum Filho, C. F. C.; Hidal, J. T.; Camargo, L. F. A.; Doi, A.; Rebello Pinho, J. R.", "value": "Amgarten, D.; Dorlass, E.; dos Santos Soares, A. C.; Moreira Salles, A. P.; Takara, A.; da Silva Santos, A.; Oliveira Sartori, B. S.; Petroni, R. C.; Sallum Filho, C. F. C.; Hidal, J. T.; Camargo, L. F. A.; Doi, A.; Rebello Pinho, J. R."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2022-12-09"}, "abbr_authors": {"value": "Amgarten et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-01-18"}, "country": {"value": "Brazil"}, "region": {"value": "South America"}, "length": {"value": 1912}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Hospital Israelita Albert Einstein, Varsomics"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0VA.1", "url": "https://pathoplexus.org/seq/PP_006W0VA.1"}, "INSDC_accession": {"value": "OQ092245.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OQ092245.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T24A", "A42C", "T61C", "T62A", "C75T", "G99C", "C115T", "T117G", "C125A", "G135T", "G136C", "G138C", "T143A", "G156A", "C216T", "A222G", "G234A", "C262T", "G312A", "A321G", "T327G", "A333G", "G369A", "A372G", "A375G", "T396C", "T405C", "C413T", "T414G", "C441T", "C454T", "T465A", "C471T", "C507A", "A508C", "T537C", "C555A", "G558A", "T570C", "C579T", "A582C", "A621C", "A627T", "G633A", "A639G", "A657G", "C660T", "A669G", "G672A", "A675G", "C678A", "T693C", "G714T", "T717C", "C723T", "G729C", "G732A", "C735A", "T756C", "T792C", "G796A", "T804A", "A807G", "G817T", "T831C", "T834C", "C837T", "G840A", "A858T", "A864C", "A876G", "G885C", "C889T", "G906A", "C908T", "T909C", "C945T", "T978C", "C996T", "G1011A", "C1021T", "C1050T", "A1056T", "T1059C", "C1065T", "A1074T", "A1086T", "A1089G", "G1110A", "C1119T", "C1122T", "C1135T", "G1140A", "A1141C", "G1143A", "A1146T", "A1149G", "T1152C", "A1164G", "G1167T", "C1170T", "G1176A", "C1179T", "C1185T", "G1209A", "G1218T", "T1233C", "G1254A", "A1260G", "T1275A", "T1284C", "G1296A", "T1302C", "T1334C", "G1339C", "A1359T", "C1365T", "C1378A", "C1397-", "C1398-", "-1400A", "A1418T", "T1425C", "T1427C", "A1429C", "T1430G", "A1432-", "A1468T", "A1516G", "A1526C", "G1561A", "T1568G", "T1570A", "T1571G", "T1572G", "T1577G", "C1578T", "A1579G", "T1584C", "G1591T", "T1592G", "A1593T", "T1602A", "T1620C", "T1627A", "T1629A", "T1635-", "A1637-", "-1639T", "A1642T", "T1644C", "A1645T", "T1650A", "G1659-", "T1660-", "A1664T", "G1666A", "G1670-", "T1673G", "G1680T", "T1683G", "-1685T", "-1687G", "-1688G", "C1703T", "-1745G", "-1746C", "G1751T", "T1753A", "T1755-", "C1756-", "T1759C", "T1769A", "T1787C", "C1791A", "T1805G", "C1816-", "C1818T"], "N": ["L7Q", "A28D", "V32L", "V34E", "A124V", "D231E", "A259S", "E274D", "T289I"], "NSs": ["P2T", "R5L", "W6S", "W8R", "R12K", "S32L", "N34S"]}, "labels": {"aa": "N: L7Q, A28D, V32L, V34E, A124V, D231E, A259S, E274D, T289I; NSs: P2T, R5L, W6S, W8R, R12K, S32L, N34S"}}}, {"name": "NODE_0000006", "node_attrs": {"div": 0.0614475, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C306T", "T357C", "T519C", "A543G", "C579G", "T636C", "A657C", "A762G", "G771A", "C879T", "G891C", "C921A", "A1005T", "A1020G", "C1062A", "G1098A", "T1206C", "T1399-", "C1403T", "A1530G", "T1562A", "C1612T", "A1817T"], "N": ["T252A"], "NSs": ["T62I"]}, "labels": {"aa": "N: T252A; NSs: T62I"}}, "children": [{"name": "NODE_0000007", "node_attrs": {"div": 0.12948, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T61C", "C172T", "C225T", "A240G", "G315A", "G330C", "A331C", "A333T", "G369T", "A375G", "G378A", "G402A", "T414C", "C421T", "A432C", "A447G", "A456C", "A501G", "C507T", "T528C", "T549C", "G561A", "T564G", "G573C", "A591T", "G615A", "A627T", "A631C", "A639G", "C654A", "A681G", "T690C", "T696A", "G705A", "T711C", "C735T", "A750T", "A753G", "G789A", "T792C", "T798A", "C799T", "C800T", "A801G", "C822T", "C843T", "G849A", "A850C", "A852G", "A858G", "A864T", "G885T", "C908T", "G912A", "G924T", "T927C", "C939A", "C942T", "G954T", "T963C", "T981C", "A990G", "T1008A", "A1017T", "G1023A", "T1026G", "T1038C", "G1083A", "G1101A", "A1113G", "C1119A", "A1141C", "G1158A", "A1200C", "T1257C", "G1263A", "T1275C", "T1287C", "G1293T", "G1299A", "A1341G", "A1345T", "T1350G", "A1352T", "A1355T", "T1356C", "C1397A", "T1427C", "G1433A", "T1436-", "G1437-", "T1439G", "A1440T", "A1441G", "T1449C", "C1450A", "A1472G", "C1476T", "C1479-", "T1480-", "C1504T", "T1511C", "T1517G", "A1532T", "T1571G", "A1576G", "C1578A", "A1579G", "T1585A", "A1586T", "T1589A", "A1594G", "T1595A", "A1597G", "T1602A", "T1620A", "T1627G", "T1628A", "T1629G", "T1631C", "-1633A", "-1634T", "-1636T", "A1638T", "A1641-", "T1649G", "T1654-", "G1666T", "G1674T", "A1677T", "A1686-", "T1689-", "T1690-", "A1691-", "T1696C", "A1711G", "T1719C", "G1721A", "T1769-", "A1777-", "C1791A", "C1794A", "A1815T", "C1840T"], "N": ["P253L", "E274D", "T289I"], "NSs": ["S35L", "N38S", "Q40R"]}, "labels": {"aa": "N: P253L, E274D, T289I; NSs: S35L, N38S, Q40R"}}, "children": [{"name": "PP_006VLUU|Ol22996|nan/XXXX-XX-XX", "node_attrs": {"div": 0.130147, "strain": {"value": "PP_006VLUU|Ol22996|nan/XXXX-XX-XX"}, "accession": "PP_006VLUU", "author": {"author": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C.", "value": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Calderon et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "1997-12-01"}, "length": {"value": 1919}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "University of Nevada, Microbiology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VLUU.1", "url": "https://pathoplexus.org/seq/PP_006VLUU.1"}, "INSDC_accession": {"value": "AF482715.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF482715.1"}, "host": {"value": "mice and others"}}, "branch_attrs": {"mutations": {"nuc": ["G483A", "A1514G", "G1543T", "G1547C", "T1548A", "T1554A", "T1559G", "A1565G", "T1568A", "T1635G", "-1639G", "T1640-"]}}}, {"name": "PP_006VP38|AND Nort|nan/XXXX-XX-XX", "node_attrs": {"div": 0.135038, "strain": {"value": "PP_006VP38|AND Nort|nan/XXXX-XX-XX"}, "accession": "PP_006VP38", "author": {"author": "Gonzalez Della Valle, M.; Edelstein, A.; Miguel, S.; Martinez, V.; Cortez, J.; Cacace, M. L.; Jurgelenas, G.; Sosa Estani, S.; Padula, P.; Gonzalez Della Valle, M. O.; Miguel, S. D. L.; Martinez, V. P.; Cortes, J.; Cacace, M.; Padula, P. J.", "value": "Gonzalez Della Valle, M.; Edelstein, A.; Miguel, S.; Martinez, V.; Cortez, J.; Cacace, M. L.; Jurgelenas, G.; Sosa Estani, S.; Padula, P.; Gonzalez Della Valle, M. O.; Miguel, S. D. L.; Martinez, V. P.; Cortes, J.; Cacace, M.; Padula, P. J."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Gonzalez Della Valle et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2001-02-19"}, "length": {"value": 1921}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Instituto Nacional de Enfermedades Infecciosas, A.N.L.I.S. Dr. Carlos G. Malbran, Departamento de Virologia"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VP38.1", "url": "https://pathoplexus.org/seq/PP_006VP38.1"}, "INSDC_accession": {"value": "AF325966.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF325966.1"}, "host": {"value": "Chacoan pygmy rice rat"}}, "branch_attrs": {"mutations": {"nuc": ["G312A", "A318G", "T693C", "C760T", "C945T", "C1151A", "C1242T", "A1353T", "G1354A", "C1356A", "T1533C", "A1546T", "T1550A", "T1555A", "T1560A", "A1562G", "G1566A", "T1567G", "T1569A", "-1641G", "T1673C", "C1756A", "C1800T"], "N": ["S370Y"]}, "labels": {"aa": "N: S370Y"}}}]}, {"name": "NODE_0000008", "node_attrs": {"div": 0.0796753, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G66A", "C328T", "A401G", "C459T", "A478C", "A540G", "T552C", "A630C", "T786C", "G855A", "C933T", "C945A", "T948C", "C1042T", "T1044A", "C1308T", "A1357G", "T1538A", "T1570G", "T1697A", "G1715T", "T1761C", "C1816A", "C1818A", "T1834C"], "N": ["K120R"]}, "labels": {"aa": "N: K120R"}}, "children": [{"name": "NODE_0000009", "node_attrs": {"div": 0.102176, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G231A", "G234A", "G339C", "A387G", "C441T", "A450G", "T453C", "C454T", "A456G", "C468T", "T474A", "A492G", "A514C", "G558A", "C678A", "A708C", "C760T", "C774T", "T792A", "T819C", "G840A", "G849A", "C939T", "G1011T", "G1083A", "C1135T", "A1137G", "G1140A", "C1161T", "T1224C", "-1636T", "-1657T", "-1658T"], "NSs": ["G37D"]}, "labels": {"aa": "NSs: G37D"}}, "children": [{"name": "PP_006W2BB|Guachipas 2024|Argentina/2024-XX-XX", "node_attrs": {"div": 0.173432, "strain": {"value": "PP_006W2BB|Guachipas 2024|Argentina/2024-XX-XX"}, "accession": "PP_006W2BB", "author": {"author": "Bellomo, C. M.; Kehl, S.; Alonso, D. O.; Lopez, W.; Cassinelli, F.; Coelho, R. M.; Bravo, G.; Aguirre, S.; Dib, M.; Periolo, N.; Toscano, C.; Gil, J.; Garcia Campos, F.; Ferro, I.; Martinez, V. P.; Kehl, S. D.", "value": "Bellomo, C. M.; Kehl, S.; Alonso, D. O.; Lopez, W.; Cassinelli, F.; Coelho, R. M.; Bravo, G.; Aguirre, S.; Dib, M.; Periolo, N.; Toscano, C.; Gil, J.; Garcia Campos, F.; Ferro, I.; Martinez, V. P.; Kehl, S. D."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2024-XX-XX"}, "abbr_authors": {"value": "Bellomo et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-10"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Guachipas, Salta"}, "length": {"value": 1253}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W2BB.1", "url": "https://pathoplexus.org/seq/PP_006W2BB.1"}, "INSDC_accession": {"value": "PQ181488.2", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PQ181488.2"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["G33A", "C50A", "T117A", "A129G", "G135A", "G156A", "C168T", "C172T", "C244T", "A258G", "C310T", "A318G", "T327G", "T342C", "C357T", "T366C", "T381C", "T408C", "C421T", "A423G", "A438G", "T441A", "C444T", "T465C", "G477A", "C478A", "G483A", "T486A", "C495T", "G504A", "A510G", "G522A", "G543A", "C552A", "C556A", "A621C", "C636T", "A637C", "T690C", "T711C", "C720T", "G729T", "C735T", "A744G", "A753G", "C767G", "C780T", "G789A", "G795A", "T798A", "A807G", "G817T", "A828G", "C843T", "A850C", "T879C", "C891T", "G906A", "A918C", "C922T", "A966C", "T1008C", "T1014C", "G1023T", "G1036T", "A1056G", "G1077A", "T1092A", "C1125T", "G1128A", "C1134T", "A1141C", "A1149G", "T1152C", "C1170T", "A1173G", "C1191T", "A1197C", "A1200G", "G1209A", "A1212G", "G1218A", "C1227T", "T1230C", "T1236A"], "N": ["T3N", "A242G", "A259S", "A332S"], "NSs": ["K3R", "R5Q", "R12K", "A16V", "K46R"]}, "labels": {"aa": "N: T3N, A242G, A259S, A332S; NSs: K3R, R5Q, R12K, A16V, K46R"}}}, {"name": "NODE_0000010", "node_attrs": {"div": 0.126764, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A219G", "G312A", "A321G", "T327C", "A333G", "G378A", "T384A", "G403T", "C417T", "A480G", "C571T", "A582C", "C654T", "A675G", "G714A", "A777T", "T831C", "C838T", "A864G", "A876G", "G885T", "C942T", "A960G", "C984T", "G1020A", "T1029A", "T1038C", "T1188C", "C1206G", "C1242T", "A1305C", "C1360T", "C1398-", "T1425G", "A1468G", "T1512A", "A1539G", "T1569A", "T1577G", "T1592G", "T1595A", "T1602G", "A1632-", "G1659A", "G1674A", "T1696A", "T1714A", "C1768T", "T1769C", "A1777C"], "N": ["A121S"], "NSs": ["E33G"]}, "labels": {"aa": "N: A121S; NSs: E33G"}}, "children": [{"name": "NODE_0000011", "node_attrs": {"div": 0.147708, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G330A", "A426C", "A435C", "G540A", "T564C", "G672T", "G705A", "G729A", "T756C", "T781C", "C786A", "C822T", "T825C", "C837T", "C843T", "A852G", "C1021T", "T1059C", "A1071T", "A1086G", "C1195T", "G1209A", "T1335G", "T1346A", "G1351T", "C1365T", "-1401T", "T1404C", "A1431G", "G1527T", "G1542T", "G1543-", "T1580G", "-1639T", "T1640C", "T1644A", "T1660A", "G1670A", "A1672-", "A1678G", "G1680A", "T1683C", "A1684T", "-1685T", "-1687G", "-1688G", "C1791A", "A1815C"]}}, "children": [{"name": "PP_006VR7Y|Neembucu|Paraguay/XXXX-XX-XX", "node_attrs": {"div": 0.191932, "strain": {"value": "PP_006VR7Y|Neembucu|Paraguay/XXXX-XX-XX"}, "accession": "PP_006VR7Y", "author": {"author": "Chu, Y. K.; Milligan, B.; Owen, R. D.; Goodin, D. G.; Jonsson, C. B.; Chu, Y.-K.", "value": "Chu, Y. K.; Milligan, B.; Owen, R. D.; Goodin, D. G.; Jonsson, C. B.; Chu, Y.-K."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Chu et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2006-01-25"}, "country": {"value": "Paraguay"}, "region": {"value": "South America"}, "length": {"value": 1931}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Southern Research Institute, Viral Biochemistry"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VR7Y.1", "url": "https://pathoplexus.org/seq/PP_006VR7Y.1"}, "INSDC_accession": {"value": "DQ345763.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/DQ345763.1"}, "host": {"value": "Chacoan pygmy rice rat"}}, "branch_attrs": {"mutations": {"nuc": ["T72C", "A90G", "A272G", "T342C", "A384G", "T393C", "T396C", "G411A", "G450A", "G456A", "C472A", "A510G", "A534T", "G579A", "C630T", "G633A", "T634C", "C636T", "C657A", "T672C", "A681G", "A683G", "C687T", "T690C", "T711C", "A750T", "T774C", "A783G", "A786G", "A828G", "A850C", "G876A", "C888T", "T909C", "T927C", "G960A", "T981C", "C996T", "C1032T", "T1071C", "G1077A", "A1113G", "C1119T", "G1137A", "A1149G", "T1152C", "A1182C", "A1197G", "A1200T", "G1206A", "T1236G", "A1272G", "G1296A", "T1318C", "A1331T", "T1334C", "G1335A", "T1338A", "A1342G", "T1350C", "C1378A", "A1379T", "A1440G", "A1481G", "A1526C", "A1531G", "A1532T", "T1533A", "A1538G", "T1545A", "T1549C", "T1550C", "C1578A", "G1580A", "A1582T", "T1588G", "G1592A", "A1608G", "A1611G", "T1629G", "-1634G", "A1645G", "T1646G", "G1648T", "T1651A", "A1652G", "A1653T", "A1669T", "T1671A", "-1672T", "T1673C", "A1705G", "G1734A", "C1756T", "T1768C", "C1769A", "T1787C", "C1797T", "C1802T", "T1805A", "C1815T", "T1867A"], "N": ["K77R", "F198L", "N214S"], "NSs": ["N51D"]}, "labels": {"aa": "N: K77R, F198L, N214S; NSs: N51D"}}}, {"name": "PP_006VQ45|Oc22531|nan/XXXX-XX-XX", "node_attrs": {"div": 0.179288, "strain": {"value": "PP_006VQ45|Oc22531|nan/XXXX-XX-XX"}, "accession": "PP_006VQ45", "author": {"author": "Bohlman, M. C.; Morzunov, S. P.; Meissner, J.; Taylor, M. B.; Ishibashi, K.; Rowe, J.; Levis, S.; Enria, D.; St Jeor, S. C.; St. Jeor, S. C.", "value": "Bohlman, M. C.; Morzunov, S. P.; Meissner, J.; Taylor, M. B.; Ishibashi, K.; Rowe, J.; Levis, S.; Enria, D.; St Jeor, S. C.; St. Jeor, S. C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Bohlman et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2002-02-27"}, "length": {"value": 1933}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "University of Nevada, Reno, Microbiology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VQ45.1", "url": "https://pathoplexus.org/seq/PP_006VQ45.1"}, "INSDC_accession": {"value": "AF482713.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF482713.1"}, "host": {"value": "Chacoan pygmy rice rat"}}, "branch_attrs": {"mutations": {"nuc": ["T117C", "A213G", "C244T", "T441C", "A474C", "G480T", "G492A", "C498T", "C507T", "C519T", "T570C", "A597G", "C630G", "T654C", "C708T", "G732A", "C735T", "C759T", "G846A", "A858G", "A903G", "C922T", "A930G", "T1005C", "T1008C", "C1041T", "A1044G", "C1065T", "A1083T", "G1101A", "G1110A", "A1173G", "C1185T", "C1227T", "T1257C", "T1266C", "T1275C", "A1328G", "C1333T", "A1341T", "T1349A", "T1351C", "A1381-", "T1428C", "T1460A", "C1462T", "G1468A", "C1483T", "A1512C", "G1530A", "G1535T", "G1536T", "G1541C", "T1542C", "T1552G", "T1555-", "T1556-", "G1558A", "G1577T", "C1578T", "G1583C", "A1586G", "G1591A", "A1607C", "T1621C", "-1632A", "A1645-", "-1655C", "T1676C", "G1679T", "T1682C", "A1711G", "C1767T", "A1790C", "C1794A"], "NSs": ["N31S"]}, "labels": {"aa": "NSs: N31S"}}}]}, {"name": "NODE_0000012", "node_attrs": {"div": 0.139895, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C345T", "T408C", "A474G", "C507A", "A588C", "G615A", "G633A", "T717C", "G789A", "A855G", "A858T", "T1042C", "C1050T", "C1104G", "G1218A", "C1397T", "T1567A", "A1582G", "T1628C", "T1629A", "-1634G", "A1641C", "-1655A", "A1659T", "A1674T", "A1686-"]}}, "children": [{"name": "PP_006W29F|URU_1|Uruguay/1996-XX-XX", "node_attrs": {"div": 0.181816, "strain": {"value": "PP_006W29F|URU_1|Uruguay/1996-XX-XX"}, "accession": "PP_006W29F", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "1996-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-23"}, "country": {"value": "Uruguay"}, "region": {"value": "South America"}, "length": {"value": 1934}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W29F.1", "url": "https://pathoplexus.org/seq/PP_006W29F.1"}, "INSDC_accession": {"value": "PP504848.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP504848.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["A28G", "G33T", "A129G", "C225T", "C244T", "G369T", "A378G", "G387A", "T393C", "T417C", "A426G", "T465C", "T468C", "C478T", "C489T", "C495T", "A510G", "T525C", "T528C", "C546T", "T571C", "C582T", "A597G", "G618A", "A642G", "A681G", "A714G", "C720T", "A792T", "A810G", "T858C", "T861C", "T894C", "C897T", "C922T", "T927C", "T984C", "A990G", "C1021T", "A1056G", "A1071T", "G1101A", "C1102T", "G1107A", "C1119T", "G1137A", "A1146G", "G1176A", "C1188T", "G1206A", "T1266A", "A1272G", "T1281C", "C1305T", "T1318C", "A1320G", "A1341G", "C1344G", "A1345C", "A1348T", "T1350G", "A1352T", "A1355G", "A1359G", "C1364T", "-1398C", "T1510G", "A1516G", "G1529A", "G1530T", "A1531T", "T1533G", "A1537T", "G1539A", "G1543T", "A1551G", "T1554A", "T1560C", "G1577A", "T1588G", "T1644A", "A1645G", "-1656A", "T1657G", "T1658G", "T1662A", "A1664C", "G1666-", "T1673C", "T1674C", "T1675C", "A1677T", "T1689-", "T1690-", "A1691-", "A1738G", "C1756T", "C1777A", "A1792T", "T1804A", "A1815T", "A1816C", "A1818C", "C1834T", "C1840T"], "N": ["R146W"], "NSs": ["K3R", "S35L"]}, "labels": {"aa": "N: R146W; NSs: K3R, S35L"}}}, {"name": "NODE_0000013", "node_attrs": {"div": 0.16908, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T202C", "T328C", "G333A", "G369A", "G402A", "A423T", "A447C", "C519T", "G522A", "G579A", "G672C", "G675A", "A678T", "C735T", "T798A", "T834C", "A840G", "G846A", "A850C", "C873T", "T879C", "T939A", "C1038T", "A1062G", "A1098G", "G1110A", "G1158A", "C1170T", "C1191T", "A1212G", "C1221T", "C1227T", "T1275C", "T1284C", "A1311G", "G1339T", "G1357T", "A1379T", "-1401T", "C1462T", "G1541A", "G1542A", "A1551T", "T1552C", "T1572G", "A1586G", "G1591A", "A1593T", "A1595G", "T1630A", "T1649G", "T1650-", "T1651A", "A1652T", "-1656G", "G1680T", "C1761T", "C1763T", "C1794A"]}}, "children": [{"name": "PP_006W100|Lechiguanas|Argentina/2022-XX-XX", "node_attrs": {"div": 0.181783, "strain": {"value": "PP_006W100|Lechiguanas|Argentina/2022-XX-XX"}, "accession": "PP_006W100", "author": {"author": "Bellomo, C. M.; Alonso, D. O.; Martinez, V. P.; Sanchez Loria, J.; Campos, J.", "value": "Bellomo, C. M.; Alonso, D. O.; Martinez, V. P.; Sanchez Loria, J.; Campos, J."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2022-XX-XX"}, "abbr_authors": {"value": "Bellomo et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-07-01"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1938}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "INEI-ANLIS \"Dr C. G. Malbran\", Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W100.1", "url": "https://pathoplexus.org/seq/PP_006W100.1"}, "INSDC_accession": {"value": "OR890439.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR890439.1"}, "host": {"value": "yellow pygmy rice rat"}}, "branch_attrs": {"mutations": {"nuc": ["A71G", "C216T", "A438G", "G618A", "A681G", "G876A", "T909C", "T969C", "T997C", "C1054A", "T1059C", "A1182C", "G1209A", "T1233C", "T1242C", "T1335G", "T1428C", "A1467G", "T1510C", "G1530T", "G1535T", "G1536C", "A1541T", "A1542C", "G1543A", "T1545-", "T1549C", "T1550C", "T1551C", "C1552A", "T1556-", "A1653T", "G1670A", "A1672T", "T1673A", "A1678T", "G1679T", "T1680C", "T1683C", "-1685T", "-1686T", "-1687T", "-1688T", "A1714C"], "N": ["N10S"], "NSs": ["S32L"]}, "labels": {"aa": "N: N10S; NSs: S32L"}}}, {"name": "NODE_0000014", "node_attrs": {"div": 0.181415, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C360T", "T414A", "A426G", "T454C", "A513C", "G567A", "C588T", "C657T", "C660T", "C897T", "T900C", "T1008C", "C1032T", "C1041T", "A1140G", "A1272G", "T1404C", "A1461G", "G1468T", "T1507C", "A1526C", "G1527T", "A1532T", "G1534A", "A1537G", "A1538G", "G1539T", "T1554A", "T1559C", "T1560C", "T1612C", "T1671C", "T1675C", "A1677T", "A1684-"]}}, "children": [{"name": "NODE_0000015", "node_attrs": {"div": 0.182372, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A1056G", "G1062A"]}}, "children": [{"name": "PP_006W1D8|ER19-SP1693|Argentina/2019-XX-XX", "node_attrs": {"div": 0.19338, "strain": {"value": "PP_006W1D8|ER19-SP1693|Argentina/2019-XX-XX"}, "accession": "PP_006W1D8", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2019-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Entre Rios"}, "length": {"value": 1925}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W1D8.1", "url": "https://pathoplexus.org/seq/PP_006W1D8.1"}, "INSDC_accession": {"value": "OR908896.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908896.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["C447T", "T465C", "A627T", "C672T", "G732A", "T942C", "C996T", "T997C", "C1008A", "G1137A", "T1227C", "G1278A", "T1287C", "A1317G", "T1335-", "T1339A", "A1342T", "G1347C", "T1349C", "T1356A", "T1357A", "T1360G", "C1404T", "G1602A", "C1769T"]}}}, {"name": "PP_006VLSY|Of22819|nan/XXXX-XX-XX", "node_attrs": {"div": 0.191029, "strain": {"value": "PP_006VLSY|Of22819|nan/XXXX-XX-XX"}, "accession": "PP_006VLSY", "author": {"author": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C.", "value": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Calderon et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "1997-12-01"}, "length": {"value": 1938}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "University of Nevada, Microbiology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VLSY.1", "url": "https://pathoplexus.org/seq/PP_006VLSY.1"}, "INSDC_accession": {"value": "AF482714.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF482714.1"}, "host": {"value": "yellow pygmy rice rat"}}, "branch_attrs": {"mutations": {"nuc": ["C339T", "C408T", "G456A", "A531T", "C636T", "T760C", "C879A", "C922T", "G954A", "T984C", "A1164G", "T1428C", "G1461T", "T1551C", "C1552A", "A1554G", "T1556-", "A1645G", "A1696G", "T1719C", "T1833C", "C1834T"], "N": ["D279E"]}, "labels": {"aa": "N: D279E"}}}]}, {"name": "NODE_0000016", "node_attrs": {"div": 0.184291, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A240C", "A534T", "C1305T"], "NSs": ["Q40P"]}, "labels": {"aa": "NSs: Q40P"}}, "children": [{"name": "PP_006W1Y3|15631_S|Argentina|1998|Argentina/1998-XX-XX", "node_attrs": {"div": 0.192038, "strain": {"value": "PP_006W1Y3|15631_S|Argentina|1998|Argentina/1998-XX-XX"}, "accession": "PP_006W1Y3", "author": {"author": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J.", "value": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "1998-XX-XX"}, "abbr_authors": {"value": "Shedroff et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-04-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 2122}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Centers for Disease Control and Prevention, Viral Special Pathogens Branch"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W1Y3.1", "url": "https://pathoplexus.org/seq/PP_006W1Y3.1"}, "INSDC_accession": {"value": "PP058740.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP058740.1"}}, "branch_attrs": {"mutations": {"nuc": ["G179A", "C310T", "C472T", "T534C", "C552T", "G795A", "A1017G", "T1050C", "T1191C", "T1281C", "T1356G", "C1392T", "C1559T", "T1803C"], "N": ["S46N", "R144W"], "NSs": ["V20I"]}, "labels": {"aa": "N: S46N, R144W; NSs: V20I"}}}, {"name": "NODE_0000017", "node_attrs": {"div": 0.185136, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T306C"], "NSs": ["I62T"]}, "labels": {"aa": "NSs: I62T"}}, "children": [{"name": "PP_006W1E6|BA18-RR1620|Argentina/2018-XX-XX", "node_attrs": {"div": 0.190613, "strain": {"value": "PP_006W1E6|BA18-RR1620|Argentina/2018-XX-XX"}, "accession": "PP_006W1E6", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2018-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1911}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W1E6.1", "url": "https://pathoplexus.org/seq/PP_006W1E6.1"}, "INSDC_accession": {"value": "OR908897.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908897.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["C216T", "A318G", "C339T", "T363C", "G426A", "T588C", "T1276C", "T1349G", "T1350A", "T1356A", "T1357A", "A1554G", "T1739C", "A1794C"], "NSs": ["S32L"]}, "labels": {"aa": "NSs: S32L"}}}, {"name": "PP_006W1F4|BA18-LD1633|Argentina/2018-XX-XX", "node_attrs": {"div": 0.192184, "strain": {"value": "PP_006W1F4|BA18-LD1633|Argentina/2018-XX-XX"}, "accession": "PP_006W1F4", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2018-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1889}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W1F4.1", "url": "https://pathoplexus.org/seq/PP_006W1F4.1"}, "INSDC_accession": {"value": "OR908898.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908898.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["C453T", "C454T", "C478A", "T537C", "T549C", "T571C", "A753G", "G960A", "A1218G", "C1526A", "T1527G", "G1530T", "T1532A", "A1534G", "G1535T", "G1536T", "G1537A", "G1538A", "T1539G", "A1541C", "A1542C", "G1543A", "T1545-", "A1714C", "C1791A", "C1834T"]}}}]}]}]}]}]}]}]}, {"name": "NODE_0000018", "node_attrs": {"div": 0.14915, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G33A", "A240C", "C310T", "T327A", "A331C", "A333T", "C345G", "T384C", "G411A", "A423T", "A432T", "A435T", "A438C", "A447T", "C471T", "G504A", "C546T", "C555T", "C556A", "T564C", "G567A", "C571T", "G573A", "T612A", "G618A", "C630T", "C678T", "T693C", "C699G", "G729T", "G732A", "C759T", "C780T", "A783G", "G795A", "A807G", "C813T", "T825C", "T831A", "C838T", "A852G", "A858C", "T861C", "A867T", "A870G", "A882T", "C889T", "C891A", "C897T", "G912A", "A915G", "A975G", "A990G", "C996A", "A999G", "T1008C", "T1014C", "A1017T", "G1023A", "T1029A", "C1041T", "A1044G", "G1047A", "A1056G", "G1077A", "C1104T", "A1131T", "A1137C", "G1143A", "A1146G", "T1152A", "G1158A", "C1170T", "A1173G", "T1188C", "A1197C", "T1248C", "G1254A", "T1257G", "A1260G", "A1320G", "T1334C", "T1335A", "A1340T", "T1343C", "C1344A", "A1345G", "G1347A", "T1349C", "A1352G", "A1359T", "C1365T", "T1373A", "-1399T", "C1402-", "T1403-", "A1418G", "A1473-", "A1492G", "T1511C", "A1526C", "G1527-", "G1528-", "G1529-", "G1530-", "A1531-", "A1532-", "G1534T", "A1537G", "A1538G", "A1539T", "T1544A", "G1547A", "T1549G", "T1550G", "A1551G", "T1555A", "G1561C", "T1572A", "A1576G", "A1579C", "A1582G", "T1589A", "T1612A", "-1655T", "T1660-", "G1661-", "A1669C", "G1670A", "T1671A", "A1672T", "G1679T", "A1684T", "-1685T", "-1687G", "-1688G", "T1707C", "A1711T", "T1712A", "A1713C", "T1715C", "C1716T", "C1717-", "T1755C", "C1756T", "A1792T", "T1805A", "T1831A", "T1870C"], "NSs": ["N38S", "Q40P"]}, "labels": {"aa": "NSs: N38S, Q40P"}}, "children": [{"name": "NODE_0000019", "node_attrs": {"div": 0.157468, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A33T", "A90G", "A321G", "C367T", "G378A", "A675G", "T717C", "T768G", "C1161T", "T1236C", "C1324T", "G1354T", "T1356G", "T1423C", "T1630A", "A1632T", "-1633G", "-1634A", "-1639T", "A1645-", "T1651A", "A1652T", "T1654G", "T1655A", "G1659-", "G1674A"]}}, "children": [{"name": "PP_006W1AE|BA10-OE1169|Argentina/2010-XX-XX", "node_attrs": {"div": 0.157469, "strain": {"value": "PP_006W1AE|BA10-OE1169|Argentina/2010-XX-XX"}, "accession": "PP_006W1AE", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2010-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1852}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W1AE.1", "url": "https://pathoplexus.org/seq/PP_006W1AE.1"}, "INSDC_accession": {"value": "OR908893.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908893.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W19G|BA10-GJ1165|Argentina/2010-XX-XX", "node_attrs": {"div": 0.157469, "strain": {"value": "PP_006W19G|BA10-GJ1165|Argentina/2010-XX-XX"}, "accession": "PP_006W19G", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2010-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1838}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W19G.1", "url": "https://pathoplexus.org/seq/PP_006W19G.1"}, "INSDC_accession": {"value": "OR908892.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908892.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["-1745G", "-1746C", "G1751A", "T1754G", "T1756C", "G1757A", "T1759A", "A1760-", "C1761-", "A1762-", "T1764G", "A1766G", "A1778G", "T1784G", "C1795G", "T1798A", "C1799A", "C1801T", "T1808A", "A1815C", "A1820G", "C1822A", "A1831G", "T1833G", "G1835A", "T1841A"]}}}]}, {"name": "NODE_0000020", "node_attrs": {"div": 0.158894, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C244T", "C438T", "C468T", "A510G", "G516A", "C519T", "T528C", "T549C", "A831G", "C1032T", "T1239C", "T1276C", "G1299A", "G1570A", "A1626T", "T1627G", "T1628C", "-1636T", "A1637G", "T1646G", "A1647C", "G1648A", "-1656G", "-1657T", "-1658A", "-1660A", "C1669T"]}}, "children": [{"name": "PP_006W17L|BA16_LJC1557|Argentina/2002-XX-XX", "node_attrs": {"div": 0.16366, "strain": {"value": "PP_006W17L|BA16_LJC1557|Argentina/2002-XX-XX"}, "accession": "PP_006W17L", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1877}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W17L.1", "url": "https://pathoplexus.org/seq/PP_006W17L.1"}, "INSDC_accession": {"value": "OR908890.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908890.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["G345A", "C441T", "G561A", "G990A", "G994A", "C1185A", "C1504T", "C1561T", "T1592C"], "N": ["A318T"]}, "labels": {"aa": "N: A318T"}}}, {"name": "NODE_0000021", "node_attrs": {"div": 0.16004, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A642G"]}}, "children": [{"name": "NODE_0000022", "node_attrs": {"div": 0.164278, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C564T", "A732G", "G831A", "T882C", "T1092C", "T1281C", "G1566A"]}}, "children": [{"name": "NODE_0000023", "node_attrs": {"div": 0.165049, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T1230C"]}}, "children": [{"name": "PP_006W16N|BA02_ROM495|Argentina/2002-XX-XX", "node_attrs": {"div": 0.165825, "strain": {"value": "PP_006W16N|BA02_ROM495|Argentina/2002-XX-XX"}, "accession": "PP_006W16N", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1847}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W16N.1", "url": "https://pathoplexus.org/seq/PP_006W16N.1"}, "INSDC_accession": {"value": "OR908889.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908889.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T447C", "C1834T"]}}}, {"name": "NODE_0000024", "node_attrs": {"div": 0.165052, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W15Q|BA02_AOA490|Argentina/2002-XX-XX", "node_attrs": {"div": 0.165054, "strain": {"value": "PP_006W15Q|BA02_AOA490|Argentina/2002-XX-XX"}, "accession": "PP_006W15Q", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1887}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W15Q.1", "url": "https://pathoplexus.org/seq/PP_006W15Q.1"}, "INSDC_accession": {"value": "OR908888.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908888.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W13U|BA02_RJF487|Argentina/2002-XX-XX", "node_attrs": {"div": 0.165054, "strain": {"value": "PP_006W13U|BA02_RJF487|Argentina/2002-XX-XX"}, "accession": "PP_006W13U", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1794}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W13U.1", "url": "https://pathoplexus.org/seq/PP_006W13U.1"}, "INSDC_accession": {"value": "OR908886.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908886.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000025", "node_attrs": {"div": 0.166618, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G510A", "G1176A", "T1318C", "C1390T"]}}, "children": [{"name": "PP_006W11Y|BA02_VVN481|Argentina/2002-XX-XX", "node_attrs": {"div": 0.168172, "strain": {"value": "PP_006W11Y|BA02_VVN481|Argentina/2002-XX-XX"}, "accession": "PP_006W11Y", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1886}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W11Y.1", "url": "https://pathoplexus.org/seq/PP_006W11Y.1"}, "INSDC_accession": {"value": "OR908884.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908884.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T690C", "C1165T"]}}}, {"name": "NODE_0000026", "node_attrs": {"div": 0.166621, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W14S|BA02_VO483|Argentina/2002-XX-XX", "node_attrs": {"div": 0.166624, "strain": {"value": "PP_006W14S|BA02_VO483|Argentina/2002-XX-XX"}, "accession": "PP_006W14S", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1887}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W14S.1", "url": "https://pathoplexus.org/seq/PP_006W14S.1"}, "INSDC_accession": {"value": "OR908887.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908887.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W12W|BA02_VVD480|Argentina/2002-XX-XX", "node_attrs": {"div": 0.167397, "strain": {"value": "PP_006W12W|BA02_VVD480|Argentina/2002-XX-XX"}, "accession": "PP_006W12W", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1881}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W12W.1", "url": "https://pathoplexus.org/seq/PP_006W12W.1"}, "INSDC_accession": {"value": "OR908885.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908885.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T663C"]}}}]}]}]}, {"name": "NODE_0000027", "node_attrs": {"div": 0.161665, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C489T", "T546C"]}}, "children": [{"name": "NODE_0000028", "node_attrs": {"div": 0.162844, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T117C", "T1092C", "A1570C", "C1628T", "G1637-", "A1638-"]}}, "children": [{"name": "PP_006W18J|BA17_SD1583|Argentina/2002-XX-XX", "node_attrs": {"div": 0.163622, "strain": {"value": "PP_006W18J|BA17_SD1583|Argentina/2002-XX-XX"}, "accession": "PP_006W18J", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1836}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W18J.1", "url": "https://pathoplexus.org/seq/PP_006W18J.1"}, "INSDC_accession": {"value": "OR908891.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908891.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["C1242T", "T1626A", "G1627T", "T1630A", "A1632C", "-1633G", "-1634A", "T1636-", "T1640-", "A1775G", "T1853G", "T1854A"]}}}, {"name": "NODE_0000029", "node_attrs": {"div": 0.167521, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A33T", "A372G", "A387G", "G924A", "A1095G", "T1230C", "G1320A", "G1394A", "G1411A", "T1635-", "-1637C", "-1638G", "-1639A", "C1834T"]}}, "children": [{"name": "PP_006W1CA|BA11-IM1254|Argentina/2011-XX-XX", "node_attrs": {"div": 0.167522, "strain": {"value": "PP_006W1CA|BA11-IM1254|Argentina/2011-XX-XX"}, "accession": "PP_006W1CA", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2011-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1844}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W1CA.1", "url": "https://pathoplexus.org/seq/PP_006W1CA.1"}, "INSDC_accession": {"value": "OR908895.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908895.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W1BC|BA11-MH1249|Argentina/2011-XX-XX", "node_attrs": {"div": 0.167522, "strain": {"value": "PP_006W1BC|BA11-MH1249|Argentina/2011-XX-XX"}, "accession": "PP_006W1BC", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2011-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1843}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W1BC.1", "url": "https://pathoplexus.org/seq/PP_006W1BC.1"}, "INSDC_accession": {"value": "OR908894.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908894.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000030", "node_attrs": {"div": 0.165163, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G339A", "A765G", "A921C", "C1206T"]}}, "children": [{"name": "PP_006W0Z2|BA02_SMM484|Argentina/2002-XX-XX", "node_attrs": {"div": 0.165164, "strain": {"value": "PP_006W0Z2|BA02_SMM484|Argentina/2002-XX-XX"}, "accession": "PP_006W0Z2", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-12-31"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1881}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0Z2.1", "url": "https://pathoplexus.org/seq/PP_006W0Z2.1"}, "INSDC_accession": {"value": "OR875982.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR875982.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000031", "node_attrs": {"div": 0.165164, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W28H|BA02_SMM478|Argentina/2002-XX-XX", "node_attrs": {"div": 0.165164, "strain": {"value": "PP_006W28H|BA02_SMM478|Argentina/2002-XX-XX"}, "accession": "PP_006W28H", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-23"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1848}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W28H.1", "url": "https://pathoplexus.org/seq/PP_006W28H.1"}, "INSDC_accession": {"value": "PP504847.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP504847.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["A1846C", "T1848G", "G1849T", "T1852C"]}}}, {"name": "PP_006W0UC|Arg-h484|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165164, "strain": {"value": "PP_006W0UC|Arg-h484|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0UC", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-10-10"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1881}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0UC.1", "url": "https://pathoplexus.org/seq/PP_006W0UC.1"}, "INSDC_accession": {"value": "OP555730.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555730.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000032", "node_attrs": {"div": 0.0408272, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A133G", "G156C", "G234A", "A387G", "A420C", "C421T", "G483A", "A510G", "A603T", "T663A", "A669G", "A679C", "G729A", "G846A", "A870G", "C873T", "T894A", "A918T", "C942A", "G954C", "T978C", "G1077A", "C1104A", "G1128A", "T1257A", "A1260G", "A1305C", "C1324T"], "N": ["E38D"], "NSs": ["K3R", "R12T"]}, "labels": {"aa": "N: E38D; NSs: K3R, R12T"}}, "children": [{"name": "NODE_0000033", "node_attrs": {"div": 0.116178, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C50A", "G66A", "A90G", "G135A", "C172T", "A183G", "C184A", "T202C", "G231A", "C244A", "A321G", "A324T", "T363C", "T366C", "T393A", "T405A", "T414C", "A426T", "T435C", "C441A", "C445T", "T453A", "A456G", "C468T", "T474A", "A492G", "C534T", "A540G", "C546A", "G558A", "C579A", "A594C", "T603C", "T636C", "C678A", "A708C", "T717C", "C720T", "A750T", "C767A", "A777T", "T786A", "G795A", "G796T", "T798A", "T819A", "C822T", "T831A", "G840T", "C843T", "A864T", "T867A", "T909A", "A933T", "C939T", "A960T", "C984T", "G1011T", "A1014C", "A1017T", "A1020G", "C1021T", "T1044C", "T1059C", "A1095G", "C1102T", "A1104G", "C1119T", "C1122T", "C1134T", "A1137T", "A1164G", "G1167T", "C1170T", "G1176A", "A1182C", "C1185T", "C1191T", "C1195T", "A1197G", "A1200C", "T1206G", "G1218A", "T1224C", "T1233C", "T1236A", "A1272G", "T1275A", "G1296A", "G1323A", "A1329G"], "N": ["T3N", "L68M", "A242D", "T252S", "E274D", "E297D", "S411A"], "NSs": ["D21G", "G37D"]}, "labels": {"aa": "N: T3N, L68M, A242D, T252S, E274D, E297D, S411A; NSs: D21G, G37D"}}, "children": [{"name": "PP_006VX06|769|Peru/2010-XX-XX", "node_attrs": {"div": 0.16677, "strain": {"value": "PP_006VX06|769|Peru/2010-XX-XX"}, "accession": "PP_006VX06", "author": {"author": "Razuri, H.; Tokarz, R.; Ghersi, B. M.; Salmon-Mulanovich, G.; Guezala, M. C.; Albujar, C.; Mendoza, A. P.; Tinoco, Y. O.; Cruz, C.; Silva, M.; Vasquez, A.; Pacheco, V.; Stroher, U.; Guerrero, L. W.; Cannon, D.; Nichol, S. T.; Hirschberg, D. L.; Lipkin, W. I.; Bausch, D. G.; Montgomery, J. M.", "value": "Razuri, H.; Tokarz, R.; Ghersi, B. M.; Salmon-Mulanovich, G.; Guezala, M. C.; Albujar, C.; Mendoza, A. P.; Tinoco, Y. O.; Cruz, C.; Silva, M.; Vasquez, A.; Pacheco, V.; Stroher, U.; Guerrero, L. W.; Cannon, D.; Nichol, S. T.; Hirschberg, D. L.; Lipkin, W. I.; Bausch, D. G.; Montgomery, J. M."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2010-XX-XX"}, "abbr_authors": {"value": "Razuri et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2014-03-16"}, "country": {"value": "Peru"}, "region": {"value": "South America"}, "length": {"value": 1068}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Columbia University, Center for Infection and Immunity"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VX06.1", "url": "https://pathoplexus.org/seq/PP_006VX06.1"}, "INSDC_accession": {"value": "KF581134.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/KF581134.1"}, "host": {"value": "bristly mouse"}}, "branch_attrs": {"mutations": {"nuc": ["A63G", "T72C", "A111G", "C188G", "A219G", "A222G", "C345T", "C346T", "G348A", "G369A", "G378A", "A401G", "C417T", "T429C", "A447G", "C489G", "C495T", "C507T", "G522A", "T528C", "A543G", "A546G", "G561A", "A564T", "G573A", "A579G", "A588G", "A630C", "T645A", "A648T", "T651C", "C660T", "T711C", "C723T", "C735T", "G747A", "T756C", "G763T", "T781C", "T792G", "A807G", "G828A", "A858G", "A867G", "C879T", "C889T", "G891A", "G912A", "G924A", "T927C", "T933C", "C1014T", "T1017C"], "N": ["A49G", "K120R", "A241S", "D242E"], "NSs": ["Q23E", "E33G", "N34S"]}, "labels": {"aa": "N: A49G, K120R, A241S, D242E; NSs: Q23E, E33G, N34S"}}}, {"name": "NODE_0000034", "node_attrs": {"div": 0.159819, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T61C", "G132A", "G142A", "A240G", "C354T", "A372G", "T384C", "T396C", "G402A", "G403T", "C444T", "C454T", "C498T", "T519C", "A531G", "G567A", "C654T", "T684C", "C687T", "T690C", "T696C", "G732A", "A744G", "A745C", "A768T", "A783G", "G849A", "G855A", "A876G", "G885A", "G906A", "T1026G", "C1032T", "T1038A", "G1047A", "C1050T", "T1089A", "G1101A", "A1113G", "C1125T"], "N": ["V34M", "A121S"], "NSs": ["R4K", "Q40R"]}, "labels": {"aa": "N: V34M, A121S; NSs: R4K, Q40R"}}, "children": [{"name": "PP_006VVXD|FVB799|Bolivia/2009-XX-XX", "node_attrs": {"div": 0.161199, "strain": {"value": "PP_006VVXD|FVB799|Bolivia/2009-XX-XX"}, "accession": "PP_006VVXD", "author": {"author": "Cruz, C. D.; Forshey, B. M.; Vallejo, E.; Agudo, R.; Vargas, J.; Blazes, D. L.; Guevara, C.; Laguna-Torres, V. A.; Halsey, E. S.; Kochel, T. J.; Laguna, V. A.; Guevara, C. L.", "value": "Cruz, C. D.; Forshey, B. M.; Vallejo, E.; Agudo, R.; Vargas, J.; Blazes, D. L.; Guevara, C.; Laguna-Torres, V. A.; Halsey, E. S.; Kochel, T. J.; Laguna, V. A.; Guevara, C. L."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2009-XX-XX"}, "abbr_authors": {"value": "Cruz et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2011-09-21"}, "country": {"value": "Bolivia"}, "region": {"value": "South America"}, "length": {"value": 1287}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "NAMRU-6, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VVXD.1", "url": "https://pathoplexus.org/seq/PP_006VVXD.1"}, "INSDC_accession": {"value": "JF750417.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/JF750417.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["A66G", "G129A"], "NSs": ["R3K"]}, "labels": {"aa": "NSs: R3K"}}}, {"name": "NODE_0000035", "node_attrs": {"div": 0.160782, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A597G"]}}, "children": [{"name": "PP_006VVYB|FVB640|Bolivia/2008-XX-XX", "node_attrs": {"div": 0.162349, "strain": {"value": "PP_006VVYB|FVB640|Bolivia/2008-XX-XX"}, "accession": "PP_006VVYB", "author": {"author": "Cruz, C. D.; Forshey, B. M.; Vallejo, E.; Agudo, R.; Vargas, J.; Blazes, D. L.; Guevara, C.; Laguna-Torres, V. A.; Halsey, E. S.; Kochel, T. J.; Laguna, V. A.; Guevara, C. L.", "value": "Cruz, C. D.; Forshey, B. M.; Vallejo, E.; Agudo, R.; Vargas, J.; Blazes, D. L.; Guevara, C.; Laguna-Torres, V. A.; Halsey, E. S.; Kochel, T. J.; Laguna, V. A.; Guevara, C. L."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2008-XX-XX"}, "abbr_authors": {"value": "Cruz et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2011-09-21"}, "country": {"value": "Bolivia"}, "region": {"value": "South America"}, "length": {"value": 1287}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "NAMRU-6, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VVYB.1", "url": "https://pathoplexus.org/seq/PP_006VVYB.1"}, "INSDC_accession": {"value": "JF750418.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/JF750418.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["C384G", "T693C"]}}}, {"name": "PP_006VVZ9|FVB554|Bolivia/2008-XX-XX", "node_attrs": {"div": 0.161557, "strain": {"value": "PP_006VVZ9|FVB554|Bolivia/2008-XX-XX"}, "accession": "PP_006VVZ9", "author": {"author": "Cruz, C. D.; Forshey, B. M.; Vallejo, E.; Agudo, R.; Vargas, J.; Blazes, D. L.; Guevara, C.; Laguna-Torres, V. A.; Halsey, E. S.; Kochel, T. J.; Laguna, V. A.; Guevara, C. L.", "value": "Cruz, C. D.; Forshey, B. M.; Vallejo, E.; Agudo, R.; Vargas, J.; Blazes, D. L.; Guevara, C.; Laguna-Torres, V. A.; Halsey, E. S.; Kochel, T. J.; Laguna, V. A.; Guevara, C. L."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2008-XX-XX"}, "abbr_authors": {"value": "Cruz et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2011-09-21"}, "country": {"value": "Bolivia"}, "region": {"value": "South America"}, "length": {"value": 1287}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "NAMRU-6, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VVZ9.1", "url": "https://pathoplexus.org/seq/PP_006VVZ9.1"}, "INSDC_accession": {"value": "JF750419.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/JF750419.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["A447G"]}}}]}]}]}, {"name": "NODE_0000036", "node_attrs": {"div": 0.117691, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A28G", "T72C", "C262T", "C354T", "C360A", "C367T", "T384A", "T408A", "G411A", "T414A", "A426G", "A438G", "T453C", "T465G", "C468A", "A486T", "C489G", "A531T", "T555A", "G558T", "G561A", "G567A", "T570C", "G573T", "A609G", "G618A", "A621C", "A624G", "A631C", "A639G", "A648T", "A657T", "G672C", "C687A", "T690A", "C699A", "G705A", "G714A", "A718G", "A744T", "A745C", "T756G", "A762G", "C774T", "T792A", "C797T", "C799G", "A801C", "T804A", "A810C", "G817T", "G829A", "C830T", "T831G", "G855A", "A858C", "A882T", "G883A", "G885T", "C888T", "C889T", "A915T", "C922T", "C939A", "A960G", "A975T", "A979C", "A987T", "A993T", "A1005T", "T1008A", "G1023T", "T1029A", "G1036T", "A1054C", "A1056T", "A1074T", "G1083A", "A1086G", "G1140A", "A1173G", "G1209A", "C1221T", "T1248C", "G1254A", "T1266A", "G1273T", "T1276C", "T1302C", "T1318C", "A1320T", "T1356A", "-1400A", "-1401T", "A1440T", "G1442A", "T1447G", "C1450A", "A1451G", "-1500A", "T1507C", "A1514G", "T1538G", "A1539G", "T1589G", "T1592G", "-1634G", "-1636T", "A1645G", "-1657T", "-1685T", "-1687G", "-1688G", "T1740G", "-1745G", "-1746C", "G1748T", "T1759A", "A1760T", "A1762G", "T1804A"], "N": ["S226G", "E234D", "D238E", "T252V", "P253A", "A259S", "A263M", "V281I", "A332S"]}, "labels": {"aa": "N: S226G, E234D, D238E, T252V, P253A, A259S, A263M, V281I, A332S"}}, "children": [{"name": "NODE_0000037", "node_attrs": {"div": 0.137722, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A63G", "A120G", "G135A", "C225T", "C244T", "C306T", "G312A", "C454T", "T576C", "A597G", "G633A", "C660T", "C735T", "C759T", "T798C", "C837T", "C879T", "T885C", "T909C", "A933G", "A1017G", "C1032T", "G1110A", "G1158A", "T1224C", "A1257C", "T1269A", "T1281C", "A1329G", "T1436C", "G1437A", "A1450G", "C1462T", "T1480C", "A1551G", "A1607T", "T1707C", "A1777G", "T1787C", "A1792T"], "NSs": ["S35L", "T62I"]}, "labels": {"aa": "NSs: S35L, T62I"}}, "children": [{"name": "PP_006W0D9|Chile-9717869|Chile/1997-XX-XX", "node_attrs": {"div": 0.138498, "strain": {"value": "PP_006W0D9|Chile-9717869|Chile/1997-XX-XX"}, "accession": "PP_006W0D9", "author": {"author": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D.", "value": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "1997-XX-XX"}, "abbr_authors": {"value": "Warner et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2021-02-27"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 1871}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Public Health Agency of Canada, Special Pathogens"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0D9.1", "url": "https://pathoplexus.org/seq/PP_006W0D9.1"}, "INSDC_accession": {"value": "MT956622.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MT956622.1"}, "host": {"value": "mice and others"}}, "branch_attrs": {"mutations": {"nuc": ["T1C", "G179A", "A1871T"], "N": ["S46N"], "NSs": ["V20I"]}, "labels": {"aa": "N: S46N; NSs: V20I"}}}, {"name": "NODE_0000038", "node_attrs": {"div": 0.137724, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VQGF|PP_006VQGF|nan/XXXX-XX-XX", "node_attrs": {"div": 0.137725, "strain": {"value": "PP_006VQGF|PP_006VQGF|nan/XXXX-XX-XX"}, "accession": "PP_006VQGF", "author": {"author": "Hall, T. A.; Sampath, R.; Eshoo, M. W.", "value": "Hall, T. A.; Sampath, R.; Eshoo, M. W."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Hall et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2008-09-26"}, "length": {"value": 1871}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VQGF.1", "url": "https://pathoplexus.org/seq/PP_006VQGF.1"}, "INSDC_accession": {"value": "DL138931.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/DL138931.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000039", "node_attrs": {"div": 0.137725, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0E7|Chile-9717869|nan/XXXX-XX-XX", "node_attrs": {"div": 0.137725, "strain": {"value": "PP_006W0E7|Chile-9717869|nan/XXXX-XX-XX"}, "accession": "PP_006W0E7", "author": {"author": "Bohlman, M. C.; Borucki, M.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; St Jeor, S.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B.", "value": "Bohlman, M. C.; Borucki, M.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; St Jeor, S.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Bohlman et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2000-10-10"}, "length": {"value": 1871}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "National Center for Biotechnology Information, NIH"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0E7.1", "url": "https://pathoplexus.org/seq/PP_006W0E7.1"}, "INSDC_accession": {"value": "NC_003466.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/NC_003466.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000040", "node_attrs": {"div": 0.137725, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W1PM|PP_006W1PM|nan/XXXX-XX-XX", "node_attrs": {"div": 0.137725, "strain": {"value": "PP_006W1PM|PP_006W1PM|nan/XXXX-XX-XX"}, "accession": "PP_006W1PM", "author": {"author": "Gimenez, C. A.; Farias, M. E.; Repizo, G. D.; Curti, L. A.; Goytia, F.; Bonnet, F. A. P.", "value": "Gimenez, C. A.; Farias, M. E.; Repizo, G. D.; Curti, L. A.; Goytia, F.; Bonnet, F. A. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Gimenez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2025-02-28"}, "length": {"value": 1871}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W1PM.1", "url": "https://pathoplexus.org/seq/PP_006W1PM.1"}, "INSDC_accession": {"value": "PG081425.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PG081425.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VNZG|Chile-9717869|nan/XXXX-XX-XX", "node_attrs": {"div": 0.137725, "strain": {"value": "PP_006VNZG|Chile-9717869|nan/XXXX-XX-XX"}, "accession": "PP_006VNZG", "author": {"author": "Bohlman, M. C.; Borucki, M. K.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; Rowe, J. E.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B.", "value": "Bohlman, M. C.; Borucki, M. K.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; Rowe, J. E.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Bohlman et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2000-10-10"}, "length": {"value": 1871}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "University of Nevada-Reno, Microbiology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VNZG.1", "url": "https://pathoplexus.org/seq/PP_006VNZG.1"}, "INSDC_accession": {"value": "AF291702.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF291702.1"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000041", "node_attrs": {"div": 0.145199, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G66A", "A219G", "G315A", "A318G", "T357C", "C417T", "C444A", "G450A", "C459T", "G477A", "G504A", "C600T", "C678T", "A753G", "G756A", "A783G", "T825C", "C897T", "G906A", "A972G", "T1038C", "C1041T", "T1074C", "C1125T", "A1131T", "C1161T", "C1185T", "T1188C", "T1275C", "T1284C", "T1287C", "T1343G", "C1344T", "T1423C", "T1443-", "A1526C", "T1549C", "T1572G", "A1573-", "A1576C", "T1582G", "G1589A", "T1596C", "A1641G", "T1646C", "G1648T", "T1681C", "T1682C", "T1696C", "A1721G", "A1734G", "A1776T", "C1794A", "C1830T"], "NSs": ["Q5R", "E33G"]}, "labels": {"aa": "NSs: Q5R, E33G"}}, "children": [{"name": "NODE_0000042", "node_attrs": {"div": 0.153213, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A483G", "A699G", "G849A", "G891A", "A990G", "A1083G", "A1104G", "G1176A", "A1197T", "T1344G", "T1449C", "A1499G", "T1513C", "G1661T", "C1738T"]}}, "children": [{"name": "NODE_0000043", "node_attrs": {"div": 0.160715, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T117C", "A450G", "A630G", "C801T", "T888C", "G972A", "G1086A", "G1173A", "G1278A", "T1320C", "T1533G", "C1612A"]}}, "children": [{"name": "PP_006VZ6S|NRC-5/18_06/01/2018|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.163328, "strain": {"value": "PP_006VZ6S|NRC-5/18_06/01/2018|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ6S", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1857}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZ6S.1", "url": "https://pathoplexus.org/seq/PP_006VZ6S.1"}, "INSDC_accession": {"value": "MN258227.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258227.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["C72T", "T531C", "C1032T", "G1344A", "C1799A"]}}}, {"name": "NODE_0000044", "node_attrs": {"div": 0.16199, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G699A", "A1029G"]}}, "children": [{"name": "PP_006VLDR|AH-1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.161991, "strain": {"value": "PP_006VLDR|AH-1|nan/XXXX-XX-XX"}, "accession": "PP_006VLDR", "author": {"author": "Lopez, N.; Padula, P.; Rossi, C.; Miguel, S.; Edelstein, A.; Ramirez, E.; Franze-Fernandez, M. T.", "value": "Lopez, N.; Padula, P.; Rossi, C.; Miguel, S.; Edelstein, A.; Ramirez, E.; Franze-Fernandez, M. T."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Lopez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "1997-09-03"}, "length": {"value": 1876}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "CONICET, CEVAN"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VLDR.1", "url": "https://pathoplexus.org/seq/PP_006VLDR.1"}, "INSDC_accession": {"value": "AF004660.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF004660.1"}}, "branch_attrs": {"mutations": {"nuc": ["C1862T", "A1863C"]}}}, {"name": "PP_006VP2A|AH-1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.161991, "strain": {"value": "PP_006VP2A|AH-1|nan/XXXX-XX-XX"}, "accession": "PP_006VP2A", "author": {"author": "Padula, P. J.; Sanchez, A. J.; Edelstein, A.; Nichol, S. T.", "value": "Padula, P. J.; Sanchez, A. J.; Edelstein, A.; Nichol, S. T."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Padula et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2001-03-01"}, "length": {"value": 1876}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Instituto Nacional de Enfermedades Infecciosas, A.N.L.I.S. Dr. Carlos G. Malbran, Departamento de Virologia"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VP2A.1", "url": "https://pathoplexus.org/seq/PP_006VP2A.1"}, "INSDC_accession": {"value": "AF324902.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF324902.1"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000045", "node_attrs": {"div": 0.156117, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T363C", "A543G", "A564G"]}}, "children": [{"name": "PP_006VZ3Y|NRC-2/97_06/01/1996|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.166381, "strain": {"value": "PP_006VZ3Y|NRC-2/97_06/01/1996|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ3Y", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1852}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZ3Y.1", "url": "https://pathoplexus.org/seq/PP_006VZ3Y.1"}, "INSDC_accession": {"value": "MN258224.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258224.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T327C", "G330T", "A492G", "C570T", "G633A", "C672T", "C720A", "C723T", "A855G", "C1032T", "T1041C", "G1158A", "A1257G", "G1347A", "A1432G", "G1435T", "G1464A", "C1513T", "T1548C", "C1549T", "C1576T", "A1590G", "C1737T", "T1743A"]}}}, {"name": "NODE_0000046", "node_attrs": {"div": 0.156923, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T657C"]}}, "children": [{"name": "NODE_0000047", "node_attrs": {"div": 0.165439, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G378A", "A450G", "C495T", "T537C", "T798C", "C813T", "C825T", "C858T", "G1083A", "T1221C", "C1287T", "C1378A", "C1479A", "C1526T", "A1607G", "G1659A", "T1660C", "C1756T"]}}, "children": [{"name": "PP_006VXAL|ANDV LS-CH-2016 ex Chile|Switzerland/2016-12-26", "node_attrs": {"div": 0.170115, "strain": {"value": "PP_006VXAL|ANDV LS-CH-2016 ex Chile|Switzerland/2016-12-26"}, "accession": "PP_006VXAL", "author": {"author": "Beuret, C. M.; Siegrist, D.", "value": "Beuret, C. M.; Siegrist, D."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2016-12-26"}, "abbr_authors": {"value": "Beuret et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2018-01-29"}, "country": {"value": "Switzerland"}, "region": {"value": "Europe"}, "length": {"value": 1874}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Spiez Laboratory, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VXAL.1", "url": "https://pathoplexus.org/seq/PP_006VXAL.1"}, "INSDC_accession": {"value": "KY659432.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/KY659432.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T117C", "C134G", "A140T", "T584C", "G585A", "T781C", "T1798A"], "N": ["A31G", "E33V", "M181T"], "NSs": ["R5G", "R7W"]}, "labels": {"aa": "N: A31G, E33V, M181T; NSs: R5G, R7W"}}}, {"name": "NODE_0000048", "node_attrs": {"div": 0.165441, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0X6|ANDV-CH-LS-2016|Switzerland/2016-XX-XX", "node_attrs": {"div": 0.165442, "strain": {"value": "PP_006W0X6|ANDV-CH-LS-2016|Switzerland/2016-XX-XX"}, "accession": "PP_006W0X6", "author": {"author": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N.", "value": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2016-XX-XX"}, "abbr_authors": {"value": "Zuest et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-10-02"}, "country": {"value": "Switzerland"}, "region": {"value": "Europe"}, "length": {"value": 1793}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Spiez Laboratory, Biology Department"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0X6.1", "url": "https://pathoplexus.org/seq/PP_006W0X6.1"}, "INSDC_accession": {"value": "OR405525.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR405525.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0W8|ANDV-CH-LS-2022|Switzerland/2022-XX-XX", "node_attrs": {"div": 0.165442, "strain": {"value": "PP_006W0W8|ANDV-CH-LS-2022|Switzerland/2022-XX-XX"}, "accession": "PP_006W0W8", "author": {"author": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N.", "value": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2022-XX-XX"}, "abbr_authors": {"value": "Zuest et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-10-02"}, "country": {"value": "Switzerland"}, "region": {"value": "Europe"}, "length": {"value": 1760}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Spiez Laboratory, Biology Department"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0W8.1", "url": "https://pathoplexus.org/seq/PP_006W0W8.1"}, "INSDC_accession": {"value": "OR405520.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR405520.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["G1493T", "T1496-", "T1497-", "A1498-", "G1499-", "A1500-", "G1501-", "G1502-", "G1503-", "C1504-", "C1505-", "A1506-", "C1507-", "T1508-", "A1509-", "C1510-", "A1511-", "T1512-", "C1513-", "G1514-", "T1515-", "A1516-", "T1517-", "T1518-", "T1519-", "G1520-", "C1521-", "A1522-", "C1523-", "T1524-", "A1525-", "T1526-", "G1527-", "G1528-"]}}}]}]}, {"name": "NODE_0000049", "node_attrs": {"div": 0.158477, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C660T", "T781C"]}}, "children": [{"name": "NODE_0000050", "node_attrs": {"div": 0.168778, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G179A", "G231A", "C328T", "A615G", "C621T", "T711C", "A729G", "C837T", "C843T", "T882C", "G912A", "T1056C", "C1122T", "T1552C", "G1605T", "T1643C"], "N": ["S46N"], "NSs": ["V20I", "G37D"]}, "labels": {"aa": "N: S46N; NSs: V20I, G37D"}}, "children": [{"name": "PP_006VQHC|CHI-7913|Chile/XXXX-XX-XX", "node_attrs": {"div": 0.169553, "strain": {"value": "PP_006VQHC|CHI-7913|Chile/XXXX-XX-XX"}, "accession": "PP_006VQHC", "author": {"author": "Tischler, N. D.; Fernandez, J.; Muller, I.; Martinez, R.; Galeno, H.; Villagra, E.; Mora, J.; Ramirez, E.; Rosemblatt, M.; Valenzuela, P. D.; Mueller, I.; Valenzuela, P. D. T.", "value": "Tischler, N. D.; Fernandez, J.; Muller, I.; Martinez, R.; Galeno, H.; Villagra, E.; Mora, J.; Ramirez, E.; Rosemblatt, M.; Valenzuela, P. D.; Mueller, I.; Valenzuela, P. D. T."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tischler et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2003-05-01"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 1802}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Fundacion Ciencia para la Vida, Departamento de Desarrollo e Investigacion"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VQHC.1", "url": "https://pathoplexus.org/seq/PP_006VQHC.1"}, "INSDC_accession": {"value": "AY228237.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AY228237.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["G33T", "A484G", "T1776C"], "N": ["T148A"]}, "labels": {"aa": "N: T148A"}}}, {"name": "NODE_0000051", "node_attrs": {"div": 0.16878, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000052", "node_attrs": {"div": 0.168782, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2HY|CHI-7913|Chile/1999-XX-XX", "node_attrs": {"div": 0.168784, "strain": {"value": "PP_006W2HY|CHI-7913|Chile/1999-XX-XX"}, "accession": "PP_006W2HY", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "1999-XX-XX"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2025-11-04"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 1872}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W2HY.1", "url": "https://pathoplexus.org/seq/PP_006W2HY.1"}, "INSDC_accession": {"value": "PV808470.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808470.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["G1487T"]}}}, {"name": "PP_006W0CB|CHI-7913|Chile/1999-XX-XX", "node_attrs": {"div": 0.168784, "strain": {"value": "PP_006W0CB|CHI-7913|Chile/1999-XX-XX"}, "accession": "PP_006W0CB", "author": {"author": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D.", "value": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "1999-XX-XX"}, "abbr_authors": {"value": "Warner et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2021-02-27"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 1802}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Public Health Agency of Canada, Special Pathogens"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0CB.1", "url": "https://pathoplexus.org/seq/PP_006W0CB.1"}, "INSDC_accession": {"value": "MT956618.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MT956618.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000053", "node_attrs": {"div": 0.172671, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A63G", "A66G", "A1329G", "G1330T", "T1331A"]}}, "children": [{"name": "PP_006VR28|PP_006VR28|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172672, "strain": {"value": "PP_006VR28|PP_006VR28|nan/XXXX-XX-XX"}, "accession": "PP_006VR28", "author": {"author": "Pichuantesu, S.; Nguyen, S. H.", "value": "Pichuantesu, S.; Nguyen, S. H."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Pichuantesu et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2008-09-26"}, "length": {"value": 1290}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VR28.1", "url": "https://pathoplexus.org/seq/PP_006VR28.1"}, "INSDC_accession": {"value": "DL139703.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/DL139703.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000054", "node_attrs": {"div": 0.172672, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VVWF|PP_006VVWF|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172672, "strain": {"value": "PP_006VVWF|PP_006VVWF|nan/XXXX-XX-XX"}, "accession": "PP_006VVWF", "author": {"author": "Nguyen, S. H.; Pichuantes, S.", "value": "Nguyen, S. H.; Pichuantes, S."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Nguyen et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2013-02-13"}, "length": {"value": 1290}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VVWF.1", "url": "https://pathoplexus.org/seq/PP_006VVWF.1"}, "INSDC_accession": {"value": "HV984420.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/HV984420.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VR0C|PP_006VR0C|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172672, "strain": {"value": "PP_006VR0C|PP_006VR0C|nan/XXXX-XX-XX"}, "accession": "PP_006VR0C", "author": {"author": "Nguyen, S. H.; Pichuantes, S.", "value": "Nguyen, S. H.; Pichuantes, S."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Nguyen et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2008-02-21"}, "length": {"value": 1290}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VR0C.1", "url": "https://pathoplexus.org/seq/PP_006VR0C.1"}, "INSDC_accession": {"value": "DI163829.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/DI163829.1"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000055", "node_attrs": {"div": 0.16453, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T202C", "C363T", "G378A", "G465A", "A477G", "A561G", "T1116C", "C1119T", "A1336G", "T1436C", "G1451A", "C1576T", "G1659A"]}}, "children": [{"name": "NODE_0000056", "node_attrs": {"div": 0.167809, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C357T", "T549C", "G624A", "A1176G", "A1586G"]}}, "children": [{"name": "NODE_0000057", "node_attrs": {"div": 0.171445, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T354G", "T882C", "C1050T", "C1188T", "A1468G", "C1767T"]}}, "children": [{"name": "PP_006VZ5U|NRC-4/18_06/01/2018|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.171446, "strain": {"value": "PP_006VZ5U|NRC-4/18_06/01/2018|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ5U", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1860}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZ5U.1", "url": "https://pathoplexus.org/seq/PP_006VZ5U.1"}, "INSDC_accession": {"value": "MN258226.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258226.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZ4W|NRC-3/18_06/01/1997|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.171446, "strain": {"value": "PP_006VZ4W|NRC-3/18_06/01/1997|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ4W", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1857}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZ4W.1", "url": "https://pathoplexus.org/seq/PP_006VZ4W.1"}, "INSDC_accession": {"value": "MN258225.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258225.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000058", "node_attrs": {"div": 0.177483, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {"nuc": ["T1C", "A2T", "T4C", "T7A", "A8T", "G9A", "A10T", "G312A", "C328T", "A378G", "A627G", "A630G", "T660C", "T927C", "A930G", "A996G", "T1059C", "G1143A", "G1293T", "G1296A", "A1451G", "G1622A", "A1710C"]}, "labels": {"outbreak": "2026-Hondius"}}, "children": [{"name": "PP_006W3U9|PP_006W3U9|Netherlands/2026-05-06", "node_attrs": {"div": 0.177486, "strain": {"value": "PP_006W3U9|PP_006W3U9|Netherlands/2026-05-06"}, "accession": "PP_006W3U9", "author": {"author": "Oude Munnink, B. B.; Nieuwenhuijsse, D.; van der Boom, S.; Zaeck, L.; Boter, M.; Cassidy, H.; Schuele, L.; Molenkamp, R.; van der Eijk, A.; GeurtsvanKessel, C.; Koopmans, M.", "value": "Oude Munnink, B. B.; Nieuwenhuijsse, D.; van der Boom, S.; Zaeck, L.; Boter, M.; Cassidy, H.; Schuele, L.; Molenkamp, R.; van der Eijk, A.; GeurtsvanKessel, C.; Koopmans, M."}, "restrictedUntil": {"value": "2027-05-10"}, "date": {"value": "2026-05-06"}, "abbr_authors": {"value": "Oude Munnink et al."}, "outbreak": {"value": "2026-Hondius"}, "date_released": {"value": "2026-05-10"}, "country": {"value": "Netherlands"}, "region": {"value": "Europe"}, "length": {"value": 1807}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "institution": {"value": "ErasmusMC"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W3U9.1", "url": "https://pathoplexus.org/seq/PP_006W3U9.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000059", "node_attrs": {"div": 0.177486, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000060", "node_attrs": {"div": 0.177488, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {"nuc": ["G28A", "C1850T", "T1851G", "T1852A"]}}, "children": [{"name": "PP_006WDJK|PP_006WDJK|South Africa/2026-05-02", "node_attrs": {"div": 0.17749, "strain": {"value": "PP_006WDJK|PP_006WDJK|South Africa/2026-05-02"}, "accession": "PP_006WDJK", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "restrictedUntil": {"value": "2027-05-12"}, "date": {"value": "2026-05-02"}, "abbr_authors": {"value": "Weyer et al."}, "outbreak": {"value": "2026-Hondius"}, "date_released": {"value": "2026-05-12"}, "country": {"value": "South Africa"}, "region": {"value": "Africa"}, "length": {"value": 1860}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "institution": {"value": "National Institute of Communicable Diseases"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006WDJK.1", "url": "https://pathoplexus.org/seq/PP_006WDJK.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006WANE|PP_006WANE|South Africa/2026-05-02", "node_attrs": {"div": 0.17749, "strain": {"value": "PP_006WANE|PP_006WANE|South Africa/2026-05-02"}, "accession": "PP_006WANE", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "restrictedUntil": {"value": "2027-05-11"}, "date": {"value": "2026-05-02"}, "abbr_authors": {"value": "Weyer et al."}, "outbreak": {"value": "2026-Hondius"}, "date_released": {"value": "2026-05-11"}, "country": {"value": "South Africa"}, "region": {"value": "Africa"}, "length": {"value": 1860}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "institution": {"value": "National Institute of Communicable Diseases"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006WANE.2", "url": "https://pathoplexus.org/seq/PP_006WANE.2"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000061", "node_attrs": {"div": 0.177489, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006WBLH|ANDV/Switzerland/Hu-3337/2026|Switzerland/2026-05-04", "node_attrs": {"div": 0.177491, "strain": {"value": "PP_006WBLH|ANDV/Switzerland/Hu-3337/2026|Switzerland/2026-05-04"}, "accession": "PP_006WBLH", "author": {"author": "Bloemberg, G.; Chudzinski, V.; Cordey, S.; Huber, M.; Laubscher, F.; Perez-Rodriguez, F.-J.; Pichler, I.; Schibler, M.; Thomasson, V.; Ziltener, G.", "value": "Bloemberg, G.; Chudzinski, V.; Cordey, S.; Huber, M.; Laubscher, F.; Perez-Rodriguez, F.-J.; Pichler, I.; Schibler, M.; Thomasson, V.; Ziltener, G."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2026-05-04"}, "abbr_authors": {"value": "Bloemberg et al."}, "outbreak": {"value": "2026-Hondius"}, "date_released": {"value": "2026-05-11"}, "country": {"value": "Switzerland"}, "region": {"value": "Europe"}, "length": {"value": 1853}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "University Hospitals of Geneva, Laboratory of Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006WBLH.1", "url": "https://pathoplexus.org/seq/PP_006WBLH.1"}, "INSDC_accession": {"value": "PZ385163.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PZ385163.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000062", "node_attrs": {"div": 0.177491, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {"nuc": ["G22T"]}}, "children": [{"name": "PP_006WDKH|PP_006WDKH|South Africa/2026-04-26", "node_attrs": {"div": 0.177491, "strain": {"value": "PP_006WDKH|PP_006WDKH|South Africa/2026-04-26"}, "accession": "PP_006WDKH", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "restrictedUntil": {"value": "2027-05-12"}, "date": {"value": "2026-04-26"}, "abbr_authors": {"value": "Weyer et al."}, "outbreak": {"value": "2026-Hondius"}, "date_released": {"value": "2026-05-12"}, "country": {"value": "South Africa"}, "region": {"value": "Africa"}, "length": {"value": 1811}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "institution": {"value": "National Institute of Communicable Diseases"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006WDKH.1", "url": "https://pathoplexus.org/seq/PP_006WDKH.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T1823A", "A1824T"]}}}, {"name": "PP_006W6RC|PP_006W6RC|Netherlands/2026-05-03", "node_attrs": {"div": 0.177491, "strain": {"value": "PP_006W6RC|PP_006W6RC|Netherlands/2026-05-03"}, "accession": "PP_006W6RC", "author": {"author": "Diagne, Moussa Moise; Sankhe, Safietou; Ndiaye, Ndeye Awa; Kane, Mouhamed; Diop, Seynabou M. B. S.; Seye, Seynabou; Fall, Gamou", "value": "Diagne, Moussa Moise; Sankhe, Safietou; Ndiaye, Ndeye Awa; Kane, Mouhamed; Diop, Seynabou M. B. S.; Seye, Seynabou; Fall, Gamou"}, "restrictedUntil": {"value": "2027-05-11"}, "date": {"value": "2026-05-03"}, "abbr_authors": {"value": "Diagne et al."}, "outbreak": {"value": "2026-Hondius"}, "date_released": {"value": "2026-05-11"}, "country": {"value": "Netherlands"}, "region": {"value": "Europe"}, "length": {"value": 1829}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "institution": {"value": "Institut Pasteur de Dakar"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W6RC.2", "url": "https://pathoplexus.org/seq/PP_006W6RC.2"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}, {"name": "NODE_0000063", "node_attrs": {"div": 0.17081, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T367C", "C453T", "G564A", "G828A", "A930G", "G972A", "G990A", "G1083A", "C1333T", "C1526T", "T1830C"]}}, "children": [{"name": "NODE_0000064", "node_attrs": {"div": 0.173755, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C225T", "T354C", "C858T", "C1116T", "G1344A", "A1500C", "G1666A"], "NSs": ["S35L"]}, "labels": {"aa": "NSs: S35L"}}, "children": [{"name": "PP_006W2KU|CHI-Hu13724_P2|Chile/2024-07-30", "node_attrs": {"div": 0.174531, "strain": {"value": "PP_006W2KU|CHI-Hu13724_P2|Chile/2024-07-30"}, "accession": "PP_006W2KU", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2024-07-30"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2025-11-04"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 1861}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W2KU.1", "url": "https://pathoplexus.org/seq/PP_006W2KU.1"}, "INSDC_accession": {"value": "PV808476.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808476.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["G179A"], "N": ["S46N"], "NSs": ["V20I"]}, "labels": {"aa": "N: S46N; NSs: V20I"}}}, {"name": "NODE_0000065", "node_attrs": {"div": 0.173757, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2JW|CHI-Hu13724_P1|Chile/2024-07-24", "node_attrs": {"div": 0.173758, "strain": {"value": "PP_006W2JW|CHI-Hu13724_P1|Chile/2024-07-24"}, "accession": "PP_006W2JW", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2024-07-24"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2025-11-04"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 1869}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W2JW.1", "url": "https://pathoplexus.org/seq/PP_006W2JW.1"}, "INSDC_accession": {"value": "PV808473.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808473.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000066", "node_attrs": {"div": 0.173758, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2G1|137|Chile/2024-06-27", "node_attrs": {"div": 0.173758, "strain": {"value": "PP_006W2G1|137|Chile/2024-06-27"}, "accession": "PP_006W2G1", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2024-06-27"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2025-11-04"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "division": {"value": "Los Rios CL"}, "length": {"value": 1865}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W2G1.1", "url": "https://pathoplexus.org/seq/PP_006W2G1.1"}, "INSDC_accession": {"value": "PV808467.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808467.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W2F3|136|Chile/2024-06-27", "node_attrs": {"div": 0.173758, "strain": {"value": "PP_006W2F3|136|Chile/2024-06-27"}, "accession": "PP_006W2F3", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2024-06-27"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2025-11-04"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "division": {"value": "Los Rios CL"}, "length": {"value": 1870}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W2F3.1", "url": "https://pathoplexus.org/seq/PP_006W2F3.1"}, "INSDC_accession": {"value": "PV796316.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV796316.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000067", "node_attrs": {"div": 0.172534, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T417C", "G870A", "T1744C", "A1792G"]}}, "children": [{"name": "PP_006W0SG|Andes/ARG_p19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.17331, "strain": {"value": "PP_006W0SG|Andes/ARG_p19|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0SG", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-10-10"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1873}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0SG.1", "url": "https://pathoplexus.org/seq/PP_006W0SG.1"}, "INSDC_accession": {"value": "OP555722.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555722.1"}}, "branch_attrs": {"mutations": {"nuc": ["G103A", "G1487T"], "N": ["A21T"]}, "labels": {"aa": "N: A21T"}}}, {"name": "NODE_0000068", "node_attrs": {"div": 0.173309, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A57G"]}}, "children": [{"name": "NODE_0000069", "node_attrs": {"div": 0.174084, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G179A"], "N": ["S46N"], "NSs": ["V20I"]}, "labels": {"aa": "N: S46N; NSs: V20I"}}, "children": [{"name": "PP_006W0TE|Andes/ARG-M.a.|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.174085, "strain": {"value": "PP_006W0TE|Andes/ARG-M.a.|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0TE", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-10-10"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1868}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0TE.1", "url": "https://pathoplexus.org/seq/PP_006W0TE.1"}, "INSDC_accession": {"value": "OP555728.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555728.1"}, "host": {"value": "Syrian golden hamster; Syrian golden hamsters; Syrian hamster; golden hamster"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0RJ|Andes/ARG_p9|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.174085, "strain": {"value": "PP_006W0RJ|Andes/ARG_p9|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0RJ", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-10-10"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1872}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0RJ.1", "url": "https://pathoplexus.org/seq/PP_006W0RJ.1"}, "INSDC_accession": {"value": "OP555721.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555721.1"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000070", "node_attrs": {"div": 0.173312, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0NQ|Arg-O.l.444|nan/XXXX-XX-XX", "node_attrs": {"div": 0.173313, "strain": {"value": "PP_006W0NQ|Arg-O.l.444|nan/XXXX-XX-XX"}, "accession": "PP_006W0NQ", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-10-10"}, "length": {"value": 1845}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0NQ.1", "url": "https://pathoplexus.org/seq/PP_006W0NQ.1"}, "INSDC_accession": {"value": "OP555719.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555719.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000071", "node_attrs": {"div": 0.173313, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0MS|PP_006W0MS|nan/XXXX-XX-XX", "node_attrs": {"div": 0.173313, "strain": {"value": "PP_006W0MS|PP_006W0MS|nan/XXXX-XX-XX"}, "accession": "PP_006W0MS", "author": {"author": "Alonso, D.", "value": "Alonso, D."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-09-21"}, "length": {"value": 1845}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0MS.1", "url": "https://pathoplexus.org/seq/PP_006W0MS.1"}, "INSDC_accession": {"value": "OP493851.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP493851.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000072", "node_attrs": {"div": 0.173313, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0QL|Andes/ARG_p3|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.173313, "strain": {"value": "PP_006W0QL|Andes/ARG_p3|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0QL", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-10-10"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1861}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0QL.1", "url": "https://pathoplexus.org/seq/PP_006W0QL.1"}, "INSDC_accession": {"value": "OP555720.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555720.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0PN|Andes/ARG-O.l.444|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.173313, "strain": {"value": "PP_006W0PN|Andes/ARG-O.l.444|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0PN", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-10-10"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1845}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0PN.1", "url": "https://pathoplexus.org/seq/PP_006W0PN.1"}, "INSDC_accession": {"value": "OP555723.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555723.1"}, "host": {"value": "mice and others"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000073", "node_attrs": {"div": 0.149102, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A261G", "C498T", "T684C", "T693C", "A708G", "G1645A", "A1672G"], "NSs": ["N47S"]}, "labels": {"aa": "NSs: N47S"}}, "children": [{"name": "PP_006W0AF|ARCH14/NRC1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.176462, "strain": {"value": "PP_006W0AF|ARCH14/NRC1|nan/XXXX-XX-XX"}, "accession": "PP_006W0AF", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-03-31"}, "length": {"value": 1860}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0AF.1", "url": "https://pathoplexus.org/seq/PP_006W0AF.1"}, "INSDC_accession": {"value": "MN850086.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850086.1"}}, "branch_attrs": {"mutations": {"nuc": ["C72T", "T354C", "A372G", "G378A", "A401G", "T417C", "G426A", "G438A", "C471T", "T525C", "A540G", "A543G", "A594G", "T678C", "A705G", "C723T", "G771A", "G783A", "T918C", "C945A", "T975C", "C978T", "G1047A", "G1101A", "G1110A", "C1135T", "T1152C", "C1188T", "A1200T", "T1221C", "C1255T", "G1296A", "C1302T", "T1320C", "T1349C", "C1360T", "T1405C", "G1447T", "T1485C", "G1558A", "G1572T", "-1573G", "G1634A", "G1641A", "A1642G", "A1652C", "G1721A"], "N": ["K120R"]}, "labels": {"aa": "N: K120R"}}}, {"name": "NODE_0000074", "node_attrs": {"div": 0.163811, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C172T", "A240G", "T366C", "T474C", "A477G", "A588G", "A597G", "G633T", "T657C", "A729G", "A930G", "C1074T", "A1137G", "G1173A", "T1185C", "A1197C", "T1269A", "T1320A", "G1330A", "G1332A", "A1356G", "C1397T", "T1436C", "T1452A", "A1586T", "A1607G"], "NSs": ["Q40R"]}, "labels": {"aa": "NSs: Q40R"}}, "children": [{"name": "NODE_0000075", "node_attrs": {"div": 0.168504, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T459C", "G516A", "C546T", "G912A", "T918C", "G1326A", "A1336G", "G1395A", "A1499G", "A1530G", "G1672A"]}}, "children": [{"name": "PP_006W07M|AREB14/P1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.168505, "strain": {"value": "PP_006W07M|AREB14/P1|nan/XXXX-XX-XX"}, "accession": "PP_006W07M", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-03-31"}, "length": {"value": 1850}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W07M.1", "url": "https://pathoplexus.org/seq/PP_006W07M.1"}, "INSDC_accession": {"value": "MN850083.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850083.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000076", "node_attrs": {"div": 0.168505, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W09H|AREB14/P3|nan/XXXX-XX-XX", "node_attrs": {"div": 0.168505, "strain": {"value": "PP_006W09H|AREB14/P3|nan/XXXX-XX-XX"}, "accession": "PP_006W09H", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-03-31"}, "length": {"value": 1819}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W09H.1", "url": "https://pathoplexus.org/seq/PP_006W09H.1"}, "INSDC_accession": {"value": "MN850085.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850085.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W08K|AREB14/P2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.168505, "strain": {"value": "PP_006W08K|AREB14/P2|nan/XXXX-XX-XX"}, "accession": "PP_006W08K", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-03-31"}, "length": {"value": 1876}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W08K.1", "url": "https://pathoplexus.org/seq/PP_006W08K.1"}, "INSDC_accession": {"value": "MN850084.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850084.1"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000077", "node_attrs": {"div": 0.164566, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C507T", "T1449C"]}}, "children": [{"name": "NODE_0000078", "node_attrs": {"div": 0.164569, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ7Q|NRC-6/18_05/21/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.167676, "strain": {"value": "PP_006VZ7Q|NRC-6/18_05/21/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ7Q", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1867}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZ7Q.1", "url": "https://pathoplexus.org/seq/PP_006VZ7Q.1"}, "INSDC_accession": {"value": "MN258228.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258228.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["G330A", "T651C", "A846G", "C1255T", "C1436T", "G1558T", "C1800T"]}}}, {"name": "NODE_0000079", "node_attrs": {"div": 0.166903, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G318A", "G624A", "A1077G"]}}, "children": [{"name": "PP_006W0BD|ARLA17/NRC2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172368, "strain": {"value": "PP_006W0BD|ARLA17/NRC2|nan/XXXX-XX-XX"}, "accession": "PP_006W0BD", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-03-31"}, "length": {"value": 1844}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0BD.1", "url": "https://pathoplexus.org/seq/PP_006W0BD.1"}, "INSDC_accession": {"value": "MN850087.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850087.1"}}, "branch_attrs": {"mutations": {"nuc": ["C244T", "T336C", "T396C", "T636C", "A846G", "G930A", "A1330C", "A1340G", "A1530G", "G1661-", "T1662-", "T1663-"]}}}, {"name": "PP_006VZ20|Epilink/96_2/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.170019, "strain": {"value": "PP_006VZ20|Epilink/96_2/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ20", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1867}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZ20.1", "url": "https://pathoplexus.org/seq/PP_006VZ20.1"}, "INSDC_accession": {"value": "MN258223.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258223.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T172C", "C420T", "A990G", "C1065T", "G1734A", "C1756T"]}}}]}]}, {"name": "NODE_0000080", "node_attrs": {"div": 0.169233, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T61C", "T363C", "T1005C", "G1143A", "C1197T", "T1281C", "T1350G", "A1793C"]}}, "children": [{"name": "PP_006VZY7|Epuyen/18-19_Patient_7_12/7/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.170008, "strain": {"value": "PP_006VZY7|Epuyen/18-19_Patient_7_12/7/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZY7", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1856}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZY7.1", "url": "https://pathoplexus.org/seq/PP_006VZY7.1"}, "INSDC_accession": {"value": "MN258254.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258254.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T782C"], "N": ["L247S"]}, "labels": {"aa": "N: L247S"}}}, {"name": "NODE_0000081", "node_attrs": {"div": 0.169234, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZF8|Epuyen/18-19_Patient_17_12/31/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169236, "strain": {"value": "PP_006VZF8|Epuyen/18-19_Patient_17_12/31/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZF8", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1861}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZF8.1", "url": "https://pathoplexus.org/seq/PP_006VZF8.1"}, "INSDC_accession": {"value": "MN258236.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258236.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000082", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZQP|Epuyen/18-19_Patient_26_1/4/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZQP|Epuyen/18-19_Patient_26_1/4/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZQP", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1858}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZQP.1", "url": "https://pathoplexus.org/seq/PP_006VZQP.1"}, "INSDC_accession": {"value": "MN258245.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258245.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000083", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ8N|Epuyen/18-19_Patient_10_12/10/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZ8N|Epuyen/18-19_Patient_10_12/10/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ8N", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1843}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZ8N.1", "url": "https://pathoplexus.org/seq/PP_006VZ8N.1"}, "INSDC_accession": {"value": "MN258229.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258229.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000084", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2C9|Epuyen|Argentina/2022-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006W2C9|Epuyen|Argentina/2022-XX-XX"}, "accession": "PP_006W2C9", "author": {"author": "Coelho, R.; Kehl, S.; Periolo, N.; Alonso, D.; Bellomo, C.; Martinez, V.", "value": "Coelho, R.; Kehl, S.; Periolo, N.; Alonso, D.; Bellomo, C.; Martinez, V."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2022-XX-XX"}, "abbr_authors": {"value": "Coelho et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-25"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1848}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "INEI ANLIS, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W2C9.1", "url": "https://pathoplexus.org/seq/PP_006W2C9.1"}, "INSDC_accession": {"value": "PQ215668.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PQ215668.1"}}, "branch_attrs": {"mutations": {"nuc": ["G1520A", "C1869T"]}}}, {"name": "NODE_0000085", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W01Z|Epuyen/18-19_Patient_2_11/23/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006W01Z|Epuyen/18-19_Patient_2_11/23/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006W01Z", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1804}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W01Z.1", "url": "https://pathoplexus.org/seq/PP_006W01Z.1"}, "INSDC_accession": {"value": "MN258249.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258249.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000086", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZZ5", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1858}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZZ5.1", "url": "https://pathoplexus.org/seq/PP_006VZZ5.1"}, "INSDC_accession": {"value": "MN258255.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258255.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000087", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZPR|Epuyen/18-19_Patient_25_1/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZPR|Epuyen/18-19_Patient_25_1/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZPR", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1861}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZPR.1", "url": "https://pathoplexus.org/seq/PP_006VZPR.1"}, "INSDC_accession": {"value": "MN258244.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258244.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000088", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZKZ|Epuyen/18-19_Patient_20_1/1/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZKZ|Epuyen/18-19_Patient_20_1/1/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZKZ", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1862}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZKZ.1", "url": "https://pathoplexus.org/seq/PP_006VZKZ.1"}, "INSDC_accession": {"value": "MN258240.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258240.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000089", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZRM|Epuyen/18-19_Patient_27_1/8/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZRM|Epuyen/18-19_Patient_27_1/8/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZRM", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1848}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZRM.1", "url": "https://pathoplexus.org/seq/PP_006VZRM.1"}, "INSDC_accession": {"value": "MN258246.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258246.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000090", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZSK", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1849}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZSK.1", "url": "https://pathoplexus.org/seq/PP_006VZSK.1"}, "INSDC_accession": {"value": "MN258247.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258247.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000091", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZUF|Epuyen/18-19_Patient_3_11/20/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZUF|Epuyen/18-19_Patient_3_11/20/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZUF", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1851}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZUF.1", "url": "https://pathoplexus.org/seq/PP_006VZUF.1"}, "INSDC_accession": {"value": "MN258250.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258250.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000092", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZJ1|Epuyen/18-19_Patient_1_11/3/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZJ1|Epuyen/18-19_Patient_1_11/3/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZJ1", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1851}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZJ1.1", "url": "https://pathoplexus.org/seq/PP_006VZJ1.1"}, "INSDC_accession": {"value": "MN258239.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258239.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000093", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZTH|Epuyen/18-19_Patient_29_1/14/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZTH|Epuyen/18-19_Patient_29_1/14/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZTH", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1861}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZTH.1", "url": "https://pathoplexus.org/seq/PP_006VZTH.1"}, "INSDC_accession": {"value": "MN258248.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258248.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000094", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZX9|Epuyen/18-19_Patient_6_11/25/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZX9|Epuyen/18-19_Patient_6_11/25/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZX9", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1866}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZX9.1", "url": "https://pathoplexus.org/seq/PP_006VZX9.1"}, "INSDC_accession": {"value": "MN258253.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258253.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000095", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZBG|Epuyen/18-19_Patient_13_12/24/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZBG|Epuyen/18-19_Patient_13_12/24/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZBG", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1851}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZBG.1", "url": "https://pathoplexus.org/seq/PP_006VZBG.1"}, "INSDC_accession": {"value": "MN258232.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258232.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000096", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZLX|Epuyen/18-19_Patient_22_1/1/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZLX|Epuyen/18-19_Patient_22_1/1/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZLX", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1863}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZLX.1", "url": "https://pathoplexus.org/seq/PP_006VZLX.1"}, "INSDC_accession": {"value": "MN258241.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258241.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T1428C"]}}}, {"name": "NODE_0000097", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZEA", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1859}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZEA.1", "url": "https://pathoplexus.org/seq/PP_006VZEA.1"}, "INSDC_accession": {"value": "MN258235.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258235.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000098", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZMV|Epuyen/18-19_Patient_23_1/7/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZMV|Epuyen/18-19_Patient_23_1/7/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZMV", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1850}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZMV.1", "url": "https://pathoplexus.org/seq/PP_006VZMV.1"}, "INSDC_accession": {"value": "MN258242.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258242.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T1391C", "T1650C"]}}}, {"name": "NODE_0000099", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZNT", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1849}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZNT.1", "url": "https://pathoplexus.org/seq/PP_006VZNT.1"}, "INSDC_accession": {"value": "MN258243.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258243.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000100", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZVD|Epuyen/18-19_Patient_4_11/27/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZVD|Epuyen/18-19_Patient_4_11/27/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZVD", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1856}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZVD.1", "url": "https://pathoplexus.org/seq/PP_006VZVD.1"}, "INSDC_accession": {"value": "MN258251.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258251.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000101", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZAJ", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1853}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZAJ.1", "url": "https://pathoplexus.org/seq/PP_006VZAJ.1"}, "INSDC_accession": {"value": "MN258231.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258231.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000102", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W001|Epuyen/18-19_Patient_9_12/12/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006W001|Epuyen/18-19_Patient_9_12/12/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006W001", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1868}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W001.1", "url": "https://pathoplexus.org/seq/PP_006W001.1"}, "INSDC_accession": {"value": "MN258256.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258256.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000103", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZH3|Epuyen/18-19_Patient_19_1/2/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZH3|Epuyen/18-19_Patient_19_1/2/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZH3", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1865}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZH3.1", "url": "https://pathoplexus.org/seq/PP_006VZH3.1"}, "INSDC_accession": {"value": "MN258238.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258238.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000104", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZWB", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1849}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZWB.1", "url": "https://pathoplexus.org/seq/PP_006VZWB.1"}, "INSDC_accession": {"value": "MN258252.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258252.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000105", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZCE|Epuyen/18-19_Patient_14_12/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZCE|Epuyen/18-19_Patient_14_12/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZCE", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1855}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZCE.1", "url": "https://pathoplexus.org/seq/PP_006VZCE.1"}, "INSDC_accession": {"value": "MN258233.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258233.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000106", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZDC|Epuyen/18-19_Patient_15_12/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZDC|Epuyen/18-19_Patient_15_12/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZDC", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1828}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZDC.1", "url": "https://pathoplexus.org/seq/PP_006VZDC.1"}, "INSDC_accession": {"value": "MN258234.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258234.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000107", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZG6|Epuyen/18-19_Patient_18_12/31/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZG6|Epuyen/18-19_Patient_18_12/31/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZG6", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1827}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZG6.1", "url": "https://pathoplexus.org/seq/PP_006VZG6.1"}, "INSDC_accession": {"value": "MN258237.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258237.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ9L", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1844}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZ9L.1", "url": "https://pathoplexus.org/seq/PP_006VZ9L.1"}, "INSDC_accession": {"value": "MN258230.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258230.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, "root_sequence": {"N": "MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQSRRAAVSTLETKLGELKRQLADLVAAQKLATKPVDPTGLEPDDHLKEKSSLRYGNVLDVNSIDLEEPSGQTADWKAIGAYILGFAIPIILKALYMLSTRGRQTVKDNKGTRIRFKDDSSFEEVNGIRKPKHLYVSMPTAQSTMKAEEITPGRFRTIACGLFPAQVKARNIISPVMGVIGFGFFVKDWMDRIEEFLAAECPFLPKPKVASEAFMSTNKMYFLNRQRQVNESKVQDIIDLIDHAETESATLFTEIATPHSVWVFACAPDRCPPTALYVAGVPELGAFFSILQDMRNTIMASKSVGTAEEKLKKKSAFYQSYLRRTQSMGIQLDQKIIILYMLSWGKEAVNHFHLGDDMDPELRQLAQSLIDTKVKEISNQEPLKL*", "NSs": "MPRRQWRWTRMTLTRAHYKVDGQLCLHWRPNSENLRGNLQIWWQLKNWLQNQLIQQGLSLMII*", "nuc": "TAGTAGTAGACTCCTTGAGAAGCTACTGCTGCGAAAGCTGGAATGAGCACCCTCCAAGAATTGCAGGAAAACATCACAGCACACGAACAACAGCTCGTGACTGCTCGGCAAAAGCTTAAGGATGCCGAGAAGGCAGTGGAGGTGGACCCGGATGACGTTAACAAGAGCACACTACAAAGTAGACGGGCAGCTGTGTCTACATTGGAGACCAAACTCGGAGAACTTAAGAGGCAACTTGCAGATTTGGTGGCAGCTCAAAAATTGGCTACAAAACCAGTTGATCCAACAGGGCTTGAGCCTGATGATCATCTAAAGGAAAAATCATCTCTGAGATATGGGAATGTCCTGGATGTTAATTCAATTGATTTGGAAGAACCGAGTGGACAGACTGCTGATTGGAAGGCTATAGGAGCATACATCTTAGGGTTTGCAATTCCGATCATCCTAAAGGCCTTATACATGCTGTCAACCCGTGGGAGACAAACTGTGAAAGACAACAAAGGGACCAGGATAAGGTTTAAGGATGATTCTTCCTTTGAAGAAGTCAATGGGATACGTAAACCAAAACACCTTTACGTCTCAATGCCAACTGCACAGTCCACTATGAAGGCTGAAGAAATCACGCCAGGACGATTTAGGACAATTGCTTGTGGCCTTTTTCCAGCACAGGTCAAAGCCCGAAATATAATAAGTCCTGTAATGGGAGTAATTGGATTTGGCTTCTTTGTAAAGGATTGGATGGATCGGATAGAAGAGTTTCTGGCTGCAGAGTGTCCATTCTTACCTAAGCCAAAGGTCGCCTCAGAAGCCTTCATGTCTACCAATAAGATGTATTTTCTGAACAGACAGAGACAAGTCAATGAATCTAAGGTTCAAGATATTATCGATTTGATAGACCATGCTGAGACCGAGTCTGCTACCTTGTTTACAGAGATTGCAACACCCCATTCAGTCTGGGTGTTTGCATGTGCACCTGACCGGTGCCCTCCAACTGCATTGTATGTTGCAGGGGTACCGGAACTTGGTGCATTTTTTTCTATCCTTCAGGACATGCGTAATACCATCATGGCATCTAAATCTGTAGGGACTGCAGAAGAGAAGCTAAAGAAAAAATCTGCCTTCTACCAATCATACCTAAGAAGGACACAATCTATGGGAATCCAACTGGACCAGAAGATCATAATCCTTTACATGCTATCATGGGGTAAAGAAGCTGTGAATCACTTCCATCTTGGTGATGATATGGACCCTGAACTCAGGCAGCTAGCACAATCTCTGATCGATACTAAGGTGAAGGAGATCTCCAACCAAGAGCCACTTAAGTTGTAGGTGCTTAATGAAATCATGATTGAAGAAAGACTTTCCGGGCTTGTGCCACATATTAATCATCTCAGGACCTATCCTTAATGTGATTAATAGGGTTTTATTATAAGGGCAGTTAATGGGGTTGGTTACTAACTATGGGTAAGGGTTCATTACCATTTTTGCACTAGGGTTAAAGGGCCACTACATTGTATTTGCACTAAGGGAAATGGGAGGTGGGTTAGTTTGTATTTAGTTGTTAAGTTTTTTATAATCATATGTTAATGAGGAATTAGCTATATGATATCACTGATTGATTGGCTATTTTTAGGTTAAGTAATTGTAGTTAAATAGTTGTGTTAAGTTAGTATGTTAAGGTTTATAGGTTAAGATTTACTAACAATCATATTATGTCATTAGATGTAAATTTCATTCCTGGCTTGCTTCTGCTTTCGCATTGCTAACCTACAACAAGACTACCTCACCCACTACCCCTCCCCTATTCTACCTCAACACATACTACCTCACATTTGATTTTTCTTGATTGCTTTTCAAGGAGCATACTACTA"}} \ No newline at end of file diff --git a/data_output/community/itps/orov/L/refseq/unreleased/dataset.zip b/data_output/community/itps/orov/L/refseq/unreleased/dataset.zip index 24e826e80..cfe6a6ca9 100644 Binary files a/data_output/community/itps/orov/L/refseq/unreleased/dataset.zip and b/data_output/community/itps/orov/L/refseq/unreleased/dataset.zip differ diff --git a/data_output/community/itps/orov/L/refseq/unreleased/pathogen.json b/data_output/community/itps/orov/L/refseq/unreleased/pathogen.json index cd447b3af..1fcbe4c07 100644 --- a/data_output/community/itps/orov/L/refseq/unreleased/pathogen.json +++ b/data_output/community/itps/orov/L/refseq/unreleased/pathogen.json @@ -7,25 +7,13 @@ "attributes": { "name": "orov/L/refseq", "reference accession": "NC_005776.1", - "reference name": "Oropouche virus, L segment" + "reference name": "Oropouche virus, L segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 43 - }, - { - "begin": 6796, - "end": 6846 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data_output/community/itps/orov/L/refseq/unreleased/tree.json b/data_output/community/itps/orov/L/refseq/unreleased/tree.json index 8052bdbde..ad107fe9f 100644 --- a/data_output/community/itps/orov/L/refseq/unreleased/tree.json +++ b/data_output/community/itps/orov/L/refseq/unreleased/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -85,7 +85,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 43 + }, + { + "begin": 6796, + "end": 6846 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -10338,4 +10352,4 @@ "L": "MSQLLLNQYRNRILHCREPEIAKDIWRDLLNDRHNYFSREFCRAANLEYRNDVPAEDICAEVLDGYKARKVRFCTPDNYLLHDGKMYIIDFKVSVDDRSSRITREKYNEIFGEVFNPEGVDFEIVIIRLDPSNMTIHVDSRDFVNTIGPITLNISMQWFFDMKDFLFGKFRDDDKFHAIISQGEFTMTLPWIEEDTPELLTHPIYNEFMSSMPEAEQALFKEALEFKSFGAEKWNIFLKGVMSKYGEYYKEFTKGHAHSIFLTTGDYPKPDKDQISAGWREMVNRVSSERDMSNDINQEKPSMHFIWAKNDSNSNNNIQKLIKLSKSLQAMSGTGSYVNAFKSLGRLMDISSDVKKYESFCGKLKSLARSSIKKLDRKIEPIQIGTATVLWEQQFKLDTDVIKREDRIHLMKDYLGIGKHKSFSKKLNNDINTDKPKILNFNNDDIVRKCKDKYNQVIHNLSQINELDKIGNYLEHFSAKISACSVEMWDFIYNTTKTKYWQCINDYSTLMKNMLAVSQYNRHNTFRIVSCANNNVFGLVMPSSDIKTKKATLVYAIMALHNEEAEIAELGSLYSTFKTATGYISISKAFRLDKERCQRIVSSPGLFLMTSCLLFNGNKSLEFDKLLGFSFFTSISITKAMLSLTEPSRYMIMNSLAVSSHVREYISEKFSPYTKTSFSVVMTDLIKKGCYSAYEQRKKVQIRDIKLTDYDITQKGVDSKRDLKSIWFPGKVNLKEYLNQIYLPFYFNSKGLHEKHHVLIDLAKTVLEIEKEQRESLPEPWSEIPAKRLSLNVLIYSLQELNLDTSRHNFVRSRVENANNFNRSITTISTFTSSKSCIKIGDFEEEKREKLRMIQKKLAKDISKLTIANPAFLDEITNEHEIRHSTYEDLKQSIPDYTDYMSVKVFDRLYEKITTNEINDKETVKLILETMKKHKIFHFGFFNKGQKTAKDREIFLGEFEAKMCLYLVERIAKERCKLNPEEMISEPGDSKLRVLEKQSEDEIRYISNTIKTLGNAIENLQSGSLNWADICENKARGLKIEINADMSKWSAQDVLFKYFWLIVLDPILYPAERKRIIYFLCNYMQKRLIMPDELLTTILDQRVPYSNDIIGLMTNNYRSNTVEIKRNWLQGNLNYTSSYLHSCSMSVYKDIIREAAILLEGEALVNSMVHSDDNQTSICMVQNKLPDDNIIEFCIKIFEKICLTFGNQANMKKTYLTNFIKEFVSLFNIHGEPFSIYGRFLLTAVGDCAYLGPYEDLASRLSATQTAIKHGCPPSLAWVSIALNHWITHTTYNMLPGQNNDPLPFFPTNNRSEIPVEMCGILESDLSTIALTGLEAGNVTFLTNIARKLSSPILQRESIQDQYNSIEKWDLSKLSQIDILRLKMLRYISLDSSVTSDDGMGETSEMRSRSLLTPRKFTTSGSLNRLKSYKDFQDIIADEDKTNELFENFIRHPELLVTKGETFEEFVNTILFRYNSKKFKESLSIQNPAQLFIEQILFSNKPVIDYTSIHDKIFGLQDMPGIEELDTIIGRKTFVESYVQIVDDLSNLTLDINDVKTIFAFCLMNDPLLITSANNIIMSVKGHSQERIGQSACKMPEVRSLKLIHYSPAVVLRAYVRGPTNVPNVDIDELARDLSHLEDFIQSTKLRENMRERIEINEKRHLGRDFKFEIKELTRFYQVCYDYIKSTEHKVKVFILPYKVFTSIEFCGALTGNLINDKLWYITHYLKNIVSTTHKAQISSSPELELQIADEALRLVAHFADTFLASESRIQFLKKIIEEFTYKGIPVKHLYSKIKNSKLRVKFLGILLWLDDLTQNDLDKFDADKSDEKIIWNNWQVSRDMNTGPIDLMISGYSRQLRITGEDDKLIAAELQVTRLSEDLIYRHGQAMLNKPHGLKLEKMQPVTEMSKRLHYIVFQQRSRKRYFYSILPTQVIEDHNSRVESSRLSRDSKWVPVCPVAISKLYQQGRPILSKVRNLNMQTHSLSRIQVNVDEYAITRRAHFQKMPFFEGPSIPSGGMDLSELMKSTSLLSLNYDNIKNASLLDMSRVFKCNGSGDDQMAFEFLSDEILEQDVVEEIECNPIFSISYTKRGESNMTYKNAFHKALISECDKFEEAFDFLDMGFCSNENLSILEEIHWIISYLKTNQWSTELDNCIHMCMYRNGYDAEYHKFDIPSKFLKDPINRTINWTEVIEFILLIEDFQTKIEPWSSMKSHFCSKAHSVALECMKNEKRSLAEFVDKSKKTGKSKFDF*", "nuc": "AGTAGTGTGCTCCTATTCCGAAACAAACAAAAACAATCTCAAAATGTCACAACTGTTGCTCAACCAATATCGGAATAGGATATTGCACTGCCGTGAACCTGAGATAGCAAAGGATATATGGCGAGATCTATTAAATGATCGACACAATTACTTTTCTCGGGAATTTTGCAGAGCTGCAAATCTTGAGTACAGAAATGATGTTCCTGCTGAGGATATTTGTGCTGAAGTTCTTGATGGTTATAAAGCAAGGAAAGTTCGCTTTTGTACACCTGATAATTACTTACTACATGATGGAAAGATGTATATAATAGACTTCAAAGTGTCTGTAGACGACCGATCTTCTAGAATCACAAGGGAGAAATATAATGAGATTTTTGGAGAGGTATTCAATCCAGAAGGTGTAGATTTTGAAATTGTTATTATTAGATTAGATCCTTCAAATATGACGATACATGTGGACTCTCGAGATTTCGTGAATACAATTGGGCCGATTACATTAAACATTAGTATGCAATGGTTTTTTGATATGAAAGACTTCTTGTTCGGGAAATTTCGGGATGATGATAAATTCCATGCTATAATAAGTCAAGGAGAATTCACAATGACATTGCCATGGATTGAAGAAGACACCCCAGAATTGCTTACTCATCCTATATACAATGAATTCATGAGTTCAATGCCAGAGGCAGAACAGGCCCTATTCAAGGAAGCATTGGAATTCAAATCATTTGGGGCAGAAAAATGGAATATCTTTTTGAAGGGGGTGATGTCAAAGTATGGTGAATATTATAAAGAATTTACTAAAGGACATGCTCATTCTATATTTCTGACAACAGGGGACTACCCCAAGCCAGACAAAGACCAAATTTCAGCAGGTTGGAGAGAAATGGTAAACAGAGTAAGCTCTGAACGTGACATGTCAAATGACATAAATCAGGAAAAACCAAGCATGCATTTTATATGGGCAAAGAATGATTCAAATAGCAACAATAATATACAAAAGCTAATCAAACTATCTAAATCACTGCAAGCTATGAGCGGGACAGGGAGCTATGTAAATGCTTTCAAGTCATTAGGGAGATTAATGGATATATCATCAGATGTTAAAAAATATGAATCATTTTGTGGGAAATTGAAATCTCTGGCAAGGTCTAGTATAAAAAAACTTGACAGGAAAATAGAGCCAATACAAATTGGGACTGCAACTGTCTTATGGGAACAGCAATTTAAACTAGATACAGATGTTATAAAAAGAGAAGACAGAATACATTTAATGAAAGATTATCTTGGGATCGGTAAGCACAAATCATTTTCAAAGAAATTAAACAACGACATAAATACTGATAAGCCTAAAATATTAAATTTCAACAATGATGATATAGTCAGGAAATGCAAAGATAAATATAATCAAGTCATACATAACCTATCCCAAATCAATGAATTAGATAAGATTGGAAACTACCTAGAGCACTTTTCAGCTAAAATTAGTGCCTGCAGTGTAGAAATGTGGGATTTTATATATAATACAACCAAAACTAAATACTGGCAATGCATCAATGACTATTCCACCCTAATGAAAAACATGTTAGCTGTCTCTCAATATAATAGACACAATACGTTTAGAATTGTCTCATGTGCAAACAATAATGTATTTGGTCTAGTAATGCCAAGCTCAGATATAAAGACAAAAAAAGCAACTTTAGTCTATGCAATAATGGCTCTCCATAATGAGGAGGCAGAAATAGCAGAACTTGGCTCACTCTACTCAACTTTTAAGACAGCAACAGGATATATTTCAATATCAAAGGCTTTTAGGCTGGATAAAGAAAGATGCCAACGCATAGTATCCTCTCCAGGCTTGTTCCTCATGACAAGCTGCCTATTATTCAACGGTAACAAGAGTTTAGAATTTGATAAATTACTAGGATTTTCATTTTTTACGTCAATATCAATTACGAAAGCTATGCTCTCCCTTACTGAGCCTTCACGTTATATGATCATGAACTCGTTAGCAGTTTCCAGCCATGTAAGAGAGTATATATCTGAAAAATTCTCCCCTTATACAAAAACATCATTTTCTGTGGTAATGACAGACTTAATCAAGAAGGGTTGCTATTCAGCATATGAACAGAGAAAAAAAGTACAAATAAGAGACATAAAATTAACAGATTATGATATAACACAAAAGGGAGTGGATTCCAAAAGAGATCTTAAATCTATTTGGTTCCCAGGAAAGGTAAACCTGAAAGAATATTTAAACCAAATTTATCTACCATTTTATTTTAACTCTAAAGGATTACATGAAAAACATCATGTCTTGATAGATTTGGCTAAAACAGTACTAGAAATCGAAAAAGAGCAAAGGGAGTCATTACCTGAGCCATGGTCAGAGATACCTGCTAAGCGACTGTCACTTAATGTTTTAATTTACTCATTGCAGGAACTGAATTTAGATACTTCAAGACATAATTTTGTAAGAAGCCGGGTGGAAAACGCAAATAATTTCAACAGATCTATAACGACAATATCTACTTTTACCAGCTCAAAATCATGCATTAAGATTGGTGATTTTGAAGAAGAAAAAAGAGAAAAACTAAGAATGATACAAAAGAAACTTGCAAAGGATATTTCTAAATTAACCATAGCCAACCCAGCATTCTTAGATGAGATCACAAACGAACATGAGATAAGGCATTCAACTTATGAGGACTTAAAACAATCTATCCCAGATTACACAGATTATATGTCTGTGAAAGTTTTTGACAGATTGTACGAGAAGATTACTACCAATGAAATAAATGATAAGGAAACAGTCAAGCTGATTCTAGAGACCATGAAAAAACATAAAATATTTCATTTTGGATTCTTCAATAAAGGACAAAAAACAGCCAAAGATAGAGAAATATTTTTAGGTGAATTTGAAGCAAAAATGTGTCTGTACCTTGTCGAAAGAATAGCTAAAGAGAGGTGCAAATTAAACCCTGAAGAAATGATAAGTGAACCAGGCGACTCGAAACTAAGGGTATTAGAGAAGCAATCAGAAGACGAAATCAGGTATATTAGCAATACAATAAAGACATTAGGGAATGCCATAGAGAACTTGCAATCTGGATCTTTAAATTGGGCAGATATATGCGAAAACAAAGCAAGAGGACTTAAGATAGAAATAAATGCTGATATGTCCAAATGGAGTGCCCAAGATGTACTTTTTAAATATTTTTGGTTGATAGTGCTTGATCCCATCTTATATCCTGCTGAGAGGAAAAGGATAATTTATTTCCTCTGTAATTATATGCAGAAAAGGCTTATAATGCCCGATGAATTGCTCACTACTATATTGGATCAAAGAGTTCCTTATTCAAATGACATAATTGGATTAATGACAAACAATTATAGGTCTAATACAGTAGAAATAAAGCGTAACTGGCTTCAAGGCAACTTAAATTATACAAGCAGTTACTTACACAGCTGTAGTATGTCTGTGTACAAAGATATAATAAGAGAAGCAGCAATATTATTAGAAGGAGAAGCCCTTGTGAACTCAATGGTACATTCTGATGATAATCAAACATCTATATGTATGGTGCAGAATAAATTACCAGATGACAATATAATTGAATTTTGCATTAAGATATTCGAGAAGATATGCTTAACTTTTGGCAATCAGGCAAATATGAAGAAGACATATCTAACTAACTTCATCAAAGAGTTTGTTTCTTTATTTAATATACATGGAGAACCATTTTCTATATATGGGAGATTTCTACTCACAGCAGTAGGAGACTGTGCCTATCTAGGGCCTTATGAAGATTTAGCAAGTAGGCTATCTGCAACACAAACTGCTATAAAGCATGGTTGCCCACCATCACTTGCATGGGTATCTATCGCTCTAAATCACTGGATAACCCACACTACATATAATATGTTGCCTGGCCAAAATAATGACCCGTTACCATTCTTCCCTACTAACAATAGAAGTGAAATACCAGTAGAGATGTGCGGAATACTAGAAAGTGATTTATCAACAATTGCACTAACTGGTTTAGAAGCAGGGAATGTCACGTTTCTAACAAATATAGCAAGGAAGTTATCATCCCCAATCTTACAAAGAGAAAGTATTCAAGATCAATACAATTCTATAGAAAAGTGGGATCTGAGCAAATTATCACAGATCGACATTCTAAGGCTTAAAATGCTCAGGTATATATCTCTTGATAGTTCAGTCACATCTGATGATGGTATGGGGGAGACTAGTGAAATGAGATCTCGATCACTTTTAACACCTCGTAAATTCACAACAAGTGGGTCACTTAATAGGTTGAAATCATATAAAGACTTTCAAGATATAATAGCAGATGAGGACAAGACAAACGAACTATTTGAGAATTTCATTAGACACCCAGAGTTACTGGTTACAAAAGGCGAAACATTTGAAGAATTTGTTAATACGATATTATTTAGGTACAATTCAAAGAAATTCAAAGAATCTTTGTCAATACAAAACCCAGCACAGCTTTTTATTGAGCAAATATTATTTTCCAATAAACCAGTAATTGACTACACTAGCATACATGACAAGATTTTTGGATTACAAGACATGCCAGGAATTGAAGAACTAGATACAATTATAGGTCGCAAAACATTTGTTGAGAGTTATGTTCAAATCGTAGATGACTTAAGCAATTTAACATTGGATATAAACGATGTCAAGACTATATTTGCCTTTTGTCTTATGAATGACCCACTACTGATCACATCTGCTAACAATATAATAATGTCTGTTAAGGGACATAGTCAAGAAAGAATAGGTCAATCAGCATGCAAAATGCCAGAGGTCCGAAGTCTAAAACTCATACATTATTCACCAGCAGTTGTTTTGAGAGCCTATGTGAGAGGGCCAACAAATGTACCGAATGTAGATATAGATGAACTTGCAAGGGATCTATCTCATTTAGAAGACTTCATACAAAGTACAAAACTCAGAGAAAATATGAGAGAGAGAATAGAAATAAATGAGAAGCGGCACTTAGGAAGGGATTTCAAATTTGAAATCAAAGAACTAACTAGATTTTACCAAGTGTGTTATGATTACATAAAGTCTACAGAACATAAAGTCAAGGTATTCATATTGCCATACAAAGTTTTCACATCAATAGAATTCTGCGGGGCACTGACAGGTAACTTGATAAATGACAAATTATGGTACATAACGCATTATCTGAAAAATATAGTGTCTACTACACATAAGGCACAAATTTCTTCTTCACCTGAATTGGAATTGCAAATTGCTGATGAGGCACTAAGACTAGTAGCACATTTTGCTGATACTTTCTTGGCATCAGAATCAAGAATACAATTTCTGAAGAAAATTATTGAAGAATTCACATACAAAGGGATACCTGTAAAACATTTATACTCAAAAATAAAGAACTCCAAGTTGAGGGTTAAATTTCTAGGGATTCTTTTATGGTTAGATGATCTAACACAGAATGATCTGGATAAATTTGATGCAGATAAATCAGATGAAAAGATTATATGGAATAACTGGCAAGTGTCAAGAGATATGAATACTGGACCAATAGACTTAATGATAAGCGGTTACTCTAGACAGCTGCGGATCACTGGGGAAGATGACAAATTGATTGCTGCTGAATTGCAGGTTACTAGATTGTCAGAAGATTTAATTTATAGACACGGTCAGGCAATGTTGAATAAGCCACACGGCTTAAAGCTTGAAAAAATGCAACCTGTGACTGAGATGTCTAAACGATTACATTATATCGTTTTCCAGCAAAGATCACGGAAACGATACTTCTATTCTATATTACCCACCCAAGTAATTGAGGACCATAATTCTAGAGTTGAATCATCTAGGCTAAGCAGAGATTCAAAATGGGTTCCTGTATGCCCTGTTGCAATATCAAAACTCTACCAACAAGGACGGCCTATACTTTCCAAAGTTAGAAATCTGAATATGCAGACTCATTCGCTTTCCAGAATACAAGTTAATGTAGATGAATATGCCATCACGAGAAGAGCACATTTTCAGAAAATGCCTTTCTTCGAAGGACCATCAATCCCTTCTGGTGGTATGGATTTGTCTGAGTTGATGAAATCTACATCCCTATTAAGCTTGAATTATGATAACATAAAAAATGCATCCTTATTGGACATGTCTAGGGTATTTAAGTGCAATGGCAGTGGAGATGACCAAATGGCTTTCGAATTTCTATCGGACGAAATTTTGGAGCAAGATGTAGTTGAAGAAATAGAATGCAACCCTATATTTTCTATTAGTTATACAAAAAGAGGAGAATCCAATATGACTTATAAAAATGCTTTCCACAAAGCCTTAATCTCAGAATGTGACAAATTTGAAGAAGCATTTGACTTCCTCGACATGGGATTTTGCTCGAATGAAAATCTTAGTATTCTGGAGGAAATACATTGGATAATCAGTTATTTAAAAACAAATCAATGGTCTACGGAACTAGACAATTGTATTCACATGTGCATGTACAGGAATGGATATGATGCAGAATATCATAAATTTGATATACCCTCTAAATTCCTCAAAGACCCAATAAACCGAACAATAAATTGGACTGAAGTCATTGAATTTATATTATTAATTGAAGATTTCCAAACAAAAATTGAGCCATGGTCTAGTATGAAGTCACACTTCTGTTCAAAAGCACACAGTGTAGCACTAGAGTGTATGAAAAATGAGAAAAGATCATTGGCAGAATTTGTAGACAAAAGTAAGAAAACTGGCAAATCCAAATTTGACTTCTAAGGTATACACATGTAAAAGTAGTGTTTGTTTCTAAATAGGAGCACACTACT" } -} \ No newline at end of file +} diff --git a/data_output/community/itps/orov/L/tefe/unreleased/dataset.zip b/data_output/community/itps/orov/L/tefe/unreleased/dataset.zip index c6b6f24f9..424ccddc6 100644 Binary files a/data_output/community/itps/orov/L/tefe/unreleased/dataset.zip and b/data_output/community/itps/orov/L/tefe/unreleased/dataset.zip differ diff --git a/data_output/community/itps/orov/L/tefe/unreleased/pathogen.json b/data_output/community/itps/orov/L/tefe/unreleased/pathogen.json index ee433a3b6..bca26ae6d 100644 --- a/data_output/community/itps/orov/L/tefe/unreleased/pathogen.json +++ b/data_output/community/itps/orov/L/tefe/unreleased/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/L/tefe", "reference accession": "PP154172.1", - "reference name": "Oropouche virus ILMD_TF29 (tefe), L segment" + "reference name": "Oropouche virus ILMD_TF29 (tefe), L segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 35 - }, - { - "begin": 6794, - "end": 6814 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data_output/community/itps/orov/L/tefe/unreleased/tree.json b/data_output/community/itps/orov/L/tefe/unreleased/tree.json index cd5a4f5e4..855753c83 100644 --- a/data_output/community/itps/orov/L/tefe/unreleased/tree.json +++ b/data_output/community/itps/orov/L/tefe/unreleased/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -81,7 +81,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 35 + }, + { + "begin": 6794, + "end": 6814 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -9958,4 +9972,4 @@ "L": "MSQLLLNQYRNRILHCREPEIAKDIWRDLLNDRHNYFSREFCRAANLEYRNDVPAEDICAEVLDGYKARKVRFCTPDNYLLHDGKMYIIDFKVSVDDRSSRITREKYNEIFGEVFNPEGVDFEIVIIRLDPSNMAIHVDSRDFMNTIGPITLNISMQWFFDMKDFLFGKFRDDDKFHAIISQGEFTMTLPWTEEDTPELLTHPIYNEFMNSMPESEQALFKEALEFKSFGAEKWNIFLKGVMSKYGEYYKEFTKGHAQSIFLATGDYPKPDKDQISAGWREMVSRVSSERDMSNDINQEKPSIHFIWAQNDSSSNNNIQKLIKLSKSLQAMSGTGSYVSAFKSLGRLMDISSDIKKYESFCGKLKSLARSSVKKLDRKIEPVQIGTATVLWEQQFKLDTDVIKREDRIHLMKDYFGIGKHKSFSKKLNNDINTDKPKILNFDNDDIVRKCKDKYNQVTHNLSQVNELDKIGNYLEHFSAKISACSVEMWDFIYNTTKTKYWQCINDYSTLMKNMLAVSQYNRHNTFRIVSCANNNVFGLVMPSSDIKTKKATLVYAIIALHNEETEIAELGSLYSTFKTTTGYISISKAFRLDKERCQRIVSSPGLFLMTSCLLFNGNKSLEFDKLLGFSFFTSISITKAMLSLTEPSRYMIMNSLAVSSHVKEYISEKFSPYTKTAFSVVMTDLIKKGCYSAYEQRKKVQIRDIKLTDYDITQKGVDSKRDLKSIWFPGKVNLKEYLNQIYLPFYFNSKGLHEKHHVLIDLAKTVLEIEKEQRESLPEPWSEIPAKQTVNLNILIYSIARNLNLDTSRHNFVRSRVENANNFNRSITTISTFTSSKSCIKIGDFEEEKKKKTKNDAKKLAKDISKLTIANPAFLDEITNEHEIRHSTYEDLKQSIPDYTDYMSVKVFDRLYEKITTNEISDKETVKLILETMKKHKIFYFGFFNKGQKTAKDREIFLGEFEAKMCLYLVERIAKERCKLNPEEMISEPGDSKLRVLEKQSEDEIRYISNTIKTLGNAIENLQSGSLNWADICESKARGLKIEINADMSKWSAQDVLFKYFWLIVLDPILYPAERKRIIYFLCNYMQKRLIMPDELLTTILDQRVPYSNDIIGLMTNNYRSNTVEIKRNWLQGNLNYTSSYLHSCSMSVYKDIIREAATLLEGEALVNSMVHSDDNQTSICMVQNKLPDDNVIEFCIKIFEKICLTFGNQANMKKTYLTNFIKEFVSLFNIHGEPFSIYGRFLLTAVGDCAYLGPYEDLASRLSATQTAIKHGCPPSLAWVSIALNHWITHTTYNMLPGQNNDPLPFFPTNNRNEIPVEMCGILESDLSTIALTGLEAGNVTFLTNIARKLSSPILQRESIQDQYNSIEKWDLSRLSQIDILRLKMLRYISLDSSVTSDDGMGETSEMRSRSLLTPRKFTTSGSLNRLKSYKDFQNIITDEDKTNELFENFIRHPELLVTKGETFEEFVNTILFRYNSKKFKESLSIQNPAQLFIEQILFSNKPIIDYTSIHDKIFGLQDMPGIEELDTIIGRKTFVESYVQIVDDLSNLTLDINDVKTIFAFCLMNDPLLITSANNIIMSVKGHSQERIGQSACKMPEVRSLKLIHYSPAVVLRAYVRGPTNVPNADIDELARDLSHLEDFIQSTKLRENMRERIEINEKRHLGRDFKFEIKELTRFYQVCYDYIKSTEHKIKVFILPYKVFTSIEFCGALTGNLINDKLWYITHYLKNIVSTTHKAQISSSPELELQIADEALRLIAHFADTFLAPESRIQFLKKVIEEFTYKGIPVKHLYSKIKNSKLRVKFLGILLWLDDLTQNDLDKFDADKSDEKIIWNNWQVSRDMNTGPIDLMISGYSRQLRITGEDDKLIAAELQVTRLSEDLIYRHGQAMLNKPHGLKLEKMQPVTEMSKQLHYIVFQQRSRKRYFYSILPTQIIEDHNSRIESSRLNRDSKWVPVCPVAVSKLYQQGRPILSKVKNLNMQTHSLSRIQVNVDEYAITRRAHFQKMPFFEGPSIPSGGMDLSELMKSTSLLSLNYDNIKNASLLDMSRVFKCNGSENDQMAFEFLSDEILEQDVVEEIECNPIFSISYTKRGESNMTYKNAFHKALISECDKFEEAFDFLDMGFCSNENLSILEEIHWIISYLKTNQWSTELDNCIHMCMYRNGYDAEYHRFDIPSKFLKDPINRTVNWTEVIEFILLIEDFQTKIEPWSSMKSHFCSKAHSVALECMKSEKRSLAEFVDKSKKTGKSKFDF*", "nuc": "ACTCCTATTTCGAAACAAACAAAAACAATCTCAAAATGTCGCAACTGTTACTCAACCAATATCGAAATAGGATATTGCACTGCCGTGAACCTGAAATAGCAAAGGATATATGGCGTGATCTATTGAATGATCGACACAACTACTTTTCTCGAGAATTTTGCAGAGCTGCAAACCTTGAGTATAGAAATGATGTTCCTGCTGAGGATATTTGTGCTGAAGTCCTCGATGGTTACAAAGCAAGGAAAGTGCGCTTTTGCACACCTGATAATTACTTACTACACGACGGGAAAATGTATATAATAGATTTCAAAGTGTCTGTGGACGATCGGTCTTCCAGAATTACAAGAGAGAAATACAATGAAATTTTTGGAGAAGTGTTCAACCCAGAAGGTGTGGACTTTGAAATCGTTATTATCAGGTTGGATCCTTCAAATATGGCTATACATGTTGACTCTCGAGATTTCATGAATACAATCGGACCAATCACGCTAAACATTAGTATGCAATGGTTTTTTGATATGAAAGACTTCTTATTTGGCAAATTCCGGGATGATGATAAATTCCATGCTATAATAAGTCAAGGAGAATTCACAATGACATTGCCATGGACCGAAGAAGATACTCCAGAATTGCTTACTCATCCTATATACAATGAGTTCATGAATTCAATGCCAGAGTCAGAACAGGCCCTGTTCAAAGAAGCATTGGAATTCAAATCATTCGGAGCAGAAAAATGGAATATTTTCTTAAAGGGAGTGATGTCTAAGTATGGTGAATATTATAAAGAATTTACCAAAGGACATGCCCAATCCATATTCTTGGCAACAGGGGACTACCCCAAACCAGATAAGGACCAAATTTCAGCTGGCTGGCGAGAGATGGTAAGTAGAGTGAGCTCTGAACGTGACATGTCAAATGACATAAATCAGGAAAAACCAAGCATACATTTTATATGGGCACAAAATGACTCAAGTAGCAATAATAACATACAGAAATTAATCAAACTATCCAAATCATTGCAAGCCATGAGTGGAACAGGAAGCTATGTAAGTGCTTTTAAATCATTAGGAAGATTGATGGATATATCATCAGACATCAAAAAGTATGAGTCGTTCTGCGGAAAATTAAAATCTTTGGCAAGGTCTAGCGTAAAGAAACTCGACAGGAAAATAGAACCGGTACAAATTGGAACAGCAACTGTCTTATGGGAGCAACAATTTAAATTAGATACGGATGTCATAAAAAGAGAGGACAGAATACATTTAATGAAAGATTATTTCGGAATTGGTAAACACAAGTCTTTTTCAAAAAAGCTAAACAATGACATAAATACCGATAAGCCTAAAATATTGAATTTTGACAATGACGATATAGTTAGGAAATGCAAAGATAAATATAACCAAGTCACACATAACTTGTCTCAAGTTAATGAATTAGACAAGATTGGAAATTATCTAGAGCATTTTTCAGCTAAAATTAGTGCCTGCAGTGTAGAAATGTGGGACTTTATATATAATACGACTAAAACCAAGTACTGGCAATGCATCAACGACTACTCTACCCTAATGAAAAACATGCTAGCTGTTTCCCAATATAATAGGCACAATACCTTTAGGATTGTCTCGTGTGCGAATAACAATGTATTTGGCCTAGTGATGCCAAGCTCAGACATAAAAACAAAAAAAGCAACATTAGTCTATGCAATAATAGCTCTCCACAATGAGGAGACAGAGATAGCAGAACTTGGTTCACTCTATTCCACTTTCAAGACAACAACAGGCTATATTTCAATATCAAAAGCTTTTAGGCTAGATAAAGAAAGGTGCCAGCGCATAGTGTCCTCTCCAGGCTTATTTCTTATGACAAGCTGTCTATTATTCAATGGTAATAAGAGTCTAGAGTTTGATAAGTTACTAGGCTTTTCATTTTTTACATCAATATCGATTACAAAAGCTATGCTCTCTCTTACTGAGCCTTCACGCTATATGATCATGAATTCATTGGCAGTTTCTAGCCATGTAAAAGAGTATATATCTGAAAAATTTTCTCCTTATACAAAAACAGCATTTTCTGTAGTGATGACAGATTTGATTAAAAAAGGTTGCTATTCAGCATATGAACAGAGGAAAAAGGTCCAAATAAGGGATATAAAGTTAACAGACTACGATATAACACAGAAAGGGGTAGATTCCAAAAGAGATCTTAAATCCATTTGGTTCCCGGGAAAGGTAAATTTAAAAGAATACTTGAACCAGATTTATTTACCATTTTATTTTAATTCCAAAGGATTGCATGAAAAGCATCATGTTTTAATAGATTTGGCTAAAACAGTGCTAGAAATCGAAAAAGAGCAAAGAGAATCATTACCTGAGCCATGGTCAGAGATACCTGCTAAGCAGACTGTCAACTTAAATATTTTGATTTACTCAATTGCAAGGAATTTGAACTTAGATACTTCAAGACATAATTTTGTGAGGAGCCGGGTGGAAAATGCAAATAACTTTAACAGATCTATAACAACAATATCCACCTTTACCAGCTCGAAATCATGCATTAAAATTGGTGATTTTGAGGAGGAGAAAAAGAAGAAAACTAAAAATGATGCAAAGAAACTAGCAAAAGATATTTCTAAATTAACTATAGCCAACCCAGCATTCTTAGATGAAATCACAAATGAACATGAGATAAGACACTCAACTTATGAGGATTTGAAACAATCTATCCCAGATTACACAGACTATATGTCTGTAAAAGTTTTTGACAGACTATATGAGAAGATTACTACTAACGAAATAAGTGATAAAGAAACAGTCAAGTTGATTCTAGAGACTATGAAGAAGCATAAAATATTTTACTTCGGATTCTTCAACAAAGGACAAAAAACAGCTAAAGATAGAGAAATATTTTTAGGTGAATTCGAGGCAAAAATGTGCCTGTACCTTGTTGAAAGAATAGCCAAAGAGAGATGCAAATTAAACCCAGAAGAAATGATAAGCGAACCAGGCGACTCTAAGTTAAGAGTATTAGAAAAGCAATCAGAAGATGAAATTAGGTATATCAGCAACACAATAAAGACATTGGGAAATGCCATAGAAAACCTGCAATCCGGGTCTTTAAATTGGGCAGATATATGTGAAAGTAAGGCACGAGGGCTTAAAATAGAAATAAATGCTGATATGTCTAAATGGAGTGCCCAAGATGTACTTTTCAAGTATTTCTGGCTGATAGTACTTGATCCTATCTTATATCCTGCTGAGAGGAAGAGAATAATTTATTTTCTATGTAATTATATGCAAAAAAGGCTTATAATGCCTGATGAATTGCTCACTACAATATTGGACCAGAGGGTTCCTTATTCAAATGATATAATTGGGTTGATGACAAACAATTACAGATCCAACACAGTAGAAATAAAGCGCAACTGGCTTCAAGGCAATTTAAATTATACAAGTAGTTACTTGCACAGCTGTAGTATGTCTGTATATAAAGACATAATAAGGGAAGCAGCAACATTATTAGAAGGGGAAGCCCTTGTGAATTCAATGGTACATTCTGATGATAATCAAACATCCATATGTATGGTGCAAAACAAGTTGCCAGATGACAATGTAATTGAATTTTGCATCAAGATATTCGAGAAGATATGTTTAACTTTTGGAAATCAGGCAAACATGAAAAAGACATACCTAACCAACTTCATCAAGGAATTTGTTTCTTTATTTAATATACACGGGGAGCCATTCTCTATATACGGGAGGTTTTTGCTTACAGCAGTAGGGGACTGTGCCTATCTGGGGCCTTATGAAGATTTAGCAAGTAGGCTATCTGCAACACAAACTGCTATAAAGCATGGCTGCCCACCATCACTGGCATGGGTATCCATTGCTTTGAATCACTGGATAACTCACACCACGTATAATATGTTACCTGGCCAAAATAATGACCCATTACCATTCTTCCCTACCAACAATAGAAATGAAATACCAGTGGAGATGTGTGGAATACTAGAAAGTGACTTATCAACAATTGCACTAACCGGTTTAGAAGCGGGAAATGTCACGTTTCTAACAAATATAGCAAGAAAACTATCATCTCCAATCTTGCAAAGAGAAAGTATCCAAGACCAATACAATTCTATAGAAAAATGGGACCTAAGTAGGTTATCGCAGATTGACATTCTGAGGCTTAAAATGCTTAGGTACATATCTCTTGATAGTTCGGTCACATCTGATGACGGTATGGGGGAGACCAGTGAAATGAGGTCGCGATCGCTTTTAACACCTCGTAAATTCACAACGAGTGGGTCACTCAATAGACTTAAATCGTATAAAGATTTTCAAAATATAATAACAGATGAGGATAAGACAAACGAGCTATTTGAGAATTTCATTAGGCATCCAGAGTTATTGGTCACAAAAGGCGAAACATTTGAAGAATTTGTCAATACAATATTATTTAGGTATAATTCAAAGAAATTCAAAGAATCTCTGTCAATACAAAATCCAGCACAACTCTTTATTGAGCAAATATTATTTTCCAACAAACCAATAATTGACTACACTAGCATACATGATAAGATTTTTGGATTGCAAGATATGCCAGGAATCGAAGAACTAGATACAATCATAGGCCGCAAAACATTTGTTGAAAGTTATGTCCAGATTGTAGATGATTTAAGCAACTTAACACTGGATATTAATGATGTCAAGACTATATTCGCCTTCTGTCTCATGAATGATCCACTACTAATTACATCCGCTAATAACATAATAATGTCTGTTAAAGGGCATAGCCAAGAAAGAATAGGACAATCAGCATGCAAAATGCCAGAGGTCAGGAGTCTGAAGCTTATACATTATTCACCAGCAGTTGTTTTGAGAGCCTATGTGAGAGGGCCAACAAATGTGCCAAATGCAGATATAGACGAGCTTGCGAGGGATCTATCTCATCTGGAAGATTTCATACAAAGCACAAAACTCAGAGAGAATATGAGAGAGAGAATAGAAATAAATGAGAAACGGCATTTAGGAAGAGATTTCAAGTTTGAAATCAAAGAATTGACTAGATTTTACCAAGTGTGTTATGATTATATAAAATCTACAGAACATAAAATTAAGGTATTCATATTGCCATACAAAGTTTTCACATCAATTGAATTCTGTGGCGCACTGACAGGGAACTTAATAAATGACAAATTGTGGTATATAACACATTACTTAAAAAATATAGTGTCTACTACACACAAGGCACAAATTTCGTCCTCACCTGAATTGGAATTGCAAATAGCTGATGAAGCACTGAGGCTAATAGCACATTTTGCCGATACTTTCTTGGCACCTGAATCAAGAATTCAATTTCTGAAAAAGGTTATCGAAGAATTCACATACAAAGGGATACCTGTAAAACATTTATATTCCAAAATAAAGAATTCCAAGTTGAGGGTCAAATTCTTAGGGATCCTTTTGTGGTTGGATGACCTAACACAAAATGATTTGGATAAGTTTGATGCAGATAAATCAGACGAAAAGATTATATGGAATAACTGGCAAGTATCAAGAGATATGAACACCGGACCAATAGATTTAATGATAAGTGGCTATTCCAGGCAACTGCGGATCACAGGGGAAGATGATAAATTGATTGCTGCTGAATTGCAAGTCACTAGATTGTCAGAAGATTTGATTTACAGACACGGCCAGGCAATGTTAAATAAACCGCACGGATTGAAGCTTGAAAAGATGCAGCCTGTAACTGAGATGTCTAAACAACTACATTATATCGTTTTCCAGCAGAGGTCAAGAAAGCGGTATTTCTATTCTATATTGCCCACCCAAATAATTGAAGATCATAATTCTAGAATCGAATCATCTAGGTTAAACAGAGATTCAAAATGGGTTCCTGTGTGTCCTGTTGCAGTATCAAAACTCTATCAGCAAGGACGACCTATACTTTCCAAGGTTAAGAATCTGAATATGCAGACTCATTCACTTTCTAGAATACAGGTTAATGTAGATGAATATGCCATTACAAGAAGAGCGCATTTCCAGAAGATGCCTTTCTTTGAAGGACCATCCATCCCTTCTGGTGGCATGGATCTATCAGAGTTAATGAAATCCACATCCTTATTGAGCTTAAATTATGACAATATAAAAAATGCTTCTTTATTGGATATGTCTAGAGTATTCAAGTGCAATGGCAGTGAAAATGACCAAATGGCTTTTGAGTTCCTGTCAGATGAAATTCTAGAGCAAGACGTAGTTGAAGAAATAGAATGCAACCCTATATTTTCTATCAGTTATACAAAAAGAGGAGAATCCAATATGACTTATAAAAATGCTTTCCACAAAGCTTTAATCTCAGAATGTGACAAATTTGAAGAAGCATTCGACTTTCTTGACATGGGGTTTTGCTCGAACGAGAACCTTAGTATTTTAGAGGAAATACATTGGATTATCAGTTATTTGAAGACGAATCAGTGGTCCACAGAACTAGACAATTGTATTCATATGTGTATGTATAGGAATGGGTATGATGCAGAGTATCATAGATTTGATATACCTTCTAAATTCCTCAAAGACCCGATAAACCGAACAGTAAATTGGACAGAGGTTATTGAGTTTATACTATTAATTGAAGATTTCCAAACAAAGATTGAGCCATGGTCGAGTATGAAGTCACATTTCTGTTCAAAAGCACACAGTGTAGCGTTAGAGTGCATGAAAAGCGAGAAAAGATCACTGGCAGAATTTGTAGACAAAAGTAAGAAAACTGGGAAATCCAAGTTTGATTTCTAAGGTATATGCATGTAAAAGTA" } -} \ No newline at end of file +} diff --git a/data_output/community/itps/orov/M/refseq/unreleased/dataset.zip b/data_output/community/itps/orov/M/refseq/unreleased/dataset.zip index 96e8862c0..e4ab17576 100644 Binary files a/data_output/community/itps/orov/M/refseq/unreleased/dataset.zip and b/data_output/community/itps/orov/M/refseq/unreleased/dataset.zip differ diff --git a/data_output/community/itps/orov/M/refseq/unreleased/pathogen.json b/data_output/community/itps/orov/M/refseq/unreleased/pathogen.json index 15fcd8c5c..f62fc80a6 100644 --- a/data_output/community/itps/orov/M/refseq/unreleased/pathogen.json +++ b/data_output/community/itps/orov/M/refseq/unreleased/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/M/refseq", "reference accession": "NC_005775.1", - "reference name": "Oropouche virus, M segment" + "reference name": "Oropouche virus, M segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 31 - }, - { - "begin": 4294, - "end": 4385 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data_output/community/itps/orov/M/refseq/unreleased/tree.json b/data_output/community/itps/orov/M/refseq/unreleased/tree.json index 4cd145e70..63a469a64 100644 --- a/data_output/community/itps/orov/M/refseq/unreleased/tree.json +++ b/data_output/community/itps/orov/M/refseq/unreleased/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -81,7 +81,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 31 + }, + { + "begin": 4294, + "end": 4385 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -10183,4 +10197,4 @@ "M": "MANLIIISMVLGVAYGHPLSTSQIGDRCFAGGNLFKEMNLSVGLGEICVKDDISIVKSTTVFSKNKPALEATTKFYRSFIVKDWSECNPVLDKFGNFMVLSVDDNGHIIPKMYTCRAACDIRLNKDNAEIILSSTKLNHFEIVGTTSTSGWFKNTITNNLEHTCEHVTVNCGQKSVKFHACFRQHRGCIRFFKGTYMPYSMIEAMCVNIELIILTLYIFAAIIFALIITKSYVAYLLLPLFYPVTWFYGKVYKKINSCPNCLLASHPFTSCPKFCICGSRFSCTEALKVHRMGKDCLGYKSLSKARQMCKSKSWSFTAAILTGLILMEFISPIAGERMYKLEELADEFIKLTEQVNILEREMEVLKQSIIVMFAIILVLLLFENMIFNRLFRIFYRSCSMCGLIHYRPGLKIDLTKTNRCGSCICGFDEQQSSGFEYEIFLKDMHVQKESCKFSPRVNHFRNIKALLFALVICATIYTVYADEDCLSKDIKITYQELHNCIGPKIMGDTCVSKSELYSDLFSKNLVTEYDKKYFEPDTVNDQFNKIEFAQDAHRMILLERILYKTECEMLSLKKNSGPYNVAWRTYLKNHNIDLCSRHNYKMICQCINTHSMCNNTDIDYNKEIETYYKSNAAAYRADLNTIMDTLKTAFRGLTKVLIENYIEKDDSDALKALFSNITDSVQDNYQMIGILKFASKLLDINLGRSTRSAHHSIMTNEIPKSNPFTDYSYSNLNIKECMSPESLKCFKKRGSTPHTNHLLCKIDNKYKAFDWPEIETIQKGQKLCLGDSHCNLEFTAITADKIMSLTNCYKESFTAQPADMQAGIKKCSADEIGECTTLEDKTWPIIFCGGKYYYSDSKEHAKDGSINNYCLTNKCSEQRFPIHENWFKKCNWDKTHKEFSTMRQINYNDITSYRKAIESEIGTDLMTHHYKPTKNLPHVVPRYHSIDVQGTESTEGIINGFIQNTIPAISGLGVGYHLNFQSNQLFDIVIFVKKAVYKAQYQKAYTTGPSISINIEHNERCTGHCPEKIPAKEGWLTFSKEHTSSWGCEEYGCLAIDTGCLYGSCQDVIRPELDVYKKIGSEVSLIEICITLPHETYCNDMDILEPIIGDKLSASFQNTQTNQLPTLIAYKKGKIYTGQINDIGNTALQCGSIQVINGSTIGTGSPKFDYICHAMRRKDVIVRKCFNDNYQSCTRLEKRNDLIPYRKGDVIEVSKTGSNMGQMTFKIELGDINYKIFTKSIDLQMSGICAGCIDCAEGISCSINAEVPAETVCHCKTNCEDFINNIVFSPQIKNYNIKVHCKSKVEKITAHICGRDIDLQLTIKPYNQKIDLSQLDESNYIREEDLQCGTWLCKVQKEGIDIIFKGLFSGLGRYWTILIYSIIGVVIIVILVYILLPIGRLLKAFLIRHEIEYAMEQKIK*", "nuc": "AGTAGTGTGCTACCGGCAACAAACAGTGACAATGGCGAATTTAATAATTATTTCAATGGTTCTGGGCGTTGCCTATGGGCATCCGCTTTCAACAAGTCAAATTGGTGACCGCTGTTTTGCTGGTGGTAACCTCTTCAAGGAGATGAACTTGAGTGTAGGACTTGGCGAAATATGTGTTAAAGATGACATATCTATTGTTAAGAGTACTACTGTTTTTAGCAAGAATAAACCAGCTCTTGAGGCAACTACAAAATTTTATAGATCTTTTATTGTGAAAGATTGGTCTGAGTGCAATCCAGTGCTAGACAAATTTGGAAATTTTATGGTTTTAAGTGTTGATGATAATGGCCATATAATACCTAAAATGTATACATGTAGAGCAGCATGTGATATTAGATTAAACAAAGATAATGCCGAAATAATATTATCGTCAACAAAACTCAACCACTTTGAAATTGTCGGGACAACTTCGACATCAGGCTGGTTCAAGAACACAATAACAAACAACTTAGAACATACATGCGAGCATGTAACCGTAAATTGTGGTCAGAAATCAGTAAAATTCCATGCATGCTTTAGACAACATAGGGGTTGTATAAGATTCTTTAAAGGAACATATATGCCATACTCAATGATTGAAGCAATGTGCGTTAACATAGAGCTAATAATTCTGACATTATATATCTTTGCTGCAATTATATTTGCATTAATTATAACAAAGAGTTATGTGGCATACTTGCTCCTGCCGTTATTTTATCCAGTGACGTGGTTTTACGGAAAGGTTTATAAAAAGATTAATTCTTGCCCAAATTGTCTACTTGCATCTCACCCTTTCACCAGCTGCCCTAAATTCTGTATATGCGGTTCTAGGTTTAGTTGCACAGAAGCTCTTAAGGTACATAGAATGGGAAAGGACTGCTTAGGTTATAAGTCTCTAAGCAAAGCTAGACAGATGTGTAAATCGAAAAGCTGGTCCTTCACAGCAGCTATATTAACTGGATTAATATTGATGGAATTCATCTCACCAATTGCAGGAGAGAGAATGTATAAGCTTGAGGAGCTGGCTGATGAGTTTATAAAGCTAACAGAGCAGGTAAATATTTTAGAAAGAGAAATGGAAGTCTTGAAGCAGTCAATAATTGTTATGTTTGCAATCATTTTGGTATTGTTGCTTTTTGAAAATATGATATTCAACCGGCTTTTCCGCATTTTTTATCGTTCTTGCTCCATGTGCGGCTTGATACATTATAGACCAGGACTCAAGATCGATTTAACCAAAACTAACAGATGTGGTAGTTGCATCTGTGGATTCGACGAGCAGCAATCATCTGGTTTTGAATATGAAATATTTCTAAAGGATATGCATGTCCAGAAAGAATCATGCAAATTTAGTCCAAGAGTAAACCACTTTAGGAATATTAAAGCTTTATTATTTGCACTTGTAATCTGTGCTACTATATATACAGTTTATGCAGATGAAGATTGCTTATCTAAAGATATTAAAATAACATATCAAGAGTTGCACAATTGCATAGGTCCAAAGATAATGGGCGATACTTGTGTATCAAAGAGTGAATTGTATTCTGATTTATTCTCAAAAAATCTAGTCACAGAATATGATAAAAAATATTTTGAACCCGATACTGTAAATGATCAATTCAACAAGATAGAGTTTGCCCAAGATGCACATAGAATGATACTATTAGAAAGAATACTTTACAAGACAGAATGTGAAATGCTAAGCTTAAAAAAGAACAGTGGACCTTATAATGTTGCCTGGCGCACATATTTAAAAAATCATAATATAGACTTATGCAGTAGGCACAACTATAAAATGATATGTCAGTGTATTAATACACACTCTATGTGTAATAATACAGATATAGATTATAACAAAGAGATCGAAACATATTATAAAAGCAATGCTGCAGCCTATAGAGCTGACCTGAACACCATAATGGACACATTAAAAACAGCATTCAGAGGGCTTACAAAGGTCCTAATTGAAAATTATATAGAAAAAGATGACTCTGATGCTCTTAAGGCCTTATTTAGTAATATTACTGATTCTGTTCAGGACAATTATCAGATGATTGGAATATTGAAATTTGCCAGTAAGCTATTAGATATTAACCTTGGTAGATCCACCCGCTCAGCTCATCATTCTATAATGACAAACGAAATTCCCAAATCTAATCCTTTTACTGATTACAGTTATTCTAATCTGAATATAAAGGAGTGCATGTCACCAGAGAGCTTGAAATGTTTTAAGAAGAGAGGCAGTACACCGCATACAAACCACCTGCTTTGCAAGATAGACAACAAATATAAAGCATTTGACTGGCCAGAGATAGAAACAATTCAAAAAGGTCAAAAATTGTGCCTTGGTGACAGTCATTGCAACTTGGAATTTACAGCCATAACTGCAGACAAGATTATGTCATTAACTAACTGTTATAAAGAATCTTTCACTGCGCAACCAGCAGATATGCAGGCTGGAATTAAAAAATGCTCAGCTGATGAAATTGGAGAATGTACAACACTTGAAGACAAGACATGGCCAATTATATTCTGTGGTGGCAAATATTACTACTCTGATAGCAAGGAGCATGCCAAGGACGGTTCTATCAACAATTATTGTTTAACCAACAAATGCTCTGAACAACGTTTCCCAATACATGAAAATTGGTTCAAAAAATGTAATTGGGACAAGACCCACAAAGAATTTAGCACTATGAGACAAATAAACTATAATGATATAACTTCTTATAGAAAGGCAATAGAATCTGAGATAGGAACAGATTTGATGACACACCATTATAAGCCCACAAAGAACCTTCCACATGTTGTACCAAGGTATCATAGTATAGATGTACAAGGTACAGAATCAACAGAGGGTATTATCAATGGTTTCATACAAAATACAATACCTGCTATTAGTGGTCTAGGTGTCGGTTATCATCTGAATTTTCAAAGCAATCAGTTATTTGACATAGTTATTTTTGTGAAAAAAGCTGTATATAAAGCACAGTACCAGAAAGCATACACCACAGGTCCTAGCATATCCATAAATATTGAACACAACGAAAGATGCACAGGCCACTGCCCCGAAAAGATTCCTGCAAAAGAAGGTTGGTTAACATTTTCTAAAGAGCATACTAGTTCTTGGGGATGTGAAGAATATGGCTGTCTTGCTATAGATACAGGCTGTCTATATGGCTCTTGTCAAGATGTCATACGCCCAGAATTAGATGTTTATAAGAAGATTGGCAGTGAGGTATCACTGATAGAAATATGTATAACTTTGCCTCATGAAACTTATTGCAATGATATGGACATATTAGAACCGATTATAGGAGATAAATTAAGTGCATCCTTTCAGAATACACAGACTAATCAACTTCCGACCCTTATAGCTTATAAAAAAGGGAAGATATACACAGGTCAAATCAACGATATTGGAAACACAGCATTGCAGTGCGGCTCAATCCAAGTAATCAATGGATCAACTATCGGAACTGGCAGCCCCAAATTTGATTATATATGCCATGCTATGAGAAGGAAAGATGTTATTGTAAGGAAGTGTTTCAATGACAATTATCAGTCGTGCACTAGGCTAGAAAAACGGAACGACTTGATCCCTTATAGAAAAGGCGATGTCATCGAAGTATCAAAAACAGGATCGAACATGGGCCAAATGACATTTAAAATAGAACTAGGTGATATCAACTATAAAATATTTACTAAATCAATAGATCTTCAAATGTCTGGCATTTGTGCTGGGTGCATTGACTGTGCTGAAGGCATTTCATGCTCTATAAATGCTGAAGTGCCAGCCGAAACAGTCTGCCATTGCAAAACAAACTGTGAAGATTTTATAAACAATATAGTGTTTTCACCGCAAATCAAGAATTACAATATAAAAGTCCACTGTAAATCTAAAGTTGAAAAAATAACAGCACATATCTGTGGGAGAGACATTGATTTACAGTTAACAATTAAGCCATACAATCAGAAGATAGACTTGTCGCAGTTAGATGAATCAAATTACATAAGGGAAGAGGACCTCCAGTGTGGAACATGGTTATGTAAAGTGCAAAAAGAGGGGATTGATATTATATTTAAAGGATTATTTTCAGGCTTAGGGAGATATTGGACCATATTAATTTATTCAATTATAGGTGTGGTAATAATTGTGATATTGGTTTATATCCTGTTGCCCATAGGTCGGCTTTTAAAAGCATTCCTAATCAGACATGAAATAGAATATGCCATGGAGCAGAAAATCAAGTAGATTTGGCTAAAAAGGGTAGGCAGGTCTAAAATCAGGTATAAATAAAATTCATATAAATAAAGTCAAAAATTGTTGTCGGTAGCACACTACT" } -} \ No newline at end of file +} diff --git a/data_output/community/itps/orov/M/tefe/unreleased/dataset.zip b/data_output/community/itps/orov/M/tefe/unreleased/dataset.zip index eeb10a2bf..12f66801c 100644 Binary files a/data_output/community/itps/orov/M/tefe/unreleased/dataset.zip and b/data_output/community/itps/orov/M/tefe/unreleased/dataset.zip differ diff --git a/data_output/community/itps/orov/M/tefe/unreleased/pathogen.json b/data_output/community/itps/orov/M/tefe/unreleased/pathogen.json index d585ec4dd..b9a486007 100644 --- a/data_output/community/itps/orov/M/tefe/unreleased/pathogen.json +++ b/data_output/community/itps/orov/M/tefe/unreleased/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/M/tefe", "reference accession": "PP154171.1", - "reference name": "Oropouche virus ILMD_TF29 (tefe), M segment" + "reference name": "Oropouche virus ILMD_TF29 (tefe), M segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 20 - }, - { - "begin": 4283, - "end": 4371 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data_output/community/itps/orov/M/tefe/unreleased/tree.json b/data_output/community/itps/orov/M/tefe/unreleased/tree.json index ed3bece58..d11421f61 100644 --- a/data_output/community/itps/orov/M/tefe/unreleased/tree.json +++ b/data_output/community/itps/orov/M/tefe/unreleased/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -85,7 +85,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 20 + }, + { + "begin": 4283, + "end": 4371 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -10417,4 +10431,4 @@ "M": "MANLIIISMVLSVAYGHPLSTSQIGDRCFAGGNLFKEMNLSVGLGEICVKDDISIVKSTTVFSKNRPALEATTKFYRSFIVKDWSECNPVLDKFGNFMVLSVDDNGHIIPKMYTCRAACDIRLNKDNAEIILSSTKLNHFEIVGTTSTSGWFKNTITNNLEHTCEHVTVNCGQKSVKFHACFRQHRGCIRFFKGTYMPYSMIEAMCVNIELIILTLYIFAAIIFALIITKSYVAYLLLPLFYPVTWFYGKVYKKINSCPNCLLASHPFTSCPKICICGSRFSCTEALKVHRMGKDCLGYKSLSKARQMCKSKSWSFTAAILTGLILMEFISPIAGERMYKLEELADEFIKLTEQVNILEREMEVLKQSIIVMFAIILVLLLFENMIFNRLFSTFYRSCSMCGLIHYRPGLKVDLTKTNRCGSCICGFNEQQSSGFEYEIFLKDMHIQKESCKFSPRVNHFRNIKALLFALVICATIYTVYADEDCLSKDIKITYQELHNCIGPKIMGDTCVSKNELYSDLFSKNLVTEYDKKYFEPDTVNDQFNKIEFAQDAHRMILLERILYKTECEMLSLKKNSGPYNVAWRTYLKNHNIDLCSRHNYKMICQCINTHSMCKNTDIDYNKEIETYYKSNTAAYRADLNTIMDTLKTAFRGLTKVLIENYIEKDDSDALKALFSNITDSVQDNYQMIGILKFASKLLDINLGRSTRSARHSIMTNEIPKSNPFTDYSYSNVNIKECMSPESLKCFKKRDSTPHTNHLLCKIDSKYKAFDWPEIETIQKGQKLCLGDSHCNLEFTAITADKVMSLTNCYKESFTAQPADMQTGIKKCSADEIGECTTLEDKTWPIVFCGGKYYYSDSKEHAKDGSINNYCLTNKCSEQRFPIHENWFKKCNWDKTHKEFSTMRQINYNDITSYRKAIESEIGTDLMTHHYKPTKNLPHVVPRYHSIDVQGTESTEGIINGFIQNTIPAISGLGVGYHLNFKGNQLFDIVIFVKKAVYKAQYQKAYTTGPSISINIEHNERCTGHCPEKIPAKEGWLTFSKEHTSSWGCEEYGCLAIDTGCLYGSCQDVIRPELDVYKKIGSEASLIEICITLPHETYCNDMDILEPIIGDKLSASFQNTQTNQLPTLIAYKKGKIYTGQINDIGNTALQCGSIQVINGSTIGTGSPKFDYICHAMRRKDVIVRKCFNDNYQSCTRLEKRNDLIPYRKGDVIEVSKTGSNMGQMTFKIELGDINYKIFTKSIDLQMSGICAGCIDCAEGISCSINAEVSAETVCRCKTNCEDFINNIVFSPQIKNYNIKVHCKSKVEKIIAHICGRDIDLQLTVKPYNQKIDLSQLDESNYIREEDLQCGTWLCKVQKEGVDIIFKGLFSGLGRYWTILIYSIIGVVIIVILVYILLPIGRLLKAFLIRHEIEYAMEQKIK*", "nuc": "ACCAGCAACAAACAGTGACAATGGCGAATTTAATAATTATTTCAATGGTTCTGAGCGTTGCCTACGGGCATCCTCTTTCAACAAGTCAAATTGGTGACCGCTGTTTCGCTGGTGGTAACCTCTTCAAGGAGATGAACTTGAGTGTAGGACTTGGCGAAATATGTGTTAAAGATGACATATCTATTGTTAAAAGTACTACTGTTTTTAGTAAGAATAGACCAGCTCTTGAGGCAACCACAAAATTTTATAGATCTTTTATTGTGAAAGATTGGTCTGAATGCAATCCAGTGCTAGATAAATTTGGAAATTTTATGGTTTTAAGTGTTGATGATAATGGCCATATAATACCTAAAATGTACACATGTAGAGCAGCATGTGATATTAGATTAAACAAAGATAATGCTGAAATAATATTATCGTCAACAAAGCTCAACCACTTCGAAATTGTCGGAACAACTTCGACATCAGGCTGGTTCAAAAACACAATAACAAACAATTTGGAACACACATGCGAACATGTGACCGTAAATTGTGGTCAGAAATCAGTAAAATTCCATGCATGCTTTAGACAACATAGGGGTTGTATAAGATTCTTTAAAGGGACATATATGCCATACTCAATGATTGAAGCAATGTGTGTTAACATAGAGCTAATAATTCTGACATTATATATCTTTGCTGCAATTATATTTGCATTAATCATAACAAAGAGTTATGTGGCATACCTGCTCCTGCCGTTATTTTATCCAGTGACATGGTTTTACGGAAAGGTTTATAAAAAGATTAATTCCTGCCCAAATTGTCTACTTGCATCTCATCCTTTCACCAGCTGCCCTAAAATCTGTATATGCGGTTCTAGATTTAGTTGCACAGAAGCTCTTAAGGTGCATAGAATGGGTAAGGACTGTTTAGGTTATAAATCTCTAAGCAAAGCTAGACAGATGTGTAAATCGAAAAGCTGGTCCTTTACAGCAGCTATATTAACTGGATTAATATTGATGGAATTTATCTCACCAATTGCAGGAGAGAGAATGTATAAGCTTGAGGAGTTAGCTGATGAGTTTATAAAGCTAACAGAGCAGGTAAATATTTTAGAAAGAGAAATGGAAGTCTTGAAGCAATCAATAATTGTTATGTTTGCAATCATTTTGGTATTGTTGCTTTTTGAAAATATGATATTCAACCGACTTTTCAGCACTTTTTATCGTTCTTGCTCCATGTGTGGTTTGATACATTATAGACCAGGACTCAAGGTTGATTTAACCAAAACTAATAGATGCGGTAGTTGCATCTGTGGATTCAATGAGCAGCAATCATCTGGTTTTGAATATGAAATATTTCTAAAGGATATGCACATCCAGAAAGAATCATGCAAATTTAGTCCAAGAGTAAACCACTTTAGGAATATTAAAGCTTTATTATTTGCACTTGTAATCTGTGCTACTATATATACAGTTTATGCAGATGAAGATTGCTTGTCTAAAGACATTAAAATAACATATCAAGAGTTGCATAATTGCATAGGCCCAAAGATAATGGGCGACACTTGTGTATCAAAGAATGAATTGTATTCTGATTTATTCTCAAAAAATCTAGTCACAGAATATGATAAAAAATATTTTGAACCTGATACTGTAAATGATCAATTCAACAAAATAGAGTTTGCCCAAGATGCACATAGAATGATACTATTAGAAAGAATACTTTACAAGACAGAATGTGAAATGCTAAGCTTAAAAAAGAACAGTGGACCTTATAATGTTGCCTGGCGCACATATTTAAAAAATCATAATATAGACCTATGCAGTAGGCACAACTATAAAATGATATGTCAGTGTATTAATACGCACTCTATGTGTAAAAATACAGATATAGATTACAACAAAGAGATCGAAACATATTATAAAAGCAATACTGCAGCCTATAGAGCTGACCTGAACACCATAATGGACACATTAAAAACGGCATTCAGAGGGCTTACAAAGGTCCTAATTGAAAATTATATAGAAAAAGATGACTCTGATGCTCTTAAGGCTTTATTCAGTAATATTACTGATTCTGTCCAGGACAATTATCAGATGATTGGAATATTGAAATTTGCCAGTAAGCTATTAGATATTAACCTTGGTAGATCCACCCGCTCAGCTCGTCATTCTATAATGACAAACGAAATTCCCAAATCTAATCCTTTTACTGATTACAGTTATTCCAATGTGAACATAAAGGAGTGCATGTCACCAGAGAGCTTGAAATGTTTTAAGAAGAGAGACAGTACACCGCATACAAACCACCTGCTTTGCAAGATAGACAGCAAATATAAAGCATTTGACTGGCCAGAGATAGAAACAATTCAAAAAGGTCAAAAATTGTGTCTTGGTGACAGTCATTGCAACTTGGAATTTACAGCCATAACTGCAGATAAGGTTATGTCATTAACTAACTGTTATAAGGAATCTTTCACTGCGCAACCAGCAGATATGCAGACTGGAATTAAAAAATGCTCAGCTGATGAAATTGGAGAATGTACAACACTTGAAGACAAGACATGGCCGATCGTATTCTGTGGTGGCAAATATTACTACTCTGATAGCAAAGAGCATGCCAAGGACGGTTCTATCAACAACTATTGTTTAACCAACAAATGCTCTGAACAACGTTTTCCAATACATGAAAATTGGTTTAAAAAATGTAATTGGGACAAAACCCACAAAGAATTTAGTACTATGAGACAGATAAACTATAATGATATAACTTCTTATAGAAAAGCAATAGAATCTGAGATAGGAACAGATTTGATGACACACCATTATAAGCCCACAAAGAACCTTCCGCATGTTGTGCCAAGGTATCATAGTATAGATGTACAAGGTACAGAATCAACAGAGGGTATTATCAATGGTTTCATACAAAATACAATACCTGCTATTAGTGGTCTAGGTGTCGGTTATCATCTGAATTTCAAAGGCAATCAGTTATTTGACATAGTTATTTTTGTGAAAAAGGCTGTATATAAAGCACAGTACCAGAAAGCATACACCACAGGTCCCAGTATATCCATAAATATTGAACACAATGAAAGATGCACAGGCCACTGCCCCGAAAAGATTCCTGCAAAAGAAGGTTGGCTAACATTTTCTAAAGAACATACTAGTTCTTGGGGATGTGAAGAATACGGCTGTCTTGCTATAGATACAGGCTGTCTATATGGTTCTTGTCAAGATGTCATACGCCCAGAATTAGATGTTTATAAGAAGATTGGTAGTGAAGCATCACTGATAGAAATATGCATAACTTTGCCTCATGAAACTTATTGCAATGATATGGATATATTAGAACCGATTATAGGTGATAAATTAAGTGCATCCTTTCAGAATACGCAGACTAACCAACTTCCGACCCTTATAGCTTATAAAAAAGGGAAAATATACACAGGTCAAATCAATGATATTGGAAATACAGCATTGCAGTGCGGCTCGATCCAAGTAATTAATGGGTCAACTATCGGAACTGGCAGCCCCAAATTCGATTATATATGCCATGCTATGAGAAGGAAAGATGTTATTGTAAGGAAGTGTTTCAATGACAATTATCAGTCATGCACTAGGTTAGAAAAACGAAATGACTTGATCCCTTATAGAAAAGGCGATGTCATTGAAGTATCAAAAACAGGATCAAACATGGGCCAAATGACATTTAAAATAGAACTAGGTGATATCAACTATAAAATATTCACTAAATCAATAGATCTTCAAATGTCTGGCATTTGTGCTGGGTGCATTGACTGTGCTGAAGGTATTTCATGCTCTATAAATGCTGAAGTGTCGGCCGAAACAGTCTGCCGTTGTAAAACAAACTGTGAAGATTTTATAAATAATATAGTGTTTTCACCACAAATCAAGAATTACAATATTAAAGTCCACTGTAAATCTAAAGTTGAAAAGATAATAGCACATATCTGTGGGAGAGACATCGATTTACAATTAACTGTTAAACCATACAATCAGAAGATAGATTTGTCGCAGTTAGATGAATCAAATTATATAAGGGAAGAGGATCTCCAGTGCGGGACATGGTTATGTAAAGTGCAAAAAGAGGGGGTTGATATTATATTCAAAGGATTATTTTCAGGCTTAGGGAGATACTGGACCATATTGATTTATTCAATTATAGGTGTGGTAATAATTGTGATATTAGTTTATATCCTGTTGCCCATAGGTCGGCTTTTAAAAGCATTCCTAATCAGACATGAAATAGAATATGCCATGGAGCAAAAAATCAAGTAGATTTAGCTAAAAAGGGTAGGCAGGCCTAAGATCAGGTATAAATAAAATCCATATAAATAAAGTCAAAAATTGTTGTTGGTAGCACACT" } -} \ No newline at end of file +} diff --git a/data_output/community/itps/orov/S/refseq/unreleased/dataset.zip b/data_output/community/itps/orov/S/refseq/unreleased/dataset.zip index 9abd647bd..2a292a58d 100644 Binary files a/data_output/community/itps/orov/S/refseq/unreleased/dataset.zip and b/data_output/community/itps/orov/S/refseq/unreleased/dataset.zip differ diff --git a/data_output/community/itps/orov/S/refseq/unreleased/pathogen.json b/data_output/community/itps/orov/S/refseq/unreleased/pathogen.json index cdc00123c..1509eed91 100644 --- a/data_output/community/itps/orov/S/refseq/unreleased/pathogen.json +++ b/data_output/community/itps/orov/S/refseq/unreleased/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/S/refseq", "reference accession": "NC_005777.1", - "reference name": "Oropouche virus, S segment" + "reference name": "Oropouche virus, S segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 44 - }, - { - "begin": 740, - "end": 754 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data_output/community/itps/orov/S/refseq/unreleased/tree.json b/data_output/community/itps/orov/S/refseq/unreleased/tree.json index cff18d293..48a901322 100644 --- a/data_output/community/itps/orov/S/refseq/unreleased/tree.json +++ b/data_output/community/itps/orov/S/refseq/unreleased/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -76,7 +76,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 44 + }, + { + "begin": 740, + "end": 754 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -3770,4 +3784,4 @@ "NSs": "MYHNGLHLHLIRRQHMWHLKLDTDKCSMLVLLESSSSTKRRPKMSYVRHRGPWLTLLLVGSNLQWLITISHSSSRIQCRTTVLPCTVCQDT*", "nuc": "AGTAGTGTGCTCCACAATTCAAAACATAAAAAGAAATTCCAATAATGTCAGAGTTCATTTTCAACGATGTACCACAACGGACTACATCTACATTTGATCCGGAGGCAGCATATGTGGCATTTGAAGCTAGATACGGACAAGTGCTCAATGCTGGTGTTGTTAGAGTCTTCTTCCTCAACCAAAAGAAGGCCAAAGATGTCTTACGTAAGACATCGAGGCCCATGGTTGACCTTACTTTTGGTGGGGTCCAATTTGCAATGGTTAATAACCATTTCCCACAGTTCCAGTCGAATCCAGTGCCGGACAACGGTCTTACCCTGCACCGTCTGTCAGGATACCTAGCGCGCTGGGCCTTTACCCAGATGCGATCACCAATTAAGCAAGCTGAGTTCAGAGCCACTGTAGTAGTGCCTTTGGCTGAGGTAAAGGGCTGTACTTGGAATGATGGTGACGCAATGTACCTGGGGTTTGCTGCTGGTGCTGAGATGTTCCTGCAAACATTCACTTTCTTCCCTTTGGTGATTGAGATGCATAGGGTTCTCAAGGATGGCATGGATGTCAACTTTATGAAGAAAGTCCTCCGGCAGAGGTATGGTCAAAAGACTGCCGAGCAATGGATGCGTGAAGAAATAGTTGCTGTAAGAGCAGCTTTTGAAGCTGTAGGCACTCTGGCCTGGGCCAGAACTGGATTCTCCCCAGCAGCAAGAGACTTCTTGCGCCAATTCGGAATTGACATATAGTGGAGCACACTACT" } -} \ No newline at end of file +} diff --git a/data_output/community/itps/orov/S/tefe/unreleased/dataset.zip b/data_output/community/itps/orov/S/tefe/unreleased/dataset.zip index 499b65b9d..b96c6dbe4 100644 Binary files a/data_output/community/itps/orov/S/tefe/unreleased/dataset.zip and b/data_output/community/itps/orov/S/tefe/unreleased/dataset.zip differ diff --git a/data_output/community/itps/orov/S/tefe/unreleased/pathogen.json b/data_output/community/itps/orov/S/tefe/unreleased/pathogen.json index 11904be9b..6621cd096 100644 --- a/data_output/community/itps/orov/S/tefe/unreleased/pathogen.json +++ b/data_output/community/itps/orov/S/tefe/unreleased/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/S/tefe", "reference accession": "PP154170.1", - "reference name": "Oropouche virus ILMD_TF29 (tefe), S segment" + "reference name": "Oropouche virus ILMD_TF29 (tefe), S segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 43 - }, - { - "begin": 739, - "end": 944 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data_output/community/itps/orov/S/tefe/unreleased/tree.json b/data_output/community/itps/orov/S/tefe/unreleased/tree.json index 88f12f2c5..3936b5632 100644 --- a/data_output/community/itps/orov/S/tefe/unreleased/tree.json +++ b/data_output/community/itps/orov/S/tefe/unreleased/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -92,7 +92,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 43 + }, + { + "begin": 739, + "end": 944 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -5869,4 +5883,4 @@ "NSs": "MYHNGLHLHLIRRQHMWHLKLDTDKCSMLVLLESSSSTKRRPKMSYVRHRGPWLTLLLVGSNLQWLITISHNSSRIQCRTTVLPCTVCQDT*", "nuc": "GTAGTGTACTCCACAATTCAAAACATAAAAAGAAATTCCAATAATGTCAGAGTTCATTTTCAACGATGTACCACAACGGACTACATCTACATTTGATCCGGAGGCAGCATATGTGGCATTTGAAGCTAGATACGGACAAGTGCTCAATGCTGGTGTTGTTAGAGTCTTCTTCCTCAACCAAAAGAAGGCCAAAGATGTCTTACGTAAGACATCGCGGCCCATGGTTGACCTTACTTTTGGTGGGGTCCAATTTGCAATGGTTAATAACCATTTCCCACAATTCCAGTCGAATCCAGTGCCGGACAACGGTCTTACCCTGCACCGTCTGTCAGGATACCTAGCTCGCTGGGCCTTCACCCAGATGCGATCACCTATTAAGCAAGCTGAGTTTAGGGCCACTGTGGTGGTGCCTTTGGCAGAGGTGAAGGGTTGTACTTGGAATGATGGTGACGCAATGTACCTGGGGTTTGCTGCCGGTGCTGAGATGTTTCTGCAAACATTTACTTTCTTCCCTCTGGTGATTGAGATGCATAGGGTCCTCAAGGACGGCATGGATGTCAACTTCATGAAGAAAGTCCTTCGGCAGAGGTATGGCCAGAAGACTGCTGAACAGTGGATGCGTGAAGAAATAGTTGCTGTAAGAGCAGCTTTTGAGGCTGTAGGCACTTTGGCCTGGGCCAGGACTGGATTCTCCCCAGCAGCAAGAGACTTCTTGCGCCAATTTGGAATTGACATATAGTGGAGTACAATAAACAAACAGAGTATAATATAAAATACAAAAAAAGAAATAAAATAACAAAAATACAAAAAAACTAAAAAATATATAAAATAAACAAAAAAAGTGCGAAAGCACAAAAAAGAACTGCAGCTGTAATATTATAAAGGGTTGGGTGGTTGGGGAAAGCTATGTCATTTTAGAAAACGTATTTTTGAATTGGGAGCAC" } -} \ No newline at end of file +} diff --git a/data_output/index.json b/data_output/index.json index 304808e62..1224b88eb 100644 --- a/data_output/index.json +++ b/data_output/index.json @@ -2947,7 +2947,8 @@ "attributes": { "name": "Andesvirus (segment L)", "reference name": "Chile-9717869", - "reference accession": "NC_003468" + "reference accession": "NC_003468", + "experimental": true }, "files": { "reference": "reference.fasta", @@ -2972,6 +2973,9 @@ ] }, "versions": [ + { + "tag": "unreleased" + }, { "updatedAt": "2026-05-11T18:59:50Z", "tag": "2026-05-11--18-59-50Z" @@ -2982,8 +2986,7 @@ } ], "version": { - "updatedAt": "2026-05-11T18:59:50Z", - "tag": "2026-05-11--18-59-50Z" + "tag": "unreleased" } }, { @@ -2991,7 +2994,8 @@ "attributes": { "name": "Andesvirus (segment M)", "reference name": "Chile-9717869", - "reference accession": "NC_003467" + "reference accession": "NC_003467", + "experimental": true }, "files": { "reference": "reference.fasta", @@ -3016,6 +3020,9 @@ ] }, "versions": [ + { + "tag": "unreleased" + }, { "updatedAt": "2026-05-11T18:59:50Z", "tag": "2026-05-11--18-59-50Z" @@ -3026,8 +3033,7 @@ } ], "version": { - "updatedAt": "2026-05-11T18:59:50Z", - "tag": "2026-05-11--18-59-50Z" + "tag": "unreleased" } }, { @@ -3035,7 +3041,8 @@ "attributes": { "name": "Andesvirus (segment S)", "reference name": "Chile-9717869", - "reference accession": "NC_003466" + "reference accession": "NC_003466", + "experimental": true }, "files": { "reference": "reference.fasta", @@ -3060,6 +3067,9 @@ ] }, "versions": [ + { + "tag": "unreleased" + }, { "updatedAt": "2026-05-11T18:59:50Z", "tag": "2026-05-11--18-59-50Z" @@ -3070,8 +3080,7 @@ } ], "version": { - "updatedAt": "2026-05-11T18:59:50Z", - "tag": "2026-05-11--18-59-50Z" + "tag": "unreleased" } }, { @@ -8846,7 +8855,8 @@ "attributes": { "name": "orov/L/refseq", "reference accession": "NC_005776.1", - "reference name": "Oropouche virus, L segment" + "reference name": "Oropouche virus, L segment", + "experimental": true }, "files": { "changelog": "CHANGELOG.md", @@ -8888,7 +8898,8 @@ "attributes": { "name": "orov/M/refseq", "reference accession": "NC_005775.1", - "reference name": "Oropouche virus, M segment" + "reference name": "Oropouche virus, M segment", + "experimental": true }, "files": { "changelog": "CHANGELOG.md", @@ -8930,7 +8941,8 @@ "attributes": { "name": "orov/M/tefe", "reference accession": "PP154171.1", - "reference name": "Oropouche virus ILMD_TF29 (tefe), M segment" + "reference name": "Oropouche virus ILMD_TF29 (tefe), M segment", + "experimental": true }, "files": { "changelog": "CHANGELOG.md", @@ -8972,7 +8984,8 @@ "attributes": { "name": "orov/L/tefe", "reference accession": "PP154172.1", - "reference name": "Oropouche virus ILMD_TF29 (tefe), L segment" + "reference name": "Oropouche virus ILMD_TF29 (tefe), L segment", + "experimental": true }, "files": { "changelog": "CHANGELOG.md", @@ -9014,7 +9027,8 @@ "attributes": { "name": "orov/S/tefe", "reference accession": "PP154170.1", - "reference name": "Oropouche virus ILMD_TF29 (tefe), S segment" + "reference name": "Oropouche virus ILMD_TF29 (tefe), S segment", + "experimental": true }, "files": { "changelog": "CHANGELOG.md", @@ -9056,7 +9070,8 @@ "attributes": { "name": "orov/S/refseq", "reference accession": "NC_005777.1", - "reference name": "Oropouche virus, S segment" + "reference name": "Oropouche virus, S segment", + "experimental": true }, "files": { "changelog": "CHANGELOG.md", diff --git a/data_output/nextstrain/orthohantavirus/andv/l/unreleased/CHANGELOG.md b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/CHANGELOG.md new file mode 100644 index 000000000..894bac942 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/CHANGELOG.md @@ -0,0 +1,16 @@ +## Unreleased + +- update outbreak name to 2026-Hondius +- make nucleotide default sequence view. +- add GPC amino acid substitutions + + +## 2026-05-11T18:59:50Z + +- Updating Nextclade dataset with the latest sequences and metadata from Pathoplexus +- Include 2026 outbreak sequences +- add 2026 outbreak annotation + +## 2026-05-08T21:17:05Z + + - initial release diff --git a/data_output/nextstrain/orthohantavirus/andv/l/unreleased/README.md b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/README.md new file mode 100644 index 000000000..cf68bab91 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/README.md @@ -0,0 +1,18 @@ +# Andesvirus segment L dataset + +| Key | Value | +| :-- | :-- | +| name | Andes virus segment L Tree | +| authors | [Nextstrain](https://nextstrain.org) | +| reference | [NC_003468](www.ncbi.nlm.nih.gov/nuccore/NC_003468) | +| workflow | https://github.com/nextstrain/andv/tree/main/nextclade | +| path | `nextstrain/orthohantavirus/andv/l` | + + +This dataset aligns sequences to the RefSeq entry [NC_003468](www.ncbi.nlm.nih.gov/nuccore/NC_003468) and places the sequences onto a tree build using sequences from INSDC and Pathoplexus. +Sequences from the 2026 outbreak were rapidly shared by several laboratories around the world to facilitate outbreak investigations. These data have been released under RESTRICTED USE terms on Pathoplexus. +We refer to the [summary of the initial investigations by this collaboration on virological.org](https://virological.org/t/preliminary-analysis-of-orthohantavirus-andesense-virus-sequences-from-a-cruise-ship-related-cluster-may-2026/1029) for further details. + +## What are Nextclade datasets + +Read more about Nextclade datasets in the Nextclade documentation: https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html diff --git a/data_output/nextstrain/orthohantavirus/andv/l/unreleased/dataset.zip b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/dataset.zip new file mode 100644 index 000000000..13d3eb2ad Binary files /dev/null and b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/dataset.zip differ diff --git a/data_output/nextstrain/orthohantavirus/andv/l/unreleased/genome_annotation.gff3 b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/genome_annotation.gff3 new file mode 100644 index 000000000..2671f7985 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/genome_annotation.gff3 @@ -0,0 +1,7 @@ +##gff-version 3 +#!gff-spec-version 1.21 +#!processor NCBI annotwriter +##sequence-region NC_003468.2 1 6562 +##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1980456 +NC_003468.2 RefSeq region 1 6562 . + . ID=NC_003468.2:1..6562;Dbxref=taxon:1980456;Name=L;gbkey=Src;genome=genomic;mol_type=genomic RNA;old-name=Andes virus;segment=L;strain=Chile-9717869 +NC_003468.2 RefSeq CDS 36 6497 . + 0 Name=RdRp;gbkey=CDS;locus_tag=ANDVsLgp1;protein_id=NP_604473.1;product=RNA polymerase;ID=cds-NP_604473.1;Dbxref=GenBank:NP_604473.1,GeneID:991234 diff --git a/data_output/nextstrain/orthohantavirus/andv/l/unreleased/pathogen.json b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/pathogen.json new file mode 100644 index 000000000..ab8561e56 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/pathogen.json @@ -0,0 +1,65 @@ +{ + "$schema": "https://raw.githubusercontent.com/nextstrain/nextclade/refs/heads/release/packages/nextclade-schemas/input-pathogen-json.schema.json", + "files": { + "reference": "reference.fasta", + "pathogenJson": "pathogen.json", + "genomeAnnotation": "genome_annotation.gff3", + "treeJson": "tree.json", + "examples": "sequences.fasta", + "readme": "README.md", + "changelog": "CHANGELOG.md" + }, + "schemaVersion": "3.0.0", + "attributes": { + "name": "Andesvirus (segment L)", + "reference name": "Chile-9717869", + "reference accession": "NC_003468", + "experimental": true + }, + "alignmentParams": { + "penaltyGapExtend": 1, + "penaltyGapOpen": 8, + "penaltyGapOpenInFrame": 15, + "penaltyGapOpenOutOfFrame": 18, + "penaltyMismatch": 1, + "scoreMatch": 5, + "retryReverseComplement": true, + "allowedMismatches": 10, + "minSeedCover": 0.12, + "minLength": 100 + }, + "qc": { + "missingData": { + "enabled": true, + "missingDataThreshold": 200, + "scoreBias": 100 + }, + "mixedSites": { + "enabled": true, + "mixedSitesThreshold": 4 + }, + "frameShifts": { + "enabled": true + }, + "stopCodons": { + "enabled": true + }, + "privateMutations": { + "enabled": true, + "cutoff": 150, + "typical": 100, + "weightLabeledSubstitutions": 1, + "weightReversionSubstitutions": 1, + "weightUnlabeledSubstitutions": 1 + }, + "snpClusters": { + "enabled": true, + "clusterCutOff": 15, + "scoreWeight": 50, + "windowSize": 50 + } + }, + "version": { + "tag": "unreleased" + } +} diff --git a/data_output/nextstrain/orthohantavirus/andv/l/unreleased/reference.fasta b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/reference.fasta new file mode 100644 index 000000000..30c0f8f67 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/reference.fasta @@ -0,0 +1,111 @@ +>NC_003468.2 Andes virus segment L, complete genome +TAGTAGTAGACTCCGGGATAGAAAAAGTTAGAAAAATGGAAAAGTATAGAGAGATTCATC +AGAGAGTTAGGGACCTTGCACCTGGAACGGTATCAGCATTAGAATGCATAGATCTACTGG +ATAGGCTCTACGCTGTCAGACATGACCTGGTTGACCAGATGATAAAACATGACTGGTCTG +ATAATAAAGATGTAGAAAGACCTATAGGTCAAGTTTTACTGATGGCTGGCATACCTAATG +ATATTATACAAGGCATGGAGAAGAAGATTATACCAAATAGCCCTTCTGGACAAGTATTGA +AAAGCTTTTTCCGAATGACACCAGATAATTATAAAATTACAGGTAACTTGATTGAGTTTA +TTGAAGTGACTGTAACAGCTGATGTGTCACGAGGTATTAGGGAGAAGAAAATAAAGTATG +AAGGAGGCCTCCAATTTGTTGAGCACTTACTGGAAACTGAATCAAGGAAGGGTAATATAC +CGCAACCTTATAAAATAACATTCTCAGTGGTTGCAGTTAAAACAGATGGATCAAACATCT +CGACTCAGTGGCCCAGTCGGAGGAACGATGGGGTAGTTCAGCACATGCGTCTAGTCCAAG +CTGATATAAATTATGTCAGAGAGCATTTAATAAAGTTAGATGAGAGAGCATCTTTGGAGG +CAATGTTTAACTTAAAGTTCCATGTATCAGGCCCTAAACTGAGATACTTTAACATCCCTG +ATTATAGACCACAGCAGCTATGTGAACCACGGATTGACAACTTAATACAATATTGCAAGA +ATTGGTTGACAAAAGAACATAAGTTTGTATTCAAAGAAGTCAGTGGAGCTAATGTGATTC +AAGCATTTGAGAGTCATGAACAGTTACATTTACAGAAATACAACGAATCACGAAAACCAA +GAAATTTTTTACTCTTGCAGCTTACAGTGCAAGGGGCATATCTACCATCAACAATCAGTT +CTGACCAGTGCAATACTAGGATTGGGTGTCTAGAAATATCAAAAAACCAACCAGAAACAC +CAGTACAGATGCTTGCATTGGATATATCTTATAAGTATCTGAGTCTTACAAGGGATGAGT +TGATCAATTATTATAGCCCTAGAGTGCACTTTCAATCGAGCCCTAATGTGAAGGAACCAG +GGACACTGAAGTTAGGATTATCACAATTAAATCCACTCTCTAAATCAATTCTTGACAATG +TTGGAAAGCATAAAAAGGATAAAGGATTATTTGGTGAGATCATAGATAGCATAAATGTGG +CAAGTCAAATACAGATCAATGCATGTGCAAAAATAATTGAGCAGATCTTATCAAATCTTG +AAATAAACATTGGAGAAATAAATGCTAGTATGCCTTCTCCTAATAAGACAACAGGTGTAG +ATGACCTGTTAAATAAATTTTATGATAATGAGCTTGGTAAATATATGTTATCCATTCTGA +GGAAAACAGCAGCATGGCATATAGGCCATCTAGTCAGAGATATCACAGAAAGTTTAATTG +CACATGCTGGGCTGCGCCGTTCTAAATATTGGTCAGTACATGCATATGACCATGGGAATG +TAATTTTGTTTATCTTGCCATCAAAGTCACTAGAGGTAGTAGGTTCTTATATAAGGTATT +TCACAGTATTTAAAGATGGTATAGGGTTGATAGACGCAGATAATATTGATTCTAAGGCCG +AAATTGATGGTGTCACCTGGTGTTATTCTAAGGTCATGAGTATTGATTTAAACAGGTTAT +TGGCTTTGAACATAGCTTTTGAGAAGTCACTTCTTGCCACGGCTACATGGTTCCAATATT +ATACTGAAGACCAAGGCCATTTTCCCCTTCAACATGCATTAAGGTCAATCTTTTCTTTCC +ACTTTTTACTCTGTGTGTCACAAAAGATGAAGCTATGTGCAATATTTGATAACCTTCGTT +ATCTGATACCATCAGTAACATCTTTGTACTCTGGGTACGAGTTGTTAATAGAAAAATTCT +TTGAGAGACCATTTAAGAGTTCACTGGATGTATACCTTTATTCTATCATAAAATCTCTAT +TAATTAGTTTGGCACAAAATAATAAAGTTCGATTTTACTCAAGAGTTCGTTTGTTAGGAT +TGACAGTTGATCACTCCACGGTCGGAGCAAGTGGTGTTTACCCCTCTTTAATGTCCCGTG +TTGTTTACAAACATTACAGAAGTTTAATCTCTGAAGCTACAACTTGTTTTTTCTTATTTG +AAAAGGGTTTGCATGGGAATTTACCAGAAGAGGCTAAAATACATCTTGAAACCATTGAAT +GGGCTCGGAAGTTCCAGGAGAAAGAAAAACAATATGGTGATATTCTTCTAAAGGAAGGCT +ATACAATTGAATCTGTAATCAATGGAGAAGTTGATGTAGAACAACAGCTTTTTTGTCAGG +AGGTCTCAGAGCTAAGTGCACAAGAGCTCAACAAATATTTACAGGCAAAATCTCAAGTTT +TATGTGCTAATATCATGAATAAACACTGGGACAAACCATATTTCAGTCAAACACGCAATA +TCAGTCTCAAGGGAATGTCTGGGGCATTGCAAGAGGATGGACATTTAGCTGCTAGTGTGA +CACTGATTGAAGCAATTAGGTTTTTAAATAGATCACAAACCAATCCAAATGTTATTGATA +TGTATGAGCAGACTAAACAATCAAAGGCACAAGCTAGGATTGTTAGGAAATACCAGAGAA +CAGAAGCAGATAGAGGATTTTTTATCACAACATTACCAACTAGGGTGCGATTAGAAATAA +TAGAAGATTATTTCGATGCAATTGCAAAGGTTGTGCCTGAAGAATATATTTCTTATGGTG +GGGATAAAAAAGTTCTAAATATTCAGAATGCACTAGAGAAAGCACTTAGATGGGCATCTG +GAGTATCAGAAATTACAACAAGCACTGGTAAAAGCATCAAGTTTAAGCGGAAATTAATGT +ATGTTAGTGCTGATGCCACAAAATGGTCACCAGGAGATAATTCTGCTAAGTTTAGGAGAT +TTACACAAGCAATATATGATGGCTTATCAGACAACAAACTGAAATGTTGTGTTGTTGATG +CATTACGTAACATTTATGAGACTGAATTTTTTATGTCCAGGAAATTACACCGATATATTG +ATAGTATGGAAAATCATTCAGATGCGGTTGAAGATTTCTTGGCATTTTTCTCAAATGGAG +TCTCAGCCAATGTAAAGGGAAACTGGCTTCAAGGGAACTTAAATAAATGCTCATCATTAT +TTGGTGCTGCTGTCTCATTACTTTTTCGGGAGGTCTGGAAACAATTGTTTCCAGAATTAG +AGTGTTTTTTTGAATTTGCACATCATTCAGATGATGCATTGTTCATTTATGGCTATCTGG +AGCCTGAAGATGATGGAACAGATTGGTTTTTGTATGTATCACAGCAGATACAGGCAGGAA +ACTTTCATTGGCATGCTATAAATCAAGAGATGTGGAAGAGCATGTTTAATCTACATGAGC +ACTTACTATTAATGGGTTCTATTAAAGTGTCACCTAAGAAGACAACAGTATCACCTACTA +ATGCAGAATTTCTTTCTACTTTTTTTGAAGGTTGTGCTGTGTCAATCCCTTTTGTTAAAA +TCTTACTGGGTTCATTATCAGATCTTCCTGGGTTAGGTTTCTTTGATGATTTAGCAGCAG +CACAAAGCAGATGTGTAAAGTCACTAGATTTGGGTGCTTGCCCACAATTAGCTCAACTAG +CTATAGTATTATGCACAAGCAAAGTTGAGAGGTTGTATGGTACTGCTGATGGAATGGTAA +ACTCTCCAACAGCATTCCTTAAGGTGAATAAAGCACACGTACCAGTACCACTTGGTGGTG +ATGGCTCAATGTCTATTATGGAGCTTGCAACAGCTGGTTTTGGGATGGCAGATAAGAATA +TTTTAAAAAATGCATTCATATCTTATAAGCATACTCGTAGAGATGGTGATAGGTACGTAT +TGGGTTTATTTAAATTTTTGATGTCATTAAGTGAGGATGTATTCCAGCACGACCGATTGG +GTGAGTTTAGTTTTGTAGGTAAAGTTCAATGGAAAGTGTTCACTCCTAAAGCTGAATTTG +AATTTCATGATCAATTTTCACATAATTATTTATTAGAGTGGACACGTCAACATCCTGTGT +ATGACTATATTATTCCTAGAAATAGAGATAATTTGCTTGTATACCTTGTAAGAAAGTTGA +ATGATCCTAGCATCATTACAGCTATGACTATGCAGTCACCATTACAACTTCGTTTCCGTA +TGCAAGCAAAGCAACATATGAAAGTATGCCGGTATGAAGGTGAATGGGTCACATTCAGGG +AGGTACTTGCTGCAGCTGATAGTTTTGCTACGAGTTACCAACCTACTGAAAGGGACATGG +ATCTCTTTAATACACTTGTAAGTTGTACATTTTCTAAAGAGTATGCTTGGAAAGACTTTT +TAAATGAAGTAAGGTGTGAGGTCTTAACAACAAGACATGTACATAGGCCTAAAATTGCTA +GGACATTCACTGTTAGAGAAAAGGACCAGGCTATACAAAATCCAATAAATTCGGTGATTG +GCTATAAGTATGCTCTTACAGTGGATGAAGTCAGTGATGTTCTTGATAGTGCATTCTTCC +CAGAGTCTCTATCTGCAGACTTACAGGTTATGAAAGATGGAGTTTACAGAGAATTAGGAC +TTGATATAAGTTCTCCTGAAGTCCTAAAACGCATAGCACCACTATTATATAAGGCAGGAA +GGTCACGTGTTGTTATTGTGGAAGGAAATGTAGAAGGGACAGCTGAGTCAATCTGTAGTT +ATTGGCTCAAGACAATGTCACTGATTAAAACAATCAGAGTAAGACCTAAGAAGGAGGTAC +TGAAAGCTATGTCTTTATATAGTGTTAAAGAAAATATTGGATTGCAGGATGATATTGCAG +CAACTCGACTATGCATAGAAATCTGGAGATGGTGTAAGGCAAATGAACAGGATGTTAAAG +AATGGCTAACATCTCTGTACTTTGAAAAACAGACATTGATGGATTGGGTAGAAAGGTTTA +GAAGGAAAGGAGTTGTTCCTATTGATCCTGAAATACAATGTATTGGCCTACTCTTATATG +ATGTATTAGGTTATAAAAGTGTGTTACAAATGCAAGCAAACCGAAGAGCCTATTCAGGTA +AGCAATATGATGCATACTGTGTGCAAACATATAACGAGGAAACAAAACTATATGAAGGTG +ACCTTCGTGTTACTTTTAATTTTGGTTTAGATTGTGCAAGGTTAGAAGTTTTTTGGGATA +AAAAAGAGTATATCTTAGAGACATCTATCACCCAACGACATGTGTTGCGGTTACTGATGG +AAGAAGTGTCACAAGAATTAATTAGATGTGGAATGAGATTCAAAACAGAGCAAGTCAATC +AAACTCGGAGCTTAGTGTTATTCAAAACAGAGGCTGGTTTTGAATGGGGTAAGCCTAATG +TGCCATGTATTGTATATAAACACTGTGTCTTGAGAACTGGGCTTCGTACGAAACAGCCAA +TTAATAAAGAGTTCATGATAAATGTACAAAGTGATGGTTTCCGTGCAATAGCACAGATGG +ATATTGAGAGTCCACGGTTCTTGTTAGCACATGCATATCATACACTGCGTGATATTAGAT +ATCAAGCAGTGCAGGCAGTAGGGAATGTATGGTTTAAAACAGAACAGCACAAACTATTTA +TTAACCCAATTATATCATCAGGGCTTTTAGAAAACTTTATGAAAGGCTTACCTGCTGCCA +TACCTCCTGCTGCATATTCCCTCATAATGAACAAGGCTAAGATTTCTGTGGATTTGTTTA +TGTTCAATGAGCTATTAGCACTTATAAATAGGAATAATATCCTCAACCTTGATGGGATTG +AAGAAACATCTGAAGGTTATAGTACTGTGACATCAATGTCTAGCAAGCAGTGGTCTGAAG +AGATGAGTTTAATGTCTGATGATGATATTGATGATATGGAGGACTTTACTATAGCACTGG +ATGATATTGACTTTGAACAAATAAATTTGGAAGAGGATATACAACACTTTCTGCAGGATG +AATCAGCATATGTTGGTGATTTATTGATTCAGACAGAAGACATTGAGGTTAAAAAGATAC +GTGGGGTGACAAGAGTATTAGAGCCAGTCAAGCTATTAAAAAGCTGGGTTTCTAAAGGCC +TTGCTATAGACAAAGTATACAATCCTATCGGGATAATCTTAATGGCAAGATACATGTCAA +AAACATACAATTTCAGTTCAACACCTCTTGCACTATTAAATCCATATGACTTGACAGAAC +TTGAAAGTGTTGTAAAGGGATGGGGAGAAACTGTAAATGATCGATTCAAAGATTTAGATA +TTGAGGCACAAACAGTTGTTAAAGAAAAGGGTGTACAGCCAGAAGATGTACTCCCTGATT +CATTATTCTCTTTCAGGCATGTTGATGTTTTGCTGCGAAGGTTGTTCCCGCGTGACCCTG +TATCAACATTCTATTAGTGGATTTTATACCTTATTCATACAGTATGTATATTGTAGTGTT +CTTTTCCCGGAGCATACTACTA diff --git a/data_output/nextstrain/orthohantavirus/andv/l/unreleased/sequences.fasta b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/sequences.fasta new file mode 100644 index 000000000..e6b84a36f --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/sequences.fasta @@ -0,0 +1,1102 @@ +>AF291704 +TAGTAGTAGACTCCGGGATAGAAAAAGTTAGAAAAATGGAAAAGTATAGAGAGATTCATC +AGAGAGTTAGGGACCTTGCACCTGGAACGGTATCAGCATTAGAATGCATAGATCTACTGG +ATAGGCTCTACGCTGTCAGACATGACCTGGTTGACCAGATGATAAAACATGACTGGTCTG +ATAATAAAGATGTAGAAAGACCTATAGGTCAAGTTTTACTGATGGCTGGCATACCTAATG +ATATTATACAAGGCATGGAGAAGAAGATTATACCAAATAGCCCTTCTGGACAAGTATTGA +AAAGCTTTTTCCGAATGACACCAGATAATTATAAAATTACAGGTAACTTGATTGAGTTTA +TTGAAGTGACTGTAACAGCTGATGTGTCACGAGGTATTAGGGAGAAGAAAATAAAGTATG +AAGGAGGCCTCCAATTTGTTGAGCACTTACTGGAAACTGAATCAAGGAAGGGTAATATAC +CGCAACCTTATAAAATAACATTCTCAGTGGTTGCAGTTAAAACAGATGGATCAAACATCT +CGACTCAGTGGCCCAGTCGGAGGAACGATGGGGTAGTTCAGCACATGCGTCTAGTCCAAG +CTGATATAAATTATGTCAGAGAGCATTTAATAAAGTTAGATGAGAGAGCATCTTTGGAGG +CAATGTTTAACTTAAAGTTCCATGTATCAGGCCCTAAACTGAGATACTTTAACATCCCTG +ATTATAGACCACAGCAGCTATGTGAACCACGGATTGACAACTTAATACAATATTGCAAGA +ATTGGTTGACAAAAGAACATAAGTTTGTATTCAAAGAAGTCAGTGGAGCTAATGTGATTC +AAGCATTTGAGAGTCATGAACAGTTACATTTACAGAAATACAACGAATCACGAAAACCAA +GAAATTTTTTACTCTTGCAGCTTACAGTGCAAGGGGCATATCTACCATCAACAATCAGTT +CTGACCAGTGCAATACTAGGATTGGGTGTCTAGAAATATCAAAAAACCAACCAGAAACAC +CAGTACAGATGCTTGCATTGGATATATCTTATAAGTATCTGAGTCTTACAAGGGATGAGT +TGATCAATTATTATAGCCCTAGAGTGCACTTTCAATCGAGCCCTAATGTGAAGGAACCAG +GGACACTGAAGTTAGGATTATCACAATTAAATCCACTCTCTAAATCAATTCTTGACAATG +TTGGAAAGCATAAAAAGGATAAAGGATTATTTGGTGAGATCATAGATAGCATAAATGTGG +CAAGTCAAATACAGATCAATGCATGTGCAAAAATAATTGAGCAGATCTTATCAAATCTTG +AAATAAACATTGGAGAAATAAATGCTAGTATGCCTTCTCCTAATAAGACAACAGGTGTAG +ATGACCTGTTAAATAAATTTTATGATAATGAGCTTGGTAAATATATGTTATCCATTCTGA +GGAAAACAGCAGCATGGCATATAGGCCATCTAGTCAGAGATATCACAGAAAGTTTAATTG +CACATGCTGGGCTGCGCCGTTCTAAATATTGGTCAGTACATGCATATGACCATGGGAATG +TAATTTTGTTTATCTTGCCATCAAAGTCACTAGAGGTAGTAGGTTCTTATATAAGGTATT +TCACAGTATTTAAAGATGGTATAGGGTTGATAGACGCAGATAATATTGATTCTAAGGCCG +AAATTGATGGTGTCACCTGGTGTTATTCTAAGGTCATGAGTATTGATTTAAACAGGTTAT +TGGCTTTGAACATAGCTTTTGAGAAGTCACTTCTTGCCACGGCTACATGGTTCCAATATT +ATACTGAAGACCAAGGCCATTTTCCCCTTCAACATGCATTAAGGTCAATCTTTTCTTTCC +ACTTTTTACTCTGTGTGTCACAAAAGATGAAGCTATGTGCAATATTTGATAACCTTCGTT +ATCTGATACCATCAGTAACATCTTTGTACTCTGGGTACGAGTTGTTAATAGAAAAATTCT +TTGAGAGACCATTTAAGAGTTCACTGGATGTATACCTTTATTCTATCATAAAATCTCTAT +TAATTAGTTTGGCACAAAATAATAAAGTTCGATTTTACTCAAGAGTTCGTTTGTTAGGAT +TGACAGTTGATCACTCCACGGTCGGAGCAAGTGGTGTTTACCCCTCTTTAATGTCCCGTG +TTGTTTACAAACATTACAGAAGTTTAATCTCTGAAGCTACAACTTGTTTTTTCTTATTTG +AAAAGGGTTTGCATGGGAATTTACCAGAAGAGGCTAAAATACATCTTGAAACCATTGAAT +GGGCTCGGAAGTTCCAGGAGAAAGAAAAACAATATGGTGATATTCTTCTAAAGGAAGGCT +ATACAATTGAATCTGTAATCAATGGAGAAGTTGATGTAGAACAACAGCTTTTTTGTCAGG +AGGTCTCAGAGCTAAGTGCACAAGAGCTCAACAAATATTTACAGGCAAAATCTCAAGTTT +TATGTGCTAATATCATGAATAAACACTGGGACAAACCATATTTCAGTCAAACACGCAATA +TCAGTCTCAAGGGAATGTCTGGGGCATTGCAAGAGGATGGACATTTAGCTGCTAGTGTGA +CACTGATTGAAGCAATTAGGTTTTTAAATAGATCACAAACCAATCCAAATGTTATTGATA +TGTATGAGCAGACTAAACAATCAAAGGCACAAGCTAGGATTGTTAGGAAATACCAGAGAA +CAGAAGCAGATAGAGGATTTTTTATCACAACATTACCAACTAGGGTGCGATTAGAAATAA +TAGAAGATTATTTCGATGCAATTGCAAAGGTTGTGCCTGAAGAATATATTTCTTATGGTG +GGGATAAAAAAGTTCTAAATATTCAGAATGCACTAGAGAAAGCACTTAGATGGGCATCTG +GAGTATCAGAAATTACAACAAGCACTGGTAAAAGCATCAAGTTTAAGCGGAAATTAATGT +ATGTTAGTGCTGATGCCACAAAATGGTCACCAGGAGATAATTCTGCTAAGTTTAGGAGAT +TTACACAAGCAATATATGATGGCTTATCAGACAACAAACTGAAATGTTGTGTTGTTGATG +CATTACGTAACATTTATGAGACTGAATTTTTTATGTCCAGGAAATTACACCGATATATTG +ATAGTATGGAAAATCATTCAGATGCGGTTGAAGATTTCTTGGCATTTTTCTCAAATGGAG +TCTCAGCCAATGTAAAGGGAAACTGGCTTCAAGGGAACTTAAATAAATGCTCATCATTAT +TTGGTGCTGCTGTCTCATTACTTTTTCGGGAGGTCTGGAAACAATTGTTTCCAGAATTAG +AGTGTTTTTTTGAATTTGCACATCATTCAGATGATGCATTGTTCATTTATGGCTATCTGG +AGCCTGAAGATGATGGAACAGATTGGTTTTTGTATGTATCACAGCAGATACAGGCAGGAA +ACTTTCATTGGCATGCTATAAATCAAGAGATGTGGAAGAGCATGTTTAATCTACATGAGC +ACTTACTATTAATGGGTTCTATTAAAGTGTCACCTAAGAAGACAACAGTATCACCTACTA +ATGCAGAATTTCTTTCTACTTTTTTTGAAGGTTGTGCTGTGTCAATCCCTTTTGTTAAAA +TCTTACTGGGTTCATTATCAGATCTTCCTGGGTTAGGTTTCTTTGATGATTTAGCAGCAG +CACAAAGCAGATGTGTAAAGTCACTAGATTTGGGTGCTTGCCCACAATTAGCTCAACTAG +CTATAGTATTATGCACAAGCAAAGTTGAGAGGTTGTATGGTACTGCTGATGGAATGGTAA +ACTCTCCAACAGCATTCCTTAAGGTGAATAAAGCACACGTACCAGTACCACTTGGTGGTG +ATGGCTCAATGTCTATTATGGAGCTTGCAACAGCTGGTTTTGGGATGGCAGATAAGAATA +TTTTAAAAAATGCATTCATATCTTATAAGCATACTCGTAGAGATGGTGATAGGTACGTAT +TGGGTTTATTTAAATTTTTGATGTCATTAAGTGAGGATGTATTCCAGCACGACCGATTGG +GTGAGTTTAGTTTTGTAGGTAAAGTTCAATGGAAAGTGTTCACTCCTAAAGCTGAATTTG +AATTTCATGATCAATTTTCACATAATTATTTATTAGAGTGGACACGTCAACATCCTGTGT +ATGACTATATTATTCCTAGAAATAGAGATAATTTGCTTGTATACCTTGTAAGAAAGTTGA +ATGATCCTAGCATCATTACAGCTATGACTATGCAGTCACCATTACAACTTCGTTTCCGTA +TGCAAGCAAAGCAACATATGAAAGTATGCCGGTATGAAGGTGAATGGGTCACATTCAGGG +AGGTACTTGCTGCAGCTGATAGTTTTGCTACGAGTTACCAACCTACTGAAAGGGACATGG +ATCTCTTTAATACACTTGTAAGTTGTACATTTTCTAAAGAGTATGCTTGGAAAGACTTTT +TAAATGAAGTAAGGTGTGAGGTCTTAACAACAAGACATGTACATAGGCCTAAAATTGCTA +GGACATTCACTGTTAGAGAAAAGGACCAGGCTATACAAAATCCAATAAATTCGGTGATTG +GCTATAAGTATGCTCTTACAGTGGATGAAGTCAGTGATGTTCTTGATAGTGCATTCTTCC +CAGAGTCTCTATCTGCAGACTTACAGGTTATGAAAGATGGAGTTTACAGAGAATTAGGAC +TTGATATAAGTTCTCCTGAAGTCCTAAAACGCATAGCACCACTATTATATAAGGCAGGAA +GGTCACGTGTTGTTATTGTGGAAGGAAATGTAGAAGGGACAGCTGAGTCAATCTGTAGTT +ATTGGCTCAAGACAATGTCACTGATTAAAACAATCAGAGTAAGACCTAAGAAGGAGGTAC +TGAAAGCTATGTCTTTATATAGTGTTAAAGAAAATATTGGATTGCAGGATGATATTGCAG +CAACTCGACTATGCATAGAAATCTGGAGATGGTGTAAGGCAAATGAACAGGATGTTAAAG +AATGGCTAACATCTCTGTACTTTGAAAAACAGACATTGATGGATTGGGTAGAAAGGTTTA +GAAGGAAAGGAGTTGTTCCTATTGATCCTGAAATACAATGTATTGGCCTACTCTTATATG +ATGTATTAGGTTATAAAAGTGTGTTACAAATGCAAGCAAACCGAAGAGCCTATTCAGGTA +AGCAATATGATGCATACTGTGTGCAAACATATAACGAGGAAACAAAACTATATGAAGGTG +ACCTTCGTGTTACTTTTAATTTTGGTTTAGATTGTGCAAGGTTAGAAGTTTTTTGGGATA +AAAAAGAGTATATCTTAGAGACATCTATCACCCAACGACATGTGTTGCGGTTACTGATGG +AAGAAGTGTCACAAGAATTAATTAGATGTGGAATGAGATTCAAAACAGAGCAAGTCAATC +AAACTCGGAGCTTAGTGTTATTCAAAACAGAGGCTGGTTTTGAATGGGGTAAGCCTAATG +TGCCATGTATTGTATATAAACACTGTGTCTTGAGAACTGGGCTTCGTACGAAACAGCCAA +TTAATAAAGAGTTCATGATAAATGTACAAAGTGATGGTTTCCGTGCAATAGCACAGATGG +ATATTGAGAGTCCACGGTTCTTGTTAGCACATGCATATCATACACTGCGTGATATTAGAT +ATCAAGCAGTGCAGGCAGTAGGGAATGTATGGTTTAAAACAGAACAGCACAAACTATTTA +TTAACCCAATTATATCATCAGGGCTTTTAGAAAACTTTATGAAAGGCTTACCTGCTGCCA +TACCTCCTGCTGCATATTCCCTCATAATGAACAAGGCTAAGATTTCTGTGGATTTGTTTA +TGTTCAATGAGCTATTAGCACTTATAAATAGGAATAATATCCTCAACCTTGATGGGATTG +AAGAAACATCTGAAGGTTATAGTACTGTGACATCAATGTCTAGCAAGCAGTGGTCTGAAG +AGATGAGTTTAATGTCTGATGATGATATTGATGATATGGAGGACTTTACTATAGCACTGG +ATGATATTGACTTTGAACAAATAAATTTGGAAGAGGATATACAACACTTTCTGCAGGATG +AATCAGCATATGTTGGTGATTTATTGATTCAGACAGAAGACATTGAGGTTAAAAAGATAC +GTGGGGTGACAAGAGTATTAGAGCCAGTCAAGCTATTAAAAAGCTGGGTTTCTAAAGGCC +TTGCTATAGACAAAGTATACAATCCTATCGGGATAATCTTAATGGCAAGATACATGTCAA +AAACATACAATTTCAGTTCAACACCTCTTGCACTATTAAATCCATATGACTTGACAGAAC +TTGAAAGTGTTGTAAAGGGATGGGGAGAAACTGTAAATGATCGATTCAAAGATTTAGATA +TTGAGGCACAAACAGTTGTTAAAGAAAAGGGTGTACAGCCAGAAGATGTACTCCCTGATT +CATTATTCTCTTTCAGGCATGTTGATGTTTTGCTGCGAAGGTTGTTCCCGCGTGACCCTG +TATCAACATTCTATTAGTGGATTTTATACCTTATTCATACAGTATGTATATTGTAGTGTT +CTTTTCCCGGAGCATACTACTA +>FV536444 +TAGTAGTATGTTTTGGGAAAAGAATATTATAATATATATATTGTATGAATAAGGTATAAA +ATTTATTAATAGAATGTTGATATAGGGTTATGTGGGAATAATTTTTGTAGTAAAATATTA +ATATGTTTGAAAGAGAATAATGAATTAGGGAGTATATTTTTTGGTTGTATATTTTTTTTT +TTAATAATTGTTTGTGTTTTAATATTTAAATTTTTGAATTGATTATTTATAGTTTTTTTT +TATTTTTTTATAATATTTTTAAGTTTTGTTAAGTTATATGGATTTAATAGTGTAAGAGGT +GTTGAATTGAAATTGTATGTTTTTGATATGTATTTTGTTATTAAGATTATTTTGATAGGA +TTGTATATTTTGTTTATAGTAAGGTTTTTAGAAATTTAGTTTTTTAATAGTTTGATTGGT +TTTAATATTTTTGTTATTTTATGTATTTTTTTAATTTTAATGTTTTTTGTTTGAATTAAT +AAATTATTAATATATGTTGATTTATTTTGTAGAAAGTGTTGTATATTTTTTTTTAAATTT +ATTTGTTTAAAGTTAATATTATTTAGTGTTATAGTAAAGTTTTTTATATTATTAATATTA +TTATTAGATATTAAATTTATTTTTTTAGATTATTGTTTGTTAGATATTGATGTTATAGTA +TTATAATTTTTAGATGTTTTTTTAATTTTATTAAGGTTGAGGATATTATTTTTATTTATA +AGTGTTAATAGTTTATTGAATATAAATAAATTTATAGAAATTTTAGTTTTGTTTATTATG +AGGGAATATGTAGTAGGAGGTATGGTAGTAGGTAAGTTTTTTATAAAGTTTTTTAAAAGT +TTTGATGATATAATTGGGTTAATAAATAGTTTGTGTTGTTTTGTTTTAAATTATATATTT +TTTATTGTTTGTATTGTTTGATATTTAATATTATGTAGTGTATGATATGTATGTGTTAAT +AAGAATTGTGGATTTTTAATATTTATTTGTGTTATTGTATGGAAATTATTATTTTGTATA +TTTATTATGAATTTTTTATTAATTGGTTGTTTTGTATGAAGTTTAGTTTTTAAGATATAG +TGTTTATATATAATATATGGTATATTAGGTTTATTTTATTTAAAATTAGTTTTTGTTTTG +AATAATATTAAGTTTTGAGTTTGATTGATTTGTTTTGTTTTGAATTTTATTTTATATTTA +ATTAATTTTTGTGATATTTTTTTTATTAGTAATTGTAATATATGTTGTTGGGTGATAGAT +GTTTTTAAGATATATTTTTTTTTATTTTAAAAAATTTTTAATTTTGTATAATTTAAATTA +AAATTAAAAGTAATATGAAGGTTATTTTTATATAGTTTTGTTTTTTTGTTATATGTTTGT +ATATAGTATGTATTATATTGTTTATTTGAATAGGTTTTTTGGTTTGTTTGTATTTGTAAT +ATATTTTTATAATTTAATATATTATATAAGAGTAGGTTAATATATTGTATTTTAGGATTA +ATAGGAATAATTTTTTTTTTTTTAAATTTTTTTATTTAATTTATTAATGTTTGTTTTTTA +AAGTATAGAGATGTTAGTTATTTTTTAATATTTTGTTTATTTGTTTTATATTATTTTTAG +ATTTTTATGTATAGTTGAGTTGTTGTAATATTATTTTGTAATTTAATATTTTTTTTAATA +TTATATAAAGATATAGTTTTTAGTATTTTTTTTTTAGGTTTTATTTTGATTGTTTTAATT +AGTGATATTGTTTTGAGTTAATAATTATAGATTGATTTAGTTGTTTTTTTTATATTTTTT +TTTATAATAATAATATGTGATTTTTTTGTTTTATATAATAGTGGTGTTATGTGTTTTAGG +ATTTTAGGAGAATTTATATTAAGTTTTAATTTTTTGTAAATTTTATTTTTTATAATTTGT +AAGTTTGTAGATAGAGATTTTGGGAAGAATGTATTATTAAGAATATTATTGATTTTATTT +ATTGTAAGAGTATATTTATAGTTAATTATTGAATTTATTGGATTTTGTATAGTTTGGTTT +TTTTTTTTAATAGTGAATGTTTTAGTAATTTTAGGTTTATGTATATGTTTTGTTGTTAAG +ATTTTATATTTTATTTTATTTAAAAAGTTTTTTTAAGTATATTTTTTAGAAAATGTATAA +TTTATAAGTGTATTAAAGAGATTTATGTTTTTTTTAGTAGGTTGGTAATTTGTAGTAAAA +TTATTAGTTGTAGTAAGTATTTTTTTGAATGTGATTTATTTATTTTTATATTGGTATATT +TTTATATGTTGTTTTGTTTGTATATGGAAATGAAGTTGTAATGGTGATTGTATAGTTATA +GTTGTAATGATGTTAGGATTATTTAATTTTTTTATAAGGTATATAAGTAAATTATTTTTA +TTTTTAGGAATAATATAGTTATATATAGGATGTTGATGTGTTTATTTTAATAAATAATTA +TGTGAAAATTGATTATGAAATTTAAATTTAGTTTTAGGAGTGAATATTTTTTATTGAATT +TTATTTATAAAATTAAATTTATTTAATTGGTTGTGTTGGAATATATTTTTATTTAATGAT +ATTAAAAATTTAAATAAATTTAATATGTATTTATTATTATTTTTATGAGTATGTTTATAA +GATATGAATGTATTTTTTAAAATATTTTTATTTGTTATTTTAAAATTAGTTGTTGTAAGT +TTTATAATAGATATTGAGTTATTATTATTAAGTGGTATTGGTATGTGTGTTTTATTTATT +TTAAGGAATGTTGTTGGAGAGTTTATTATTTTATTAGTAGTATTATATAATTTTTTAATT +TTGTTTGTGTATAATATTATAGTTAGTTGAGTTAATTGTGGGTAAGTATTTAAATTTAGT +GATTTTATATATTTGTTTTGTGTTGTTGTTAAATTATTAAAGAAATTTAATTTAGGAAGA +TTTGATAATGAATTTAGTAAGATTTTAATAAAAGGGATTGATATAGTATAATTTTTAAAA +AAAGTAGAAAGAAATTTTGTATTAGTAGGTGATATTGTTGTTTTTTTAGGTGATATTTTA +ATAGAATTTATTAATAGTAAGTGTTTATGTAGATTAAATATGTTTTTTTATATTTTTTGA +TTTATAGTATGTTAATGAAAGTTTTTTGTTTGTATTTGTTGTGATATATATAAAAATTAA +TTTGTTTTATTATTTTTAGGTTTTAGATAGTTATAAATGAATAATGTATTATTTGAATGA +TGTGTAAATTTAAAAAAATATTTTAATTTTGGAAATAATTGTTTTTAGATTTTTTGAAAA +AGTAATGAGATAGTAGTATTAAATAATGATGAGTATTTATTTAAGTTTTTTTGAAGTTAG +TTTTTTTTTATATTGGTTGAGATTTTATTTGAGAAAAATGTTAAGAAATTTTTAATTGTA +TTTGAATGATTTTTTATATTATTAATATATTGGTGTAATTTTTTGGATATAAAAAATTTA +GTTTTATAAATGTTATGTAATGTATTAATAATATAATATTTTAGTTTGTTGTTTGATAAG +TTATTATATATTGTTTGTGTAAATTTTTTAAATTTAGTAGAATTATTTTTTGGTGATTAT +TTTGTGGTATTAGTATTAATATATATTAATTTTTGTTTAAATTTGATGTTTTTATTAGTG +TTTGTTGTAATTTTTGATATTTTAGATGTTTATTTAAGTGTTTTTTTTAGTGTATTTTGA +ATATTTAGAATTTTTTTATTTTTATTATAAGAAATATATTTTTTAGGTATAATTTTTGTA +ATTGTATTGAAATAATTTTTTATTATTTTTAATTGTATTTTAGTTGGTAATGTTGTGATA +AAAAATTTTTTATTTGTTTTTGTTTTTTGGTATTTTTTAATAATTTTAGTTTGTGTTTTT +GATTGTTTAGTTTGTTTATATATATTAATAATATTTGGATTGGTTTGTGATTTATTTAAA +AATTTAATTGTTTTAATTAGTGTTATATTAGTAGTTAAATGTTTATTTTTTTGTAATGTT +TTAGATATTTTTTTGAGATTGATATTGTGTGTTTGATTGAAATATGGTTTGTTTTAGTGT +TTATTTATGATATTAGTATATAAAATTTGAGATTTTGTTTGTAAATATTTGTTGAGTTTT +TGTGTATTTAGTTTTGAGATTTTTTGATAAAAAAGTTGTTGTTTTATATTAATTTTTTTA +TTGATTATAGATTTAATTGTATAGTTTTTTTTTAGAAGAATATTATTATATTGTTTTTTT +TTTTTTTGGAATTTTTGAGTTTATTTAATGGTTTTAAGATGTATTTTAGTTTTTTTTGGT +AAATTTTTATGTAAATTTTTTTTAAATAAGAAAAAATAAGTTGTAGTTTTAGAGATTAAA +TTTTTGTAATGTTTGTAAATAATATGGGATATTAAAGAGGGGTAAATATTATTTGTTTTG +ATTGTGGAGTGATTAATTGTTAATTTTAATAAATGAATTTTTGAGTAAAATTGAATTTTA +TTATTTTGTGTTAAATTAATTAATAGAGATTTTATGATAGAATAAAGGTATATATTTAGT +GAATTTTTAAATGGTTTTTTAAAGAATTTTTTTATTAATAATTTGTATTTAGAGTATAAA +GATGTTATTGATGGTATTAGATAATGAAGGTTATTAAATATTGTATATAGTTTTATTTTT +TGTGATATATAGAGTAAAAAGTGGAAAGAAAAGATTGATTTTAATGTATGTTGAAGGGGA +AAATGGTTTTGGTTTTTAGTATAATATTGGAATTATGTAGTTGTGGTAAGAAGTGATTTT +TTAAAAGTTATGTTTAAAGTTAATAATTTGTTTAAATTAATATTTATGATTTTAGAATAA +TATTAGGTGATATTATTAATTTTGGTTTTAGAATTAATATTATTTGTGTTTATTAATTTT +ATATTATTTTTAAATATTGTGAAATATTTTATATAAGAATTTATTATTTTTAGTGATTTT +GATGGTAAGATAAATAAAATTATATTTTTATGGTTATATGTATGTATTGATTAATATTTA +GAATGGTGTAGTTTAGTATGTGTAATTAAATTTTTTGTGATATTTTTGATTAGATGGTTT +ATATGTTATGTTGTTGTTTTTTTTAGAATGGATAATATATATTTATTAAGTTTATTATTA +TAAAATTTATTTAATAGGTTATTTATATTTGTTGTTTTATTAGGAGAAGGTATATTAGTA +TTTATTTTTTTAATGTTTATTTTAAGATTTGATAAGATTTGTTTAATTATTTTTGTATAT +GTATTGATTTGTATTTGATTTGTTATATTTATGTTATTTATGATTTTATTAAATAATTTT +TTATTTTTTTTATGTTTTTTAATATTGTTAAGAATTGATTTAGAGAGTGGATTTAATTGT +GATAATTTTAATTTTAGTGTTTTTGGTTTTTTTATATTAGGGTTTGATTGAAAGTGTATT +TTAGGGTTATAATAATTGATTAATTTATTTTTTGTAAGATTTAGATATTTATAAGATATA +TTTAATGTAAGTATTTGTATTGGTGTTTTTGGTTGGTTTTTTGATATTTTTAGATATTTA +ATTTTAGTATTGTATTGGTTAGAATTGATTGTTGATGGTAGATATGTTTTTTGTATTGTA +AGTTGTAAGAGTAAAAAATTTTTTGGTTTTTGTGATTTGTTGTATTTTTGTAAATGTAAT +TGTTTATGATTTTTAAATGTTTGAATTATATTAGTTTTATTGATTTTTTTGAATATAAAT +TTATGTTTTTTTGTTAATTAATTTTTGTAATATTGTATTAAGTTGTTAATTTGTGGTTTA +TATAGTTGTTGTGGTTTATAATTAGGGATGTTAAAGTATTTTAGTTTAGGGTTTGATATA +TGGAATTTTAAGTTAAATATTGTTTTTAAAGATGTTTTTTTATTTAATTTTATTAAATGT +TTTTTGATATAATTTATATTAGTTTGGATTAGATGTATGTGTTGAATTATTTTATTGTTT +TTTTGATTGGGTTATTGAGTTGAGATGTTTGATTTATTTGTTTTAATTGTAATTATTGAG +AATGTTATTTTATAAGGTTGTGGTATATTATTTTTTTTTGATTTAGTTTTTAGTAAGTGT +TTAATAAATTGGAGGTTTTTTTTATATTTTATTTTTTTTTTTTTAATATTTTGTGATATA +TTAGTTGTTATAGTTATTTTAATAAATTTAATTAAGTTATTTGTAATTTTATAATTATTT +GGTGTTATTTGGAAAAAGTTTTTTAATATTTGTTTAGAAGGGTTATTTGGTATAATTTTT +TTTTTTATGTTTTGTATAATATTATTAGGTATGTTAGTTATTAGTAAAATTTGATTTATA +GGTTTTTTTATATTTTTATTATTAGATTAGTTATGTTTTATTATTTGGTTAATTAGGTTA +TGTTTGATAGTGTAGAGTTTATTTAGTAGATTTATGTATTTTAATGTTGATATTGTTTTA +GGTGTAAGGTTTTTAATTTTTTGATGAATTTTTTTATATTTTTTTATTTTTTTAATTTTT +TTTATTTTGGAGTTTATTATTA +>MN258187 +GTAGACTCCGGGATAGAAAAAGTTAGAAAAATGGAAAAGTACAGAGAAATTCATCAGAGA +GTTAGGGATCTTGCACCTGGGACAGTATCAGCATTAGAATGCATAGATCTACTGGATAGG +CTCTATGCTGTCAGACACGATTTAGTTGATCAGATGATAAAACATGACTGGTCTGACAAT +AAAGATGTAGAAAGGCCTATAGGTCAAGTTTTGCTGATGGCTGGCATACCTAATGATATT +ATACAAGGCATGGAGAAGAAGATTATACCAAATAGCCCTTCTGGACAAGTGCTGAAGAGC +TTTTTCCGAATGACACCAGACAATTATAAAATCACCGGCAATTTGATTGAGTTTATTGAA +GTGACTGTAACAGCTGATGTATCACGAGGTATTAGGGAGAAGAAAATAAAGTATGAAGGT +GGCCTTCAATTTGTTGAGCACTTACTTGAGGTTGAATCAAGGAAGGGTAACATACCGCAA +CCCTATAAAATAACATTCTCAGTAGTGGCAGTTAAAACAGATGGATCAAACATCTCAACT +CAATGGCCTAGTCGAAGGAACGATGGGGTAGTTCAGCACATGCGTCTAGTCCAAGCTGAT +ATTAATTATGTCAGAGAGCACTTAATAAAGTTAGATGAGAGAGCATCACTGGAAGCAATG +TTCAACTTAAAATTCCATGTGTCAGGCCCTAAATTGAGATACTTCAACATCCCTGATTAT +AGACCACAGCAGCTATGTGAACCACGGATTGATAACTTAATACAATATTGCAAGAATTGG +TTGACAAAAGAACATAAGTTTGTATTCAAGGAAGTCAGTGGAGCTAATGTGATTCAAGCA +TTTGAGAGTCATGAGCAGTCACACTTACAGAAATACAATGAATCACGGAAACCGAGAAAT +TTTTTACTCTTGCAGCTTACAGTGCAAGGGGCATATCTGCCATCGACAATCAGCTCTGAC +CAGTGCAATACTAGGATTGGGTGTCTAGAAATATCCAAAAACCAACCAGAGACACCAGTA +CAGATGCTTGCATTAGATATAGCTTATAAGTATCTGAGCCTTACAAAGGATGAGTTAATT +AACTATTATAGTCCTAGAGTGCACTTTCAATCAAGCCCCAGTGTAAAGGAACCGGGGACA +TTAAAGTTAGGATTATCACAATTAAATCCACTGTCTAAATCAATCCTTGACAATGTTGGA +AAGCATAAAAAGGATAAGGGATTGTTTGGTGAGATTATAGATAGTATAAATGTAGCAAGT +CAAATACAGATCAATGCATGTGCAAAAATAATTGAGCAGATCTTATCTAATCTTGAAATA +AACATTGGAGAAATAAATGCTAGTATGCCTTCCCCTAATAAGACAACAGGCGTAGATGAC +TTGTTGAATAAATTTTATGATAATGAGCTTGGGAAATATATGTTATCCATTCTGAGGAAA +ACAGCAGCATGGCATATAGGCCATTTAGTCAGAGATATCACAGAAAGTTTAATTGCACAT +GCCGGTCTGCGTCGTTCTAAATACTGGTCAGTGCATGCATATGACCATGGGAATGTAATT +TTGTTTATTTTGCCATCAAAGTCATTGGAAGTAGTAGGTTCTTATATAAGGTATTTCACA +GTATTCAAGGACGGTATAGGATTGATTGATGCGGACAATATTGATTCTAAAGCTGAAATT +GATGGTGTTACTTGGTGTTATTCTAAAGTCATGAGTATCGATTTAAACAGGCTATTAGCC +TTGAATATAGCCTTTGAGAAGTCACTTCTTGCCACAGCAACATGGTTCCAATATTATACT +GAAGACCAAGGCCATTTTCCCCTTCAACATGCATTAAGGTCAATCTTTTCTTTTCACTTT +TTACTATGTGTGTCACAGAAGATGAAACTATGCGCAATATTTGATAACCTTCGTTATCTG +ATACCATCAGTAACATCTTTGTATTCTGGGTATGAATTGCTAATAGAAAAATTCTTTGAG +AGGCCATTTAAGAGTTCACTGGATGTATACCTTTATTCTATTATAAAGTCTCTGTTAATT +AGTTTGGCACAAAATAATAAAGTTCGATTTTACTCAAGAGTTCGCTTGTTAGGATTGACA +GTTGATCATTCTACGGTTGGAGCAAGTGGTGTTTATCCCTCTTTAATGTCCCGTGTTGTC +TATAAACACTACAGAAGTCTAATCTCTGAAGCTACAACCTGTTTTTTCTTATTTGAAAAG +GGTTTGCATGGGAATCTACCAGAAGAGGCCAAAATACATCTTGAAACCATTGAATGGGCT +CGAAAGTTTCAGGAGAAAGAGAAACAATACGGTGATATTCTTCTAAAGGAAGGCTATACA +ATTGAATCTGTAATCAATGGAGAAGTTAATGTAGAACAACAGCTCTTTTGTCAAGAGGTT +TCAGAGCTAAGTGCACAAGAACTTAACAAATATCTACAAGCAAAATCTCAAGTTTTATGT +GCCAATATCATGAATAAGCACTGGGATAAACCATACTTTAGTCAAACACGCAATATCAGC +CTTAAGGGAATGTCCGGTGCATTGCAAGAAGATGGGCATTTAGCTGCTAGTGTAACACTA +ATTGAAGCAATTAGATTTTTAAATAGATCACAGACTAATCCAAATGTTATTGATATGTAT +GAGCAAACTAAACAAGCAAAGGCACAAGCTAGGATTGTCAGGAAATACCAGAGAACAGAA +GCAGATAGAGGATTTTTTATTACAACATTACCAACTAGGGTGCGACTGGAGATAATAGAA +GATTATTTCGATGCAATTGCAAAGGTTGTGCCTGAAGAATACATTTCTTATGGTGGGGAT +AAAAAGGTTCTAAATATTCAGAATGCACTAGAGAAAGCACTTAGATGGGCATCTGGGGTA +TCAGAAATTACAACAAGTACTGGTAAAAGCATCAAGTTTAAGCGGAAATTAATGTATGTT +AGTGCTGATGCAACAAAATGGTCACCAGGAGACAATTCTGCCAAATTCAGGAGATTTACA +CAAGCAATATATGATGGTTTATCAGACAACAAGTTAAAATGTTGTGTTGTTGATGCATTA +CGCAATATTTATGAGACTGAATTCTTTATGTCTAGAAAATTACACCGATATATTGATAGT +ATGGAAGATCATTCAGATGCAGTTGAAGACTTCTTGGCGTTTTTTTCAAATGGAGTCTCA +GCCAATGTGAAGGGAAATTGGCTTCAAGGGAATTTAAATAAATGCTCATCGTTATTTGGT +GCTGCTGTCTCATTACTTTTTCGGGAGGTCTGGAAACAATTATTTCCAGAATTAGAGTGC +TTTTTTGAATTTGCACATCATTCAGATGATGCATTATTTATTTATGGCTATCTAGAGCCT +GAAGATGATGGAACAGATTGGTTTTTGTATGTATCACAGCAGATACAAGCAGGAAACTTT +CATTGGCATGCTATAAATCAAGAGATGTGGAAGAGTATGTTTAATCTACATGAACATTTA +CTATTAATGGGCTCCATTAAAGTGTCACCTAAGAAGACAACAGTGTCACCCACTAATGCA +GAATTTCTTTCTACTTTCTTTGAAGGTTGTGCTGTGTCAATTCCCTTTGTTAAAATATTA +CTAGGCTCATTATCAGATCTTCCTGGGTTAGGTTTCTTTGATGATTTGGCAGCAGCACAG +AGCAGATGTGTAAAGTCATTGGATTTAGGTGCTTGCCCACAGTTAGCTCAACTAGCTATA +GTGTTATGCACAAGCAAAGTTGAGAGGTTGTATGGTACTGCTGATGGAATGGTGAACTCT +CCAACAGCATTCCTTAAGGTAAATAAAGCACATGTACCAGTACCACTTGGTGGTGATGGC +TCGATGTCTATTATGGAACTTGCAACAGCTGGTTTTGGAATGGCAGATAAGAATATTTTA +AAAAATGCATTCATATCTTATAAGCATACTCGTAGAGAAGGTGATAGATATGTCTTGGGT +TTATTTAAATTTTTGATGTCATTAAGTGAGGATGTATTCCAGCATGACCGATTAGGTGAG +TTTAGTTTTGTAGGTAAAGTTCAATGGAAGGTGTTTACTCCTAAAGCTGAATTTGAATTT +CATGATCAATTTTCGCATAATTATTTATTAGAATGGACACGTCAACATCCTGTGTATGAC +TATATTATTCCTAGAAATAGGGATAACTTGCTTGTATACCTTGTGAGAAAGTTGAATGAT +CCTAGCATCATCACAGCTATGACTATGCAGTCACCATTGCAACTCCGTTTTCGTATGCAG +GCGAAACAACATATGAAAGTATGCCGGTATGAAGGTGAATGGGTCACATTCAGGGAGGTA +CTTGCTGCAGCTGATAGTTTTGCCACAAATTACCAGCCTACTGAAAGGGACATGGATCTC +TTTAATACACTTGTAAGTTGTACATTCTCTAAAGAGTATGCTTGGAAAGATTTTTTAAAT +GAAGTAAGGTGTGAGGTCTTAACAACAAGGCATGTACATAGGCCTAAAATTGCTAGGACA +TTCACTGTTAGGGAAAAGGACCAGGCTATACAAAATCCAATAAACTCTGTAATTGGTTAT +AAGTATGCTCTTACAGTAGATGAAGTCAGTGATGTCCTTGATAGTGCATTCTTCCCGGAG +TCTTTATCCGCAGACTTACAGGTTATGAAGGATGGAGTTTACAGAGAATTAGGACTTGAC +ATAAGTTCTCCTGAGGTTTTAAAACGTATAGCACCGCTATTATATAAGGCAGGAAGGTCA +CGTGTTGTTATTGTTGAAGGAAATGTAGAGGGGACAGCTGAGTCAATCTGTAGTTATTGG +CTTAAGACAATGTCACTAATTAAAACAATTAGAGTAAGACCTAAGAAGGAAGTATTGAAA +GCTATGTCTTTATACAGTGTTAAGGAAAATATTGGATTACAGGATGATATTGCAGCAACT +CGACTGTGCATAGAAATCTGGAGGTGGTGTAAGGCAAATGAACAGGATGTCAAGGAATGG +CTAACATCTTTATACTTTGAAAAACAAACATTGATGGATTGGGTAGAAAGGTTTAGAAGG +AAAGGAGTTGTGCCTATTGATCCTGAAATACAGTGTATTGGCCTGCTCTTATATGATGTA +TTAGGTTATAAAAGTGTTTTACAAATGCAAGCAAACCGAAGAGCCTATTCAGGTAAGCAG +TATGATGCATACTGTGTGCAGACGTATAACGAGGAAACAAAACTATATGAAGGTGACCTC +CGTGTTACTTTCAATTTTGGTCTAGATTGTGCAAGGTTAGAAGTTTTTTGGGATAAAAGA +GAATATATCTTAGAGACATCGATCACCCAACGACATGTATTGCGGTTGTTGATGGAAGAA +GTGTCACAAGAATTGATTAGATGTGGAATGAGATTCAAAACAGAACAGGTCAATCAAACT +CGGAGCTTAGTGTTATTCAAAACAGAGGCTGGTTTTGAATGGGGCAAGCCTAATGTACCA +TGTATTGTATATAAACACTGTGTTTTGAGAACTGGACTCCGTACAAAACAGCCAATTAAC +AAAGAGTTCATGATAAATGTACAAAGTGACGGGTTCCGTGCAATAGCACAGATGGATATT +GAAAGTCCACGGTTCTTGTTGGCACATGCATATCATACATTGCGTGATATTAGGTATCAG +GCAGTACAGGCGGTAGGGAATGTATGGTTTAAAACAGAACAGCACAAACTATTCATCAAC +CCAATCATATCATCAGGACTTTTAGAAAACTTTATGAAAGGCTTACCTGCTGCCATACCT +CCTGCTGCATATTCTCTAATAATGAACAAGGCTAAAATTTCTGTGGATTTGTTTATGTTC +AATGAACTATTAGCACTTATAAATAGGAATAATATTCTCAACCTTGATGGGATTGAAGAA +ACATCTGAAGGTTATAGTACTGTGACATCAATGTCTAGCAAGCACTGGTCTGAAGAGATG +AGTTTAATGTCTGATGATGATATAGATGACATGGAGGATTTCACTATAGCGCTAGATGAT +ATTGACTTTGAACAAATAAATTTGGAAGAAGATATACAGCATTTCCTGCAGGATGAATCA +GCATATGTTGGTGATTTATTAATTCAGACAGAGGACATTGAAGTCAAGAAGATACGGGGA +GTGACAAGAGTATTAGAGCCAGTTAAGCTATTAAAAAGTTGGGTTTCTAAAGGTCTTGCT +ATAGATAAAGTATACAATCCTATTGGGATAATCTTAATGGCAAGATACATGTCAAAAACA +TACAATTTCAGTTCAACACCTCTTGCACTATTAAATCCATATGATTTGACAGAACTTGAA +AGTGTTGTAAAAGGATGGGGAGAAACTGTGAATGATCGATTCAAAGATTTAGATGTTGAG +GCACAAACAGTTGTTAAAGAGAAAGGTGTACAACCAGAAGATGTACTCCCTGATTCATTA +TTCTCTTTTAGGCATGTTGATGTTTTGCTACGAAGGTTGTTTCCGCGTGACCCTGTATCA +ACATTCTATTAGTGGATTTTATACCTTGTTCATACAGTATGTATATTGTAGTGTTCTTTT +CCC +>MN850097 +CTCCGGGATAGAAAAAGTTAGAAAAATGGAAAAGTACAGAGAAATTCATCAGAGAGTTAG +GGATCTTGCACCTGGAACGGTATCAGCATTAGAATGCATAGATCTACTGGATAGGCTCTA +TGCTGTCAGACACGATCTAGTTGATCAGATGATAAAACATGACTGGTCTGACAATAAAGA +TGTAGAGAGGCCTATAGGTCAAGTTTTGCTGATGGCTGGCATACCTAATGATATTATACA +AGGCATGGAGAAGAAGATCATACCAAATAGCCCTTCTGGACAAGTGCTGAAGAGCTTTTT +CCGAATGACACCAGACAATTATAAAATCACCGGCAATTTGATTGAGTTTATTGAAGTGAC +TGTAACAGCTGATGTATCACGAGGTATTAGGGAGAAGAAAATAAAGTATGAAGGTGGCCT +TCAATTTGTTGAGCACTTACTTGAGGTTGAATCAAGGAAGGGTAACATACCGCAACCTTA +TAAAATAACATTCTCAGTAGTAGCAGTTAAAACAGATGGATCAAACATCTCAACTCAATG +GCCTAGTCGAAGGAACGATGGGGTAGTTCAGCACATGCGTCTAGTCCAAGCTGATATTAA +TTATGTCAGAGAGCACTTAATAAAGTTAGATGAGAGAGCATCACTGGAAGCAATGTTCAA +CTTAAAATTTCATGTGTCAGGCCCTAAATTGAGATACTTCAATATCCCTGATTATAGACC +ACAGCAGCTATGTGAACCACGGATTGATAACTTAATACAATATTGTAAGAATTGGTTGAC +AAAAGAACATAAGTTTGTATTCAAGGAAGTCAGTGGAGCTAATGTGATTCAAGCATTTGA +GAGTCATGAGCAGTCACACTTACAGAAATACAATGAATCACGGAAACCGAGAAATTTTTT +ACTCTTGCAGCTTACAGTGCAAGGGGCATATCTGCCATCAACTATCAGTTCTGACCAGTG +CAATACTAGGATTGGGTGTCTAGAAATATCAAAGAACCAACCAGAGACACCAGTACAGAT +GCTTGCATTAGATATAGCTTATAAGTATCTGAGCCTTACAAAGGATGAGTTAATTAACTA +TTATAGTCCTAGAGTGCACTTTCAATCAAGCCCCAGTGTAAAGGAACCAGGGACATTAAA +GTTAGGGTTATCACAATTAAATCCACTGTCTAAATCAATCCTTGATAATGTTGGAAAGCA +CAAAAAGGATAAAGGATTGTTTGGTGAGATTATAGATAGTATAAATGTAGCAAGCCAAAT +ACAGATCAATGCATGTGCAAAAATAATTGAGCAGATCTTATCAAATCTTGAAATAAACAT +TGGAGAAATAAATGCTAGTATGCCTTCCCCTAATAAAACAACAGGTGTAGATGACTTGTT +GAATAAATTTTATGATAATGAGCTTGGGAAATATATGTTATCCATTCTGAGGAAAACAGC +AGCATGGCATATAGGCCATCTAGTCAGAGATATCACAGAAAGTTTAATTGCACATGCCGG +TCTGCGTCGTTCTAAATACTGGTCAGTGCATGCATATGACCATGGGAATGTAATTTTGTT +TATTTTGCCATCAAAGTCATTGGAAGTAGTAGGTTCTTATATAAGGTATTTCACAGTATT +CAAGGACGGTATAGGATTGATTGATGTGGACAATATTGATTCTAAAGCTGAAATTGACGG +TGTTACTTGGTGTTATTCTAAAGTCATGAGTATCGATTTAAACAGGCTATTAGCCTTGAA +TATAGCCTTTGAGAAGTCACTTCTTGCCACAGCAACATGGTTCCAATATTATACTGAAGA +CCAAGGCCATTTTCCCCTTCAACATGCATTAAGGTCAATCTTTTCTTTTCACTTTTTACT +ATGTGTGTCACAGAAGATGAAACTATGTGCAATATTTGATAACCTTCGTTATCTGATACC +ATCAGTAACATCTTTGTATTCTGGGTATGAATTGCTAATAGAAAAATTCTTTGAGAGGCC +ATTTAAGAGTTCACTGGATGTATACCTTTATTCTATTATAAAGTCTCTGTTAATTAGTTT +GGCACAAAATAATAAAGTTCGATTTTACTCAAGAGTTCGCTTGTTAGGATTGACAGTTGA +TCATTCTACAGTCGGAGCAAGTGGTGTTTATCCCTCTTTAATGTCCCGTGTTGTCTATAA +ACACTACAGAAGTCTGATCTCTGAAGCTACAACCTGTTTTTTCTTATTTGAAAAGGGTTT +GCATGGGAATCTACCAGAAGAGGCTAAAATACATCTTGAAACCATTGAATGGGCTCGAAA +GTTTCAGGAGAAAGAGAAACACTACGGTGATATTCTTCTAAAGGAAGGCTATACAATTGA +ATCTGTAATCAATGGGGAAGTTAATGTAGAACAACAGCTCTTTTGTCAAGAGGTTTCAGA +GCTAAGTGCACAAGAACTTAACAAATATCTACAAGCAAAATCTCAAGTTTTATGTGCCAA +TATCATGAATAAACACTGGGATAAACCATACTTTAGTCAAACACGCAATATCAGCCTTAA +GGGAATGTCCGGCGCATTGCAAGAAGATGGGCATTTAGCTGCTAGTGTAACACTAATTGA +AGCAATTAGATTTTTAAATAGATCACAGACTAATCCAAATGTTATTGATATGTATGAGCA +AACTAAACAAGCAAAGGCACAAGCTAGGATTGTCAGGAAATACCAGAGAACAGAAGCAGA +TAGAGGATTTTTTATTACAACATTACCAACTAGGGTGCGACTGGAGATAATAGAAGATTA +TTTTGATGCAATTGCAAAGGTTGTGCCTGAAGAATACATTTCTTATGGTGGGGATAAAAA +GGTTCTAAATATTCAAAATGCACTAGAGAAAGCACTTAGATGGGCATCTGGGGTGTCAGA +AATTACAACAAGTACTGGTAAAAGCATCAAGTTTAAGCGGAAATTAATGTATGTTAGTGC +CGATGCAACAAAATGGTCACCAGGAGATAATTCTGCCAAATTCAGGAGATTTACACAAGC +AATATATGATGGTTTATCAGACAACAAGTTAAAATGTTGTGTTGTTGATGCATTACGCAA +TATTTATGAGACTGAATTCTTTATGTCTAGAAAATTATACCGATATATTGATAGTATGGG +AGATCATTCAGATGCAGTTGAAGACTTCTTGGCGTTTTTTTCAAATGGAGTCTCAGCCAA +TGTGAAGGGAAATTGGCTTCAAGGGAATTTAAATAAATGCTCATCGTTATTTGGTGCTGC +TGTCTCATTACTTTTTCGGGAGGTCTGGAAACAATTATTTCCAGAATTAGAGTGCTTTTT +TGAATTTGCACATCATTCAGATGATGCATTATTTATTTATGGCTATCTAGAGCCTGAAGA +TGATGGAACAGATTGGTTTTTGTATGTATCACAGCAGATACAAGCAGGAAACTTTCATTG +GCATGCTATAAATCAAGAGATGTGGAAGAGTATGTTTAATCTACATGAACATTTACTATT +AATGGGCTCAATTAAAGTGTCACCAAAGAAGACAACAGTGTCACCTACTAATGCAGAATT +TCTTTCTACTTTCTTTGAAGGTTGTGCTGTGTCAATTCCCTTTGTTAAAATATTATTAGG +CTCATTATCAGATCTTCCTGGGTTAGGTTTCTTTGATGATTTGGCAGCAGCACAGAGCAG +ATGTGTAAAGTCATTGGATTTAGGTGCTTGCCCACAGTTAGCTCAACTAGCTATAGTGTT +ATGCACAAGCAAAGTTGAGAGGTTGTATGGTACTGCTGATGGAATGGTGAACTCTCCAAC +AGCATTCCTTAAGGTAAATAAAGCACATGTACCAGTACCACTTGGTGGTGATGGCTCGAT +GTCTATTATGGAACTTGCAACAGCTGGTTTTGGAATGGCAGATAAGAATATTTTAAAAAA +TGCATTCATATCTTATAAGCATACTCGTAGGGAAGGTGATAGATATGTCTTGGGTTTGTT +TAAATTTTTGATGTCATTAAGTGAGGATGTATTCCAGCATGACCGATTAGGTGAGTTTAG +TTTTGTAGGTAAAGTTCAATGGAAAGTGTTTACTCCTAAAGCTGAATTTGAATTTCATGA +TCAATTTTCGCATAATTATTTATTAGAATGGACACGTCAACATCCTGTGTATGACTATAT +TATTCCTAGAAATAGGGATAATTTGCTTGTATACCTTGTGAGAAAGTTGAATGATCCTAG +CATCATCACAGCTATGACTATGCAGTCACCATTGCAACTCCGTTTTCGTATGCAGGCGAA +ACAACATATGAAAGTATGCCGGTATGAAGGTGAATGGGTCACATTCAGGGAGGTACTTGC +TGCAGCTGATAGTTTTGCCACAAATTACCAGCCTACTGAAAGGGACATGGATCTCTTTAA +TACACTTGTAAGTTGTACATTCTCTAAAGAGTATGCTTGGAAAGACTTTTTAAATGAAGT +AAGGTGTGAGGTCTTAACAACAAGACATGTACATAGGCCTAAAATTGCTAGGACATTCAC +TGTTAGGGAAAAGGACCAGGCTATACAAAATCCAATAAACTCTGTGATTGGTTATAAGTA +TGCTCTTACAGTAGATGAAGTTAGTGATGTCCTTGATAGTGCATTCTTCCCGGAGTCTTT +ATCCGCAGACTTACAGGTTATGAAGGATGGAGTTTACAGGGAATTAGGACTTGACATAAG +TTCTCCTGAGGTTTTAAAACGTATAGCACCGCTATTATATAAGGCAGGAAGGTCACGTGT +TGTTATCGTTGAAGGAAATGTAGAGGGGACAGCTGAGTCAATCTGTAGTTATTGGCTTAA +GACAATGTCACTAATTAAAACAATTAGAGTAAGACCTAAGAAGGAAGTATTGAAAGCTAT +GTCTTTATACAGTGTTAAGGAAAATATTGGATTACAGGATGATATTGCGGCAACTCGACT +GTGCATAGAAATCTGGAGGTGGTGTAAGGCAAATGAACAGGATGTTAAGGAATGGCTAAC +ATCTTTATACTTTGAAAAACAAACATTAATGGATTGGGTAGAGAGGTTTAGAAGGAAAGG +AGTTGTGCCTATTGATCCTGAAATCCAGTGTATTGGCCTGCTCTTATATGATGTATTAGG +TTATAAAAGTGTTTTACAAATGCAAGCAAACCGAAGAGCTTATTCAGGTAAGCAGTATGA +TGCATACTGTGTGCAGACGTATAACGAGGAAACAAAACTATATGAAGGTGACCTCCGTGT +TACTTTCAATTTTGGTCTAGATTGTGCAAGGTTAGAAGTTTTTTGGGATAAAAGAGAATA +TATCTTAGAGACATCGATCACCCAACGACATGTATTGCGGTTGTTGATGGAAGAAGTGTC +ACAAGAATTGATTAGATGTGGAATGAGATTCAAAACAGAACAGGTCAATCAAACTCGGAG +CTTAGTGTTATTCAAAACAGAGGCTGGTTTTGAATGGGGTAAGCCTAATGTACCATGTAT +TGTATATAAACACTGTGTTTTGAGAACTGGACTCCGTACAAAACAGCCAATTAACAAAGA +GTTCATGATAAATGTACAAAGTGATGGGTTCCGTGCAATAGCACAGATGGATATTGAAAG +TCCACGGTTCTTGTTGGCACATGCATATCATACATTGCGTGATATTAGGTATCAGGCAGT +ACAGGCGGTAGGGAATGTATGGTTTAAAACAGAACAGCACAAACTATTCATCAACCCAAT +CATATCATCAGGACTTTTAGAAAACTTTATGAAAGGCTTACCCGCTGCCATACCTCCTGC +TGCATATTCTCTAATAATGAATAAGGCTAAAATTTCTGTGGATTTGTTTATGTTCAATGA +ACTATTAGCACTTATAAATAGGAATAATATTCTCAACCTTGATGGGATTGAAGAAACATC +TGAAGGTTATAGTACTGTGACATCAATGTCTAGCAAGCACTGGTCTGAAGAGATGAGTTT +AATGTCTGATGATGATATAGATGACATGGAGGATTTCACTATAGCACTAGATGATATTGA +CTTTGAACAAATAAATTTGGAAGAAGATATACAGCATTTCCTGCAGGATGAATCAGCATA +TGTTGGTGATTTATTAATTCAGACAGAGGACATTGAAGTCAAGAAGATACGGGGAGTGAC +AAGAGTATTAGAGCCAGTTAAGCTATTAAAAAGTTGGGTTTCTAAAGGTCTTGCTATAGA +CAAAGTATACAATCCTATTGGGATAATCTTAATGGCAAGATACATGTCAAAAACATACAA +TTTCAGTTCAACACCTCTTGCACTATTAAATCCATATGATTTGACAGAACTTGAAAGTGT +TGTAAAAGGATGGGGAGAAACTGTAAATGATCGATTCAAAGATTTAGATGTTGAGGCACA +AACAGTTGTTAAAGAGAAAGGTGTACAGCCAGAAGATGTACTCCCTGATTCATTATTCTC +TTTTAGGCATGTTGATGTTTTGCTGCGAAGGTTGTTTCCACGTGACCCTGTATCAACATT +CTATTAGTGGATTTTATACCTTGTTCATACAGTATGTATATTGTAGTGTTCT +>MT956621 +TAGTAGTAGACTCCGGGATAGAAAAAGTTAGAAAAATGGAAAAGTATAGAGAGATTCATC +AGAGAGTTAGGGACCTTGCACCTGGAACGGTATCAGCATTAGAATGCATAGATCTACTGG +ATAGGCTCTACGCTGTCAGACATGACCTGGTTGACCAGATGATAAAACATGACTGGTCTG +ATAATAAAGATGTAGAAAGACCTATAGGTCAAGTTTTACTGATGGCTGGCATACCTAATG +ATATTATACAAGGCATGGAGAAGAAGATTATACCAAATAGCCCTTCTGGACAAGTATTGA +AAAGCTTTTTCCGAATGACACCAGATAATTATAAAATTACAGGTAACTTGATTGAGTTTA +TTGAAGTGACTGTAACAGCTGATGTGTCACGAGGTATTAGGGAGAAGAAAATAAAGTATG +AAGGAGGCCTCCAATTTGTTGAGCACTTACTGGAAACTGAATCAAGGAAGGGTAATATAC +CGCAACCTTATAAAATAACATTCTCAGTGGTTGCAGTTAAAACAGATGGATCAAACATCT +CGACTCAGTGGCCCAGTCGGAGGAACGATGGGGTAATTCAGCACATGCGTCTAGTCCAAG +CTGATATAAATTATGTCAGAGAGCATTTAATAAAGTTAGATGAGAGAGCATCTTTGGAGG +CAATGTTTAACTTAAAGTTCCATGTATCAGGCCCTAAACTGAGATACTTTAACATCCCTG +ATTATAGACCACAGCAGCTATGTGAACCACGGATTGACAACTTAATACAATATTGCAAGA +ATTGGTTGACAAAAGAACATAAGTTTGTATTCAAAGAAGTCAGTGGAGCTAATGTGATTC +AAGCATTTGAGAGTCATGAACAGTTACATTTACAGAAATACAACGAATCACGAAAACCAA +GAAATTTTTTACTCTTGCAGCTTACAGTGCAAGGGGCATATCTACCATCAACAATCAGTT +CTGACCAGTGCAATACTAGGATTGGGTGTCTAGAAATATCAAAAAACCAACCAGAAACAC +CAGTACAGATGCTTGCATTGGATATATCTTATAAGTATCTGAGTCTTACAAGGGATGAGT +TGATCAATTATTATAGCCCTAGAGTGCACTTTCAATCGAGCCCTAATGTGAAGGAACCAG +GGACACTGAAGTTAGGATTATCACAATTAAATCCACTCTCTAAATCAATTCTTGACAATG +TTGGAAAGCATAAAAAGGATAAAGGATTATTTGGTGAGATCATAGATAGCATAAATGTGG +CAAGTCAAATACAGATCAATGCATGTGCAAAAATAATTGAGCAGATCTTATCAAATCTTG +AAATAAACATTGGAGAAATAAATGCTAGTATGCCTTCTCCTAATAAGACAACAGGTGTAG +ATGACCTGTTAAATAAATTTTATGATAATGAGCTTGGTAAATATATGTTATCCATTCTGA +GGAAAACAGCAGCATGGCATATAGGCCATCTAGTCAGAGATATCACAGAAAGTTTAATTG +CACATGCTGGGCTGCGCCGTTCTAAATATTGGTCAGTACATGCATATGACCATGGGAATG +TAATTTTGTTTATCTTGCCATCAAAGTCACTAGAGGTAGTAGGTTCTTATATAAGGTATT +TCACAGTATTTAAAGATGGTATAGGGTTGATAGACGCAGATAATATTGATTCTAAGGCCG +AAATTGATGGTGTCACCTGGTGTTATTCTAAGGTCATGAGTATTGATTTAAACAGGTTAT +TGGCTTTGAACATAGCTTTTGAGAAGTCACTTCTTGCCACGGCTACATGGTTCCAATATT +ATACTGAAGACCAAGGCCATTTTCCCCTTCAACATGCATTAAGGTCAATCTTTTCTTTCC +ACTTTTTACTCTGTGTGTCACAAAAGATGAAGCTATGTGCAATATTTGATAACCTTCGTT +ATCTGATACCATCAGTAACATCTTTGTACTCTGGGTACGAGTTGTTAATAGAAAAATTCT +TTGAGAGACCATTTAAGAGTTCACTGGATGTATACCTTTATTCTATCATAAAATCTCTAT +TAATTAGTTTGGCACAAAATAATAAAGTTCGATTTTACTCAAGAGTTCGTTTGTTAGGAT +TGACAGTTGATCACTCCACGGTCGGAGCAAGTGGTGTTTACCCCTCTTTAATGTCCCGTG +TTGTTTACAAACATTACAGAAGTTTAATCTCTGAAGCTACAACTTGTTTTTTCTTATTTG +AAAAGGGTTTGCATGGGAATTTACCAGAAGAGGCTAAAATACATCTTGAAACCATTGAAT +GGGCTCGGAAGTTCCAGGAGAAAGAAAAACAATATGGTGATATTCTTCTAAAGGAAGGCT +ATACAATTGAATCTGTAATCAATGGAGAAGTTGATGTAGAACAACAGCTTTTTTGTCAGG +AGGTCTCAGAGCTAAGTGCACAAGAGCTCAACAAATATTTACAGGCAAAATCTCAAGTTT +TATGTGCTAATATCATGAATAAACACTGGGACAAACCATATTTCAGTCAAACACGCAATA +TCAGTCTCAAGGGAATGTCTGGGGCATTGCAAGAGGATGGACATTTAGCTGCTAGTGTGA +CACTGATTGAAGCAATTAGGTTTTTAAATAGATCACAAACCAATCCAAATGTTATTGATA +TGTATGAGCAGACTAAACAATCAAAGGCACAAGCTAGGATTGTTAGGAAATACCAGAGAA +CAGAAGCAGATAGAGGATTTTTTATCACAACATTACCAACTAGGGTGCGATTAGAAATAA +TAGAAGATTATTTCGATGCAATTGCAAAGGTTGTGCCTGAAGAATATATTTCTTATGGTG +GGGATAAAAAAGTTCTAAATATTCAGAATGCACTAGAGAAAGCACTTAGATGGGCATCTG +GAGTATCAGAAATTACAACAAGCACTGGTAAAAGCATCAAGTTTAAGCGGAAATTAATGT +ATGTTAGTGCTGATGCCACAAAATGGTCACCAGGAGATAATTCTGCTAAGTTTAGGAGAT +TTACACAAGCAATATATGATGGCTTATCAGACAACAAACTGAAATGTTGTGTTGTTGATG +CATTACGTAACATTTATGAGACTGAATTTTTTATGTCCAGGAAATTACACCGATATATTG +ATAGTATGGAAAATCATTCAGATGCGGTTGAAGATTTCTTGGCATTTTTCTCAAATGGAG +TCTCAGCCAATGTAAAGGGAAACTGGCTTCAAGGGAACTTAAATAAATGCTCATCATTAT +TTGGTGCTGCTGTCTCATTACTTTTTCGGGAGGTCTGGAAACAATTGTTTCCAGAATTAG +AGTGTTTTTTTGAATTTGCACATCATTCAGATGATGCATTGTTCATTTATGGCTATCTGG +AGCCTGAAGATGATGGAACAGATTGGTTTTTGTATGTATCACAGCAGATACAGGCAGGAA +ACTTTCATTGGCATGCTATAAATCAAGAGATGTGGAAGAGCATGTTTAATCTACATGAGC +ACTTACTATTAATGGGTTCTATTAAAGTGTCACCTAAGAAGACAACAGTATCACCTACTA +ATGCAGAATTTCTTTCTACTTTTTTTGAAGGTTGTGCTGTGTCAATCCCTTTTGTTAAAA +TCTTACTGGGTTCATTATCAGATCTTCCTGGGTTAGGTTTCTTTGATGATTTAGCAGCAG +CACAAAGCAGATGTGTAAAGTCACTAGATTTGGGTGCTTGCCCACAATTAGCTCAACTAG +CTATAGTATTATGCACAAGCAAAGTTGAGAGGTTGTATGGTACTGCTGATGGAATGGTAA +ACTCTCCAACAGCATTCCTTAAGGTGAATAAAGCACACGTACCAGTACCACTTGGTGGTG +ATGGCTCAATGTCTATTATGGAGCTTGCAACAGCTGGTTTTGGGATGGCAGATAAGAATA +TTTTAAAAAATGCATTCATATCTTATAAGCATACTCGTAGAGATGGTGATAGGTACGTAT +TGGGTTTATTTAAATTTTTGATGTCATTAAGTGAGGATGTATTCCAGCACGACCGATTGG +GTGAGTTTAGTTTTGTAGGTAAAGTTCAATGGAAAGTGTTCACTCCTAAAGCTGAATTTG +AATTTCATGATCAATTTTCACATAATTATTTATTAGAGTGGACACGTCAACATCCTGTGT +ATGACTATATTATTCCTAGAAATAGAGATAATTTGCTTGTATACCTTGTAAGAAAGTTGA +ATGATCCTAGCATCATTACAGCTATGACTATGCAGTCACCATTACAACTTCGTTTCCGTA +TGCAAGCAAAGCAACATATGAAAGTATGCCGGTATGAAGGTGAATGGGTCACATTCAGGG +AGGTACTTGCTGCAGCTGATAGTTTTGCTACGAGTTACCAACCTACTGAAAGGGACATGG +ATCTCTTTAATACACTTGTAAGTTGTACATTTTCTAAAGAGTATGCTTGGAAAGACTTTT +TAAATGAAGTAAGGTGTGAGGTCTTAACAACAAGACATGTACATAGGCCTAAAATTGCTA +GGACATTCACTGTTAGAGAAAAGGACCAGGCTATACAAAATCCAATAAATTCGGTGATTG +GCTATAAGTATGCTCTTACAGTGGATGAAGTCAGTGATGTTCTTGATAGTGCATTCTTCC +CAGAGTCTCTATCTGCAGACTTACAGGTTATGAAAGATGGAGTTTACAGAGAATTAGGAC +TTGATATAAGTTCTCCTGAAGTCCTAAAACGCATAGCACCACTATTATATAAGGCAGGAA +GGTCACGTGTTGTTATTGTGGAAGGAAATGTAGAAGGGACAGCTGAGTCAATCTGTAGTT +ATTGGCTCAAGACAATGTCACTGATTAAAACAATCAGAGTAAGACCTAAGAAGGAGGTAC +TGAAAGCTATGTCTTTATATAGTGTTAAAGAAAATATTGGATTGCAGGATGATATTGCAG +CAACTCGACTATGCATAGAAATCTGGAGATGGTGTAAGGCAAATGAACAGGATGTTAAAG +AATGGCTAACATCTCTGTACTTTGAAAAACAGACATTGATGGATTGGGTAGAAAGGTTTA +GAAGGAAAGGAGTTGTTCCTATTGATCCTGAAATACAATGTATTGGCCTACTCTTATATG +ATGTATTAGGTTATAAAAGTGTGTTACAAATGCAAGCAAACCGAAGAGCCTATTCAGGTA +AGCAATATGATGCATACTGTGTGCAAACATATAACGAGGAAACAAAACTATATGAAGGTG +ACCTTCGTGTTACTTTTAATTTTGGTTTAGATTGTGCAAGGTTAGAAGTTTTTTGGGATA +AAAAAGAGTATATCTTAGAGACATCTATCACCCAACGACATGTGTTGCGGTTACTGATGG +AAGAAGTGTCACAAGAATTAATTAGATGTGGAATGAGATTCAAAACAGAGCAAGTCAATC +AAACTCGGAGCTTAGTGTTATTCAAAACAGAGGCTGGTTTTGAATGGGGTAAGCCTAATG +TGCCATGTATTGTATATAAACACTGTGTCTTGAGAACTGGGCTTCGTACGAAACAGACAA +TTAATAAAGAGTTCATGATAAATGTACAAAGTGATGGTTTCCGTGCAATAGCACAGATGG +ATATTGAGAGTCCACGGTTCTTGTTAGCACATGCATATCATACACTGCGTGATATTAGAT +ATCAAGCAGTGCAGGCAGTAGGGAATGTATGGTTTAAAACAGAACAGCACAAACTATTTA +TTAACCCAATTATATCATCAGGGCTTTTAGAAAACTTTATGAAAGGCTTACCTGCTGCCA +TACCTCCTGCTGCATATTCCCTCATAATGAACAAGGCTAAGATTTCTGTGGATTTGTTTA +TGTTCAATGAGCTATTAGCACTTATAAATAGGAATAATATCCTCAACCTTGATGGGATTG +AAGAAACATCTGAAGGTTATAGTACTGTGACATCAATGTCTAGCAAGCAGTGGTCTGAAG +AGATGAGTTTAATGTCTGATGATGATATTGATGATATGGAGGACTTTACTATAGCACTGG +ATGATATTGACTTTGAACAAATAAATTTGGAAGAGGATATACAACACTTTCTGCAGGATG +AATCAGCATATGTTGGTGATTTATTGATTCAGACAGAAGACATTGAGGTTAAAAAGATAC +GTGGGGTGACAAGAGTATTAGAGCCAGTCAAGCTATTAAAAAGCTGGGTTTCTAAAGGCC +TTGCTATAGACAAAGTATACAATCCTATCGGGATAATCTTAATGGCAAGATACATGTCAA +AAACATACAATTTCAGTTCAACACCTCTTGCACTATTAAATCCATATGACTTGACAGAAC +TTGAAAGTGTTGTAAAGGGATGGGGAGAAACTGTAAATGATCGATTCAAAGATTTAGATA +TTGAGGCACAAACAGTTGTTAAAGAAAAGGGTGTACAGCCAGAAGATGTACTCCCTGATT +CATTATTCTCTTTCAGGCATGTTGATGTTTTGCTGCGAAGGTTGTTCCCGCGTGACCCTG +TATCAACATTCTATTAGTGGATTTTATACCTTATTCATACAGTATGTATATTGTGGTGTT +CTTTTCCCGGAGACTACTAACTA +>OP555733 +TAGAAAAAGTTAGAAAAATGGAAAAGTACAGAGAGATTCATCAGAGAGTTAGGGATCTTG +CACCTGGAACGGTATCAGCATTAGAATGCATAGATCTACTGGATAGGCTCTATGCTGTTA +GACATGATTTAGTTGACCAGATGATAAAACATGATTGGTCTGACAATAAAGATGTAGAAA +GGCCTATAGGTCAAGTCTTGCTGATGGCTGGCATCCCTAATGATATTATACAAGGCATGG +AGAAGAAGATCATACCAAATAGCCCTTCTGGACAAGTGCTGAAGAGCTTTTTCCGAATGA +CACCAGACAACTATAAAATTACAGGCAATTTGATTGAGTTCATTGAAGTGACTGTGACAG +CTGATGTATCACGAGGTATTAGGGAGAAGAAAATAAAGTATGAAGGAGGTCTTCAGTTTG +TTGAGCACTTACTCGAAATCGAATCAAAGAAAGGTAACATACCGCAACCCTATAAAATAA +CATTCTCAGTGGTTGCAGTTAAAACAGATGGATCAAACATTTCGACTCAATGGCCTAGTC +GGAGAAACGATGGGGTAGTTCAGCACATGCGTCTAGTCCAAGCTGATATTAATTATGTCC +GAGAGCATTTAATAAAGTTAGATGAGAGAGCATCATTGGAAGCAATGTTCAACTTAAAAT +TTCATGTGTCAGGCCCTAAATTGAGATACTTCAACATCCCTGATTATAGACCACAGCAGC +TATGTGAACCGCGGATTGATAACTTAATACAATATTGCAAGAATTGGTTGACAAAAGAAC +ATAAATTTGTATTCAAGGAAGTCAGTGGAGCTAATGTGATTCAAGCATTTGAGAGTCATG +AGCAGTCACACTTACAGAAATACAATGAATCACGGAAACCGAGAAATTTTTTACTCTTGC +AACTTACGGTGCAAGGAGCATATCTGCCATCAACAATCAGTTCTGACCAGTGCAATACTA +GGATTGGGTGCCTAGAAATATCAAAAAACCAACCAGAAACACCAGTACAGATGCTTGCAT +TAGATATAGCTTATAAGTATCTGAGCCTCACAAAGGATGAGTTGATTAATTATTATAGCC +CTAGAGTGCACTTTCAATCAAGCCCTAATGTAAAGGAACCAGGGACATTAAAGTTAGGAT +TATCACAATTGAATCCACTCTCTAAATCCATCCTTGACAATGTTGGAAAGCACAAAAAGG +ATAAAGGGTTGTTTGGTGAGGTCATAGATAGCATAAATGTGGCAAGTCAAATACAGATCA +ATGCATGTGCAAAAATAATTGAGCAGATTTTATCAAATCTTGAAATAAATATTGGAGAAA +TAAATGCTAGTATGCCTTCTCCTAATAAGACAACAGGTGTGGACGACTTGTTGAATAAAT +TTTATGATAATGAGCTTGGGAAATATATGTTATCCATCCTGAGGAAAACAGCAGCATGGC +ATATAGGCCATTTAGTCAGAGATATCACAGAAAGTTTAATTGCACATGCCGGTCTGCGTC +GTTCTAAATACTGGTCAGTACATGCATATGACCATGGGAATGTAATTCTGTTTATTTTGC +CATCAAAGTCATTAGAAGTAGTAGGTTCTTATATAAGATATTTTACAGTATTTAAGGATG +GTATAGGATTAATAGATGTGGACAATATTGATTCTAAGGCCGAAATTGATGGTGTTACTT +GGTGTTACTCCAAAGTCATGAGTATTGATTTAAATAGATTATTGGCCTTAAATATAGCCT +TTGAGAAATCACTTCTTGCCACGGCAACATGGTTTCAATATTATACTGAAGACCAAGGTC +ATTTTCCCCTTCAACATGCATTGAGGTCAATCTTTTCTTTTCACTTTTTACTATGTGTGT +CACAGAAGATGAAACTATGTGCAATATTCGACAACCTTCGTTATCTGATACCATCAGTAA +CATCTTTATATTCTGGGTATGAGTTGTTAATAGAGAAATTCTTTGAGAGGCCTTTTAAGA +GTTCACTGGATGTATACCTTTATTCTATTATAAAGTCTCTGTTAATTAGTTTGGCACAAA +ATAATAAAGTTCGGTTTTACTCAAGAGTTCGCTTGTTAGGATTGACAGTTGATCATTCTA +CTGTCGGAGCAAGTGGTGTTTATCCCTCTTTAATGTCCCGTGTTGTTTATAAACATTATA +GAAGCTTAATCTCTGAAGCTACAACCTGTTTCTTCTTATTTGAAAAGGGTTTGCATGGGA +ATTTACCGGAAGAGGCTAAGATACATCTTGAAACCATCGAATGGGCTCGAAAGTTTCAGG +AGAAAGAGAAACAATATGGTGATATTCTTTTAAAGGAAGGCTATACGATTGAATCTGTAA +TTAACGGAGAAGTTAATGTAGAACAACAGCTCTTTTGTCAAGAGGTGTCGGAGCTAAGTG +CACAGGAACTCAACAAATATCTACAAGCAAAATCTCAAGTTTTATGTGCTAATATCATGA +ATAAGCACTGGGATAAACCATATTTTAGTCAAACACGCAATATCAGTCTTAAGGGAATGT +CCGGTGCATTGCAAGAAGATGGGCATTTAGCTGCTAGTGTAACACTAATTGAAGCAATTA +GATTTTTAAATAGATCACAGACCAATCCAAATGTTATTGATATGTATGAGCAAACTAAAC +AATCAAAGGCACAAGCTAGGATTGTCAGGAAGTACCAGAGAACAGAAGCAGATAGAGGAT +TTTTTATCACAACATTACCAACTAGGGTGCGACTAGAGATAATAGAAGATTATTTTGATG +CGATCGCAAAGGTTGTGCCTGAAGAATACATTTCTTATGGTGGGGATAAAAAGGTTCTAA +ATATTCAAAATGCACTAGAAAAAGCACTTAGATGGGCATCTGGAGTATCAGAAATTACAA +CAAGTACTGGTAAAAGCATTAAGTTTAAGCGGAAATTAATGTATGTTAGTGCTGATGCAA +CAAAATGGTCACCAGGAGACAATTCTGCCAAATTTAGGAGATTTACACAAGCAATATATG +ATGGTTTATCAGATAACAAGTTGAAATGTTGTGTTGTTGATGCATTGCGCAACATTTATG +AGACTGAATTCTTTATGTCTAGGAAATTACACCGATATATTGATAGTATGGAAGATCATT +CAGATGCAGTTGAAGACTTCTTGGCATTTTTTTCAAATGGAGTCTCAGCTAACGTAAAGG +GAAATTGGCTTCAAGGAAATTTAAATAAATGCTCATCGTTATTTGGTGCTGCTGTCTCAT +TACTTTTTCGGGAGGTCTGGAAACAATTATTTCCAGAATTAGAATGTTTTTTTGAATTTG +CACATCATTCAGATGATGCATTATTTATTTATGGCTATTTAGAGCCTGAAGATGATGGAA +CAGATTGGTTTTTGTATGTGTCACAGCAGATACAGGCAGGAAATTTTCATTGGCATGCTA +TAAATCAAGAGATGTGGAAGAGTATGTTTAATCTACATGAACATTTACTGTTAATGGGTT +CCATTAAAGTGTCACCTAAGAAGACAACAGTTTCACCTACTAATGCAGAATTTCTTTCTA +CTTTTTTTGAGGGTTGTGCTGTGTCAATCCCTTTTGTTAAAATATTACTAGGTTCATTAT +CAGATCTTCCTGGGTTAGGTTTCTTTGATGATTTAGCAGCAGCACAGAGTAGATGTGTAA +AGTCATTAGATTTGGGTGCTTGCCCACAATTAGCTCAACTAGCGATAGTGTTATGCACAA +GCAAAGTTGAGAGGTTGTATGGTACTGCTGATGGAATGGTAAACTCTCCAACAGCATTCC +TTAAGGTAAATAAAGCACATGTACCAGTACCACTTGGTGGTGATGGCTCAATGTCTATTA +TGGAACTTGCAACAGCTGGTTTTGGAATGGCAGATAAAAATATTCTAAAAAATGCATTCA +TGTCTTATAAGCATACTCGTAGAGAAGGTGATAGATATGTATTGGGCTTATTTAAATTTT +TGATGTCATTAAGTGAGGATGTATTCCAGCACGACCGATTAGGTGAGTTTAGTTTTGTAG +GTAAAGTTCAATGGAAAGTGTTTACTCCTAAAGCTGAATTTGAATTTCATGATCAATTTT +CGCACAATTATTTATTAGAGTGGACACGTCAACATCCTGTGTATGACTATATTATTCCTA +GAAATAGAGATAATTTGCTTGTATACCTTGTGAGAAAGTTGAATGATCCTAGCATCATCA +CAGCTATGACTATGCAGTCACCATTGCAACTCCGTTTTCGTATGCAGGCGAAACAACATA +TGAAAGTATGCCGGTATGAAGGTGAATGGGTCACATTCAGGGAGGTACTTGCTGCAGCTG +ATAGTTTCGCCACAAGTTACCAGCCTACTGAAAGGGACATGGATCTTTTTAATACACTTG +TAAGTTGTACATTCTCTAAAGAGTATGCTTGGAAAGACTTTTTAAATGAAGTAAGGTGTG +AGGTCTTAACAACAAGACATGTACATAGACCTAAAATTGCTAGGACATTCACTGTTAGGG +AAAAGGACCAGGCTATACAAAATCCAATAAATTCTGTGATTGGCTATAAGTATGCTCTCA +CAGTAGATGAAGTCAGTGATGTCCTTGATAGTGCATTCTTCCCAGAATCTTTATCCGCAG +ACTTACAGGTTATGAAGGATGGGGTTTATAGGGAATTAGGGCTTGATATAAGTTCTCCTG +AGGTTTTAAAACGCATAGCACCATTATTATATAAGGCAGGAAGGTCACGTGTTGTTATTG +TGGAAGGAAATGTAGAGGGGACAGCTGAGTCAATCTGTAGTTATTGGCTTAAGACAATGT +CACTGATTAAAACAATCAGAGTAAGACCTAAGAAGGAAGTACTGAAAGCTATGTCTTTAT +ATAGTGTTAAGGAAAATATTGGATTGCAGGACGATATTGCAGCAACTCGATTGTGCATAG +AAATCTGGAGGTGGTGTAAGGCAAATGAACAGGATGTTAAAGAATGGCTAACATCTTTGT +ATTTTGAAAAACAAACATTGATGGATTGGATAGAAAGGTTTAGAAGAAAAGGAGTTGTGC +CTATTGATCCTGAGATACAATGTATTGGCCTGCTCTTATATGATGTGTTAGGCTATAAAA +GTGTGTTACAAATGCAAGCAAACCGAAGAGCCTATTCGGGCAAGCAGTATGATGCATACT +GTGTGCAAACGTATAATGAGGAGACCAAACTATACGAAGGTGACCTCCGCGTCACTTTCA +ATTTTGGCCTAGACTGTGCAAGATTAGAAGTCTTTTGGGATAAAAGGGAGTATATTTTAG +AGACATCTATTACCCAGCGACATGTATTACGGTTGTTGATGGAAGAGGTGTCACAAGAAT +TAATTAGATGTGGAATGAGATTCAAAACAGAACAAGTCAATCAAACTAGGAGCTTAGTGT +TATTTAAAACAGAGGCTGGTTTTGAATGGGGTAAGCCTAATGTGCCATGTATTGTATATA +AACACTGTGTTTTGAGAACTGGACTTCGTACAAAACAGCCAATTAATAAAGAGTTTATGA +TAAATGTACAAAGTGATGGGTTCCGTGCAATAGCACAGATGGATATTGAAAGTCCACGGT +TCTTGTTGGCACATGCGTATCATACATTACGTGATATTAGGTATCAAGCAGTACAGGCAG +TAGGGAATGTATGGTTTAAAACAGAACAGCACAAACTATTTATTAACCCAATCATATCAT +CAGGACTCTTAGAAAATTTTATGAAAGGCTTACCTGCTGCCATACCTCCTGCTGCATATT +CTCTAATAATGAATAAGGCTAAAATCTCTGTGGATTTGTTTATGTTCAATGAACTATTAG +CACTTATAAATAGGAATAATATTCTCAACCTTGATGGGATTGAAGAAACATCTGAAGGTT +ATAGTACTGTGACATCAATGTCTAGCAAGCAGTGGTCTGAAGAGATGAGTTTAATGTCTG +ATGATGATATCGATGACATGGAGGATTTCACTATAGCATTAGATGATATTGACTTTGAAC +AAATAAATTTAGAAGAGGATATACAGCATTTTCTGCAGGATGAATCAGCATATGTTGGTG +ATTTATTAATTCAGACAGAGGACATTGAAGTTAAAAAGATACGTGGGGTGACAAGAGTAT +TAGAACCAGTTAAGCTATTAAAAAGTTGGGTTTCTAAAGGTCTTGCTATAGACAAAGTAT +ACAATCCCATTGGGATAATCCTAATGGCAAGATACATGTCAAAAACATACAATTTCAGTT +CAACACCTCTTGCACTACTAAACCCATATGACTTGACAGAGCTTGAAAGTGTTGTAAAGG +GATGGGGAGAAACTGTAAATGATCGATTTAAAGATTTAGATGTTGAGGCACAAGCTGTTG +TTAAAGAGAAAGGTGTACAACCAGAAGATGTACTCCCTGATTCATTATTCTCTTTCAGGC +ATGTTGATGTTCTGCTGCGAAGGTTGTTCCCGCGTGACCCTGTCTCAACATTCTA +>OP555735 +GTAGAAAAATGGAAAAGTACAGAGAGATTCATCAGAGAGTTAGGGATCTTGCACCTGGAA +CGGTATCAGCATTAGAATGCATAGATCTACTGGATAGGCTCTATGCTGTTAGACATGATT +TAGTTGACCAGATGATAAAACATGATTGGTCTGACAATAAAGATGTAGAAAGGCCTATAG +GTCAAGTCTTGCTGATGGCTGGCATCCCTAATGATATTATACAAGGCATGGAGAAGAAGA +TCATACCAAATAGCCCTTCTGGACAAGTGCTGAAGAGCTTTTTCCGAATGACACCAGACA +ACTATAAAATTACAGGCAATTTGATTGAGTTCATTGAAGTGACTGTGACAGCTGATGTAT +CACGAGGTATTAGGGAGAAGAAAATAAAGTATGAAGGAGGTCTTCAGTTTGTTGAGCACT +TACTCGAAATCGAATCAAAGAAAGGTAACATACCGCAACCCTATAAAATAACATTCTCAG +TGGTTGCAGTTAAAACAGATGGATCAAACATTTCGACTCAATGGCCTAGTCGGAGAAACG +ATGGGGTAGTTCAGCACATGCGTCTAGTCCAAGCTGATATTAATTATGTCCGAGAGCATT +TAATAAAGTTAGATGAGAGAGCATCATTGGAAGCAATGTTCAACTTAAAATTTCATGTGT +CAGGCCCTAAATTGAGATACTTCAACATCCCTGATTATAGACCACAGCAGCTATGTGAAC +CGCGGATTGATAACTTAATACAATATTGCAAGAATTGGTTGACAAAAGAACATAAATTTG +TATTCAAGGAAGTCAGTGGAGCTAATGTGATTCAAGCATTTGAGAGTCATGAGCAGTCAC +ACTTACAGAAATACAATGAATCACGGAAACCGAGAAATTTTTTACTCTTGCAACTTACGG +TGCAAGGAGCATATCTGCCATCAACAATCAGTTCTGACCAGTGCAATACTAGGATTGGGT +GCCTAGAAATATCAAAAAACCAACCAGAAACACCAGTACAGATGCTTGCATTAGATATAG +CTTATAAGTATCTGAGCCTCACAAAGGATGAGTTGATTAATTATTATAGCCCTAGAGTGC +ACTTTCAATCAAGCCCTAATGTAAAGGAACCAGGGACATTAAAGTTAGGATTATCACAAT +TGAATCCACTCTCTAAATCCATCCTTGACAATGTTGGAAAGCACAAAAAGGATAAAGGGT +TGTTTGGTGAGGTCATAGATAGCATAAATGTGGCAAGTCAAATACAGATCAATGCATGTG +CAAAAATAATTGAGCAGATTTTATCAAATCTTGAAATAAATATTGGAGAAATAAATGCTA +GTATGCCTTCTCCTAATAAGACAACAGGTGTGGACGACTTGTTGAATAAATTTTATGATA +ATGAGCTTGGGAAATATATGTTATCCATCCTGAGGAAAACAGCAGCATGGCATATAGGCC +ATTTAGTCAGAGATATCACAGAAAGTTTAATTGCACATGCCGGTCTGCGTCGTTCTAAAT +ACTGGTCAGTACATGCATATGACCATGGGAATGTAATTCTGTTTATTTTGCCATCAAAGT +CATTAGAAGTAGTAGGTTCTTATATAAGATATTTTACAGTATTTAAGGATGGTATAGGAT +TAATAGATGTGGACAATATTGATTCTAAGGCCGAAATTGATGGTGTTACTTGGTGTTACT +CCAAAGTCATGAGTATTGATTTAAATAGATTATTGGCCTTAAATATAGCCTTTGAGAAAT +CACTTCTTGCCACGGCAACATGGTTTCAATATTATACTGAAGACCAAGGTCATTTTCCCC +TTCAACATGCATTGAGGTCAATCTTTTCTTTTCACTTTTTACTATGTGTGTCACAGAAGA +TGAAACTATGTGCAATATTCGACAACCTTCGTTATCTGATACCATCAGTAACATCTTTAT +ATTCTGGGTATGAGTTGTTAATAGAGAAATTCTTTGAGAGGCCTTTTAAGAGTTCACTGG +ATGTATACCTTTATTCTATTATAAAGTCTCTGTTAATTAGTTTGGCACAAAATAATAAAG +TTCGGTTTTACTCAAGAGTTCGCTTGTTAGGATTGACAGTTGATCATTCTACTGTCGGAG +CAAGTGGTGTTTATCCCTCTTTAATGTCCCGTGTTGTTTATAAACATTATAGAAGCTTAA +TCTCTGAAGCTACAACCTGTTTCTTCTTATTTGAAAAGGGTTTGCATGGGAATTTACCGG +AAGAGGCTAAGATACATCTTGAAACCATCGAATGGGCTCGAAAGTTTCAGGAGAAAGAGA +AACAATATGGTGATATTCTTTTAAAGGAAGGCTATACGATTGAATCTGTAATTAACGGAG +AAGTTAATGTAGAACAACAGCTCTTTTGTCAAGAGGTGTCGGAGCTAAGTGCACAGGAAC +TCAACAAATATCTACAAGCAAAATCTCAAGTTTTATGTGCTAATATCATGAATAAGCACT +GGGATAAACCATATTTTAGTCAAACACGCAATATCAGTCTTAAGGGAATGTCCGGTGCAT +TGCAAGAAGATGGGCATTTAGCTGCTAGTGTAACACTAATTGAAGCAATTAGATTTTTAA +ATAGATCACAGACCAATCCAAATGTTATTGATATGTATGAGCAAACTAAACAATCAAAGG +CACAAGCTAGGATTGTCAGGAAGTACCAGAGAACAGAAGCAGATAGAGGATTTTTTATCA +CAACATTACCAACTAGGGTGCGACTAGAGATAATAGAAGATTATTTTGATGCGATCGCAA +AGGTTGTGCCTGAAGAATACATTTCTTATGGTGGGGATAAAAAGGTTCTAAATATTCAAA +ATGCACTAGAAAAAGCACTTAGATGGGCATCTGGAGTATCAGAAATTACAACAAGTACTG +GTAAAAGCATTAAGTTTAAGCGGAAATTAATGTATGTTAGTGCTGATGCAACAAAATGGT +CACCAGGAGACAATTCTGCCAAATTTAGGAGATTTACACAAGCAATATATGATGGTTTAT +CAGATAACAAGTTGAAATGTTGTGTTGTTGATGCATTGCGCAACATTTATGAGACTGAAT +TCTTTATGTCTAGGAAATTACACCGATATATTGATAGTATGGAAGATCATTCAGATGCAG +TTGAAGACTTCTTGGCATTTTTTTCAAATGGAGTCTCAGCTAACGTAAAGGGAAATTGGC +TTCAAGGAAATTTAAATAAATGCTCATCGTTATTTGGTGCTGCTGTCTCATTACTTTTTC +GGGAGGTCTGGAAACAATTATTTCCAGAATTAGAATGTTTTTTTGAATTTGCACATCATT +CAGATGATGCATTATTTATTTATGGCTATTTAGAGCCTGAAGATGATGGAACAGATTGGT +TTTTGTATGTGTCACAGCAGATACAGGCAGGAAATTTTCATTGGCATGCTATAAATCAAG +AGATGTGGAAGAGTATGTTTAATCTACATGAACATTTACTGTTAATGGGTTCCATTAAAG +TGTCACCTAAGAAGACAACAGTTTCACCTACTAATGCAGAATTTCTTTCTACTTTTTTTG +AGGGTTGTGCTGTGTCAATCCCTTTTGTTAAAATATTACTAGGTTCATTATCAGATCTTC +CTGGGTTAGGTTTCTTTGATGATTTAGCAGCAGCACAGAGTAGATGTGTAAAGTCATTAG +ATTTGGGTGCTTGCCCACAATTAGCTCAACTAGCGATAGTGTTATGCACAAGCAAAGTTG +AGAGGTTGTATGGTACTGCTGATGGAATGGTAAACTCTCCAACAGCATTCCTTAAGGTAA +ATAAAGCACATGTACCAGTACCACTTGGTGGTGATGGCTCAATGTCTATTATGGAACTTG +CAACAGCTGGTTTTGGAATGGCAGATAAAAATATTCTAAAAAATGCATTCATGTCTTATA +AGCATACTCGTAGAGAAGGTGATAGATATGTATTGGGCTTATTTAAATTTTTGATGTCAT +TAAGTGAGGATGTATTCCAGCACGACCGATTAGGTGAGTTTAGTTTTGTAGGTAAAGTTC +AATGGAAAGTGTTTACTCCTAAAGCTGAATTTGAATTTCATGATCAATTTTCGCACAATT +ATTTATTAGAGTGGACACGTCAACATCCTGTGTATGACTATATTATTCCTAGAAATAGAG +ATAATTTGCTTGTATACCTTGTGAGAAAGTTGAATGATCCTAGCATCATCACAGCTATGA +CTATGCAGTCACCATTGCAACTCCGTTTTCGTATGCAGGCGAAACAACATATGAAAGTAT +GCCGGTATGAAGGTGAATGGGTCACATTCAGGGAGGTACTTGCTGCAGCTGATAGTTTCG +CCACAAGTTACCAGCCTACTGAAAGGGACATGGATCTTTTTAATACACTTGTAAGTTGTA +CATTCTCTAAAGAGTATGCTTGGAAAGACTTTTTAAATGAAGTAAGGTGTGAGGTCTTAA +CAACAAGACATGTACATAGACCTAAAATTGCTAGGACATTCACTGTTAGGGAAAAGGACC +AGGCTATACAAAATCCAATAAATTCTGTGATTGGCTATAAGTATGCTCTCACAGTAGATG +AAGTCAGTGATGTCCTTGATAGTGCATTCTTCCCAGAATCTTTATCCGCAGACTTACAGG +TTATGAAGGATGGGGTTTATAGGGAATTAGGGCTTGATATAAGTTCTCCTGAGGTTTTAA +AACGCATAGCACCATTATTATATAAGGCAGGAAGGTCACGTGTTGTTATTGTGGAAGGAA +ATGTAGAGGGGACAGCTGAGTCAATCTGTAGTTATTGGCTTAAGACAATGTCACTGATTA +AAACAATCAGAGTAAGACCTAAGAAGGAAGTACTGAAAGCTATGTCTTTATATAGTGTTA +AGGAAAATATTGGATTGCAGGACGATATTGCAGCAACTCGATTGTGCATAGAAATCTGGA +GGTGGTGTAAGGCAAATGAACAGGATGTTAAAGAATGGCTAACATCTTTGTATTTTGAAA +AACAAACATTGATGGATTGGATAGAAAGGTTTAGAAGAAAAGGAGTTGTGCCTATTGATC +CTGAGATACAATGTATTGGCCTGCTCTTATATGATGTGTTAGGCTATAAAAGTGTGTTAC +AAATGCAAGCAAACCGAAGAGCCTATTCGGGCAAGCAGTATGATGCATACTGTGTGCAAA +CGTATAATGAGGAGACCAAACTATACGAAGGTGACCTCCGCGTCACTTTCAATTTTGGCC +TAGACTGTGCAAGATTAGAAGTCTTTTGGGATAAAAGGGAGTATATTTTAGAGACATCTA +TTACCCAGCGACATGTATTACGGTTGTTGATGGAAGAGGTGTCACAAGAATTAATTAGAT +GTGGAATGAGATTCAAAACAGAACAAGTCAATCAAACTAGGAGCTTAGTGTTATTTAAAA +CAGAGGCTGGTTTTGAATGGGGTAAGCCTAATGTGCCATGTATTGTATATAAACACTGTG +TTTTGAGAACTGGACTTCGTACAAAACAGCCAATTAATAAAGAGTTTATGATAAATGTAC +AAAGTGATGGGTTCCGTGCAATAGCACAGATGGATATTGAAAGTCCACGGTTCTTGTTGG +CACATGCGTATCATACATTACGTGATATTAGGTATCAAGCAGTACAGGCAGTAGGGAATG +TATGGTTTAAAACAGAACAGCACAAACTATTTATTAACCCAATCATATCATCAGGACTCT +TAGAAAATTTTATGAAAGGCTTACCTGCTGCCATACCTCCTGCTGCATATTCTCTAATAA +TGAATAAGGCTAAAATCTCTGTGGATTTGTTTATGTTCAATGAACTATTAGCACTTATAA +ATAGGAATAATATTCTCAACCTTGATGGGATTGAAGAAACATCTGAAGGTTATAGTACTG +TGACATCAATGTCTAGCAAGCAGTGGTCTGAAGAGATGAGTTTAATGTCTGATGATGATA +TCGATGACATGGAGGATTTCACTATAGCATTAGATGATATTGACTTTGAACAAATAAATT +TAGAAGAGGATATACAGCATTTTCTGCAGGATGAATCAGCATATGTTGGTGATTTATTAA +TTCAGACAGAGGACATTGAAGTTAAAAAGATACGTGGGGTGACAAGAGTATTAGAACCAG +TTAAGCTATTAAAAAGTTGGGTTTCTAAAGGTCTTGCTATAGACAAAGTATACAATCCCA +TTGGGATAATCCTAATGGCAAGATACATGTCAAAAACATACAATTTCAGTTCAACACCTC +TTGCACTACTAAACCCATATGACTTGACAGAGCTTGAAAGTGTTGTAAAGGGATGGGGAG +AAACTGTAAATGATCGATTTAAAGATTTAGATGTTGAGGCACAAGCTGTTGTTAAAGAGA +AAGGTGTACAACCAGAAGATGTACTCCCTGATTCATTATTCTCTTTCAGGCATGTTGATG +TTCTGCTGCGAAGGTTGTTCCCGCGTGACCCTGTCTCAACAT +>OQ092243 +AGTTTAGAAAAATGGAAAAATATAGAGAGATTCATCAGAGAGTTAGGGAACTTGCTCCTG +GAAGTGCATCAGCATTAGAGTGTATGGATTTGCTTGATAGACTTTATGCTGTAAGACATG +ACTTGGTTGATCAGATGATAAAGCATGATTGGTCAGACAATAAGGATATTGAACGCCCTA +TAGGCCAGGTTCTTCTTATGGCAGGCATACCAAATGACATTATACAAGGCATGGAAAAAA +AGATAATACCAAATAGTCCCACAGGCCAGGTTCTAAAGAGCTTTTTTAGGATGACACCTG +ACAATTTCAAAATAACAGGAAATTTAATTGAGTTCATAGAGGTCACCGTTACAGCAGATG +TATCTCGGGGGATTAGAGAAAAGAAGATAAAGTATGAAGAAGGTCTCAAATTTGTTGAAA +GTCTACTTGAAACTGAAGCACGGAAAGGTAACCTAACACAAGTATACAGGATAACTTTCT +CTGTGGTGGCAGTCAAGACTGATGGATCAAATATTTCCACACAATGGCCCAGTCGAAGAA +ATGATGGTGTTGTACAGCACATGCGCTTAGTCCAGGCTGACATAAACTATGTTCGAGAAC +ACCTAATTAGAGTTGATGAGAGGGCATCCCTTGAGGCAATGTTCAACTTGAAATTTCATG +TCTCTGGACCAAAGTTGAGGTATTTTAATGTTCCTGATTATAGGCCACAACAACTTTGTA +ATCCTAGGATAGACAACCTTATACATTATTGCAAGAATTGGTTAACAGAAGAACATAAAT +TTGTATTCAGGGAGGTTACAGGGGCTGCTGTGATCCATACATTTGAAGAGCATGAGCAGG +TGCATTTGAATAAGTATAATGAGTCGAGGAAGCCTCGAAATTTTTTACTAATTCAATTAA +CAGTACAAGGGGCCTACCTCCCTTCTACAATAAGTTCTGACCAGTGTGATACAAGGATAG +GTTGTTTAGAGATATCAAAAAACCAACCTGAGACACCTATTCAGATGCTTGCTTTAGATA +TAGCATTTAAATATTTAAGTCTTACAAAGGATGAACTCATAAATTTTTATAGTCCTAGGG +TGCACTTTCAAGCAAGTTCAAATGTAAAAGAACCAGGAACAATAAAATTAGGCCTGTCTC +AATTGAATCCGTTATCTAAATCAGTATTAGATAATGTTGGTAAACATAAAAAAGATAAGG +GCCTATTTGGTGAAGTCATTGAAAGCATCAATATTGCTAGTCAAATACAAGTTAATGCTT +GTGCTAAAGTTGTGGAGCAGATTCTTTCAAATTTAGAAATTAACATCGGGGAAACAAACA +CAGGTATGCCATCCCCACATAAAACCACAGGTGTAGATGAGTTGCTCAATAAGTTCTATG +ATAATGAAATCGGTAAGTATATGTTATCCATTCTCAGAAAAACAGCAGCCTGGCATATTG +GTCATCTTGTTAGGGACATCACAGAAAGTCTTATTGCTCATTCAGGGTTGCGTAGATCTA +AATACTGGTCGGTTCATGCATATGATCATGGAAATGTTATCTTATTTATCTTACCATCAA +AGTCATTGGAGGTGGTAGGTTCATACATAAGATATTTTACTGTCTTTAAGGATGGTATAG +GTCTAGTTGATTCAGACAATATTGACTCTAGAGTAGATATTGATGGGGTTGTATGGTGTT +ATTCAAAAGTAATGAGTATTGATTTAAACCGATTATTGGCCCTTAATATAGCATTTGAAA +AATCTCTCCTAGCGACAGCAACATGGTTTCAGTATTATACAGAGGATCAAGGACACTTTC +CCCTACAGCATGCATTGAGATCCGTGTTTTCTTTTCATCTTCTACTATGTATGTCTCAAA +AGATGAAACTGTGTGCGATATTTGATAACTTAAGGTACTTAATACCATCTGTGACATCTT +TGTATTCAGGTTACGAATTACTAATTGAGAAGTTTTTTGAAAGACCATTTAAGAGCTCAT +TAGATGTATACCTATATTCAATAATAAAGTCTTTGCTAATAAGCCTTGCACAAAACAATA +AAGTCCGGTTCTATTCTAAAGTGAGACTGCTGGGTCTAACAGTTGATCATTCTACTGTTG +GTGCAAGTGGAGTGTATCCCTCTTTAATGTCCAGAGTTGTTTATAAGCATTATAGGAGTC +TGATATCAGAAGCCACAACCTGTTTTTTCTTATTTGAAAAAGGGCTTCATGGAAATCTCC +CGGAGGAAGCAAAAATACACTTGGAGACTATTGAATGGGCAAGAAAGTTTCAGGCCAAAG +AAGCAAAATATGGGGATATCCTTCTAAAGGAAGGCTATACAATAGAGTCAGTAATAAATG +GAGAAGTGATAGTAGAACAACAGCTATTTTGTCAAGAGGTGTCAGAATTAAGTGCACAGG +AGCTTAATAAATATTTGCAGGCTAAATCACAAGTCTTATGTGCCAACATCATGAACAAAC +ATTGGGACAAGCCTTATTTTAGTCAAACCCGTAATATCAGTCTAAAAGGCATGTCTGGTG +CCCAGCAAGAAGATGGTCATCTAGCTGCTAGTGTCACTTTAATAGAGGCAATACGGTTCT +TGAATAGGTCACAGACTAACCCAAATGTTATTGATATGTATGAACAGACAAAACATAGCA +AGGCTCAAGCTAGGATAGTTAGGAAATATCAAAGGACAGAAGCAGATAGAGGGTTTTTTA +TAACAACACTACCAACAAGGGTAAGGTTGGAGATAATTGAAGATTATTTTGATGCAATAG +CAAAGGTTGTCCCTGAAGAATATATATCTTATGGTGGGGATAAAAAAATATTAAATATAC +AGAATGCTCTAGAAAAGGCACTTAGGTGGGCATCAGGTATGTCTGAAATAACCACTAGTA +CAGGCAAAGTGATCAAATTTAAGCGTAAACTAATGTATGTTAGTGCTGATGCTACAAAAT +GGTCACCTGGGGATAATTCGGCAAAGTTTAGGAGATTCACACAGGCAATTTATGATGGTT +TGTCTGACAATAAACTAAAGTGTTGTGTTGTTGATGCTATAAGAAATATATATGAAACAG +AGTTTTTTATGTCCCGGAAGCTACATCGATATATTGATAGCATGGATGAGCATTCAGATG +CTGTTAACGATTTTTTAGCATTCTTTTCTGGTGGCGTTTCTGCTGCTGTTAAAGGTAATT +GGTTGCAGGGTAATCTAAATAAATGTTCATCACTATATGGTGCTGCAATATCTCTCCTGT +TTAGAGAGGTGTGGAAGCAGCTGTTTCCAGAATTAGAATGCTTTTTCGAATTTGCTCACC +ACTCAGATGATGCATTATTTATATATGGTTATCTGGAACCTGAGGATGATGGAACAGATT +GGTTTCTCTATGTATCTCAACAAATACAGGCAGGAAATTATCACTGGCATGCAATTAACC +AAGAAATGTGGAAAAGTATGTTTAACCTACACGAGCATCTTCTTCTAATGGGTTCCATTA +AAGTTTCACCTAAGAAAACAACTGTTTCACCAACAAATGCTGAATTTTTATCCACATTCT +TCGAAGGTTGTGCTGTATCAATACCATTTGTTAAGATTTTGCTAGGTTCATTATCAGATT +TGCCTGGTTTAGGTTTTTTTGATGATCTAGCTGCTGCACAAAGTAGGTGTGTAAAGGCAT +TAGACTTAGGAGCATGCCCTCAGCTTGCTCAATTAGCCATAGTGCTTTGTACAAGTAAAG +TAGAGAGATTGTATGGGACTGCTGATGGTATGGTTAACTCACCTACAGCCTTTTTAAAAG +TACAGAAGTCACATGTCCCAATACCACTTGGGGGTGATGGATCCATGTCTATAATGGAAC +TAGCTACAGCGGGTTTCGGTATGGCTGATAAGAACATATTAAAGAATGCATTTATCTCAT +ATAAACACACTCGTCGAGATGGTGATAGGTACATTTTAGGTCTTTTTAAGTTCTTAATGT +CATTAAGTGAAGATGTGTTTCAACATGATAGGCTTGGTGAATTCAGCTTTGTAGGTAAAG +TCCAATGGAAGGTGTTTACTCCCAAAGCAGAGTTTGAGTTCCATGATCAATTTTCACATA +GTTACTTAGGGGACTGGACAAAACAACACCCAGTATATGACTATATAATCCCAAGAAATA +GGGATAATTTACTTGTTTATCTTGTGAGGAAGTTAAATGATCCTAGCATTATTACAGCAA +TGACAATGCAGTCTCCACTACAACTTCGATTCCGTATGCAGGCGAAACAGCACATGAAAG +TATGTAGGTATGAAGGTGAATGGGTCACGTTTAGGGAAATACTGGCAGCAGCTGACAGCT +TTGCCACAGTTTATCAACCAAGTGAGAGAGATATGGATTTGTTCAATACACTGGTGAGCT +GTACATTCTCAAAGGAATATGCATGGAAGGACTTTCTAAATGAAGTACGATGCGAGGTAT +TAACAACAAGGCATGTGCATAGGCCGAAAATTGCAAGAACATTCACTGTCAGGGAAAAAG +ATCAGGCAATCCAAAATCCCATTAATTCAGTGATAGGCTATAAGTATGCGATGACTGTTG +ATGAAATCAGTGATGTTCTAGATAGTGCATTCTTCCCTGAATCCTTGTCAGCTGACTTGC +AGGTTATGAAAGATGGGGTTTATCGAGAGCTTGGATTGGATATAAGCTCTCCAGAGGTCT +TAAAGCGCATAGCTCCATTACTATATAAAGCTGGGCGATCACGTGTGGTAATAGTTGAAG +GAAATGTTGAAGGCACAGCCGAGTCAATTTGCAGTTACTGGCTAAAGGCCATGTCATTAA +TTAAGACAATTAGGGTTCGACCAAAGAAAGAGGTTTTGAAAGCTATGTCTTTGTATAGCG +TTAAAGAAAATATAGGCCTACAAGATGATATTGCGGCTACACGATTGTGTATAGAGATTT +GGCGATGGTGTAAGGCTAATGACCAAGATGTTAGAGAGTGGTTAACATCGCTGTATTTTG +AGAAACAAACACTCATGGATTGGGTTGAAAGGTTCAGGAGAAAGGGGGTTGTTCCTATTG +ACCCTGAAATTCAATGCATTGGCTTATTGTTATATGATGTTCTAGGATATAAGAGTGTTT +TACAAATGCAAGCAAACCGTAGAGCTTATTCCGGCAAACAATATGATGCATATTGTGTTC +AAACATATAATGAAGAAACAAAGTTGTATGAAGGTGACCTCCGTGTAACCTTTAACTTTG +GTTTGGATTGTGCACGACTTGAGGTGTTTTGGGATAAGAAGGAATACATCCTAGAAACTT +CTATTACCCAAAGACATGTCTTGAGGCTTCTGATGGAAGAAGTATCTCAGGAGTTAGTTC +GATGTGGTATGAGATTCAAAACAGAGCAAGTCAATCAAACAAGAAGTTTAGTGTTATTTA +AAACAGAATCTGGATTTGAATGGGGAAAACCAAATGTCCCCTGCATTGTGTATAAGCATT +GTGTATTACGGACAGGTCTACGCACGAAACAGCCAATTAATAAAGAGTTCATGATTAATG +TCCAATCTGATGGATTCCGAGCAATAGCTCAAATGGATATCGAAAGTCCTAGATTTTTAT +TAGCCCATGCATATCATACGTTGCGTGACATTCGCTATCAAGCTGTTCAGGCAGTGGGAA +ATGTTTGGTTCAGGACGGAGCAGCATAAACTTTTTATTAATCCAATAATTTCTACAGGCT +TATTAGAAAACTTTATGAAGGGCTTGCCTGCAGCTATACCTCCTGCAGCATACTCATTAA +TAATGAATAAGGCTAAAATATCTGTAGATTTATTCATGTTTAATGAACTATTAGCTCTTA +TTAATAAAAATAACATCCTCAATTTAGATGGGATCGAAGAAACATCTGAGGGTTATAGTA +CAGTTACATCCATGTCAAGTAAACAATGGTCTGAAGAGATGAGTTTAATGTCAGAAGATG +ATATAGATGACATGGAAGATTTCACAATAGCACTGGATGATATTGACTTTGAACAGATTA +ATCTTGAGGAGGACATACAGCACTTTCTCCAGGATGAATCAGCTTATGTTGGTGATTTGC +TAATTCAAACTGAAGATATTGAGGTTAAAAGGATACGTGGGGTCACTAGGGTTTTAGAAC +CTGTGCGGTTATTAAAAAGTTGGGTGTCAAAGGGCTTAGCGATTGATAAAGTCTACAACC +CTGTTGGGATAATTCTTATGGCTAGATATATGTCAAAAACATATAACTTTAACTCAACAC +CCTTAGCATTATTAAATCCTTATGATCTCACAGAGTTAGAAAGTGTAGTTAAGGGCTGGG +GTGAGACAGTCAATGATAGATTTAAAGAATTAGATACTGAGGCACAAACAGTTGTAAAAG +AGAAAGGTGTCCAACCTGAGGATGTCCTTCCTGACTCTTTATTTTCATTTAGGCATGTAG +ATGTTCTCTTGCGTAGGCTTTTTCCACGTGATCCTGTGTCTAAGTTTTATTGAACAGAAT +TCTTATCTTGTTTATCCATTATGTAATGTTTAGTGTTCTTTTCCCGGAGCGGGTCGCA +>PP003837 +AGTAGACTCCGGGATAGAAAAAGTTAAAAAAATGGAAAAGTACAGAGAGATTCATCAAAG +GGTTAGGGAGTTGGCACCAGGAAGTGCTTCAGCATTGGAGTGTATAGACCTATTGGACAG +GCTTTATGCTGTAAGACATGACCTGGTTGATCAGATGATAAAACATGATTGGTCTGACAA +TAAGGACATAGAACGCCCTATAGGTCAAGTCCTCCTTATGGCCGGCATACCTAATGATGT +TATACAAGGTATGGAGAAGAAGATAATCCCAAACAGTCCTACAGGTCAGATCCTTAAAAG +TTTCTTCAGAATGACTCCTGATAATTTCAAAATAACAGGAAACCTCATTGAGTTTATAGA +GGTTACTGTTACAGCTGATGTGTCACGAGGGATCCGTGAAAAGAAGTTGAAATATGAGGA +AGGTCTTAAGTTTGTTGAGAGTCTACTTGAGGTTGAGGCTAGGAAAGGCAATCTGACACA +GGCATATAGGATAACATTCTCAGTAGTGGCAGTTAAAACAGATGGGTCTAATATTTCTAC +ACAGTGGCCTAGTCGTAGAAATGATGGTGTTGTTCAGCACATGCGCCTAGTCCAGGCTGA +CATTAATTATGTGCGGGAACACCTGATAAAGACAGATGAGAGGGCATCCCTAGAGGCAAT +GTTCAATTTAAAATTTCATGTTTCAGGTCCCAAGCTAAGGTATTTTAATATCCCTGATTA +TAGGCCCCAGCAACTTTGTGAGCCTAAGATTGATAATCTCATACAGTATTGCAAAAATTG +GTTGACAGAAGAGCATAGATTTGTATTTAAAGAGGTAACTGGGTCCAGCGTCATTCAAGC +CTTTGAAGGACATGAGAAGATGCACTTGGAGAGGTATAATGAGTCAAGAAAGCCTAGAAA +TTTTTTACTGTTACAGCTCACAATACAAGGGGCCTACCTCCCTTCCACAATTAGTTCTGA +CCAGTGTGATACAAGGATAGGCTGCCTAGAGATATCAAAGAATCAACCTGAAACTCCCAT +TCAAATGCTTGCTCTAGATATTGCTTATAAATACTTGAGTCTTACTAAAGATGAACTTGT +GAACTTCTATAGCCCTAAAGTACATTTCCAGGCAAGCCAAAATGTCAAGGAACCAGGTAC +AATAAAGCTAGGTCTCTCACAGTTAAACCCATTGTCAAAGTCGATTTTAGATAATGTTGG +TAAGCACAAAAAGGATAAAGGACTTTTTGGTGAAATCATAGAGAGTATAAACATAGCTAG +TCAGATACAAGTTAATGCATGTGCTAAAGTTGTAGAGCAGATCTTATCAAATTTGGAAAT +AAATGTTGGGGAGACAAATACAGGCATGGCATCCCCACATAAGACAACAGGGGTTGATGA +ATTGTTGAACAAGTTCTATGACAATGAGTTGGGGAAGTATATGTTGTCAATACTAAGGAA +AACAGCAGCCTGGCATATAGGCCACCTTGTTAGAGATATCACAGAGAGCCTTATCGCACA +TGCAGGCTTGCGTAGGTCCAAGTATTGGTCGGTGCATGCATATGACCATGGTAATGTGAT +ACTTTTTATATTGCCTTCAAAGTCATTGGAAGTTGTTGGTTCTTACATAAGATACTTCAC +TGTATTTAAGGATGGTATAGGTCTAGTTGACTCTGATAATATTGACTCTAAGGCTGATAT +TGACGGTGTGATATGGTGTTATTCTAAGGTGATGAGTATAGATTTAAATAGACTCTTGGC +ATTAAACATAGCATTTGAGAAGTCACTCCTTGCAACTGCTACATGGTTTCAATATTATGC +AGAAGACCAGGGACACTTTCCACTACAGCATGCACTTAGATCTGTCTTTTCCTTTCATTT +CTTATTATGCATGTCACAGAAGATGAAGCTTTGTGCAATATTTGATAACTTGAGGTACCT +TATACCATCTGTCACATCTCTTTATTCTGGTTATGAACTGTTGATTGAGAAGTTTTCTGA +AAGGCCATTCAAGAGTTCTTTGGATGTCTATTTATACTCTATAATAAAATCATTATTAAT +AAGTCTTGCACAGAACAATAAGGTACGGTTTTATTCAAAAGTGAGATTATTAGGTTTAAC +AGTTGATCATTCTACTGTTGGTGCAAGTGGGGTGTATCCTTCACTTATGTCAAGAGTTGT +TTATAAACACTATCGGAGTTTGATTTCTGAAGCAACAACCTGTTTTTTTCTGTTTGAAAA +GGGTCTTCATGGTAATCTTCCTGAGGAAGCAAAGATACACTTAGAAACCATTGAATGGGC +AAGAAAATTTCAGGAAAAGGAGGATAAATACGGTGATATACTTTTAAAAGAAGGTTACAC +AATAGAATCAGTCACAAGTGGGGAAGTAAAGGTAGAGCAGCAACTTTTCTGTCAAGAAGT +TTCAGAGTTAAGTGCTCAAGAGCTTAACAAGTACCTACAAGCTAAATCACAGGTGTTGTG +TGCTAATATTATGAATAAGCACTGGGATAAACCTTATTTTAGCCAAACCCGCAATATAAG +CTTAAAAGGAATGTCAGGAACACAGCAAGAAGATGGTCATTTATCTGCAAGTGTGACTTT +AATAGAGGCAATAAGGTTTTTAAATAGATCACAAACAAACCCAAATGTCATAGATATGTA +TGAGCAGACAAAGCACAACAAGGCACAGGCTCGAATTGTTAGAAAATATCAAAGAACAGA +AGCCGACAGGGGATTTTTTATCACAACATTACCCACGAGAGTCAGATTGGAGATCATTGA +GGATTATTTCGATGCAATAGCAAAAGTTGTCCCTGAGGAATATATCTCTTATGGCGGAGA +TAAGAAGATCTTAAATATACAGAATGCACTTGAAAAAGCACTGAGGTGGGCTTCAGGGAT +GTCAGAAATTACCACCAGCACAGGTAAAGTCATTAAATTTAAACGCAAGTTGATGTATGT +CAGTGCAGACGCAACAAAGTGGTCACCTGGTGATAACTCAGCTAAATTCAGACGATTCAC +ACAAGCAATATATGATGGGCTTTCTGATGATAAGTTAAAATGTTGTGTTGTAGATGCCAT +AAGGAATATATATGAGACAGAATTTTTTATGTCAAGAAAACTCCACCGATATATAGATAG +CATGGATGAACACTCAGATGCTGTGAAGGATTTCTTAGCTTTCTTTTCTGGAGGAGTTTC +TGCAGTTGTCAAAGGGAACTGGCTACAAGGAAATCTTAATAAATGCTCATCTTTGTTTGG +TGCAGCTGTATCATTATTATTTAGAGAAGTTTGGAAGCAATTGTTTCCAGAGTTAGATTG +CTTTTTTGAGTTTGCCCATCATTCTGATGATGCCTTATTTATATATGGATATTTAGAACC +AGAAGATGATGGCACAGATTGGTTTTTGTATGTCTCTCAACAAATACAAGCTGGCAATTA +TCACTGGCATGCTATTAACCAAGAGATGTGGAAAAGTATGTTTAACCTGCATGAGCATTT +ACTATTAATGGGTTCTATCAAGGTTTCTCCAAAAAAGACAACTGTTTCACCGACAAATGC +TGAATTCCTATCAACATTCTTTGAAGGGTGTGCTGTATCAATACCATTTGTGAAAATATT +GTTGGGTTCACTATCAGACTTACCTGGCCTTGGGTTCTTTGATGACCTGGCAGCTGCACA +GAGCAGATGTGTTAAATCACTAGATCTAGGTGCGTGCCCGCAGCTTGCACAATTGGCTAT +AGTCTTGTGTACTAGTAAAGTTGAGAGGCTGTACGGAACAGCTGATGGTATGGTAAACTC +ACCAACAGCATTCTTAAAAGTACAAAAATCACACGTCCCAATACCATTAGGAGGGGATGG +GTCCATGTCTATAATGGAGTTAGCCACAGCAGGTTTCGGTATGGCTGATAAGAACATATT +AAAGAATGCTTTCATTTCTTTTAGACACACTCGCAGGGATGGTGACAGGTATGTTTTAGG +CCTGTTTAAGTTCTTGATGTCATTAAGTGAAGATGTATTTCAGCATGATAGGTTAGGTGA +GTTTAGCTTTGTGGGCAAAGTGCAATGGAAAGTATTCACTCCAAAGGCTGAATTTGAATT +CCATGATCAATTTTCACACAGTTATTTAGGTGATTGGACACGTCAACATCCAGTATATGA +TTATATCATTCCAAGGAATAGAGACAACTTACTTGTATATCTTGTGAGAAAGTTAAATGA +TCCTAGTATTATAACAGCAATGACTATGCAATCCCCATTACAACTCAGATTTCGCATGCA +GGCAAAACAACATATGAAAGTATGTCGGTATGAAGGTGAATGGGTCACATTTAGAGAAAT +CCTTGCAGCAGCTGATAGTTTTGCTACAGCATATCAGCCAAGTGAAAGGGACATGGACTT +ATTCAACACCTTGGTGAGTTGTACATTTTCAAAGGAATATGCATGGAAAGATTTTCTGAA +TGAGGTGCGATGTGAAGTCTTGACAACTAGACATGTACATAGACCAAAGATTGCGCGGAC +ATTTACTGTTAGAGAAAAGGATCAGGCAATCCAAAATCCAATCAATTCAGTGATTGGATA +CAAGTATGCAATGACTGTTGATGAAATAAGTGATGTTTTAGACAGTGCATTCTTCCCTGA +ATCACTTTCAGCAGATTTACAGGTGATGAAAGAAGGAGTATACCGGGAACTTGGGTTAGA +TATCAGTTCCCCTGATGTTTTAAGGCGCATTGCACCTTTATTATATAAGGCAGGGAGATC +ACGTGTTGTGATAGTGGAAGGAAACGTAGAAGGTACAGCAGAATCAATCTGTAGTTATTG +GCTTAAAGCAATGTCATTGATAAAAACCGTAAGGGTGAGGCCCAAAAAGGAAGTCTTAAA +GGCAATGTCATTGTATAGCATTAAAGAGAATATAGGCTTACAGGATGATATTGCAGCTAC +ACGATTATGTATTGAAGTCTGGAGATGGTGTAAAGCTAATGAACAAGATGTAAGAGAATG +GCTTACATCATTATATTTTGAGAAGCAAACACTTATGGATTGGGTAGAACGTTTCAGACG +GAAAGGGGTAGTCCCTATAGACCCTGAGATACAGTGTATTGGTTTATTGTTATATGATGT +TTTAGGATATAAAAGTGTTTTACAGATGCAGGCAAATAGACGGGCTTATTCAGGAAAACA +GTATGATGCTTATTGTGTTCAAACATACAATGAAGAAACTAAGTTATATGAAGGAGACCT +ACGTGTTACATTCAATTTCGGTTTGGATTGTGCTAGGCTTGAGATCTTCTGGGATAAGAA +AGAATATATACTAGAAACCTCCATTACTCAGAGGCACGTGTTACGTCTATTGATGGAAGA +AGTGTCTCAGGAGTTAGTCCGTTGCGGGATGCGATTTAAAACAGAACAGGTAAACCAGAC +ACGAAGCCTAGTGTTATTCAAGACAGAGGCTGGTTTTGAGTGGGGAAAACCAAACGTACC +ATGTATAGTCTATAAGCATTGTGTGTTACGAACAGGGTTGAGGACCAAACAGCCTATCAA +TAAAGAGTTTATGATTACTGTTCAGGCCGATGGTTTCCGTGCAATAGCACAGATGGACAT +GGAAAGTCCTAGATTTTTACTTGCACATGCTTATCATACATTACGTGATATTCGCTACCA +GGCTGTTCAGGCTGTTGGTAATGTTTGGTTTAAAACAGAACAACATAAACTATTTGTAAA +TCCGATAATCTCCTCTGGACTTCTAGAGAATTTCATGAAAGGTTTACCTGCTGCCATACC +CCCTGCAGCTTATTCTTTAATTATGAATAAGGCCAAAATATCAGTAGACTTGTTCATGTT +TAATGAGCTACTAGCACTTATAAATAAAAATAATATTCTAAACTTGGATGGGATTGAGGA +GACATCTGAAGGTTATAGCACAGTAACATCTATGTCTAGTAAACAGTGGTCTGAAGAAAT +GAGTTTAATGTCAGATGATGACATTGACGATATGGAAGACTTCACAATAGCCTTGGATGA +TATTGATTTTGAGCAAATAAATCTTGAAGAGGATATCCAACATTTCCTCCAGGATGAGTC +TGCTTATGTAGGAGACTTGTTAATTCAAACAGAAGACATTGAAGTAAAGAAAATACGTGG +TGTAACTAGAGTATTAGAACCTGTACGTTTATTAAAAAGTTGGGTTTCGAAGGGTCTAGC +TATCGACAAGGTATACAATCCTGTAGGGATAATTCTTATGGCAAGGTATATGTCAAAGAC +ATATAATTTTAATTCAACACCATTGGCCCTACTAAACCCGTATGACCTGACAGAGTTAGA +GAGTGTTGTTAAAGGTTGGGGAGAAACAGTCAATGATAGGTTCCAGGAGTTAGACGTTGA +GGCTCAGACAGTTGTGAGGGAGAAGGGTGTTCAGCCTGAGGATGTTTTACCAGATTCTTT +GTTCTCTTTTAGACATGTGGATGTTCTCTTGCGTAGGCTTTTTCCCCGTGATCCTGTGTC +CACATTCTATTAAGTGGATTTTATATCTTATTTATACATCATGTAATATTTAGTGTTCTT +TTCCCGTGATCCTGTGTCCACATTCTATTAAGTGGATTTTATATCTT +>PP151170 +CTCCGGGATAGAAAAAGTTAGAAAAATGGAAAAGTACAGAGAGATTCATCAGAGGGTTAG +GGAGCTGGCACCAGGGAGTGCATCAGCATTAGAGTGTATAGATTTGCTGGATAGGCTCTA +TGCTGTGAGACATGATTTAGTTGATCAAATGATCAAACATGATTGGTCTGACAACAAAGA +CATTGAACGCCCAATAGGCCAAGTCCTTCTCATGGCAGGGATCCCAAATGACATCATACA +AGGTATGGAGAAAAAGATAATTCCAAATAGCCCAACAGGCCAAATTCTAAAAAGTTTCTT +TCGAATGACCCCTGATAATTTCAAGATAACAGGGAATCTCATTGAGTTTATTGAGGTTAC +TGTCACAGCTGATGTATCACGAGGGATTCGAGAGAAAAAGATGAAATATGAAGAAGGCCT +TAAATTTGTTGAGAGTCTACTCGAAATTGAAACAAGGAAAGGAAATTTAACACAGGTTTA +TCGGATTACCTTCTCAGTAGTAGCAGTCAAAACAGATGGATCAAATATATCAACTCAATG +GCCAAGTCGTAGAAATGACGGTGTTGTCCAACACATGCGCCTTGTCCAGGCTGATATTAA +TTATGTGAGAGAACATTTGATTAAAACAGATGAAAGGGCATCATTAGAGGCTATGTTTAA +TTTAAAGTTTCATGTCTCAGGTCCAAAGCTAAGGTATTTTAATATTCCTGATTATAGACC +ACAGCAGCTCTGTGAGCCTAAAATTGATAATCTCATACATTATTGTAAAAATTGGTTGAC +AGAAGAGCACAAGTTTGTATTCAAGGAAGTCACAGGCACAAATGTTATTCAGGCATTTGA +AGGGCATGAGCAGGTACATATGGAGAAGTACAATGAATCGAGAAAACCCCGTAATTTTTT +ACTCCTACAGCTAACTGTTCAAGGAGCTTATCTTCCTTCGACAATTAGTTCTGATCAGTG +TGATACAAGGATAGGCTGTTTAGAAATATCAAAGAATCAACCTGAGACACCTATTCAAAT +GCTTGCTTTAGATATTGCTTTTAAGTATTTGAGTCTTACCAAAGATGAGCTTGTTAACTT +CTATAGTCCCAAAGTGCACTTCCAGGCAAGCCCTAATGTGAAGGAACCAGGAACTATGAA +ATTAGGTCTATCTCAGCTGAACCCATTGTCAAAGTCAATACTCGATAATGTAGGGAAGCA +TAAAAAGGACAAAGGGCTATTTGGTGAGGTCATTGAGAGTATCAATATAGCTAGTCAAAT +ACAAGTTAATGCATGTGCTAAGGTCGTAGAGCAAATTCTCTCTAACCTTGAAATTAATAT +AGGGGAAATAAATACAGGGATGCCTGCACCGCATAAGACTACAGGAGTTGATGAACTGCT +TAATAAATTTTATGATAATGAACTAGGAAAATATATGCTATCTATATTGAGAAAAACAGC +TGCTTGGCATATTGGTCATTTAGTCAGGGATATAACTGAGAGCCTTATTGCACATGCAGG +GTTGCGTAGATCAAAATACTGGTCAGTTCATGCATATGATCATGGGAATGTTATACTGTT +TATCTTACCTTCAAAGTCTTTAGAGGTTGTTGGTTCTTATATTAGGTACTTTACTGTTTT +CAAAGATGGTATTGGTTTAGTTGATTCAGACAACATTGACTCCAAAGCAGATATTGATGG +GGTTATATGGTGCTATTCCAAGGTGATGAGTATTGATCTGAATCGATTACTAGCTCTGAA +TATAGCATTTGAAAAATCACTTCTAGCAACTGCAACATGGTTTCAGTACTATACAGAAGA +TCAAGGGCATTTTCCCTTACAGCATGCGTTACGATCAGTGTTTTCTTTCCATTTTTTATT +ATGTATGTCACAGAAGATGAAACTTTGTGCAATATTCGATAATCTAAGATACCTAATTCC +ATCTGTAACATCGCTTTACTCTGGCTATGAACTATTAATTGAAAAATTCTTTGAAAGGCC +ATTCAAAAGTTCCCTAGATGTATACCTTTATTCCATTATTAAATCACTGCTAATTAGCTT +GGCTCAAAATAATAAGGTACGGTTTTATTCTAAGGTACGGCTCTTAGGCTTAACGGTTGA +TCACTCAACTGTTGGTGCAAGTGGGGTATATCCATCTTTGATGTCAAGGGTTGTTTACAA +ACATTATCGGAGTTTAATTTCAGAAGCAACAACCTGTTTTTTCCTGTTTGAGAAGGGTCT +TCATGGAAATTTACCTGAGGAAGCAAAAATCCATTTAGAGACCATAGAATGGGCGCGGAA +ATTCCAGGAAAAAGAAGCTAAATATGGTGATATTCTTTTGAAAGAAGGCTATACAATTGA +ATCAATAACAAATGGGGAAGTGATGGTTGAACAGCAATTATTCTGTCAAGAGGTATCAGA +GCTCTGTGCACAAGAACTCAATAAATATTTACAGGCAAAATCACAAGTTTTGTGTGCTAA +TATCATGAATAAACACTGGGATAAACCCTATTTCAGTCAAACACGCAATATTAGCCTAAA +AGGTATGTCTGGGGCACAGCAAGAAGATGGCCATTTAGCTGCCAGTGTTACCTTAATTGA +GGCAATTCGATTCCTAAATCGATCACAAACAAATCCCAATGTTATAGATATGTATGAACA +AACAAAACATAGTAAGGCACAGGCCAGGATAGTCAGGAAATACCAAAGGACAGAAGCAGA +TAGGGGATTCTTTATAACAACACTACCGACAAGAGTCAGATTAGAGATAATTGAGGACTA +TTTTGATGCAATAGCAAAGGTAGTTCCTGAGGAGTATATATCCTATGGTGGTGATAAAAA +GATATTAAATATTCAGAATGCATTAGAGAAGGCACTTAGATGGGCATCAGGGATGTCAGA +AATAATAACAAGTACAGGTAAAGTTATTAAATTTAAACGTAAATTAATGTATGTGAGTGC +TGATGCTACAAAATGGTCACCAGGAGATAATTCAGCCAAGTTTAGGAGGTTTACACAAGC +TATTTATGATGGGCTCTCTGATAATAAGTTGAAATGTTGTGTTGTAGATGCCATTAGAAA +TATTTATGAAACAGAGTTTTTTATGTCTAGAAAATTGCATAGATATATAGATAGTATGGA +TGAGCACTCAGATGCTGTAAAGGACTTTTTGGCATTCTTTTCTGGAGGTGTGTCTGCTGC +AGTTAAGGGAAACTGGCTTCAAGGGAATTTGAACAAATGTTCATCATTATTTGGTGCTGC +CATTTCATTATTGTTTAGGGAAGTCTGGAAGCAGTTGTTCCCTGAGCTAGAATGCTTTTT +TGAGTTTGCCCACCATTCTGATGATGCTTTATTTATATATGGTTATTTAGAACCTGAAGA +TGATGGCACGGACTGGTTTTTATATGTGTCACAACAAATACAAGCTGGAAATTATCACTG +GCATGCAATAAATCAGGAAATGTGGAAGAGCATGTTTAATTTACATGAGCACCTACTCTT +AATGGGCTCAATTAAAGTTTCTCCAAAGAAAACTACTGTATCACCTACAAATGCTGAATT +TCTATCTACATTCTTTGAAGGTTGTGCTGTGTCAATACCTTTTGTTAAAATACTTTTAGG +TTCTCTCTCAGACTTGCCTGGTTTAGGCTTTTTTGATGATTTAGCTGCTGCTCAAAGTAG +ATGTGTGAAGTCATTAGATCTAGGTGCATGTCCACAACTTGCACAATTAGCCATAGTATT +ATGTACTAGTAAAGTAGAAAGATTATACGGGACAGCTGATGGTATGGTCAATTCCCCTAC +AGCCTTTCTAAAGGTACAAAAGTCACATGTGCCTATACCTCTTGGGGGTGATGGCTCTAT +GTCTATTATGGAGCTTGCCACAGCTGGATTTGGGATGGCTGACAAGAACATATTAAAAAA +TGCATTCATATCATATAAACACACTCGAAGAGAAGGTGATCGGTATGTTCTTGGTTTATT +TAAGTTTTTGATGTCATTAAGTGAAGATGTATTTCAGCATGACAGGTTGGGTGAGTTTAG +CTTTGTGGGTAAGGTCCAATGGAAGGTCTTTACCCCTAAGGCAGAGTTTGAATTTCATGA +TCAGTTCTCAAATAGTTATTTGGGAGACTGGACACGGCAGCATCCTGTTTACGACTACAT +AATTCCAAGAAATAGAGACAATTTACTTGTGTATCTTGTACGAAAACTAAATGACCCTAG +CATTATCACAGCAATGACAATGCAGTCTCCGTTACAACTTAGATTCAGAATGCAGGCAAA +GCAGCATATGAAGGTATGCCGTTATGAAGGTGAGTGGGTAACCTTTAGGGAAATTTTAGC +AGCTGCTGACAGCTTTGCTTCAGGTTATCAACCTAGCGAAAGAGACATGGACTTATTTAA +CACCTTGGTTAGCTGTACATTTTCTAAAGAATATGCATGGAAAGACTTTCTAAATGAAGT +AAGGTGTGAAGTCTTAACTACTAGACATGTCCATAGGCCCAAGATTGCGAGGACCTTCAC +TGTTAGGGAAAAGGATCAAGCAATTCAGAATCCAATTAACTCTGTGATAGGATACAAGTA +TGCCATGACAGTGGATGAAATAAGTGATGTTCTTGACAGTTCATTCTTTCCTGAGTCACT +TTCAGCAGATTTGCAAGTTATGAAAGATGGAGTCTATCGAGAATTAGGCTTAGACATTAG +TTCGCCTGATGTATTAAAGCGTATAGCCCCATTACTATACAAAGCTGGGCGGTCACGTGT +AGTTATAGTAGAAGGAAATGTTGAGGGCACAGCTGAATCAATCTGTAGTTATTGGCTAAA +GGCTATGTCATTGATCAAAACGATCAGAGTTAGACCAAAAAAAGAAGTCCTAAAGGCCAT +GTCATTATACAGCATTAAAGAAAACATAGGCCTACAAGATGATATCGCAGCTACACGATT +GTGTATAGAGATTTGGCGATGGTGTAAGGCTAATAATCAGGATGTTAAGGAATGGTTGAC +ATCATTATATTTTGAGAAACAGACATTGATGGATTGGGTTGAGAGGTTTAGGCGAAAAGG +TGTTGTACCTATTGATCCTGAAATTCAATGTATAGGTTTGCTTTTGTATGATGTTTTAGG +GTATAAGAGTGTCTTACAGATGCAAGCAAATAGGAGAGCATACTCAGGTAAGCAATATGA +CGCATATTGTGTCCAAACATATAATGAAGAAACTAAGTTGTATGAGGGTGATTTACGTGT +AACATTTAACTTTGGATTAGACTGTGCCAGACTTGAAGTCTTCTGGGACAAGAGAGAATA +TATTCTTGAGACATCAATCACTCAACGACATGTATTGAGGTTGCTGATGGAAGAAGTATC +ACAGGAGCTTGTTCGATGTGGTATGAGGTTTAAAACAGAGCAGGTAAATCAGACAAGAAG +CTTAGTGTTATTTAAAACTGAAGCTGGTTTTGAGTGGGGAAAGCCGAATGTTCCGTGTAT +AGTATATAAGCATTGTGTTCTACGGACAGGGTTGCGTACAAAGCAACCTATTAATAAAGA +ATTTATGATAAATGTACAAGCAGATGGTTTTCGTGCAATAGCACAAATGGATGTTGAAAG +CCCGCGATTCCTACTAGCACATGCCTATCACACATTGCGTGATATTCGGTATCAAGCTGT +GCAGGCAGTAGGCAATGTCTGGTTCAAAACAGAACAGCATAAGCTATTTATTAATCCAAT +AATTTCATCTGGGCTCTTAGAAAACTTTATGAAAGGTTTACCTGCAGCAATACCCCCAGC +AGCTTATTCATTGATTATGAATAAGGCAAAGATTTCTGTTGACTTATTCATGTTTAATGA +GTTACTTGCCCTCATAAATAAAAATAATATCCTTAATTTAGATGGGATTGAAGAAACATC +AGAAGGCTATAGCACAGTAACATCTATGTCTAGTAAGCAATGGTCAGAGGAAATGAGTCT +TATGTCAGATGATGATATAGATGATATGGAAGATTTCACTATAGCATTAGATGATATTGA +TTTTGAACAGATAAATTTGGAGGAAGATATACAGCACTTTCTTCAGGACGAATCTGCTTA +TGTCGGTGACTTATTAATTCAGACAGAAGATATTGAAGTTAAAAAGATACGTGGTGTTAC +AAGAGTTTTGGAGCCTGTGCGCCTACTTAAAAGTTGGGTTTCTAAAGGCTTGGCTATTGA +CAAAGTTTATAACCCTGTTGGTATAATCCTCATGGCTAGATACATGTCAAAAACATACAA +TTTCAGCACGACACCATTAGCATTACTAAATCCTTATGATTTAACTGAATTGGAAAGTGT +TGTTAAAGGTTGGGGTGAAACAGTGAACGATAGGTTCCAGGAATTGGATTTGGAAGCACA +AACAATTGTTAGAGAGAAAGGTGTGCAACCGGAAGATGTACTTCCAGACTCATTGTTTTC +TTTTCGGCATGTGGATGTTCTGC diff --git a/data_output/nextstrain/orthohantavirus/andv/l/unreleased/tree.json b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/tree.json new file mode 100644 index 000000000..282720abe --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/tree.json @@ -0,0 +1 @@ +{"version": "v2", "meta": {"title": "Andes Virus L Segment (ANDV)", "updated": "2026-05-12", "build_url": "https://github.com/nextstrain/andv", "data_provenance": [{"name": "Pathoplexus", "url": "https://pathoplexus.org/"}], "maintainers": [{"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}], "display_defaults": {"map_triplicate": false, "color_by": "outbreak", "distance_measure": "div"}, "genome_annotations": {"RdRp": {"end": 6497, "seqid": "defaults/l/reference.gb", "start": 36, "strand": "+", "type": "CDS"}, "nuc": {"end": 6562, "start": 1, "strand": "+", "type": "source"}}, "colorings": [{"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "date", "title": "Collection Date", "type": "categorical"}, {"key": "region", "title": "Region", "type": "categorical", "scale": [["Africa", "#CEB541"], ["Europe", "#E39B39"], ["South America", "#E56C2F"]]}, {"key": "country", "title": "Country", "type": "categorical"}, {"key": "division", "title": "Admin Division", "type": "categorical"}, {"key": "host", "title": "Host", "type": "categorical"}, {"key": "abbr_authors", "title": "Authors", "type": "categorical"}, {"key": "dataUseTerms", "title": "Data use terms", "type": "categorical"}, {"key": "restrictedUntil", "title": "Restricted Until", "type": "categorical"}, {"key": "date_released", "title": "Release Date", "type": "categorical"}, {"key": "length", "title": "Length", "type": "continuous"}, {"key": "INSDC_accession", "title": "INSDC Accession", "type": "categorical"}, {"key": "PPX_accession", "title": "Pathoplexus Accession", "type": "categorical"}, {"key": "institution", "title": "Author Affiliations", "type": "categorical"}, {"key": "totalAmbiguousNucs", "title": "Ambiguous Nucleotides", "type": "continuous"}, {"key": "outbreak", "title": "outbreak", "type": "categorical"}], "filters": ["country", "division", "host", "abbr_authors", "clade_membership"], "geo_resolutions": [{"key": "country", "demes": {"Brazil": {"latitude": -10.3333332, "longitude": -53.1999999}, "Switzerland": {"latitude": 46.8182, "longitude": 8.2275}, "South Africa": {"latitude": -28.8166235, "longitude": 24.991639}, "Netherlands": {"latitude": 52.1326, "longitude": 5.2913}, "Paraguay": {"latitude": -23.3165935, "longitude": -58.1693445}, "Chile": {"latitude": -31.7613364, "longitude": -71.3187696}, "Argentina": {"latitude": -37.052315, "longitude": -64.869142}}}], "panels": ["tree", "entropy"], "extensions": {"nextclade": {"clade_node_attrs": [{"name": "outbreak", "displayName": "Outbreak", "description": "Annotation of recent outbreaks (to be refined)", "skipAsReference": false}]}}}, "tree": {"name": "NODE_0000000", "node_attrs": {"div": 0, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T47C", "T77G", "C88G", "C107T", "C146T", "C147T", "C173T", "T182C", "T191C", "G192A", "A200G", "T209C", "T215C", "G221C", "C230T", "T245C", "C254A", "G260A", "A272C", "C281T", "T285A", "T287A", "A290C", "A293G", "G294A", "A296T", "G299A", "C311T", "C312A", "A323T", "A331T", "T332C", "T338A", "T344C", "G350C", "A374C", "T395A", "G401A", "G404A", "A410G", "G424A", "C431T", "C432A", "A434G", "C444A", "A445G", "C446T", "G452T", "C457T", "T462G", "G470A", "G482A", "A485G", "A493G", "C503T", "T512G", "T518C", "C536T", "C539T", "G542A", "G548A", "C554T", "C558A", "G563A", "C566T", "G572T", "T590C", "C591T", "A608T", "C617G", "A632T", "A647G", "T653C", "G656A", "A674G", "G677A", "C680T", "A686C", "T695A", "G701A", "A704G", "C707T", "C713T", "A728G", "G737A", "A746G", "A749T", "C750A", "G751A", "A770G", "A792G", "A797G", "A815G", "G823C", "T824A", "G836T", "A842G", "A845C", "G851A", "T864G", "A866G", "A872G", "C873A", "A878G", "C881T", "C884T", "A896G", "A899T", "C914G", "T915C", "T923A", "G929A", "A938C", "C956T", "C971T", "A972G", "T983A", "G986C", "A995G", "A1004G", "C1007T", "A1013T", "G1023A", "A1025T", "G1028A", "T1034A", "A1046C", "T1047G", "C1059T", "T1064C", "G1072A", "G1079A", "T1080C", "G1082T", "C1085A", "C1097T", "G1102A", "T1116G", "G1118A", "G1133A", "G1142A", "A1157T", "A1160T", "C1178T", "T1190C", "T1193A", "C1196T", "T1227C", "G1238A", "G1257A", "G1259T", "C1277T", "A1289T", "A1293G", "A1295T", "T1319A", "C1328T", "A1334G", "A1337G", "T1339C", "T1358C", "A1370C", "T1376A", "A1379T", "C1385G", "C1386T", "T1389C", "A1391G", "A1397G", "T1415A", "C1433T", "T1436A", "A1445G", "A1454C", "A1472T", "A1478G", "A1490G", "A1496G", "C1517T", "C1550T", "T1565A", "T1571C", "C1574A", "C1590T", "G1595A", "A1598T", "T1610C", "T1619C", "A1625T", "G1646C", "G1649A", "C1655T", "G1656C", "T1661C", "T1670C", "T1691G", "C1694T", "C1696T", "C1697A", "T1709A", "G1712A", "C1715T", "C1733T", "G1736A", "G1748A", "C1751T", "T1757A", "G1763A", "C1778A", "G1781A", "T1784A", "C1793T", "C1811T", "A1814G", "T1823C", "T1829A", "A1832G", "A1847C", "A1848G", "T1865C", "C1871A", "G1875A", "C1917A", "G1925T", "A1934T", "A1937C", "T1944C", "C1949T", "G1955T", "C1958T", "T1962C", "A1970T", "A1976G", "T1994C", "T2018A", "C2027A", "A2033G", "T2036A", "C2037T", "A2039G", "T2045A", "G2051A", "T2069A", "A2072G", "C2078T", "G2083A", "C2088A", "T2090A", "G2093A", "A2099T", "T2100C", "C2114T", "C2117T", "G2120A", "C2123A", "A2126T", "C2141T", "C2144A", "T2147A", "T2148C", "A2150G", "T2159G", "T2165C", "C2168T", "C2177T", "A2180G", "A2186G", "C2189T", "T2192A", "T2198A", "C2213T", "G2225A", "G2237T", "A2249G", "G2252A", "T2255A", "C2265T", "T2267A", "A2270G", "T2285A", "G2288A", "G2291A", "C2294T", "G2300A", "A2308T", "C2310A", "C2328T", "C2360A", "T2372A", "G2373A", "A2384G", "T2390A", "T2393C", "G2399A", "C2405T", "C2412T", "C2429T", "C2432T", "T2459A", "A2462G", "T2480C", "C2486T", "C2504T", "T2525C", "C2528A", "G2543T", "G2544A", "T2547C", "T2548A", "G2555A", "A2582T", "C2583T", "A2591G", "T2597A", "C2621A", "T2624C", "G2648A", "T2654A", "A2660T", "C2662A", "A2663C", "G2678A", "G2687A", "C2693T", "G2696A", "T2733C", "T2741A", "G2747T", "C2748A", "A2753G", "A2756G", "A2762T", "C2774T", "T2783A", "G2795C", "T2810A", "T2813A", "G2822A", "A2831G", "G2832A", "T2834C", "C2835T", "T2843C", "A2861G", "G2883A", "C2903T", "T2906A", "A2913G", "G2914T", "G2921A", "C2957T", "A2975G", "T2984A", "T2987C", "G2990A", "G2996A", "C3023G", "T3024C", "A3026T", "A3038G", "C3039T", "G3041A", "A3062C", "T3063A", "C3066A", "T3068A", "T3074A", "T3083A", "C3098T", "A3131T", "A3132G", "T3134A", "G3146A", "G3150A", "A3152G", "G3161A", "C3170T", "A3174G", "A3179T", "C3182T", "A3185T", "C3188T", "A3190T", "G3197A", "C3207T", "T3209A", "C3218T", "G3252A", "C3254A", "C3261T", "T3263G", "G3272A", "C3275A", "A3281G", "G3302A", "T3305C", "A3320C", "A3329T", "C3344T", "C3353T", "C3357T", "G3359A", "G3362A", "A3377C", "G3392A", "A3401T", "G3404A", "G3407A", "G3413A", "C3422T", "T3424A", "G3449A", "C3461T", "T3483C", "A3488T", "T3515A", "G3521A", "A3527T", "A3530G", "T3536A", "T3539A", "A3548G", "T3554G", "T3560A", "G3581A", "T3590A", "C3602A", "C3606T", "T3623C", "C3624T", "T3626G", "G3632T", "T3633C", "T3651C", "A3656T", "C3668T", "C3684T", "T3690C", "G3692A", "T3698A", "A3704T", "A3707G", "T3713A", "C3734T", "C3740T", "T3761A", "T3764A", "C3782T", "A3788T", "C3797T", "C3798T", "T3800A", "G3806A", "T3809A", "G3813T", "C3818T", "A3827T", "T3833A", "A3848T", "T3857A", "T3866A", "A3869C", "T3899C", "T3902C", "A3908G", "A3920C", "G3929A", "T3932C", "A3941G", "C3956T", "G3962A", "T3977C", "C4004T", "C4010T", "C4013T", "C4014A", "G4019A", "T4031C", "T4046C", "C4061T", "T4073A", "A4105G", "T4113G", "T4114G", "G4118T", "G4139T", "T4163C", "C4184T", "C4214T", "T4253A", "C4256T", "G4271A", "A4274G", "C4289T", "C4316T", "G4319A", "G4322A", "A4325T", "T4331A", "G4352A", "G4354A", "C4366G", "G4373A", "C4385G", "T4397G", "T4415A", "A4418G", "G4421A", "T4427A", "C4436T", "G4487A", "T4499A", "T4514C", "T4532A", "A4535T", "A4547T", "G4553A", "T4565C", "C4575A", "T4577G", "A4580T", "G4590A", "C4592A", "T4601C", "C4602T", "T4604A", "C4616T", "A4622T", "G4625T", "C4640T", "T4658A", "T4664A", "C4667T", "T4674C", "A4676T", "C4680T", "T4682G", "A4688T", "C4703T", "C4704T", "A4739G", "T4754A", "G4760A", "A4772T", "G4778C", "T4784A", "C4808T", "C4821T", "T4826C", "A4838G", "A4841T", "A4844G", "T4847C", "G4850A", "C4860T", "T4868A", "T4874A", "G4882A", "T4883C", "T4886C", "T4898C", "G4904A", "G4907A", "A4931G", "C4934T", "A4940G", "A4961T", "A4967T", "T4994A", "C4995T", "C5000T", "T5016C", "G5018T", "A5034C", "T5039C", "A5042G", "A5043C", "G5045A", "A5061G", "C5093G", "T5094C", "A5105T", "G5123T", "C5150A", "G5162A", "C5177T", "T5192C", "C5195T", "A5204T", "T5225A", "A5258T", "A5267G", "G5268A", "A5282G", "A5284G", "G5288A", "C5294A", "T5295C", "G5300A", "C5312A", "G5324A", "T5325C", "C5328A", "T5331C", "A5333G", "G5348T", "A5354G", "A5357G", "A5361G", "A5364C", "A5372G", "A5376C", "C5381T", "G5390A", "A5393G", "C5406A", "G5408A", "T5412C", "A5426G", "A5444G", "T5456A", "G5462T", "A5480G", "G5492A", "A5493C", "G5501A", "C5502T", "T5504A", "T5507G", "G5510A", "A5519T", "A5540C", "A5546T", "A5550T", "G5551C", "T5585G", "A5594T", "C5595A", "G5603A", "T5604C", "C5625T", "A5634G", "A5637C", "A5639G", "G5651T", "A5669T", "C5690T", "T5711A", "A5717T", "A5720T", "T5726C", "T5738C", "C5747T", "C5759A", "C5780A", "C5781T", "C5783G", "C5792T", "G5801A", "T5804A", "G5810A", "T5819C", "A5840T", "G5852T", "C5864A", "A5885G", "T5903C", "T5906A", "G5909A", "C5924T", "G5927A", "G5942A", "T5957A", "C5984T", "T5987C", "T5990A", "A6020G", "A6023T", "T6027C", "G6029T", "C6047T", "G6053T", "A6065T", "A6068T", "T6074A", "A6083G", "G6086A", "G6092A", "C6101T", "G6107A", "G6125T", "G6128T", "A6146T", "C6149G", "A6150C", "A6151G", "C6164T", "A6176G", "C6180T", "T6182A", "A6188T", "A6197T", "T6203C", "C6209T", "A6215C", "C6218T", "T6219C", "A6227T", "C6248T", "T6257C", "A6261G", "T6266A", "T6269A", "T6276C", "A6284T", "C6290T", "G6293A", "A6299G", "C6300T", "T6302A", "G6317A", "A6320T", "A6326T", "A6329G", "A6335G", "C6342A", "A6344G", "T6353G", "A6382G", "G6389A", "G6398A", "A6401T", "A6422T", "A6425G", "C6434T", "T6450C", "G6452C", "C6453T", "C6467T", "G6470A", "C6476T", "A6485C", "A6496G", "G6497A", "T6502A", "C6509T", "A6556G"], "RdRp": ["V53I", "S84T", "V87I", "Y99F", "I126M", "G130E", "Q133K", "H137S", "T141I", "S143A", "K153R", "L201T", "R239K", "K253E", "S263T", "S273G", "L277E", "N313D", "S338A", "R346K", "I350V", "R356K", "S361A", "L371I", "V408I", "I420V", "I435T", "A437V", "S438G", "N443H", "D450E", "A541S", "T554I", "I605V", "R683K", "Q759K", "I775T", "L838Q", "S876N", "V933I", "S960V", "E1032D", "N1033E", "E1039K", "N1047G", "N1052V", "V1073I", "F1130Y", "N1258K", "A1260S", "V1264I", "A1346S", "N1357S", "L1360G", "T1444S", "L1514M", "V1519I", "D1541E", "T1593A", "E1644D", "V1745I", "I2023V", "K2039R", "D2106E", "K2116R"]}, "labels": {"aa": "RdRp: V53I, S84T, V87I, Y99F, I126M, G130E, Q133K, H137S, T141I, S143A, K153R, L201T, R239K, K253E, S263T, S273G, L277E, N313D, S338A, R346K, I350V, R356K, S361A, L371I, V408I, I420V, I435T, A437V, S438G, N443H, D450E, A541S, T554I, I605V, R683K, Q759K, I775T, L838Q, S876N, V933I, S960V, E1032D, N1033E, E1039K, N1047G, N1052V, V1073I, F1130Y, N1258K, A1260S, V1264I, A1346S, N1357S, L1360G, T1444S, L1514M, V1519I, D1541E, T1593A, E1644D, V1745I, I2023V, K2039R, D2106E, K2116R"}}, "children": [{"name": "NODE_0000001", "node_attrs": {"div": 0.0252458, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C74G", "G89T", "C131T", "A188G", "A198C", "G200C", "T216C", "T269A", "T297C", "T308C", "A320T", "T348C", "T362A", "A365G", "G368T", "A395G", "A477T", "C486G", "T605C", "T636A", "T637C", "C671T", "A698G", "C716T", "G770T", "G803A", "A852G", "T854G", "T977A", "A1037T", "A1115G", "C1146A", "G1148A", "T1158C", "A1166G", "A1184G", "C1191T", "A1205T", "A1239G", "A1296G", "T1298G", "T1346A", "T1355A", "T1361A", "A1362C", "G1412A", "T1493C", "T1508A", "C1512T", "T1520A", "C1679A", "A1682T", "A1781T", "G1844A", "C1850A", "C1869T", "T1919G", "G1961A", "T2049C", "A2051T", "A2066G", "G2102A", "C2156A", "C2157A", "C2165T", "T2214C", "A2225G", "A2246T", "C2286A", "T2354A", "G2531A", "T2661A", "A2699G", "C2843A", "G2858A", "G2927A", "A3029T", "C3071T", "T3167C", "A3175G", "C3267A", "C3552T", "T3563C", "C3587A", "A3773T", "T3785A", "T3875A", "C3902A", "A3974G", "G3995A", "A4016G", "T4157A", "G4175A", "T4223A", "A4265G", "A4354C", "T4364A", "T4440C", "C4526T", "C4562A", "T4574A", "T4634A", "A4700T", "A4812G", "A4882G", "C4898A", "A4901C", "C4943T", "G5012A", "G5061A", "C5088T", "A5129G", "G5183T", "A5207G", "T5262C", "A5264T", "C5309T", "C5316A", "G5372T", "G5432A", "T5450A", "C5483T", "C5489A", "T5498A", "G5597A", "A5615T", "G5639C", "T5771A", "A5774T", "A5786C", "T5835C", "G5851A", "A5864T", "G5981A", "C6011T", "C6153T", "T6291C", "G6329A", "T6332A", "A6395C", "A6410T", "T6462C", "A6482G", "C6491T", "G6533T"], "RdRp": ["D13E", "T18S", "I148L", "P151A", "V330I", "I402V", "I421V", "E549D", "V614M", "A837T", "Q875H", "L1010I", "E1361D", "E1555D"]}, "labels": {"aa": "RdRp: D13E, T18S, I148L, P151A, V330I, I402V, I421V, E549D, V614M, A837T, Q875H, L1010I, E1361D, E1555D"}}, "children": [{"name": "PP_006W1X5|13796_L|Argentina|1990|Argentina/1990-XX-XX", "node_attrs": {"div": 0.1505, "strain": {"value": "PP_006W1X5|13796_L|Argentina|1990|Argentina/1990-XX-XX"}, "accession": "PP_006W1X5", "author": {"author": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J.", "value": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J."}, "date": {"value": "1990-XX-XX"}, "abbr_authors": {"value": "Shedroff et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP058739.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP058739.1"}, "PPX_accession": {"value": "PP_006W1X5.1", "url": "https://pathoplexus.org/seq/PP_006W1X5.1"}, "institution": {"value": "Centers for Disease Control and Prevention, Viral Special Pathogens Branch"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-04-30"}, "host": {"value": "mice and others"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6623}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["T1G", "A2G", "A26G", "G27T", "T29G", "G44A", "C47T", "A54G", "C60A", "G62A", "T68C", "A92T", "T99C", "A101T", "A110T", "C117T", "G119A", "C128G", "A138C", "A140G", "T152A", "A167G", "T185C", "C191T", "T203A", "C209G", "A212G", "C215T", "T236C", "A254G", "G263A", "T281C", "T284A", "C290T", "G293A", "A294C", "C305T", "A314G", "A341T", "C344T", "C350T", "G356A", "T359C", "T368C", "A377T", "T380A", "A392T", "G410A", "A411C", "G416A", "C428A", "C429A", "T440G", "G443A", "G467A", "T476C", "A479G", "A495C", "T504G", "C505G", "A506G", "G509A", "A524T", "A530T", "T557C", "A563G", "T569C", "T578G", "G581A", "C584T", "A593G", "T595C", "C596T", "T602C", "T608A", "A613T", "A629G", "A636G", "A638T", "A650T", "C653A", "T654C", "A656G", "A662T", "A695C", "C699T", "G728A", "A731T", "C738T", "A740G", "T749C", "G752T", "A764G", "C768G", "A769G", "T773C", "A794G", "G797A", "A809C", "C812T", "C821A", "A827T", "T836C", "T839A", "C845T", "G853A", "G854A", "C855T", "A856G", "G863T", "T865A", "T870A", "T871A", "G875A", "T884C", "T899C", "A900C", "A902T", "T908C", "T909C", "C912T", "C915T", "A923G", "A929T", "A932G", "A947G", "A950G", "T962A", "G968A", "G980A", "A983C", "C986G", "A992T", "G1004A", "T1013G", "C1032T", "T1038C", "A1051T", "T1058C", "G1061A", "C1065T", "T1067A", "G1073A", "G1106T", "C1109T", "A1118T", "A1142T", "A1175T", "C1190T", "A1193G", "T1199C", "T1202A", "G1208A", "G1217A", "T1220G", "A1226C", "C1227A", "C1241A", "A1253C", "C1261A", "A1268G", "T1289A", "A1291C", "G1298A", "G1301A", "G1304A", "A1313T", "T1316C", "A1322G", "A1329G", "G1334A", "A1338G", "C1345T", "A1347T", "A1350G", "G1352A", "C1358T", "A1361G", "T1364C", "C1370A", "T1394C", "C1413T", "A1421G", "T1431A", "C1437T", "G1439A", "A1461T", "A1476C", "C1484T", "A1491G", "G1506T", "G1511T", "T1517C", "T1523G", "T1529C", "G1568A", "A1583T", "T1604C", "A1614C", "G1616T", "A1628T", "T1640C", "A1649G", "T1655C", "A1658T", "C1661T", "T1664C", "T1673A", "G1691A", "T1694A", "A1697T", "A1730G", "A1736G", "A1739G", "A1769T", "C1770T", "T1772A", "A1778C", "C1826A", "A1829C", "G1832A", "T1856C", "A1883G", "G1886A", "C1893T", "A1901T", "T1910C", "C1913T", "A1928C", "A1931T", "A1940G", "T1943A", "C1944T", "T1955C", "G1959A", "G1964T", "T1965C", "A1967G", "A1986C", "A1988C", "A1991T", "A2003G", "G2006T", "C2015T", "C2016T", "T2037C", "T2051C", "A2054C", "A2057G", "A2069G", "C2070A", "G2072A", "T2087C", "A2090G", "T2094C", "A2096T", "A2102T", "A2105C", "T2111C", "T2114G", "T2126A", "G2160A", "T2165G", "T2177C", "G2186A", "T2204A", "T2210C", "T2228A", "T2240C", "A2243G", "C2273T", "A2274G", "A2288G", "G2297A", "G2298A", "A2299C", "T2308A", "A2309G", "T2327C", "T2328C", "A2330T", "C2339T", "A2351T", "A2360G", "A2361G", "A2362C", "A2369G", "A2372T", "A2373G", "A2378G", "C2388T", "A2390G", "G2411A", "A2414G", "A2420C", "G2426A", "T2429C", "A2435G", "T2468A", "C2474A", "A2483G", "C2514A", "C2516A", "C2522A", "C2526T", "A2528G", "A2534G", "T2543C", "G2549A", "T2570G", "T2573A", "G2579A", "T2582C", "A2598C", "A2615C", "C2624T", "T2633C", "C2658A", "A2665G", "A2669C", "T2675C", "T2681A", "T2684G", "A2690G", "A2705G", "A2708T", "A2717T", "C2726T", "C2733T", "A2735G", "T2747A", "G2753A", "G2756A", "T2768C", "A2780T", "G2789A", "T2792A", "T2816C", "T2819G", "T2825C", "A2827G", "A2852G", "A2855T", "C2865T", "T2867A", "T2894C", "T2903C", "A2912G", "C2918A", "A2919C", "A2920G", "C2928A", "T2945C", "C2987T", "A2997C", "A2999G", "A3011T", "A3014C", "G3023A", "C3024T", "T3026A", "C3035T", "A3044G", "T3053A", "A3065T", "G3080A", "T3098A", "A3104G", "A3107G", "C3110T", "T3122C", "T3155C", "G3177A", "T3182A", "T3188C", "A3194G", "C3203T", "T3218C", "A3233T", "T3248A", "T3251C", "A3257T", "A3284G", "A3293T", "A3299G", "T3308C", "C3320T", "A3338T", "T3344C", "T3350C", "A3362G", "T3365A", "T3374C", "C3377A", "T3389C", "A3407G", "T3422C", "T3461C", "T3467C", "T3470C", "C3471T", "A3485T", "T3488C", "A3491G", "T3503C", "A3506G", "A3539T", "T3557A", "T3572C", "T3578A", "A3590T", "T3593C", "T3596C", "A3602T", "A3614T", "C3623T", "T3624C", "T3650C", "C3651T", "T3668C", "A3671G", "A3677T", "A3692T", "C3701T", "G3707A", "A3719T", "A3723G", "A3725T", "A3728T", "T3729C", "A3743G", "T3746G", "G3749A", "G3752A", "G3755A", "A3764G", "A3791T", "G3792T", "A3809G", "A3821G", "A3824T", "A3830C", "C3831T", "C3845T", "G3863A", "A3866T", "C3869A", "T3878C", "G3884T", "G3896A", "C3917T", "C3932T", "T3938G", "A3939C", "T3947G", "T3950C", "T3965G", "C3977T", "G3980A", "A3989G", "A4001T", "T4017C", "G4025A", "T4034C", "A4043G", "C4046T", "T4064A", "T4067C", "G4071T", "T4097C", "T4103A", "T4127C", "A4130G", "C4145T", "A4162C", "A4181G", "A4190C", "T4205C", "T4208G", "C4211T", "T4217C", "A4220T", "T4229A", "A4238G", "C4248T", "T4250A", "T4259C", "C4290A", "G4292A", "T4325G", "A4331T", "T4337A", "T4346C", "A4353T", "T4355A", "A4364G", "C4376T", "T4382C", "A4390G", "A4409T", "A4442T", "A4448G", "A4451T", "C4463T", "A4481G", "A4494G", "T4496G", "C4508T", "A4520G", "G4529A", "C4531T", "A4532T", "T4535A", "G4556C", "A4613T", "C4619T", "T4628C", "T4640C", "T4641C", "A4643T", "A4658G", "A4661T", "T4676C", "T4703A", "C4712T", "A4721T", "G4733A", "G4739T", "G4741A", "A4766G", "A4775G", "C4778T", "A4781G", "A4790T", "C4793T", "T4796C", "T4799C", "T4802C", "G4811A", "A4820C", "C4835T", "A4836C", "G4838A", "G4856A", "A4859G", "A4865G", "C4883T", "C4901T", "A4904G", "T4913C", "T4916A", "C4926A", "G4931T", "T4955C", "G4970A", "A4979G", "A4988C", "A4994G", "G4997A", "A5009G", "A5015C", "G5028A", "T5054A", "T5066C", "T5069A", "A5078G", "T5081C", "T5084A", "C5087G", "A5096G", "T5105C", "T5106C", "T5111C", "G5121A", "T5123C", "A5144C", "A5147G", "T5153C", "A5156C", "T5159C", "A5174T", "A5189C", "A5210C", "C5222T", "C5223T", "T5231C", "T5234C", "A5292G", "A5297G", "T5306G", "G5330A", "G5354A", "G5357A", "A5360G", "G5361A", "T5363A", "G5393A", "A5408G", "A5414G", "G5417T", "T5418C", "A5429T", "T5435A", "T5438C", "G5444A", "G5460A", "T5462A", "A5465T", "T5471C", "A5489G", "C5493A", "A5501C", "G5507A", "A5513G", "G5516A", "C5517A", "T5519A", "T5522A", "T5525C", "C5540A", "T5543C", "A5549G", "T5552A", "T5558C", "C5561T", "T5564A", "T5601C", "A5603T", "A5606T", "A5609T", "T5618C", "A5624T", "T5625C", "G5627T", "A5645G", "G5654A", "C5694T", "T5702C", "A5708T", "A5711T", "T5720A", "C5724T", "C5726G", "A5729G", "T5748C", "A5750G", "T5756A", "A5762C", "T5768G", "T5774C", "A5780T", "T5792G", "G5795A", "T5798C", "A5804T", "T5813C", "G5816A", "C5819T", "C5832T", "A5834G", "C5861T", "G5876T", "T5897A", "A5906T", "A5909T", "T5921A", "T5924C", "A5926G", "G5930A", "T5948C", "T5960C", "A5967G", "A5990T", "C5997T", "G5999A", "T6008A", "A6017G", "G6020A", "C6027T", "T6029A", "G6035A", "T6038C", "T6050C", "T6065C", "T6068C", "T6084C", "A6086T", "A6095T", "T6101A", "A6102G", "T6104A", "T6110A", "A6115G", "G6116A", "G6133A", "A6134G", "T6146A", "G6149C", "C6150A", "G6152A", "A6155G", "A6158G", "T6170C", "G6176A", "C6179A", "C6191T", "C6219T", "A6239T", "C6244T", "A6245G", "C6254T", "A6260T", "C6262T", "A6263C", "A6269T", "C6273T", "A6275G", "T6281C", "T6284G", "T6290C", "T6311A", "A6317G", "T6326G", "A6330G", "C6347T", "A6349G", "T6354C", "A6356T", "A6371G", "A6372G", "T6380C", "A6383G", "A6389G", "T6401A", "T6419C", "T6422C", "C6428T", "T6431A", "G6437A", "C6450T", "C6452A", "G6455A", "C6456A", "A6459C", "G6464A", "T6467C", "T6479A", "C6485A", "A6488T", "T6498-", "G6500C", "T6504G", "T6507G", "A6513T", "T6514G", "A6521T", "G6526A", "A6528G", "A6530G", "T6531A", "T6532C", "G6536T"], "RdRp": ["I7V", "Q9K", "I87L", "M126L", "L132I", "I154L", "S157G", "V187A", "Y193F", "T201A", "K239N", "Q245G", "G273E", "H274C", "Q276H", "L279K", "Q280K", "Y339F", "V350I", "D395E", "L398I", "A409E", "K419T", "I432V", "T435A", "G438C", "M439V", "S466T", "I476L", "S486G", "A491S", "S541P", "E642K", "H693Q", "V709I", "I747V", "E755T", "E772D", "T775M", "N776A", "H875N", "K877R", "K931R", "V950I", "K962R", "G1048S", "V1052I", "I1230V", "A1253S", "I1264V", "H1356Q", "N1376T", "N1452S", "I1487V", "A1499V", "E1530D", "R1569K", "V1665I", "V1696I", "K1750R", "I1753V", "V1809I", "P1828T", "I1850M", "I1867V", "N1919K", "R1939N", "K1964R", "I1978V", "D2022E", "K2027R", "R2033K", "T2070M", "T2076V", "T2099A", "K2105R", "T2113A"]}, "labels": {"aa": "RdRp: I7V, Q9K, I87L, M126L, L132I, I154L, S157G, V187A, Y193F, T201A, K239N, Q245G, G273E, H274C, Q276H, L279K, Q280K, Y339F, V350I, D395E, L398I, A409E, K419T, I432V, T435A, G438C, M439V, S466T, I476L, S486G, A491S, S541P, E642K, H693Q, V709I, I747V, E755T, E772D, T775M, N776A, H875N, K877R, K931R, V950I, K962R, G1048S, V1052I, I1230V, A1253S, I1264V, H1356Q, N1376T, N1452S, I1487V, A1499V, E1530D, R1569K, V1665I, V1696I, K1750R, I1753V, V1809I, P1828T, I1850M, I1867V, N1919K, R1939N, K1964R, I1978V, D2022E, K2027R, R2033K, T2070M, T2076V, T2099A, K2105R, T2113A"}}}, {"name": "NODE_0000002", "node_attrs": {"div": 0.0643555, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T91C", "A104G", "C137A", "C155T", "A218T", "A254T", "C344A", "T447C", "C480A", "A494G", "T503C", "A558C", "G560A", "A575T", "A599G", "G623A", "C692T", "A740T", "T762C", "A764C", "A818G", "A860G", "C891A", "G917A", "A944C", "A947T", "A950T", "A1022T", "A1034T", "C1046T", "C1064T", "A1090T", "C1176T", "T1178A", "T1247G", "A1262T", "A1275G", "G1344A", "A1347G", "T1494C", "G1496T", "C1518A", "C1571T", "C1646T", "A1650G", "A1652T", "C1656T", "T1715G", "T1805A", "C1817A", "C1862T", "A1895T", "T1916A", "T1922C", "G1985A", "T2087G", "A2120T", "A2123T", "T2135G", "T2138G", "T2204C", "T2229C", "G2231T", "A2307G", "T2308C", "T2375G", "T2453A", "A2498T", "A2561T", "G2585A", "A2813T", "T2879A", "A2882G", "A2885G", "G2930T", "A3146T", "A3173T", "A3189G", "A3194T", "T3347A", "T3428C", "G3458A", "G3509T", "G3530T", "A3545T", "G3548A", "G3554A", "A3605G", "A3659T", "T3708C", "A3710T", "C3717T", "A3807C", "A3821C", "G3825A", "T3827A", "A3890T", "A3959T", "G4199A", "A4238T", "T4328A", "T4343C", "A4353G", "C4358T", "A4400G", "T4403C", "A4517G", "C4601T", "T4616C", "T4625A", "T4628A", "A4631T", "A4643G", "A4668C", "A4709G", "C4722T", "A4740C", "T4757A", "C4847A", "A4859C", "C4886T", "A4922T", "T4925A", "C4929T", "A5006G", "A5051G", "C5094T", "T5111A", "C5208T", "A5312T", "C5325T", "T5348A", "T5405A", "A5495G", "G5588A", "G5634A", "A5648T", "G5663T", "C5705T", "A5714T", "C5825T", "T5852A", "C5868T", "T5870A", "A5915T", "A6207G", "C6215A", "A6221T", "G6261A", "C6267T", "A6314T", "A6386G", "C6413T", "T6443A", "G6464T", "C6516T", "G6522T", "T6555G"], "RdRp": ["V19A", "P149T", "Q245H", "E277V", "Q280E", "Y352F", "D404E", "I414V", "V437T", "I539V", "K758A", "D780M", "V950M", "K1258Q", "S1346A", "V1430I", "I1776V", "R1939K", "V2023I", "I2058V"]}, "labels": {"aa": "RdRp: V19A, P149T, Q245H, E277V, Q280E, Y352F, D404E, I414V, V437T, I539V, K758A, D780M, V950M, K1258Q, S1346A, V1430I, I1776V, R1939K, V2023I, I2058V"}}, "children": [{"name": "NODE_0000003", "node_attrs": {"div": 0.131071, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G62A", "A65G", "T83A", "C117T", "T122C", "G158A", "C209T", "T218C", "A243G", "T278C", "T296C", "T398C", "A399C", "A401T", "A413G", "G416A", "C428T", "A455G", "A456G", "A461G", "A464T", "T473C", "T488A", "A533T", "A542T", "T545A", "A548G", "A618C", "A629G", "T632A", "A695T", "A731C", "C758T", "A809C", "C821A", "A824T", "G828A", "T830C", "A832G", "T833C", "T836C", "G864A", "G872A", "A873G", "A877G", "A887G", "G920A", "A923C", "G927A", "T941C", "T989C", "A1019T", "T1038C", "G1055A", "T1058C", "A1070T", "A1083G", "T1088C", "T1091C", "G1106A", "T1124A", "G1130C", "A1133G", "A1142T", "T1152C", "T1181A", "A1187G", "T1211C", "A1229T", "C1250T", "T1259A", "C1317T", "A1319G", "A1329G", "C1353G", "A1376G", "G1385A", "C1389T", "T1400C", "T1406C", "C1413T", "A1430G", "T1433A", "G1478A", "T1499C", "G1511T", "A1526G", "A1538G", "T1550C", "G1556T", "A1562G", "A1580T", "A1592G", "A1634G", "T1647C", "A1658T", "A1679T", "G1691T", "T1694G", "A1709T", "T1724A", "T1737C", "A1739C", "T1745A", "A1763G", "T1772C", "A1784T", "A1803G", "T1811C", "C1826A", "T1839C", "A1841T", "C1847T", "T1856C", "C1914T", "A1916G", "G1946T", "A1973G", "C1979T", "A2003T", "A2012C", "C2015T", "C2016T", "T2021C", "G2033A", "G2039A", "A2057G", "G2150T", "A2178C", "A2192T", "A2216G", "T2241C", "A2243T", "A2306G", "A2309T", "T2324A", "G2333A", "C2339T", "T2342C", "T2359C", "A2362G", "A2366G", "A2390T", "G2402A", "A2420T", "A2435G", "T2438C", "G2444A", "A2447T", "A2456G", "C2480T", "T2486C", "C2492T", "T2507C", "A2513C", "C2522A", "T2540A", "T2543A", "G2568T", "T2588A", "T2636A", "A2657G", "T2660C", "A2672G", "A2676C", "A2708C", "C2733T", "A2738C", "G2744A", "G2789A", "A2801G", "A2804G", "A2810C", "A2828G", "A2855T", "A2870G", "A2876T", "A2900C", "C2918T", "T2930C", "A2936G", "T2951A", "A2963G", "A2972T", "G2975T", "T2981C", "A2997C", "T3002C", "C3032T", "A3033G", "T3056A", "G3101A", "T3105C", "A3107C", "T3119A", "T3137C", "T3149G", "A3164T", "T3176A", "T3179A", "T3188A", "A3200G", "G3215A", "T3219C", "A3221T", "A3236T", "A3239G", "T3248A", "A3252G", "G3263A", "A3296G", "A3302T", "A3314G", "A3338C", "T3353A", "T3365A", "A3398T", "A3416T", "A3419T", "A3440T", "A3473G", "C3482T", "C3483T", "A3506G", "A3512T", "G3518A", "A3521G", "T3551C", "T3557A", "T3596G", "T3632C", "A3635T", "T3650C", "A3653G", "A3677T", "G3680A", "T3704A", "A3719G", "A3728C", "A3737T", "T3788A", "T3797C", "G3803A", "T3839A", "T3848C", "A3914T", "C3920T", "A3925T", "T3938C", "T3950C", "T3965C", "T3966C", "A3968G", "T4040C", "C4046T", "G4058A", "T4067A", "A4070G", "A4073T", "T4085C", "T4103C", "A4115T", "T4136A", "T4139A", "C4145T", "T4151C", "A4160G", "T4172C", "A4190G", "T4217A", "G4235A", "C4251A", "T4259C", "G4274A", "T4355A", "T4388C", "T4391C", "A4394C", "C4395T", "A4442G", "A4448G", "A4451G", "A4452C", "G4454A", "G4460A", "A4466G", "A4472T", "T4490A", "A4493G", "C4514T", "T4547C", "G4583T", "T4607C", "T4649A", "T4667C", "A4679G", "T4688C", "A4708G", "A4721T", "G4742A", "A4760G", "T4772A", "G4787A", "C4826A", "A4832C", "C4835A", "T4841G", "G4862A", "A4877G", "G4884A", "A4907G", "A4937T", "G4940A", "A4941G", "G4958A", "T4967A", "T4976A", "A4978G", "A4988T", "G5036T", "G5042A", "A5045G", "T5057C", "A5072G", "C5091T", "A5135G", "C5142A", "A5145C", "A5147G", "A5150T", "T5159A", "A5165G", "A5174T", "T5219A", "T5237C", "T5246C", "T5273C", "G5284A", "A5303T", "T5306C", "A5324G", "A5328C", "G5330T", "C5334T", "A5348G", "A5351T", "A5366T", "C5396A", "T5399C", "A5402G", "G5453A", "T5471A", "A5474C", "C5505A", "A5510C", "T5522C", "C5534T", "A5542C", "T5582C", "C5600T", "A5606T", "A5645G", "A5657T", "A5660T", "G5687A", "T5702A", "A5708G", "T5717C", "G5723A", "C5726T", "T5727C", "A5732G", "C5735T", "A5759C", "T5765C", "T5798C", "T5807A", "T5840A", "C5861T", "A5882G", "T5984C", "A5996C", "G6020A", "A6041T", "T6053C", "A6062G", "T6077A", "T6080C", "T6110A", "A6113G", "G6116A", "T6128A", "A6131T", "G6143A", "G6149A", "G6152T", "T6173A", "T6180C", "A6194G", "T6197A", "C6203T", "T6209A", "T6227A", "C6233T", "A6242G", "G6256A", "C6257T", "A6272C", "T6290C", "A6293G", "T6326A", "G6335T", "A6350G", "A6360G", "A6368T", "A6371G", "A6383G", "A6389G", "C6395T", "A6398G", "A6404G", "C6411T", "T6413A", "T6416A", "G6437A", "A6458T", "A6470C", "G6496A", "A6497G", "A6502T", "T6523C", "T6533-", "G6552A", "C6560T"], "RdRp": ["I70V", "I141V", "A265S", "N266S", "V277M", "K281R", "V298I", "I432V", "P440A", "T590A", "N776S", "M780K", "A845S", "N1000D", "I1073V", "E1089D", "Y1297F", "S1440A", "K1558R", "V1617I", "I1636V", "D1644E", "K1648R", "N1836T", "I1850M", "S2074N", "I2109V"]}, "labels": {"aa": "RdRp: I70V, I141V, A265S, N266S, V277M, K281R, V298I, I432V, P440A, T590A, N776S, M780K, A845S, N1000D, I1073V, E1089D, Y1297F, S1440A, K1558R, V1617I, I1636V, D1644E, K1648R, N1836T, I1850M, S2074N, I2109V"}}, "children": [{"name": "NODE_0000004", "node_attrs": {"div": 0.172261, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G104A", "C114T", "A140G", "T173C", "T236G", "C272A", "A302G", "C332T", "C390A", "G467A", "G485A", "G494A", "C503T", "G512A", "A530T", "T533C", "T554A", "C584T", "C596T", "G617A", "A620T", "C653T", "T680C", "C699T", "T710C", "A737G", "G746A", "T749C", "C776T", "C836A", "G860A", "T881C", "C944A", "G968A", "T974C", "C990T", "A1010G", "T1067G", "T1100C", "A1103G", "A1214G", "A1226G", "A1283G", "G1301A", "A1310G", "G1334T", "G1397A", "C1454T", "T1604C", "T1607C", "A1628G", "A1643T", "T1703C", "T1728C", "T1733C", "T1740C", "G1742A", "A1748G", "T1784C", "T1799C", "A1817G", "A1842C", "T1866C", "C1937T", "T1949C", "T1952A", "C1962T", "C1994T", "G1997A", "T2024A", "A2102G", "T2132C", "T2150C", "T2177C", "G2180C", "T2189C", "T2192C", "A2222G", "T2237C", "T2243C", "T2265C", "C2273T", "G2297A", "A2357G", "A2399G", "A2414G", "A2510G", "A2555G", "A2597C", "T2639C", "C2663T", "T2675A", "T2684A", "T2693C", "T2720C", "T2751C", "T2835C", "A3008G", "T3029A", "T3071C", "T3089C", "A3104G", "A3134T", "T3164C", "T3191A", "T3224C", "A3254T", "A3257C", "T3258C", "A3260G", "G3281A", "G3287A", "T3290C", "T3344C", "A3353G", "T3357C", "T3383C", "C3428T", "T3530C", "C3563T", "A3581T", "T3611G", "C3623T", "C3651T", "A3686G", "T3689C", "C3690T", "G3755A", "C3821T", "A3824T", "T3854C", "A3866G", "C3869T", "T3878C", "C3917T", "T3923C", "C3932T", "T3956C", "G4016A", "G4025A", "C4031T", "A4082G", "A4094G", "T4106C", "T4110C", "T4133C", "A4139G", "T4154C", "T4173C", "A4175C", "C4176T", "T4178A", "A4247G", "A4253G", "A4271G", "A4286G", "A4298G", "C4310A", "T4349C", "A4370G", "A4433G", "A4454T", "C4463A", "T4484C", "T4496A", "A4505G", "A4520G", "A4538G", "T4541C", "C4565T", "C4616T", "C4619T", "A4658G", "A4673G", "C4712A", "A4724G", "T4751G", "A4772G", "G4823A", "G4844A", "A4874T", "C4883T", "A4898T", "C4901A", "T4922C", "A4925G", "A4928C", "A4976G", "C5039T", "A5040C", "T5060C", "A5096G", "A5111G", "T5123A", "A5162G", "T5174C", "A5186G", "C5192T", "G5207A", "A5219G", "C5222T", "C5295T", "C5331T", "T5358C", "G5417A", "A5420G", "T5438A", "G5480A", "G5516A", "T5591C", "A5678G", "C5694T", "A5744G", "A5834G", "T5843C", "C5867T", "T5879C", "T5975C", "G5978A", "T6026C", "A6074G", "A6077G", "A6086G", "A6137G", "T6138C", "A6155G", "T6164C", "A6182G", "T6185C", "C6191T", "G6212A", "T6218C", "T6221C", "T6251C", "T6314C", "G6344A", "C6347T", "G6365A", "A6372G", "G6386A", "A6413G", "T6431C", "T6434C", "G6461A", "G6499A", "T6507C", "G6549T", "A6552C", "A6554G", "C6557A", "T6558A", "T6560A", "T6561G"], "RdRp": ["S265T", "E1033D", "I1430V", "M1981I", "T2113A"]}, "labels": {"aa": "RdRp: S265T, E1033D, I1430V, M1981I, T2113A"}}, "children": [{"name": "PP_006W27K|ER19-SP1693|Argentina/2019-XX-XX", "node_attrs": {"div": 0.196718, "strain": {"value": "PP_006W27K|ER19-SP1693|Argentina/2019-XX-XX"}, "accession": "PP_006W27K", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2019-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP151172.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151172.1"}, "PPX_accession": {"value": "PP_006W27K.1", "url": "https://pathoplexus.org/seq/PP_006W27K.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Entre Rios"}, "region": {"value": "South America"}, "length": {"value": 6563}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["G6T", "T7A", "A62G", "C75T", "G119A", "T185C", "G266A", "A276T", "C308T", "A416G", "C518T", "T530C", "G581A", "G635A", "G644A", "G698A", "G752A", "C764T", "G779A", "T800C", "C809T", "T824C", "C833T", "G878A", "G887A", "A893G", "C941T", "A1028G", "T1076C", "C1121T", "T1196C", "T1202C", "A1238G", "G1319A", "A1344G", "A1385G", "G1439T", "T1529C", "G1577A", "C1604A", "T1631C", "T1640C", "C1647T", "C1661T", "T1682C", "T1709C", "A1769G", "G1916A", "T1943C", "T1979C", "T1982C", "T2016C", "A2018C", "A2036G", "T2063C", "A2069G", "G2072A", "A2105G", "G2138A", "T2162C", "A2171G", "A2201G", "G2225A", "G2270A", "A2291G", "T2294C", "T2328C", "A2360T", "T2363C", "C2393T", "A2408G", "A2441G", "G2456A", "T2480C", "C2486T", "A2495G", "C2526T", "A2546G", "G2579A", "G2651A", "A2717G", "A2786G", "G2846A", "A2927G", "A2951C", "G2963A", "G3038A", "C3062T", "C3110T", "C3137T", "A3191G", "C3203T", "T3221C", "T3254C", "C3320T", "T3323C", "C3338T", "A3347T", "C3377T", "A3380G", "T3390C", "T3497G", "A3548G", "T3635G", "G3653A", "A3692G", "A3725T", "T3737C", "A3812G", "T3914C", "T3920C", "T3935C", "T3944C", "C3950T", "A4001G", "A4067G", "G4160A", "C4172T", "A4199G", "A4235G", "C4259T", "T4295C", "T4346C", "C4391T", "A4421G", "A4481G", "C4508T", "T4586C", "C4667T", "T4703C", "A4754G", "G4760A", "T4796C", "T5018C", "C5057T", "C5141T", "A5159G", "T5183C", "C5223T", "A5225G", "G5261A", "C5423T", "T5519C", "C5582T", "A5597G", "A5624G", "T5675C", "A5696G", "C5727T", "T5781C", "C5798T", "T5855C", "G6035A", "C6080T", "C6200T", "G6225A", "A6227G", "A6230G", "A6275G", "T6354C", "T6453C", "T6467C"], "RdRp": ["N81Y", "T437A", "A2064T"]}, "labels": {"aa": "RdRp: N81Y, T437A, A2064T"}}}, {"name": "PP_006W1V9|15631_L|Argentina|1998|Argentina/1998-XX-XX", "node_attrs": {"div": 0.190546, "strain": {"value": "PP_006W1V9|15631_L|Argentina|1998|Argentina/1998-XX-XX"}, "accession": "PP_006W1V9", "author": {"author": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J.", "value": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J."}, "date": {"value": "1998-XX-XX"}, "abbr_authors": {"value": "Shedroff et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP058737.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP058737.1"}, "PPX_accession": {"value": "PP_006W1V9.1", "url": "https://pathoplexus.org/seq/PP_006W1V9.1"}, "institution": {"value": "Centers for Disease Control and Prevention, Viral Special Pathogens Branch"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-04-30"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6540}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["C191T", "A192G", "G243A", "A251G", "G343A", "C398T", "T458C", "T527C", "T557C", "A563G", "C605T", "G647A", "A677G", "T692G", "A751G", "T848C", "G875A", "T1025C", "T1037C", "T1059C", "C1123A", "C1130T", "A1139G", "T1157C", "A1163G", "G1187A", "T1220C", "G1247A", "T1295C", "C1400T", "T1460C", "T1590C", "C1610T", "T1646C", "C1670T", "A1808G", "G1814A", "A1940T", "T2075C", "A2093G", "T2168C", "T2210C", "A2267G", "A2330G", "A2528G", "T2603C", "A2612G", "C2624T", "G2657A", "G2828A", "G2870A", "T2894A", "A2951G", "T2978C", "T3236C", "T3237C", "T3266C", "T3302C", "T3339C", "A3413G", "A3485G", "T3489C", "A3515T", "A3533G", "A3584C", "A3671G", "T3695C", "G3749A", "C4040T", "T4064A", "C4085T", "A4130G", "T4214C", "G4292A", "T4445C", "C4547T", "T4703G", "G4733A", "A4736T", "G4739A", "G4841A", "G4853A", "C4922A", "A5138G", "A5189G", "T5231C", "A5294C", "C5306T", "T5372C", "G5393A", "C5399T", "C5522T", "T5601C", "G5783A", "C5819T", "C5832T", "A5906G", "T5963C", "A6161G", "T6170C", "C6180T", "A6197G", "G6242A", "T6248C", "C6254T", "C6273T", "G6375A", "T6449C", "C6452T"], "RdRp": ["I53V", "V70I", "G103E", "K239R", "P363Q", "V2114I"]}, "labels": {"aa": "RdRp: I53V, V70I, G103E, K239R, P363Q, V2114I"}}}]}, {"name": "NODE_0000005", "node_attrs": {"div": 0.17421, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G31A", "C75T", "A101G", "T113C", "T146C", "T147C", "C221T", "T230C", "A260G", "A299T", "C305T", "T311C", "C374T", "A411T", "A422G", "T477C", "A479G", "G509A", "C518T", "A530G", "A560T", "T591C", "A620G", "T626C", "T627C", "T654C", "T668C", "G674A", "C686T", "T695C", "T716C", "C761T", "T770A", "G779A", "A802G", "C812T", "G815A", "A827G", "A828T", "G842A", "G854A", "C861A", "T869C", "T950C", "T1022C", "G1073A", "A1085G", "T1097C", "C1109T", "T1112C", "A1178G", "C1190T", "G1239A", "T1256C", "A1268G", "G1274A", "T1349C", "C1370A", "T1394C", "A1412G", "A1415G", "T1418G", "A1421G", "G1439A", "T1469C", "C1475T", "T1511C", "A1520G", "T1523C", "T1566C", "A1601T", "G1616A", "C1661T", "T1688C", "A1712G", "T1820C", "C1823T", "A1850C", "C1859T", "A1883G", "C2100T", "A2144T", "G2159A", "T2174C", "A2258G", "T2264C", "G2270A", "A2303G", "C2308A", "T2315C", "T2348A", "A2357C", "A2381G", "G2387A", "T2432C", "T2439C", "A2459G", "C2474T", "A2483G", "C2526T", "T2573A", "T2633C", "A2648G", "G2699A", "T2711C", "A2741G", "T2747C", "A2759C", "A2765G", "T2774C", "T2819C", "G2861A", "A2897C", "T2903C", "A2933G", "T2945C", "T2954C", "T2957A", "C2987T", "T2993C", "C3035T", "A3068G", "T3098A", "T3125C", "G3269A", "A3275T", "G3341A", "A3392G", "T3398C", "T3419C", "T3443C", "A3449G", "T3470C", "T3488A", "T3503C", "A3536G", "T3552C", "T3572G", "T3615C", "G3626A", "T3638G", "T3656A", "A3665G", "T3668C", "T3684C", "A3698G", "A3704G", "A3731G", "T3753C", "T3818C", "C3831T", "T3836A", "A3839G", "C3845G", "C3864T", "T3881C", "G3884T", "A4037G", "T4046G", "T4061C", "C4163T", "T4169C", "C4211T", "T4238C", "T4250C", "G4323A", "T4325C", "A4328T", "C4343T", "A4361G", "A4373G", "C4383T", "G4385A", "C4403T", "A4500C", "C4508T", "G4517A", "T4535C", "G4643A", "A4649G", "A4670G", "G4682A", "T4694C", "C4778T", "G4811A", "A4865G", "A4892G", "G4931A", "T4943C", "G4970A", "G4997A", "T5054A", "T5063A", "T5066C", "A5078G", "C5087T", "C5141T", "G5198A", "T5234A", "A5249G", "T5270C", "T5303C", "A5315G", "T5321C", "G5333A", "T5363C", "T5369C", "T5372G", "A5406C", "T5459C", "T5462A", "A5489G", "G5495A", "A5501G", "A5504G", "A5549G", "T5552C", "G5627A", "T5642C", "A5700G", "A5780T", "C5786T", "T5864A", "A5870G", "T5966C", "T5972C", "C5997T", "A6017G", "T6023A", "T6041C", "T6050C", "T6101C", "A6173G", "T6188C", "A6269G", "T6281C", "T6284G", "A6305G", "T6335C", "A6348C", "T6380A", "A6443G", "T6491C", "G6556A"], "RdRp": ["M126L", "H245Q", "K256R", "Q276K", "V402I", "A758D", "I1889V", "K2105Q"]}, "labels": {"aa": "RdRp: M126L, H245Q, K256R, Q276K, V402I, A758D, I1889V, K2105Q"}}, "children": [{"name": "PP_006W1SF|BA18-LD1633|Argentina/2018-XX-XX", "node_attrs": {"div": 0.184281, "strain": {"value": "PP_006W1SF|BA18-LD1633|Argentina/2018-XX-XX"}, "accession": "PP_006W1SF", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2018-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP003837.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP003837.1"}, "PPX_accession": {"value": "PP_006W1SF.1", "url": "https://pathoplexus.org/seq/PP_006W1SF.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 6587}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["A92T", "C128T", "A158G", "T227C", "C245T", "C290T", "A770G", "C809A", "A872G", "C915T", "A920G", "G1040A", "C1123A", "T1160C", "T1172C", "G1298A", "G1445A", "A1535G", "G1568T", "T1655C", "T1751C", "T1874C", "A1967G", "T1981C", "A1988G", "C2004T", "T2060C", "A2714G", "G2804A", "T2867G", "T3194C", "T3207C", "T3758C", "T3782C", "A3928G", "T4382C", "A4499G", "A4715T", "C4740A", "A4754G", "T4769C", "A4833G", "A4847C", "G4856A", "A5009G", "T5243C", "C5246T", "A5318G", "G5327A", "A5432G", "C5540T", "T5550G", "T5714C", "G5783A", "T5813C", "C6179T", "A6230G", "C6254T", "T6359C", "A6380G", "G6497A", "A6552T", "G6555T", "A6556T"], "RdRp": ["P363Q", "F649S", "K1298R", "I1600V", "S1839A"]}, "labels": {"aa": "RdRp: P363Q, F649S, K1298R, I1600V, S1839A"}}}, {"name": "PP_006W1RH|BA18-RR1620|Argentina/2018-XX-XX", "node_attrs": {"div": 0.185272, "strain": {"value": "PP_006W1RH|BA18-RR1620|Argentina/2018-XX-XX"}, "accession": "PP_006W1RH", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2018-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP003836.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP003836.1"}, "PPX_accession": {"value": "PP_006W1RH.1", "url": "https://pathoplexus.org/seq/PP_006W1RH.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 6558}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["G71A", "A192G", "C332T", "G410A", "T572G", "T614C", "T719C", "G728A", "G788A", "G834A", "G1004A", "T1034A", "C1088T", "A1106G", "A1139G", "A1150G", "G1184A", "T1232C", "A1322G", "G1391A", "C1499T", "T1556C", "T1590C", "G1766A", "T1793C", "G1832A", "A1901G", "T1982C", "T2063C", "G2072A", "T2141C", "A2201G", "G2216A", "T2231C", "G2384A", "T2396C", "T2492C", "T2498C", "G2651A", "T3032C", "G3033A", "T3092C", "T3122C", "A3176G", "G3314A", "A3515T", "G3596A", "A3809G", "A3986T", "C4031T", "T4064C", "C4310T", "T4367C", "T4406C", "G4466A", "T4514C", "T4610C", "T4751C", "G4941A", "T5018C", "T5106C", "G5135A", "A5297G", "G5426A", "A5693G", "C5835T", "A5909G", "G5999A", "T6008C", "C6290T", "A6356G", "G6371A", "C6452T", "C6485T", "C6553A"], "RdRp": ["I53V", "V267I", "K372R", "D1000N", "V1636I"]}, "labels": {"aa": "RdRp: I53V, V267I, K372R, D1000N, V1636I"}}}]}]}, {"name": "NODE_0000006", "node_attrs": {"div": 0.0959423, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C114T", "A116G", "A194T", "T227A", "T236A", "T242C", "G263A", "C347T", "G386A", "G434A", "C487T", "A500T", "G635A", "T839C", "C845A", "A890G", "A900C", "C990T", "A1016G", "G1040A", "A1051T", "G1151A", "T1160A", "A1163T", "A1169G", "C1190A", "A1244T", "A1253C", "G1274A", "C1307T", "T1308C", "A1310T", "A1325T", "G1337A", "G1391T", "G1442A", "G1445A", "A1463T", "C1466T", "T1529C", "A1538T", "A1562T", "A1574C", "G1577A", "A1595G", "C1622T", "A1628T", "G1676A", "A1734C", "G1766A", "T1775A", "A1796G", "G1814A", "C1823T", "A1850G", "G1892A", "T1925A", "C1937G", "G1964A", "G2006A", "T2040C", "A2081T", "T2091C", "A2147T", "C2148T", "T2213C", "T2237A", "A2372G", "A2374T", "T2405A", "A2459T", "A2534T", "G2579T", "A2598C", "T2603C", "A2662G", "T2681A", "A2687G", "C2726A", "C2834A", "T2894A", "A2990G", "A2996G", "A3014T", "G3080A", "A3086G", "C3110T", "A3134G", "C3158T", "T3190C", "C3230T", "A3284G", "T3323C", "G3341A", "T3437A", "G3608A", "C3633T", "C3641T", "T3722C", "T3746A", "G3752A", "A3761G", "A3779T", "A3794C", "A3812G", "A3833T", "T3836G", "T3923A", "G3941A", "A4055G", "A4076G", "T4118C", "T4127A", "T4151A", "C4163T", "T4229A", "T4256C", "A4319G", "G4323A", "T4340C", "C4383T", "T4436C", "A4487G", "T4559A", "T4602C", "A4658T", "A4664T", "A4718T", "T4725C", "G4733A", "A4736T", "T4751A", "A4784T", "T4808A", "A4814T", "G4844A", "G4853A", "A4868T", "T4902C", "A4947C", "C4986T", "A5030T", "C5034A", "A5075T", "A5117G", "C5192T", "G5198A", "A5210G", "T5231A", "T5240C", "G5261A", "A5268G", "A5294T", "C5376A", "A5390G", "C5412T", "C5423T", "G5426A", "G5507T", "G5576A", "G5585T", "T5675C", "C5738T", "T5756A", "G5816A", "C5867T", "G5885A", "G5930A", "T5969A", "A6032G", "A6044G", "A6074T", "A6137T", "C6273T", "G6353A", "T6419C", "C6428T"], "RdRp": ["A151V", "Y339F", "N876S", "V1052A", "E1541D", "I1745V"]}, "labels": {"aa": "RdRp: A151V, Y339F, N876S, V1052A, E1541D, I1745V"}}, "children": [{"name": "PP_006W0VA|VARS/22-01|Brazil/2022-12-09", "node_attrs": {"div": 0.199204, "strain": {"value": "PP_006W0VA|VARS/22-01|Brazil/2022-12-09"}, "accession": "PP_006W0VA", "author": {"author": "Amgarten, D.; Dorlass, E.; dos Santos Soares, A. C.; Moreira Salles, A. P.; Takara, A.; da Silva Santos, A.; Oliveira Sartori, B. S.; Petroni, R. C.; Sallum Filho, C. F. C.; Hidal, J. T.; Camargo, L. F. A.; Doi, A.; Rebello Pinho, J. R.", "value": "Amgarten, D.; Dorlass, E.; dos Santos Soares, A. C.; Moreira Salles, A. P.; Takara, A.; da Silva Santos, A.; Oliveira Sartori, B. S.; Petroni, R. C.; Sallum Filho, C. F. C.; Hidal, J. T.; Camargo, L. F. A.; Doi, A.; Rebello Pinho, J. R."}, "date": {"value": "2022-12-09"}, "abbr_authors": {"value": "Amgarten et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "OQ092243.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OQ092243.1"}, "PPX_accession": {"value": "PP_006W0VA.1", "url": "https://pathoplexus.org/seq/PP_006W0VA.1"}, "institution": {"value": "Hospital Israelita Albert Einstein, Varsomics"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-01-18"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Brazil"}, "region": {"value": "South America"}, "length": {"value": 6538}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["A26G", "G27T", "G44A", "C47T", "G74A", "G77T", "A80T", "A110G", "G119T", "G125A", "C128T", "T146C", "A167G", "T179A", "C191T", "A212G", "C215T", "C221T", "T230C", "C245T", "T254C", "C272A", "T284C", "A294G", "A302G", "C308T", "A314G", "T320A", "T326C", "C348T", "C350A", "T359C", "T368C", "T371C", "C374T", "T380A", "A389T", "A392G", "C428T", "T431C", "G443A", "T457C", "A465C", "T476C", "T477C", "G485A", "T488A", "T491C", "A506T", "A521G", "A524T", "A542C", "T545A", "T554C", "T578A", "T608A", "T611C", "G617T", "A618C", "T626C", "T627C", "A634G", "A636G", "C637T", "A638T", "T654C", "A656T", "T668C", "T671C", "A689T", "T692A", "C699T", "A701G", "A714G", "G734A", "G744A", "G746T", "A751G", "T755A", "C764T", "G788A", "G797A", "A814G", "C821T", "A827G", "A831G", "A832C", "T836G", "G842T", "G843A", "G853A", "G875T", "A887G", "A893G", "G914A", "C915A", "A917T", "G920A", "C921T", "T941C", "T956A", "C986T", "G1004A", "T1007C", "A1028G", "T1046A", "T1049A", "G1055A", "G1061A", "T1082C", "A1102G", "A1103G", "G1115A", "C1121T", "C1122T", "T1124A", "G1130A", "T1157C", "A1160G", "G1166A", "A1175G", "G1184A", "A1188G", "G1208A", "G1217A", "A1223G", "A1226C", "G1247A", "A1283T", "C1317T", "T1328C", "T1331C", "T1343C", "G1367A", "A1376T", "T1379A", "T1391C", "T1400C", "C1413A", "A1415C", "A1421G", "T1433C", "A1436T", "G1439C", "C1475T", "T1481C", "G1490A", "C1493T", "A1502T", "G1506T", "A1535G", "G1556A", "A1565C", "G1568A", "A1592G", "T1598G", "T1607A", "G1616A", "C1619T", "T1628C", "A1634G", "T1647C", "A1675G", "C1678T", "A1695G", "G1715A", "T1733C", "T1745C", "T1746C", "A1748T", "A1769T", "T1772C", "A1778G", "T1781A", "A1808G", "T1820C", "A1841G", "C1859T", "T1863C", "C1865T", "T1866C", "T1869C", "A1880T", "T1895G", "A1901G", "C1914T", "C1923T", "C1944T", "T1952A", "T1958C", "C1962T", "T1965C", "A1973G", "C1979T", "C1994T", "T2000C", "C2004T", "T2024A", "A2036T", "T2048C", "T2060C", "G2066A", "A2069C", "T2075C", "A2093G", "T2094C", "A2096G", "G2135A", "A2144C", "G2150A", "A2156C", "G2159A", "A2171G", "T2184C", "T2189A", "A2198C", "C2214T", "G2225A", "T2228G", "T2241C", "A2243C", "T2246G", "T2264C", "A2267G", "C2273T", "A2291G", "A2299C", "A2300C", "T2318G", "T2324C", "T2328C", "T2348A", "A2351G", "G2375A", "G2384A", "C2393T", "A2405G", "G2411A", "A2423G", "A2441G", "A2447T", "T2459C", "G2462A", "T2468C", "T2471C", "A2495G", "A2513C", "C2516T", "C2525T", "T2534C", "A2544G", "A2546C", "T2565C", "T2579C", "T2588A", "A2606G", "A2612G", "A2618G", "A2621T", "A2669T", "A2678G", "A2717G", "T2747A", "A2750G", "A2822G", "G2831A", "A2852T", "A2870G", "G2882T", "A2888T", "A2897C", "A2900T", "T2909C", "C2915G", "A2927G", "T2934C", "A2972T", "A2984G", "C2987A", "T3002C", "A3008G", "G3023T", "C3024T", "T3026G", "C3035T", "G3038A", "T3039C", "A3044G", "C3062T", "T3098C", "A3099C", "A3104G", "T3105C", "T3125C", "G3152C", "T3179C", "A3200T", "C3203T", "A3209G", "A3212G", "G3215T", "T3219C", "T3237C", "T3241A", "T3251A", "A3257T", "T3258C", "A3260C", "T3261C", "G3269A", "A3272G", "A3275G", "T3285C", "T3311C", "C3320T", "T3326C", "T3329A", "T3357C", "A3359G", "A3368G", "C3377A", "T3390C", "A3392C", "A3413G", "A3440T", "T3443C", "T3470C", "T3476C", "C3482T", "A3485T", "T3489C", "T3500C", "A3515T", "T3557C", "T3566C", "A3599G", "A3602T", "T3606C", "C3623T", "A3671G", "T3681G", "T3689C", "C3690T", "T3695A", "A3713T", "A3728G", "T3729C", "A3731T", "A3764T", "T3782C", "G3803A", "A3809G", "C3845A", "T3848C", "G3863A", "C3869T", "A3875G", "T3881C", "G3884T", "C3917T", "A3939C", "T3956C", "G3957A", "T3966C", "A3968T", "G3980A", "A4001G", "G4007A", "T4017C", "A4019T", "G4025A", "T4028C", "T4067C", "A4082G", "T4085C", "T4109C", "A4115G", "C4125A", "G4126A", "T4133C", "T4136A", "T4139A", "T4154C", "A4166G", "A4181T", "A4190G", "A4193G", "T4242C", "A4268G", "T4277C", "C4290A", "A4313G", "T4325A", "A4328G", "T4349C", "C4354T", "A4370G", "C4376T", "T4388C", "T4412C", "A4433G", "A4452C", "G4454A", "T4457C", "C4463A", "A4475G", "A4481G", "T4490G", "G4502A", "G4523A", "T4535C", "A4544C", "A4562C", "C4565T", "A4574G", "G4583T", "A4592C", "A4628C", "C4629T", "T4631G", "A4637T", "T4640C", "A4661G", "A4673G", "T4688A", "T4691C", "T4697A", "T4700G", "T4703C", "G4742A", "A4751G", "A4760T", "T4784C", "C4793T", "T4796C", "T4802C", "T4814C", "G4823A", "C4826T", "A4829G", "C4835T", "A4842C", "A4850G", "C4859T", "A4874T", "A4877G", "A4919G", "T4967C", "G4970A", "A4978G", "A4982G", "A4994G", "T4995C", "T5018C", "C5043A", "A5048G", "T5066C", "T5081C", "C5091T", "T5106C", "G5129A", "A5144T", "A5150T", "A5156C", "T5159C", "T5204A", "A5225C", "T5234C", "A5249G", "T5258A", "A5259C", "T5270G", "G5284A", "A5285G", "T5291C", "T5294C", "A5303T", "T5312C", "A5324C", "G5333T", "A5351T", "T5381C", "G5393A", "C5411T", "G5433T", "T5438A", "G5444A", "G5453A", "T5462C", "A5465C", "T5468C", "A5474G", "A5501T", "T5502C", "T5507C", "A5510G", "T5519A", "C5540T", "T5546C", "T5558A", "T5564A", "A5573T", "T5585C", "C5600T", "C5604T", "A5609C", "T5615A", "A5624G", "T5633C", "A5660G", "T5663A", "A5677G", "A5678G", "A5681G", "A5684G", "A5696T", "T5718A", "T5720A", "G5723C", "C5724T", "C5726A", "A5744G", "T5747C", "A5750G", "A5759T", "T5774A", "T5777C", "G5783A", "C5786A", "G5831A", "C5835T", "A5846T", "T5858C", "T5864C", "T5879C", "A5894G", "C5903T", "A5909T", "T5915C", "T5921A", "A5942G", "T5960A", "T5975C", "T6011C", "T6038C", "T6047C", "T6053C", "T6065A", "T6084C", "A6095T", "A6107G", "A6115G", "T6125G", "T6128C", "A6131T", "A6134G", "G6143A", "T6170G", "T6173A", "T6185G", "C6191T", "T6197C", "C6233T", "T6251C", "C6254T", "G6256A", "A6266C", "C6276T", "A6293C", "T6311A", "A6317G", "T6320C", "A6329G", "G6335C", "G6344A", "C6347T", "T6361C", "T6380A", "G6382A", "A6404G", "T6410C", "G6425A", "T6431A", "A6458T", "C6485T", "C6487A", "A6488G", "T6498A", "G6499C", "T6505C", "A6506T", "A6513G", "A6519C", "T6529A", "A6530T", "T6531G", "A6554G", "C6557T", "T6558C", "A6559G", "T6561A"], "RdRp": ["I25M", "I87V", "M126I", "I141T", "K200R", "T201V", "I227V", "E237N", "K239R", "K260R", "N266A", "Q269H", "A270T", "G273E", "E280N", "L294I", "V350I", "K356R", "P363S", "I385V", "L460I", "A491S", "K547R", "A548V", "I554V", "F610L", "E755A", "T775I", "M780I", "T837A", "K1039N", "F1069Y", "S1216A", "V1308I", "R1364K", "S1440V", "D1555E", "K1648R", "A1800S", "K1881R", "S1895T", "D1975E", "K2027R", "S2074N", "I2109T", "R2116K", "T2151K"]}, "labels": {"aa": "RdRp: I25M, I87V, M126I, I141T, K200R, T201V, I227V, E237N, K239R, K260R, N266A, Q269H, A270T, G273E, E280N, L294I, V350I, K356R, P363S, I385V, L460I, A491S, K547R, A548V, I554V, F610L, E755A, T775I, M780I, T837A, K1039N, F1069Y, S1216A, V1308I, R1364K, S1440V, D1555E, K1648R, A1800S, K1881R, S1895T, D1975E, K2027R, S2074N, I2109T, R2116K, T2151K"}}}, {"name": "NODE_0000007", "node_attrs": {"div": 0.200019, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A65G", "T83A", "A86G", "A98G", "A137G", "G149A", "G158A", "A164C", "T185C", "G188A", "T203A", "T230G", "A233C", "A260G", "C272T", "T281C", "T284A", "G293A", "C305T", "A312C", "T320C", "A335G", "A344G", "A362T", "A399C", "A404G", "G407A", "A413G", "T452C", "G462A", "T473A", "A492C", "A497T", "T500C", "G509A", "G512A", "T539A", "T554A", "A560T", "T569C", "T578C", "G581A", "T591C", "A593T", "C605T", "G644A", "C653A", "A662T", "G674A", "A677G", "G728A", "A737G", "T740C", "G752A", "C758T", "C761T", "C776T", "G779A", "T786C", "T800C", "A803G", "A827C", "G828A", "T830A", "T870A", "A873G", "T881C", "G896A", "T899C", "A902T", "G914C", "A926T", "A929T", "G935A", "C938T", "C944T", "T950G", "C965T", "G995A", "A1070C", "G1073A", "A1079G", "A1083G", "A1085T", "T1088C", "T1091C", "T1100C", "T1112C", "A1133G", "A1145T", "A1148G", "T1167C", "T1172C", "A1178G", "T1181A", "T1191C", "A1193C", "T1202A", "T1205G", "T1220C", "A1226G", "A1238G", "C1250T", "T1259A", "A1292G", "T1295C", "G1298A", "G1304A", "T1310C", "A1313T", "T1316C", "A1319T", "T1331A", "C1339T", "T1349G", "A1355T", "T1356G", "C1358A", "C1370T", "T1386C", "G1397A", "T1418A", "T1428C", "C1437T", "A1451T", "C1454T", "C1470T", "T1472A", "C1484A", "A1487T", "T1523A", "T1566C", "A1580T", "A1589T", "A1601T", "C1610T", "A1613T", "T1631C", "A1643T", "T1664C", "T1673C", "T1703C", "A1709C", "A1712G", "A1730G", "T1740C", "G1742A", "A1748G", "T1799C", "A1817G", "C1827T", "A1842C", "C1847A", "A1883G", "T1907C", "C1913T", "G1919A", "A1928T", "T1943G", "G1946T", "T1949C", "T1955C", "G1976A", "A1988G", "G1997A", "A2003C", "A2018T", "T2024C", "A2027T", "A2030T", "G2033A", "T2037C", "A2045T", "C2049T", "T2051A", "A2054T", "A2084G", "G2087A", "A2088C", "A2090G", "A2093C", "T2099C", "C2100T", "A2105G", "T2114C", "T2117A", "G2138A", "T2168C", "A2178C", "G2186A", "A2216G", "A2222G", "A2261C", "T2276A", "A2285G", "A2286C", "A2288G", "T2294C", "A2309T", "A2311G", "A2330G", "G2333A", "G2355A", "T2359C", "A2360G", "A2366G", "A2378T", "G2387A", "C2388T", "T2412C", "A2414C", "A2415T", "G2426A", "T2429C", "C2480T", "C2492T", "T2498C", "T2504C", "A2510G", "C2522T", "T2543G", "T2561C", "T2573C", "T2582C", "A2597T", "G2600A", "T2604C", "A2610C", "C2624T", "A2627C", "T2636A", "G2651A", "C2663T", "A2672G", "T2675C", "T2684C", "T2693C", "A2714G", "T2720C", "A2738G", "G2744A", "T2747C", "G2753A", "A2765G", "T2768C", "T2792A", "C2795T", "A2801G", "A2804G", "T2813C", "A2822T", "A2843T", "C2853T", "A2858G", "C2896T", "C2915T", "C2918T", "T2945G", "G2975A", "A2999G", "A3011T", "T3026C", "C3032T", "A3041G", "T3056A", "A3065T", "A3074T", "G3101A", "A3107G", "C3111A", "T3119A", "T3137C", "T3149A", "T3155C", "A3161G", "T3176A", "T3182G", "T3191A", "A3197G", "T3207C", "A3209T", "A3221G", "T3224C", "T3251C", "A3254T", "T3290C", "A3293T", "A3296G", "T3297C", "A3338T", "T3353C", "A3380G", "T3383C", "A3398G", "T3401A", "A3416T", "A3446G", "T3461C", "C3471T", "T3488C", "T3497C", "T3500A", "A3512T", "A3524T", "T3530A", "A3536C", "A3581G", "A3590T", "T3603C", "G3605T", "A3614T", "T3615C", "A3617C", "T3638C", "C3651T", "A3662T", "A3677G", "C3701T", "T3704A", "G3707A", "A3737T", "G3749A", "G3755A", "T3758C", "T3779C", "A3785C", "T3798C", "C3821G", "A3824T", "A3830T", "A3857T", "A3866T", "A3875T", "T3878A", "T3893C", "G3908A", "C3920A", "T3938A", "T3944A", "A3951C", "T3960C", "A3962T", "C3977T", "T4013C", "A4019G", "A4037G", "A4043G", "G4058C", "T4064C", "A4070G", "A4094G", "T4097C", "C4101A", "A4112G", "A4127G", "A4130G", "T4142C", "T4148C", "T4169C", "A4181G", "A4191C", "G4196A", "T4197C", "T4205C", "T4217C", "A4241G", "C4251A", "C4257A", "T4259A", "A4271G", "A4283G", "T4289C", "G4292T", "A4304G", "C4310A", "A4313T", "C4326T", "A4334T", "A4350T", "C4354G", "A4364T", "T4367C", "T4382C", "G4385A", "T4391C", "A4394C", "C4395T", "G4400T", "A4415T", "G4418A", "G4460A", "A4469T", "A4472T", "A4481C", "T4490C", "A4493G", "A4499G", "A4505C", "C4514T", "G4529A", "A4538G", "T4550C", "A4553T", "A4574C", "T4580A", "A4604T", "T4607C", "G4611T", "C4619T", "A4625G", "G4646A", "T4664C", "C4674T", "T4676A", "A4679C", "T4685C", "T4694G", "T4703A", "C4712T", "T4718C", "T4730C", "A4754T", "G4787A", "A4832G", "G4838A", "G4856A", "T4860C", "G4862A", "A4865G", "T4868C", "T4880C", "G4884A", "T4895C", "T4916C", "G4965A", "A4979G", "A4988G", "G4997A", "A5012G", "C5016T", "T5018G", "A5033G", "C5039T", "G5051T", "T5057A", "T5084A", "C5087T", "A5090G", "G5093T", "A5096G", "T5123C", "C5141T", "T5153C", "A5162G", "T5171C", "T5183C", "C5223T", "T5234A", "T5246A", "T5252C", "T5258C", "G5267A", "T5270C", "T5273C", "T5279C", "A5297T", "A5300G", "T5306A", "T5309C", "A5316C", "C5331T", "T5358C", "A5360T", "A5378G", "C5396A", "A5402G", "A5429T", "A5456G", "A5465G", "T5471A", "A5489T", "T5490C", "A5504G", "A5513G", "G5516A", "G5531A", "C5534T", "C5540A", "T5546A", "T5550G", "T5552A", "C5561T", "A5583G", "T5591C", "T5594G", "A5595C", "T5601C", "T5615C", "T5621C", "C5639G", "T5651G", "T5663C", "T5669C", "A5693G", "T5717A", "T5765C", "T5768A", "C5786T", "T5798A", "A5801G", "A5804T", "A5810T", "T5813C", "C5832T", "A5837T", "T5840C", "T5843C", "A5882G", "T5891A", "T5897C", "A5927G", "T5936A", "A5939G", "T5949C", "A5951T", "A5990T", "A5996G", "C5997T", "G5999A", "T6023A", "C6027T", "T6029G", "G6035A", "T6059C", "T6074C", "T6080C", "G6083A", "A6092G", "A6140G", "G6152C", "T6153C", "T6156C", "A6158T", "G6176A", "A6182G", "C6200T", "G6212T", "T6218C", "T6248C", "T6258A", "C6291T", "A6296T", "G6299A", "A6302G", "A6348C", "A6350G", "A6356G", "A6360T", "T6362G", "G6365A", "G6375A", "C6395G", "T6401A", "T6410A", "T6416A", "T6422A", "A6435C", "A6443G", "C6452G", "T6453C", "C6456A", "G6461A", "T6464C", "A6470C", "T6476C", "T6479G", "G6482A"], "RdRp": ["A143T", "A265T", "L279M", "I371M", "T435I", "S441A", "K759R", "V774I", "S794C", "T954I", "D1303E", "H1356N", "T1439S", "A1526S", "V1617I", "D1644N", "K1750R", "S1839A", "I1850V", "S2075T", "K2105Q", "I2109L", "V2114I"]}, "labels": {"aa": "RdRp: A143T, A265T, L279M, I371M, T435I, S441A, K759R, V774I, S794C, T954I, D1303E, H1356N, T1439S, A1526S, V1617I, D1644N, K1750R, S1839A, I1850V, S2075T, K2105Q, I2109L, V2114I"}}, "children": [{"name": "PP_006W26M|BA16_LJC1557|Argentina/2016-XX-XX", "node_attrs": {"div": 0.204596, "strain": {"value": "PP_006W26M|BA16_LJC1557|Argentina/2016-XX-XX"}, "accession": "PP_006W26M", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2016-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP151171.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151171.1"}, "PPX_accession": {"value": "PP_006W26M.1", "url": "https://pathoplexus.org/seq/PP_006W26M.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 6443}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["T295C", "T431A", "T488C", "C1100G", "G1106A", "A1175G", "G1334A", "C1432A", "G1439A", "G1490A", "A1520G", "T1538C", "A1614C", "C1773T", "G1877A", "C2004T", "T2934C", "T3074C", "T3317C", "A3359G", "A3704G", "A3746G", "G4353A", "T4610C", "G4739A", "T4886C", "T6251C", "A6278G"], "RdRp": ["I87T", "S466Y", "M614I"]}, "labels": {"aa": "RdRp: I87T, S466Y, M614I"}}}, {"name": "NODE_0000008", "node_attrs": {"div": 0.203047, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G416A", "A629G", "G866A", "A1361G", "A1838G", "C1865T", "G1937A", "T2048C", "A2678G", "A3314G", "A3458G", "G4682A", "A4775G", "C5142A", "A5216G", "A5501G", "T6047C", "A6260G", "T6338C", "A6401G"], "RdRp": ["S1440G"]}, "labels": {"aa": "RdRp: S1440G"}}, "children": [{"name": "NODE_0000009", "node_attrs": {"div": 0.208547, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A851G", "G890A", "T1280C", "G1715A", "T1733C", "A2057G", "T2075C", "A2303G", "T2318C", "A2933G", "A2960G", "T3344C", "T3390C", "G3581A", "T3632C", "T3701C", "C3899T", "A3968G", "G4015A", "G4127A", "G4210C", "T4439C", "G4694A", "A4721G", "A4745G", "G4832A", "A4877G", "T4885C", "G4988A", "G5006A", "G5336A", "A5342G", "T5868C", "A6194G", "C6450T"], "RdRp": ["R1327K", "S1392T", "I1617T"]}, "labels": {"aa": "RdRp: R1327K, S1392T, I1617T"}}, "children": [{"name": "PP_006W20Z|BA02_SMM484|Argentina/2002-XX-XX", "node_attrs": {"div": 0.208548, "strain": {"value": "PP_006W20Z|BA02_SMM484|Argentina/2002-XX-XX"}, "accession": "PP_006W20Z", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP151165.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151165.1"}, "PPX_accession": {"value": "PP_006W20Z.1", "url": "https://pathoplexus.org/seq/PP_006W20Z.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 6443}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0UC|Arg-h484|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.208548, "strain": {"value": "PP_006W0UC|Arg-h484|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0UC", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "OP555736.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555736.1"}, "PPX_accession": {"value": "PP_006W0UC.1", "url": "https://pathoplexus.org/seq/PP_006W0UC.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6443}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000010", "node_attrs": {"div": 0.205703, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G818A", "C839T", "G1385A", "T1746C", "A2051G", "G2311A", "T2486C", "G2510A", "A2544G", "A3275C", "C3353T", "C3536T", "T3552C", "T4313C", "A5111G", "A5144G", "G5882A"], "RdRp": ["R759K", "T837A"]}, "labels": {"aa": "RdRp: R759K, T837A"}}, "children": [{"name": "NODE_0000011", "node_attrs": {"div": 0.206946, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G6T", "T7A", "G98A", "C786T", "T1728C", "G2360A", "C3035T", "C5222T", "G5996A", "T6221C"]}}, "children": [{"name": "PP_006W24R|BA02_AOA490|Argentina/2002-XX-XX", "node_attrs": {"div": 0.207411, "strain": {"value": "PP_006W24R|BA02_AOA490|Argentina/2002-XX-XX"}, "accession": "PP_006W24R", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP151169.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151169.1"}, "PPX_accession": {"value": "PP_006W24R.1", "url": "https://pathoplexus.org/seq/PP_006W24R.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 6473}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["C11G", "T12A", "G2543A", "G3581A", "C6453T"]}}}, {"name": "NODE_0000012", "node_attrs": {"div": 0.206947, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W25P|BA02_ROM495|Argentina/2002-XX-XX", "node_attrs": {"div": 0.206948, "strain": {"value": "PP_006W25P|BA02_ROM495|Argentina/2002-XX-XX"}, "accession": "PP_006W25P", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP151170.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151170.1"}, "PPX_accession": {"value": "PP_006W25P.1", "url": "https://pathoplexus.org/seq/PP_006W25P.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 6443}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W23T|BA02_RJF487|Argentina/2002-XX-XX", "node_attrs": {"div": 0.207102, "strain": {"value": "PP_006W23T|BA02_RJF487|Argentina/2002-XX-XX"}, "accession": "PP_006W23T", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP151168.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151168.1"}, "PPX_accession": {"value": "PP_006W23T.1", "url": "https://pathoplexus.org/seq/PP_006W23T.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 6443}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["C3108T"], "RdRp": ["H1025Y"]}, "labels": {"aa": "RdRp: H1025Y"}}}]}]}, {"name": "NODE_0000013", "node_attrs": {"div": 0.207262, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G365A", "A893G", "A992G", "T1640C", "T1688C", "C2213T", "C2684T", "C3488T", "A5198G", "G5456A"]}}, "children": [{"name": "PP_006W22V|BA02_VO483|Argentina/2002-XX-XX", "node_attrs": {"div": 0.207729, "strain": {"value": "PP_006W22V|BA02_VO483|Argentina/2002-XX-XX"}, "accession": "PP_006W22V", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP151167.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151167.1"}, "PPX_accession": {"value": "PP_006W22V.1", "url": "https://pathoplexus.org/seq/PP_006W22V.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 6443}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["A251C", "G950A", "C6450T"], "RdRp": ["Q72H"]}, "labels": {"aa": "RdRp: Q72H"}}}, {"name": "NODE_0000014", "node_attrs": {"div": 0.207263, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2AD|BA02_VVD480|Argentina/2002-XX-XX", "node_attrs": {"div": 0.207778, "strain": {"value": "PP_006W2AD|BA02_VVD480|Argentina/2002-XX-XX"}, "accession": "PP_006W2AD", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP504849.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP504849.1"}, "PPX_accession": {"value": "PP_006W2AD.1", "url": "https://pathoplexus.org/seq/PP_006W2AD.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 2}, "date_released": {"value": "2024-09-23"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 3892}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["G3677A", "A6305G"]}}}, {"name": "PP_006W21X|BA02_VVN481|Argentina/2002-XX-XX", "node_attrs": {"div": 0.207418, "strain": {"value": "PP_006W21X|BA02_VVN481|Argentina/2002-XX-XX"}, "accession": "PP_006W21X", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP151166.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151166.1"}, "PPX_accession": {"value": "PP_006W21X.1", "url": "https://pathoplexus.org/seq/PP_006W21X.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "division": {"value": "Buenos Aires"}, "region": {"value": "South America"}, "length": {"value": 6482}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["C6453T"]}}}]}]}]}]}]}]}]}]}, {"name": "NODE_0000015", "node_attrs": {"div": 0.0184094, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G88C", "T147C", "C191T", "C245T", "T323A", "A338T", "A401G", "T446C", "G485A", "G512T", "T566C", "C653T", "G674A", "G704A", "G746A", "G842A", "G896A", "C938A", "A1023G", "A1028G", "C1046A", "C1080T", "T1082A", "G1116T", "T1160A", "A1193T", "G1293A", "G1334A", "C1389T", "G1397A", "C1454A", "G1478A", "G1490A", "T1625A", "C1847A", "C1865T", "C1944T", "A2069T", "G2072A", "G2150A", "G2159T", "A2198T", "A2252G", "A2360C", "A2372T", "G2384A", "A2544G", "A2548T", "G2591A", "A2621C", "A2741T", "A2921G", "G3038A", "C3062A", "G3174A", "T3185A", "C3320A", "T3527A", "A3536T", "T3656A", "C3690T", "A3713T", "T3734C", "A3764T", "T3848A", "C3899T", "C3920A", "G4113T", "G4114T", "A4322G", "A4373G", "A4415T", "T4688A", "A4754T", "C4778G", "C4826T", "T4841A", "T4961A", "C5016T", "C5039T", "T5105A", "T5204A", "G5282A", "C5331T", "C5364A", "C5376A", "C5604T", "T5669A", "C5738T", "T5840A", "C5903T", "C5987T", "T6023A", "T6065A", "G6083A", "T6128G", "T6188A", "C6203T", "T6248C", "T6320A", "A6342C", "A6398G", "T6453C"], "RdRp": ["V350I", "A361S", "I371L", "H443N", "Q838L"]}, "labels": {"aa": "RdRp: V350I, A361S, I371L, H443N, Q838L"}}, "children": [{"name": "PP_006W1W7|807266_L|Paraguay|1997|Paraguay/1997-XX-XX", "node_attrs": {"div": 0.208548, "strain": {"value": "PP_006W1W7|807266_L|Paraguay|1997|Paraguay/1997-XX-XX"}, "accession": "PP_006W1W7", "author": {"author": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J.", "value": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J."}, "date": {"value": "1997-XX-XX"}, "abbr_authors": {"value": "Shedroff et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PP058738.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP058738.1"}, "PPX_accession": {"value": "PP_006W1W7.1", "url": "https://pathoplexus.org/seq/PP_006W1W7.1"}, "institution": {"value": "Centers for Disease Control and Prevention, Viral Special Pathogens Branch"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-04-30"}, "host": {"value": "small vesper mouse"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Paraguay"}, "region": {"value": "South America"}, "length": {"value": 6537}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["A26G", "G27A", "T29C", "A30T", "G31A", "A34C", "G44A", "C47T", "A50G", "G53A", "T56A", "G62A", "T68A", "G70A", "G71A", "T76A", "A86T", "G89A", "A92G", "A110T", "A116C", "A123C", "G125T", "A138C", "A140G", "T146C", "G149T", "T152A", "C155T", "G158A", "A164T", "A167G", "T193G", "A194T", "A206T", "C209G", "C210G", "A212G", "C215A", "C219T", "C221A", "T227A", "A233T", "T236C", "A243G", "A248T", "A251G", "C290T", "A314G", "A346C", "C350A", "G356A", "T359C", "C374T", "G386T", "T387G", "A392T", "T398C", "A408C", "G410C", "A413G", "A425T", "C428G", "C429T", "T431G", "T437C", "G438A", "G443A", "A449G", "C450T", "T452A", "A455T", "A456G", "A461G", "G466A", "A468C", "A469G", "A470T", "T473C", "C486A", "T488A", "A492C", "T504A", "C505T", "A506G", "G509T", "A515T", "A530G", "A533T", "T539A", "T545A", "A548G", "G560A", "T578G", "G581A", "C588A", "C590A", "T602A", "G617A", "T626C", "T627C", "A629T", "A634G", "G635A", "T636C", "T637A", "A638G", "A645C", "G647T", "A650T", "A662T", "T668C", "T672C", "A677G", "T680C", "C686T", "A689T", "C692A", "A701C", "A702C", "A706T", "A712G", "T725C", "A726C", "G728C", "G734A", "C738T", "G752T", "A753C", "T755G", "C758A", "C761T", "A764G", "A765T", "T773C", "C776T", "G779A", "A780C", "T782A", "G788A", "A791T", "A809G", "C812T", "A824C", "G828T", "T830A", "A837G", "T838C", "A852C", "G853A", "T854C", "C855T", "G863A", "T865A", "T870A", "A873T", "A874C", "G875A", "G878T", "A882T", "A883C", "A887G", "A893T", "A902G", "C912T", "C915A", "G917T", "G920A", "G935T", "C937T", "C942T", "A944G", "A953C", "T956A", "C965T", "G968A", "T977C", "A978C", "G980A", "A981C", "T989C", "C990T", "A998T", "A1006T", "T1025C", "A1029G", "T1030C", "G1031A", "T1038C", "G1040A", "T1043C", "T1052C", "T1067A", "A1070T", "T1076A", "T1094C", "G1106T", "C1109T", "C1121T", "C1123A", "T1124A", "G1130T", "A1142C", "A1145T", "C1146T", "G1151A", "T1152A", "A1175C", "C1176A", "T1177G", "T1185G", "C1191A", "A1205G", "G1208A", "A1214G", "A1216C", "G1217T", "A1229C", "T1240C", "C1241A", "A1244T", "T1247C", "C1250T", "A1253T", "G1260T", "T1265C", "A1271C", "A1275C", "T1277A", "T1280C", "G1281A", "C1282A", "A1283T", "G1287T", "A1292G", "T1294C", "G1301A", "C1302A", "C1307A", "T1308C", "A1310G", "A1313T", "C1317T", "A1340C", "A1341C", "C1345T", "G1348C", "T1349A", "G1352C", "T1355C", "T1356A", "C1358A", "A1376G", "G1385A", "T1386C", "G1388C", "G1391A", "A1393G", "T1394C", "C1413A", "T1418G", "A1420G", "T1424C", "T1431A", "C1432G", "C1437T", "G1442A", "A1451T", "A1461C", "C1466T", "C1475A", "A1502T", "G1506T", "G1514C", "T1517A", "C1518A", "T1520A", "A1535T", "A1544G", "G1556T", "T1566C", "G1568T", "T1575C", "G1577A", "A1580G", "A1583C", "A1589T", "A1601G", "T1604A", "T1607A", "A1613T", "A1643T", "A1650T", "A1652G", "C1657A", "T1664C", "A1665C", "T1673A", "G1676A", "C1679T", "A1682G", "T1685A", "A1695G", "A1709G", "A1712G", "T1728C", "A1734C", "T1737C", "T1740C", "G1742A", "A1754T", "A1757G", "C1770T", "T1772G", "A1784C", "C1817A", "C1826T", "C1827T", "C1850T", "T1853C", "A1868G", "G1877A", "G1886A", "G1892A", "A1895C", "T1910C", "C1913T", "T1916A", "T1919A", "A1928T", "A1940T", "T1943A", "T1949C", "T1965C", "C1979T", "A1986C", "A1988T", "A1991C", "G1997A", "T2000C", "C2004T", "A2012G", "C2015T", "T2024A", "A2030T", "T2034A", "T2048C", "T2091C", "A2093T", "A2096G", "A2105T", "T2108A", "T2111C", "T2117A", "T2135G", "C2156T", "T2162A", "A2171G", "T2177C", "G2179A", "T2183C", "A2195G", "A2201C", "T2210C", "A2222G", "T2229C", "G2231C", "A2239C", "T2240A", "T2241C", "A2243T", "T2264C", "C2273T", "A2274G", "T2276A", "C2295A", "G2297T", "A2303G", "A2307G", "T2315C", "C2325T", "T2327A", "T2328A", "A2330G", "A2336G", "C2339T", "C2344A", "A2345T", "T2348A", "A2358G", "T2359C", "T2363A", "A2366T", "A2369T", "A2374T", "A2378G", "C2388T", "A2390G", "T2396C", "A2399G", "G2402A", "T2406G", "C2407T", "A2408G", "G2411A", "A2423G", "G2426A", "T2429G", "T2438C", "A2450G", "T2460C", "G2462T", "T2468A", "A2472G", "C2474T", "A2493C", "A2494G", "A2495C", "A2498G", "T2501C", "T2504C", "T2507C", "C2514A", "C2516G", "C2526T", "A2534T", "T2543C", "A2546C", "C2547T", "G2549A", "A2555G", "A2561G", "T2564C", "T2570A", "T2573A", "G2579A", "T2603C", "A2606G", "T2609C", "A2615T", "A2627T", "T2636A", "T2639G", "G2651A", "T2660G", "A2662T", "C2663T", "A2669C", "T2675A", "A2676C", "A2678T", "T2684A", "A2705G", "A2708T", "T2720C", "A2735T", "G2744A", "A2750G", "G2756A", "A2765G", "T2773A", "A2780T", "T2807C", "A2822T", "A2828G", "G2831A", "C2834A", "A2837G", "T2840C", "A2847C", "A2852T", "A2864T", "C2865T", "T2867A", "A2868C", "A2870G", "A2882C", "A2883T", "T2884C", "A2891G", "T2894A", "T2909G", "C2915A", "C2928A", "G2930A", "A2936G", "T2981C", "T3002C", "A3005T", "A3011T", "T3026C", "A3033C", "T3047C", "T3053C", "A3063C", "C3111A", "A3113G", "T3116C", "T3119A", "A3123G", "T3125G", "C3135T", "A3136G", "A3140T", "G3141A", "A3146T", "T3149A", "G3152T", "C3158T", "T3159C", "A3161T", "G3162T", "T3176G", "T3182G", "T3190C", "T3191A", "A3194C", "A3200G", "G3215A", "T3218C", "T3245G", "G3246T", "A3257T", "A3275G", "C3282T", "A3283G", "A3284C", "G3287A", "T3290C", "A3293T", "A3296G", "T3323C", "T3326C", "T3350C", "A3355T", "A3368G", "A3380T", "T3389C", "A3398G", "T3401C", "A3404T", "A3419G", "T3428C", "A3438G", "A3440T", "G3458A", "T3467C", "A3473C", "G3479A", "C3482T", "A3485T", "T3488G", "T3489C", "A3491C", "T3497C", "T3503A", "A3524C", "T3551C", "C3552T", "T3557A", "T3572C", "T3578A", "A3581T", "C3587T", "T3593C", "G3594A", "A3605G", "A3614T", "A3620T", "G3626A", "T3638C", "C3641T", "T3650C", "A3653T", "A3665G", "T3674C", "T3681G", "T3684C", "A3686G", "C3701T", "T3708C", "C3712G", "C3717T", "A3719G", "A3725T", "A3728T", "A3737G", "A3743G", "G3749A", "T3753C", "T3767A", "T3770C", "A3773G", "A3779C", "T3788C", "A3800G", "T3805C", "A3806T", "A3812G", "G3819A", "G3825A", "T3827C", "A3830T", "C3831T", "C3845T", "C3864T", "A3866G", "T3878C", "T3879A", "T3881A", "T3903C", "A3905G", "A3914T", "T3916A", "C3917T", "T3923A", "A3925T", "T3935A", "C3936A", "G3937A", "T3938A", "A3951C", "G3952A", "G3953A", "T3965A", "G3980A", "A3986G", "T3987C", "G3991A", "T3998C", "T4017C", "A4019G", "T4022C", "A4037C", "A4043G", "A4049G", "T4064A", "G4071T", "T4096A", "A4100C", "T4103G", "A4104T", "G4105C", "T4109C", "T4114C", "A4117C", "T4118C", "A4124T", "C4125A", "G4126A", "T4127A", "T4151A", "A4160G", "A4161G", "A4162G", "T4169C", "T4172C", "T4173C", "G4175T", "A4181T", "C4185T", "T4187A", "A4190G", "G4196A", "G4199A", "T4208A", "C4211T", "T4214A", "A4215G", "A4241C", "T4242C", "C4248T", "T4250A", "C4251A", "C4257A", "T4259G", "A4268C", "A4286T", "G4292A", "T4293C", "A4294T", "C4310G", "C4326T", "T4328G", "A4334C", "T4337C", "T4349A", "C4351G", "A4352T", "C4358T", "G4372A", "A4377C", "C4383T", "G4385A", "G4397A", "A4400T", "T4403C", "A4409T", "A4442G", "A4451C", "A4452C", "G4454C", "C4463G", "T4464G", "A4466T", "A4469T", "A4470G", "A4481T", "A4485C", "G4502A", "T4511A", "A4515C", "A4520G", "G4523A", "G4529A", "T4541C", "A4544T", "T4547C", "A4549C", "G4554A", "G4556T", "T4559A", "G4568A", "A4575G", "T4576C", "G4577A", "G4583A", "A4604G", "G4611T", "T4625C", "A4631T", "A4637T", "G4646A", "T4649C", "A4661T", "A4664G", "A4670G", "A4673G", "A4679G", "G4682A", "A4689G", "T4691C", "T4694A", "T4697G", "A4700G", "T4703A", "C4710A", "C4712A", "A4721G", "A4724G", "T4725C", "T4751G", "A4760T", "A4766T", "A4781T", "G4787A", "C4793T", "C4806T", "T4808G", "G4811A", "C4813G", "A4814C", "G4823A", "C4835A", "G4837A", "A4842C", "G4856A", "G4862A", "A4869G", "G4871T", "A4877G", "G4884C", "T4885A", "C4886A", "A4894G", "T4913C", "A4914T", "T4916G", "A4919T", "T4925A", "C4926A", "A4928G", "G4931A", "A4937T", "T4955C", "G4958A", "G4970A", "T4976G", "A4982G", "C4986T", "C4990A", "A4991T", "T4995C", "G4997C", "A5009G", "T5018A", "A5030T", "G5036A", "A5051T", "T5054G", "T5057A", "T5060G", "T5063A", "T5069A", "T5084G", "A5090T", "C5091T", "A5096T", "T5099C", "G5103A", "T5104C", "T5106C", "T5124C", "A5126G", "A5135G", "A5138T", "C5141T", "C5142A", "A5156T", "T5159A", "A5207G", "T5209A", "C5223T", "C5226A", "T5228A", "T5231A", "T5234C", "T5246G", "T5252C", "G5261A", "G5277T", "A5278C", "T5279A", "A5283C", "A5285G", "A5297T", "C5309A", "A5315G", "A5318C", "A5324T", "G5330A", "G5333A", "C5334A", "A5345G", "A5351G", "C5352A", "T5358C", "T5363A", "A5387T", "C5396T", "T5405A", "C5411T", "T5418C", "A5420G", "C5423T", "G5433T", "T5438A", "T5441C", "A5456G", "T5468C", "A5474T", "T5488C", "A5495T", "C5505A", "A5511C", "A5512G", "G5531A", "G5544A", "A5549G", "T5550G", "T5552A", "T5558C", "C5561T", "C5562A", "T5564A", "T5582C", "G5585A", "G5588A", "T5591C", "G5597A", "A5609T", "T5621C", "T5636C", "A5660T", "G5663C", "A5678G", "A5681T", "A5684T", "G5687A", "C5694T", "T5702A", "A5708T", "A5712G", "T5717G", "G5723A", "C5724T", "C5726G", "T5727C", "A5729T", "A5732G", "C5735T", "T5765A", "G5795A", "T5814C", "G5831A", "C5832T", "A5834G", "A5837G", "C5841T", "T5843A", "A5850C", "A5853G", "C5861A", "C5862T", "C5867T", "T5870A", "T5879A", "T5891A", "T5897C", "T5900C", "A5909T", "A5912T", "A5939G", "A5951G", "A5967G", "T5969G", "G5981T", "A5993T", "G5999T", "A6017G", "A6032G", "A6041T", "G6056A", "A6095T", "A6102G", "T6104A", "G6116A", "T6122A", "G6133A", "G6149A", "A6155C", "T6156A", "T6170G", "T6173A", "A6182G", "C6191T", "T6197G", "C6200T", "T6206A", "A6207G", "C6215T", "A6216G", "T6218G", "C6219T", "A6221G", "C6233T", "A6239T", "C6254T", "A6255G", "C6257G", "C6259T", "C6262T", "A6263T", "A6272C", "A6275T", "C6276T", "A6302G", "T6311G", "A6314G", "G6335A", "T6341C", "G6344T", "C6347T", "A6349T", "A6350T", "T6361G", "T6362A", "G6365A", "C6373T", "A6374T", "G6375T", "T6377A", "T6380A", "A6381C", "A6383T", "T6392C", "G6393A", "A6404G", "G6408A", "C6411T", "C6413G", "T6422C", "T6431A", "T6443A", "T6449A", "C6452T", "G6455T", "C6456A", "G6461A", "A6470T", "C6477T", "G6480A", "T6481C", "C6487T", "T6494C", "G6499T", "G6500A", "A6502G", "T6505C", "A6506C", "A6508T", "T6512G", "T6514A", "C6520T", "G6522A", "T6531C", "G6533A", "T6534A", "G6536T", "C6547-", "C6548-", "G6549-"], "RdRp": ["R12K", "L14Q", "I53S", "Q59E", "I70V", "N104T", "S118A", "K125H", "E130D", "V135I", "E140D", "I141V", "R144K", "K145R", "P151T", "S157M", "K200R", "T201Q", "Y224F", "N226S", "K239N", "I240L", "D241E", "I244L", "N249Q", "A265S", "I268A", "G273H", "H274Y", "L279M", "Q280S", "K281N", "N283S", "L294I", "A301V", "I316L", "N324I", "M332A", "D347E", "P363Q", "L373I", "L381S", "S384A", "L386I", "K394T", "I402T", "A409S", "I414L", "A416N", "A418S", "V420T", "Q423K", "N436H", "G438T", "M439I", "S441T", "N453S", "L460I", "K462R", "I476L", "A491S", "I539L", "S541Q", "I544L", "I554V", "V614I", "S667T", "R715K", "N735T", "I747V", "Q754N", "K758V", "L765M", "T770N", "T775A", "N776K", "E778D", "D780I", "S791V", "I813V", "K820R", "D868E", "N876F", "F913Y", "N938H", "V950S", "N1000H", "S1030G", "H1034C", "D1036N", "K1039N", "A1043S", "G1047K", "V1052T", "A1071S", "Q1083C", "Y1107F", "Q1123H", "I1135V", "V1187I", "S1216A", "A1226G", "V1257A", "V1262I", "F1282I", "F1294Y", "Y1297F", "R1301K", "R1306Q", "S1319N", "F1354Y", "H1356Q", "G1360S", "E1361A", "R1364K", "N1376G", "I1394V", "Y1420L", "T1439S", "S1440N", "R1446K", "M1448L", "L1477V", "T1479A", "N1505T", "V1507I", "M1514A", "A1526S", "E1530D", "S1552G", "A1593S", "R1601K", "M1612V", "S1616N", "V1617Q", "N1620S", "I1627L", "T1652N", "I1676V", "I1683M", "V1690T", "L1725Q", "D1748S", "K1750R", "L1767M", "Q1773K", "I1776V", "A1800S", "V1818A", "K1826R", "V1837I", "S1839A", "I1867V", "E1883D", "I1893V", "N1940D", "I1978V", "E1982D", "R2033K", "L2041I", "I2058V", "I2061V", "S2074G", "S2075L", "T2076V", "K2105I", "I2109R", "T2113I", "V2114L", "V2120I", "V2125I", "P2148S", "V2149T", "T2151I"]}, "labels": {"aa": "RdRp: R12K, L14Q, I53S, Q59E, I70V, N104T, S118A, K125H, E130D, V135I, E140D, I141V, R144K, K145R, P151T, S157M, K200R, T201Q, Y224F, N226S, K239N, I240L, D241E, I244L, N249Q, A265S, I268A, G273H, H274Y, L279M, Q280S, K281N, N283S, L294I, A301V, I316L, N324I, M332A, D347E, P363Q, L373I, L381S, S384A, L386I, K394T, I402T, A409S, I414L, A416N, A418S, V420T, Q423K, N436H, G438T, M439I, S441T, N453S, L460I, K462R, I476L, A491S, I539L, S541Q, I544L, I554V, V614I, S667T, R715K, N735T, I747V, Q754N, K758V, L765M, T770N, T775A, N776K, E778D, D780I, S791V, I813V, K820R, D868E, N876F, F913Y, N938H, V950S, N1000H, S1030G, H1034C, D1036N, K1039N, A1043S, G1047K, V1052T, A1071S, Q1083C, Y1107F, Q1123H, I1135V, V1187I, S1216A, A1226G, V1257A, V1262I, F1282I, F1294Y, Y1297F, R1301K, R1306Q, S1319N, F1354Y, H1356Q, G1360S, E1361A, R1364K, N1376G, I1394V, Y1420L, T1439S, S1440N, R1446K, M1448L, L1477V, T1479A, N1505T, V1507I, M1514A, A1526S, E1530D, S1552G, A1593S, R1601K, M1612V, S1616N, V1617Q, N1620S, I1627L, T1652N, I1676V, I1683M, V1690T, L1725Q, D1748S, K1750R, L1767M, Q1773K, I1776V, A1800S, V1818A, K1826R, V1837I, S1839A, I1867V, E1883D, I1893V, N1940D, I1978V, E1982D, R2033K, L2041I, I2058V, I2061V, S2074G, S2075L, T2076V, K2105I, I2109R, T2113I, V2114L, V2120I, V2125I, P2148S, V2149T, T2151I"}}}, {"name": "NODE_0000016", "node_attrs": {"div": 0.116601, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G77T", "T107C", "C182T", "A192G", "C209T", "C215T", "C221G", "T230C", "A254C", "A260G", "C272A", "T281C", "A285T", "A287T", "C290A", "G293A", "A294G", "T296A", "A299G", "T311C", "A312C", "T331A", "C332T", "C350G", "C374A", "A395T", "A404G", "G410A", "A424G", "A432C", "G434A", "A444C", "G445A", "G462T", "A470G", "A482G", "G493A", "T503C", "C518T", "T536C", "T539C", "A558C", "A563G", "T572G", "C590T", "T591C", "G617C", "T632A", "G647A", "A656G", "C686A", "A695T", "A701G", "T707C", "T713C", "G728A", "A737G", "T749A", "A750C", "A751G", "G770A", "G792A", "G797A", "C823G", "A824T", "T836G", "C845A", "A851G", "G864T", "G866A", "G872A", "A873C", "G878A", "T881C", "T884C", "T899A", "G914C", "C915T", "A923T", "A929G", "T956C", "T971C", "G972A", "A983T", "C986G", "G995A", "G1004A", "T1007C", "T1013A", "T1025A", "A1034T", "T1059C", "A1079G", "A1085T", "T1097C", "A1102G", "A1133G", "A1142G", "T1157A", "T1178C", "T1196C", "C1227T", "A1238G", "A1257G", "T1259G", "T1277C", "T1289A", "T1295A", "A1319T", "T1328C", "G1337A", "C1339T", "C1370A", "A1376T", "T1379A", "G1385C", "A1415T", "T1433C", "A1436T", "G1445A", "T1472A", "G1496A", "T1550C", "A1565T", "C1571T", "A1574T", "T1598A", "C1610T", "C1619T", "C1646A", "A1649G", "C1656G", "C1670T", "G1691T", "T1696C", "A1697C", "A1709T", "T1715C", "T1733C", "A1736G", "T1751C", "A1757C", "A1763G", "A1778C", "T1793C", "T1811C", "G1814A", "C1823T", "A1829T", "G1832A", "G1848A", "A1871C", "A1875G", "A1917C", "T1925G", "T1934A", "C1937A", "T1955G", "C1962T", "T1970A", "G1976A", "C1994T", "A2018T", "A2027T", "A2036T", "T2037C", "G2039A", "A2045T", "A2051G", "T2078C", "A2083G", "A2088C", "A2093G", "T2099A", "C2100T", "T2114C", "A2120G", "A2123C", "T2126A", "A2144C", "A2147T", "C2148T", "G2180A", "G2186A", "T2189C", "A2192T", "T2213C", "A2225G", "T2237G", "G2249A", "A2255T", "T2265C", "A2267T", "G2270A", "A2285T", "A2291G", "A2300G", "T2308A", "A2310C", "T2328C", "A2373G", "A2390T", "C2393T", "T2412C", "T2432C", "A2459T", "G2462A", "C2480T", "T2486C", "C2525T", "A2528C", "T2582A", "T2583C", "A2597T", "C2624T", "A2648G", "A2654T", "T2660A", "A2662C", "C2663A", "A2678G", "A2687G", "T2693C", "A2696G", "C2733T", "T2747G", "A2748C", "T2762A", "T2774C", "A2783T", "C2795G", "A2810T", "A2813T", "A2822G", "A2832G", "C2834T", "T2835C", "C2843T", "G2861A", "A2883G", "A2906T", "G2913A", "T2914G", "T2957C", "G2975A", "A2984T", "A2996G", "G3023C", "C3024T", "T3026A", "A3041G", "A3063T", "A3066C", "A3068C", "A3074T", "A3083T", "T3131A", "A3134T", "A3150G", "G3152A", "A3161G", "T3179A", "T3182C", "T3188C", "T3190A", "A3197G", "T3207C", "A3209T", "A3252G", "A3254C", "T3261C", "G3263T", "A3272G", "A3275C", "G3281A", "A3302G", "T3329A", "T3353C", "A3362G", "C3377A", "A3392G", "T3401A", "A3404G", "A3407G", "A3413G", "T3422C", "A3424T", "A3449G", "C3483T", "T3488A", "A3515T", "A3521G", "G3530A", "A3539T", "G3548A", "G3554T", "A3560T", "A3581G", "A3590T", "A3602C", "T3606C", "C3623T", "T3624C", "G3626T", "T3632G", "C3633T", "C3651T", "T3668C", "A3698T", "T3704A", "G3707A", "T3740C", "A3761T", "T3782C", "T3788A", "T3797C", "T3798C", "A3800T", "A3806G", "A3809T", "T3813G", "T3827A", "A3833T", "A3857T", "A3866T", "C3869A", "C3902T", "G3908A", "A3929G", "C3932T", "G3941A", "A3962G", "C3977T", "T4004C", "T4013C", "A4014C", "C4031T", "C4046T", "A4073T", "G4105A", "T4118G", "T4139G", "C4163T", "T4184C", "T4214C", "A4253T", "G4274A", "T4289C", "T4316C", "A4319G", "T4325A", "A4331T", "G4366C", "G4385C", "G4397T", "G4418A", "A4421G", "A4427T", "T4436C", "A4487G", "A4499T", "C4514T", "A4532T", "T4535A", "T4547A", "A4553G", "C4565T", "A4575C", "G4577T", "T4580A", "A4590G", "A4592C", "T4602C", "A4604T", "T4616C", "T4622A", "T4625G", "T4640C", "A4658T", "A4664T", "T4667C", "C4674T", "T4676A", "T4680C", "G4682T", "G4739A", "A4760G", "T4772A", "A4784T", "T4821C", "G4838A", "G4844A", "C4847T", "A4850G", "A4868T", "A4874T", "A4882G", "C4883T", "C4886T", "C4898T", "A4904G", "A4907G", "T4934C", "G4940A", "T4967A", "A4994T", "T5018G", "C5034A", "G5042A", "C5043A", "A5045G", "G5061A", "G5093C", "C5094T", "A5150C", "A5162G", "T5177C", "C5192T", "T5195C", "A5225C", "T5258A", "G5267A", "A5268G", "G5284A", "A5288G", "A5294C", "C5295T", "A5300G", "A5312C", "C5325T", "A5328C", "T5348G", "G5354A", "G5357A", "G5361A", "G5372A", "T5381C", "G5393A", "A5406C", "A5408G", "C5412T", "G5426A", "G5444A", "A5456T", "T5462G", "G5480A", "A5492G", "C5493A", "T5502C", "A5504T", "G5507T", "T5519A", "C5540A", "T5546A", "T5550A", "C5551G", "G5585T", "T5594A", "A5595C", "A5603G", "G5634A", "C5637A", "T5651A", "T5690C", "A5711T", "T5717A", "T5720A", "T5747C", "A5759C", "A5780T", "T5781C", "G5783A", "A5804T", "A5810G", "C5819T", "T5852G", "A5864C", "G5885A", "A5906T", "A5909G", "T5924C", "A5927G", "A5942G", "A5957T", "A5990T", "G6020A", "C6027T", "T6029G", "T6053G", "T6068A", "A6074T", "A6092G", "T6101C", "A6107G", "T6125G", "T6146A", "G6149T", "C6150A", "G6151A", "G6176A", "T6180C", "A6182T", "T6197A", "C6215A", "T6218C", "T6227A", "C6257T", "G6261A", "A6266T", "A6269T", "T6284A", "A6293G", "G6299A", "T6300C", "A6302T", "A6317G", "T6326A", "G6329A", "G6344A", "G6353T", "G6382A", "T6401A", "T6422A", "G6425A", "C6450T", "C6452G", "T6467C", "A6470G", "T6476C", "C6485A", "G6496A", "A6497G", "A6502T", "T6509C", "G6556A"], "RdRp": ["I53V", "T84S", "I87V", "F99Y", "M126I", "E130G", "K133Q", "S137H", "A143S", "R153K", "T201L", "K239R", "E253K", "T263S", "G273S", "E277L", "D313N", "K356R", "I408V", "V420I", "T435I", "V437A", "G438S", "E450D", "S541A", "I554T", "V605I", "K683R", "K759Q", "T775I", "N876S", "I933V", "V960S", "D1032E", "E1033D", "K1039E", "G1047N", "V1052N", "I1073V", "Y1130F", "K1258N", "S1260A", "I1264V", "S1346A", "S1357N", "G1360L", "S1444T", "M1514L", "I1519V", "E1541D", "A1593T", "D1644E", "I1745V", "V2023I", "R2039K", "E2106D", "R2116K"]}, "labels": {"aa": "RdRp: I53V, T84S, I87V, F99Y, M126I, E130G, K133Q, S137H, A143S, R153K, T201L, K239R, E253K, T263S, G273S, E277L, D313N, K356R, I408V, V420I, T435I, V437A, G438S, E450D, S541A, I554T, V605I, K683R, K759Q, T775I, N876S, I933V, V960S, D1032E, E1033D, K1039E, G1047N, V1052N, I1073V, Y1130F, K1258N, S1260A, I1264V, S1346A, S1357N, G1360L, S1444T, M1514L, I1519V, E1541D, A1593T, D1644E, I1745V, V2023I, R2039K, E2106D, R2116K"}}, "children": [{"name": "NODE_0000017", "node_attrs": {"div": 0.135968, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C47T", "T146C", "T173C", "G200A", "C344T", "T431C", "T452G", "T457C", "A542G", "A548G", "T554C", "T608A", "A677G", "T680C", "G815A", "G1047T", "C1064T", "A1072G", "A1082G", "T1085C", "A1118G", "C1190T", "C1358T", "T1386C", "G1391A", "T1517C", "T1574C", "T1590C", "A1595G", "A1646G", "T1655C", "C1661T", "T1694C", "A1712G", "A1748G", "C1757T", "A1781G", "A1784T", "T1949C", "T1958C", "T2027C", "G2033A", "A2090T", "T2117C", "T2141C", "C2165T", "T2168C", "T2177C", "A2288G", "T2294C", "A2399G", "T2405C", "T2429C", "T2504C", "T2543G", "C2547T", "A2555G", "G2753A", "G2756A", "G2831A", "T2903C", "C2987T", "A2990G", "T3039C", "C3068T", "T3098C", "G3132A", "A3146G", "T3170C", "T3218C", "C3305T", "T3344C", "T3357C", "A3359G", "T3461C", "T3684C", "A3692G", "T3818C", "T3956C", "T4010C", "A4019G", "T4061C", "T4256C", "A4271G", "A4352G", "A4354G", "C4601T", "T4703C", "T4704C", "T4808C", "T4860C", "G4931A", "T4995C", "T5000C", "T5123G", "C5225T", "A5324G", "G5333A", "A5390G", "A5501G", "A5510G", "T5625C", "G5639A", "A5651G", "C5726T", "T5780C", "A5783C", "T5792C", "A5801G", "T5984C", "T6047C", "A6086G", "T6149C", "T6164C", "T6209C", "C6219T", "C6276T", "T6290C", "G6335A", "A6389G", "T6434C"], "RdRp": ["I141T", "A338S", "K346R", "D1033N"]}, "labels": {"aa": "RdRp: I141T, A338S, K346R, D1033N"}}, "children": [{"name": "PP_006W0D9|Chile-9717869|Chile/1997-XX-XX", "node_attrs": {"div": 0.136278, "strain": {"value": "PP_006W0D9|Chile-9717869|Chile/1997-XX-XX"}, "accession": "PP_006W0D9", "author": {"author": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D.", "value": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D."}, "date": {"value": "1997-XX-XX"}, "abbr_authors": {"value": "Warner et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MT956621.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MT956621.1"}, "PPX_accession": {"value": "PP_006W0D9.1", "url": "https://pathoplexus.org/seq/PP_006W0D9.1"}, "institution": {"value": "Public Health Agency of Canada, Special Pathogens"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2021-02-27"}, "host": {"value": "mice and others"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 6563}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["G576A", "C5517A", "A6535G", "C6553A", "A6554C"], "RdRp": ["V181I", "P1828T"]}, "labels": {"aa": "RdRp: V181I, P1828T"}}}, {"name": "NODE_0000018", "node_attrs": {"div": 0.135969, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0E7|Chile-9717869|nan/XXXX-XX-XX", "node_attrs": {"div": 0.13597, "strain": {"value": "PP_006W0E7|Chile-9717869|nan/XXXX-XX-XX"}, "accession": "PP_006W0E7", "author": {"author": "Bohlman, M. C.; Borucki, M.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; St Jeor, S.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B.", "value": "Bohlman, M. C.; Borucki, M.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; St Jeor, S.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Bohlman et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "NC_003468.2", "url": "https://www.ncbi.nlm.nih.gov/nuccore/NC_003468.2"}, "PPX_accession": {"value": "PP_006W0E7.1", "url": "https://pathoplexus.org/seq/PP_006W0E7.1"}, "institution": {"value": "National Center for Biotechnology Information, NIH"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2000-10-10"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 6562}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VNZG|Chile-9717869|nan/XXXX-XX-XX", "node_attrs": {"div": 0.13597, "strain": {"value": "PP_006VNZG|Chile-9717869|nan/XXXX-XX-XX"}, "accession": "PP_006VNZG", "author": {"author": "Bohlman, M. C.; Borucki, M. K.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; Rowe, J. E.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B.", "value": "Bohlman, M. C.; Borucki, M. K.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; Rowe, J. E.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Bohlman et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "AF291704.5", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF291704.5"}, "PPX_accession": {"value": "PP_006VNZG.1", "url": "https://pathoplexus.org/seq/PP_006VNZG.1"}, "institution": {"value": "University of Nevada-Reno, Microbiology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2000-10-10"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 6562}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000019", "node_attrs": {"div": 0.131032, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C74T", "C131T", "G149A", "C155T", "A218G", "A296G", "A302G", "T329C", "C347T", "G386A", "T476C", "T488C", "T653A", "G659A", "T668C", "C699T", "T710C", "T869C", "A926G", "G1130A", "A1169G", "T1211C", "A1229G", "T1508C", "G1511T", "C1657T", "A1658G", "T1745C", "G1892A", "T1907C", "A1988G", "T2204C", "A2306G", "G2426A", "T2439C", "G2444A", "C2492T", "T2540C", "G2585A", "G2600A", "A2618G", "T2684C", "T2751C", "T2807C", "G2846A", "C2957A", "T3089C", "T3155C", "C3203T", "G3287A", "G3341A", "C3482T", "T3500C", "T3536C", "A3728G", "G3863A", "T3944A", "G3953A", "A4100G", "T4250C", "A4361G", "T4412C", "G4553T", "G4583A", "C4629T", "A4655G", "A4670G", "A4679G", "A4721G", "A4775G", "T4976C", "T5057G", "A5165G", "T5247C", "A5315G", "C5334T", "C5489T", "T5558G", "T5702C", "G5999A", "A6044G", "A6098G", "A6113G", "A6360G", "A6372G", "A6386G", "A6513G"], "RdRp": ["A541V", "D1303E", "I2109V", "T2113A"]}, "labels": {"aa": "RdRp: A541V, D1303E, I2109V, T2113A"}}, "children": [{"name": "PP_006W0AF|ARCH14/NRC1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.157264, "strain": {"value": "PP_006W0AF|ARCH14/NRC1|nan/XXXX-XX-XX"}, "accession": "PP_006W0AF", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN850096.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850096.1"}, "PPX_accession": {"value": "PP_006W0AF.1", "url": "https://pathoplexus.org/seq/PP_006W0AF.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 6531}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["G119A", "C137T", "C219T", "T338C", "A341G", "T353C", "C390A", "T398C", "A422G", "G482A", "C503T", "C566T", "G581A", "G635A", "G701A", "A704G", "G737A", "C750A", "T782C", "A794G", "A797G", "G853C", "A866G", "G875A", "G986A", "A1046T", "A1115G", "A1130T", "T1172C", "C1178T", "A1184G", "T1199C", "A1223G", "T1247C", "T1265C", "C1277T", "G1348A", "A1370T", "A1373G", "T1424C", "T1520C", "A1589G", "A1601G", "C1622T", "T1637C", "T1823C", "C1862T", "G1877T", "C1913T", "T1922C", "G1946A", "T1952C", "A1967G", "A2012G", "C2078T", "G2120A", "C2123T", "T2159C", "A2171G", "C2360T", "A2369G", "T2393C", "A2408G", "G2411A", "T2501C", "C2516T", "G2666A", "A2669G", "A2672G", "A2699G", "A2735G", "T2771C", "T2816C", "T2879C", "A2882G", "A2936G", "A2963G", "C3110T", "A3140G", "A3190G", "T3191C", "A3200G", "T3242C", "A3257G", "A3329G", "T3335C", "A3380T", "A3473G", "A3548G", "T3551C", "T3615C", "C3641T", "T3698C", "G3749A", "T3770C", "A3848G", "T3926C", "A4001G", "C4013T", "T4103A", "T4106C", "G4139A", "T4242C", "T4259C", "T4277C", "C4358T", "A4433G", "A4493G", "A4520G", "T4550C", "G4556A", "T4559C", "C4575T", "T4577A", "A4580C", "C4619T", "A4643G", "A4727G", "T4826C", "C4934T", "A4982G", "A4991T", "A5043C", "A5147G", "C5195T", "G5300A", "A5303G", "T5306C", "C5396A", "G5417A", "A5429T", "G5453A", "G5462A", "G5627A", "G5654A", "A5708G", "C5735T", "T5738C", "C5759T", "T5828C", "T5835C", "A5846T", "A5888C", "T5906A", "G5930A", "G6053A", "G6056A", "G6092A", "A6137G", "A6140G", "A6161G", "C6254T", "T6291C", "G6365A", "A6425G", "C6428T", "T6473C"], "RdRp": ["S273T", "S438N", "N1052S", "H1356Q", "S1440N"]}, "labels": {"aa": "RdRp: S273T, S438N, N1052S, H1356Q, S1440N"}}}, {"name": "NODE_0000020", "node_attrs": {"div": 0.140357, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T297C", "T326C", "A686G", "C758T", "A860G", "T865C", "C884T", "A893G", "A899G", "A944G", "G1040A", "C1146T", "G1148A", "T1418G", "T1529C", "A1634G", "C1697T", "C1751T", "C1859T", "C1871A", "A1883G", "A2039G", "A2090C", "C2114T", "G2373A", "T2390C", "C2528T", "A2561G", "G2579A", "T2978C", "C3023T", "A3038G", "A3236G", "G3479A", "C3602A", "G3608A", "G3806A", "A4190G", "T4217C", "A4244G", "A4265G", "A4268G", "T4349C", "A4517G", "T4634C", "G4856A", "A4949G", "G5012A", "A5090G", "A5284G", "G5588A", "A5606G", "G5723A", "G5831A", "C5861T", "T5975C", "T5987C", "G6107A", "C6179T"], "RdRp": ["L277S", "D780N", "K1750R"]}, "labels": {"aa": "RdRp: L277S, D780N, K1750R"}}, "children": [{"name": "NODE_0000021", "node_attrs": {"div": 0.148884, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A374G", "A749G", "G935A", "A1082G", "A1226G", "A1239G", "T1566C", "G1616A", "C1622T", "G1649A", "T1709C", "G1766A", "C1817T", "A1973G", "A2258G", "A2345G", "A2423G", "A2483G", "A3065G", "G3215A", "G3302A", "C3305T", "A3488G", "A3569G", "T3629C", "C3668T", "T3881C", "G3896A", "T3903C", "T4010C", "A4354G", "C4508T", "T4577C", "G4625A", "A4661G", "T4860C", "T4910C", "G5028A", "A5072G", "A5105G", "T5123G", "T5246C", "T5252C", "T5270C", "C5309T", "C5423T", "A5615G", "T5969C", "T6206C", "T6281C", "G6335A", "T6434C"], "RdRp": ["I402V", "V1665I"]}, "labels": {"aa": "RdRp: I402V, V1665I"}}, "children": [{"name": "NODE_0000022", "node_attrs": {"div": 0.154966, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G560A", "C566T", "G836A", "G851A", "C1466T", "T1657C", "G1658A", "C1745A", "T1949C", "G2252A", "A2447G", "T2654C", "A2672G", "C2726T", "G2930A", "T2981C", "T3039C", "A3221G", "T3266C", "G3509A", "G3752A", "A4181G", "C4463T", "A4766G", "C4821T", "C4835T", "A5009G", "T5231C", "G5597A", "T5636C", "G5639A", "C5735T", "T6251C", "T6449C", "G6455A"], "RdRp": ["V541A"]}, "labels": {"aa": "RdRp: V541A"}}, "children": [{"name": "NODE_0000023", "node_attrs": {"div": 0.165623, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T216C", "A314G", "A389G", "G407A", "C446T", "G482A", "A506G", "T545C", "A560T", "A764G", "C776T", "G779A", "C821T", "A935G", "G1061A", "T1088C", "T1094C", "C1097T", "G1229A", "C1385T", "G1388A", "T1400C", "T1424C", "C1433T", "G1439A", "C1475T", "A1616G", "A1739G", "G1985A", "A2057G", "T2132C", "C2165T", "A2222G", "G2291A", "A2498G", "G2549T", "C2621T", "A2804G", "T3024C", "G3458A", "C3606T", "C3701T", "T3923C", "G3995A", "C4010T", "C4013T", "T4088C", "T4106C", "A4166G", "C4217T", "G4244A", "T4511A", "G4655A", "G4742A", "T4925C", "T4994C", "T5039C", "A5259C", "A5360G", "G5615A", "A5657G", "A5744G", "C5759T", "T5948C", "T5957C", "C5969T", "C5987T", "C6248T", "T6359C"]}}, "children": [{"name": "PP_006VQHC|CHI-7913|Chile/XXXX-XX-XX", "node_attrs": {"div": 0.169481, "strain": {"value": "PP_006VQHC|CHI-7913|Chile/XXXX-XX-XX"}, "accession": "PP_006VQHC", "author": {"author": "Tischler, N. D.; Fernandez, J.; Muller, I.; Martinez, R.; Galeno, H.; Villagra, E.; Mora, J.; Ramirez, E.; Rosemblatt, M.; Valenzuela, P. D.; Mueller, I.; Valenzuela, P. D. T.", "value": "Tischler, N. D.; Fernandez, J.; Muller, I.; Martinez, R.; Galeno, H.; Villagra, E.; Mora, J.; Ramirez, E.; Rosemblatt, M.; Valenzuela, P. D.; Mueller, I.; Valenzuela, P. D. T."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tischler et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "AY228239.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AY228239.1"}, "PPX_accession": {"value": "PP_006VQHC.1", "url": "https://pathoplexus.org/seq/PP_006VQHC.1"}, "institution": {"value": "Fundacion Ciencia para la Vida, Departamento de Desarrollo e Investigacion"}, "totalAmbiguousNucs": {"value": 1}, "date_released": {"value": "2003-05-01"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 6466}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["C47T", "A474C", "G657A", "T846C", "T991C", "A1838C", "T2100C", "A2534G", "T2543C", "A2697G", "T3274C", "A3401T", "A3448G", "T3470C", "T3681C", "T4067C", "A4745G", "A5573G", "G5631A", "A5734T", "A5865G", "G6044A", "C6051T", "A6358G", "T6427C"], "RdRp": ["N147H", "E208K", "F271L", "L319P", "R888G", "V1080A", "E1138G", "S1216P", "D1866N", "N1900I", "N1944D", "D2108G", "F2131S"]}, "labels": {"aa": "RdRp: N147H, E208K, F271L, L319P, R888G, V1080A, E1138G, S1216P, D1866N, N1900I, N1944D, D2108G, F2131S"}}}, {"name": "NODE_0000024", "node_attrs": {"div": 0.165808, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A4988G"]}}, "children": [{"name": "PP_006W2HY|CHI-7913|Chile/1999-XX-XX", "node_attrs": {"div": 0.165809, "strain": {"value": "PP_006W2HY|CHI-7913|Chile/1999-XX-XX"}, "accession": "PP_006W2HY", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "date": {"value": "1999-XX-XX"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PV808472.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808472.1"}, "PPX_accession": {"value": "PP_006W2HY.1", "url": "https://pathoplexus.org/seq/PP_006W2HY.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 6561}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0CB|CHI-7913|Chile/1999-XX-XX", "node_attrs": {"div": 0.165809, "strain": {"value": "PP_006W0CB|CHI-7913|Chile/1999-XX-XX"}, "accession": "PP_006W0CB", "author": {"author": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D.", "value": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D."}, "date": {"value": "1999-XX-XX"}, "abbr_authors": {"value": "Warner et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MT956620.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MT956620.1"}, "PPX_accession": {"value": "PP_006W0CB.1", "url": "https://pathoplexus.org/seq/PP_006W0CB.1"}, "institution": {"value": "Public Health Agency of Canada, Special Pathogens"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2021-02-27"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 6466}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000025", "node_attrs": {"div": 0.155819, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G803A", "G2531A", "C4634T", "A5126G", "G5852A"]}}, "children": [{"name": "PP_006VZ3Y|NRC-2/97_06/01/1996|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169445, "strain": {"value": "PP_006VZ3Y|NRC-2/97_06/01/1996|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ3Y", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258157.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258157.1"}, "PPX_accession": {"value": "PP_006VZ3Y.1", "url": "https://pathoplexus.org/seq/PP_006VZ3Y.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6542}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["T122C", "A167G", "G218A", "C230T", "A293G", "C311T", "C329T", "T347C", "A638G", "T804C", "A809G", "C821T", "G899A", "G926A", "A992G", "C1178T", "C1358T", "T1389C", "A1397G", "C1433T", "C1475T", "T1517C", "A1572G", "C1679T", "T1740C", "G1763A", "T1802C", "T1823C", "G2258A", "A2303G", "G2306A", "G2333A", "A2366T", "C2432T", "A2450G", "C2474T", "T2543C", "T2603C", "A2690G", "C3089T", "C3110T", "T3285C", "A3377G", "T3389C", "G3404T", "G3581A", "T3603C", "A3656T", "A3716G", "G3728A", "C3797T", "T3854C", "C3903T", "A3905G", "T3971C", "T4034C", "G4118A", "A4164C", "A4238G", "A4286G", "C4289T", "A4418G", "T4424C", "T4574C", "T4604A", "C4619T", "T4674C", "C4929T", "T4994C", "G5123T", "G5183A", "G5198A", "T5279C", "T5471C", "T5604C", "G5654A", "A5657G", "A5712G", "C5759T", "T5843C", "G5942A", "T6089A", "A6134G", "T6164C", "A6228C", "C6233T", "A6299G", "T6377C"], "RdRp": ["F257L", "I513V", "Q1123H", "I1893V"]}, "labels": {"aa": "RdRp: F257L, I513V, Q1123H, I1893V"}}}, {"name": "NODE_0000026", "node_attrs": {"div": 0.158822, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G701A", "C738T", "A1010G", "C1508T", "A1649G", "T2468G", "C2774T", "A2975T", "T3218C", "G3269A", "A3635G", "T3960C", "A5387G", "C5411T", "A5588G", "C5747T", "G6116A", "C6347T", "C6428T"]}}, "children": [{"name": "PP_006VZ6S|NRC-5/18_06/01/2018|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.172584, "strain": {"value": "PP_006VZ6S|NRC-5/18_06/01/2018|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ6S", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258160.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258160.1"}, "PPX_accession": {"value": "PP_006VZ6S.1", "url": "https://pathoplexus.org/seq/PP_006VZ6S.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6539}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["C137T", "T215C", "C297T", "G374C", "A464G", "G467A", "A515C", "C591T", "G644A", "T680C", "G749A", "A802G", "G853A", "A866G", "G875A", "G893A", "G929A", "G944T", "A995G", "T1058C", "A1103G", "A1289G", "G1344A", "C1709T", "C1757T", "C1907T", "T2063C", "T2087C", "C2090T", "A2186G", "G2306A", "C2390T", "C2412T", "C2439T", "T2453C", "G2483A", "G2568T", "C2654T", "T2726C", "G2747A", "G2831A", "C3035T", "G3221A", "A3257G", "T3470C", "G3728A", "A3731G", "C3740T", "C3782T", "T3785C", "A3815G", "G3929A", "T4028C", "C4184T", "C4211T", "C4214T", "G4235A", "G4244A", "T4346C", "C4412T", "T4550C", "C4562T", "A4622G", "G4770A", "G4931A", "G4949A", "T5069C", "T5081C", "A5144G", "G5165A", "C5222T", "C5231T", "C5247T", "A5414G", "C5600T", "A5639G", "C5690T", "G5816A", "C5924T", "A5999G", "A6020G", "C6051T", "T6185C", "G6212A", "G6398A", "T6443C"], "RdRp": ["K256R", "S273N", "A437T", "A845S", "V1579I"]}, "labels": {"aa": "RdRp: K256R, S273N, A437T, A845S, V1579I"}}}, {"name": "NODE_0000027", "node_attrs": {"div": 0.169716, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C47T", "G266A", "A320G", "T348C", "G482A", "A740G", "A764G", "T839C", "T870C", "T915C", "T959C", "C971T", "T1067C", "G1133A", "A1163G", "T1247C", "T1319G", "G1388A", "T1571C", "A1580G", "C1679T", "C1979T", "A2003T", "T2114C", "C2123A", "A2357G", "A2414G", "C2474T", "C2486T", "T2504C", "T2528G", "T2661G", "T2720C", "T2723C", "A3008G", "T3023C", "G3236T", "T3290C", "A3368G", "G3458A", "C3486T", "A3617G", "C3641T", "A3719G", "G3803A", "T3854C", "T4088C", "C4349T", "A4370G", "G4502A", "G4517A", "T4694A", "C4722T", "G4742A", "T4808C", "C4910T", "T5054C", "G5090A", "C5093T", "A5360G", "G5558A", "T5798C", "G5810A", "T5903C", "C6219T", "T6291C", "A6305G", "A6314C", "A6320T", "C6467T"], "RdRp": ["S876A"]}, "labels": {"aa": "RdRp: S876A"}}, "children": [{"name": "PP_006VX9N|ANDV LS-CH-2016|Switzerland/2016-12-26", "node_attrs": {"div": 0.17274, "strain": {"value": "PP_006VX9N|ANDV LS-CH-2016|Switzerland/2016-12-26"}, "accession": "PP_006VX9N", "author": {"author": "Beuret, C. M.; Siegrist, D.", "value": "Beuret, C. M.; Siegrist, D."}, "date": {"value": "2016-12-26"}, "abbr_authors": {"value": "Beuret et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "KY659431.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/KY659431.1"}, "PPX_accession": {"value": "PP_006VX9N.1", "url": "https://pathoplexus.org/seq/PP_006VX9N.1"}, "institution": {"value": "Spiez Laboratory, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-01-29"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Switzerland"}, "region": {"value": "Europe"}, "length": {"value": 6470}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["G1010A", "T1361A", "T1364C", "C1385T", "T1400C", "T1424C", "C1433T", "G1439A", "C1475T", "T1508C", "C3881T", "A3885T", "T4641C", "A4666G", "T4875C", "T4936A", "T5860C", "T6274A", "T6277A"], "RdRp": ["M1284L", "Y1544C", "I1634K", "I1942T", "L2080Q", "L2081Q"]}, "labels": {"aa": "RdRp: M1284L, Y1544C, I1634K, I1942T, L2080Q, L2081Q"}}}, {"name": "NODE_0000028", "node_attrs": {"div": 0.169947, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T1389C"]}}, "children": [{"name": "PP_006W0X6|ANDV-CH-LS-2016|Switzerland/2016-XX-XX", "node_attrs": {"div": 0.170116, "strain": {"value": "PP_006W0X6|ANDV-CH-LS-2016|Switzerland/2016-XX-XX"}, "accession": "PP_006W0X6", "author": {"author": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N.", "value": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N."}, "date": {"value": "2016-XX-XX"}, "abbr_authors": {"value": "Zuest et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "OR405523.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR405523.1"}, "PPX_accession": {"value": "PP_006W0X6.1", "url": "https://pathoplexus.org/seq/PP_006W0X6.1"}, "institution": {"value": "Spiez Laboratory, Biology Department"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-02"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Switzerland"}, "region": {"value": "Europe"}, "length": {"value": 5924}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["G3940A"], "RdRp": ["R1302K"]}, "labels": {"aa": "RdRp: R1302K"}}}, {"name": "PP_006W0W8|ANDV-CH-LS-2022|Switzerland/2022-XX-XX", "node_attrs": {"div": 0.169948, "strain": {"value": "PP_006W0W8|ANDV-CH-LS-2022|Switzerland/2022-XX-XX"}, "accession": "PP_006W0W8", "author": {"author": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N.", "value": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N."}, "date": {"value": "2022-XX-XX"}, "abbr_authors": {"value": "Zuest et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "OR405522.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR405522.1"}, "PPX_accession": {"value": "PP_006W0W8.1", "url": "https://pathoplexus.org/seq/PP_006W0W8.1"}, "institution": {"value": "Spiez Laboratory, Biology Department"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-02"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Switzerland"}, "region": {"value": "Europe"}, "length": {"value": 6244}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}, {"name": "NODE_0000029", "node_attrs": {"div": 0.156649, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C147T", "T182C", "T215C", "A233C", "T359C", "T458C", "A618C", "C1328T", "A1379G", "T1382C", "G1736A", "A1781G", "C1793T", "A1841G", "T1910C", "G2120T", "C2165T", "C2360T", "A2408G", "G2753A", "C2774T", "G2858A", "C3032T", "T3191C", "C3422T", "A3530T", "C3536T", "A3665G", "T3965C", "C4385T", "G4487A", "A4700G", "G4721A", "A4889G", "C4929T", "C4976T", "A5189G", "A5204C", "G5327A", "A5345G", "C5406A", "G5627A", "C5702T", "T5711C", "T5804C", "G6029A", "G6113A", "T6290C", "C6347T", "G6398A"], "RdRp": ["R144K"]}, "labels": {"aa": "RdRp: R144K"}}, "children": [{"name": "NODE_0000030", "node_attrs": {"div": 0.165274, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C137T", "C428T", "A434G", "T452C", "G466A", "C539T", "G920A", "T1067C", "C1307T", "T1436C", "T1706C", "A1991T", "T2183C", "T2210C", "A2246G", "T2276C", "C2328T", "T2363C", "T2405G", "C2547T", "G2651A", "A2690G", "A2780G", "T2783C", "C2918T", "C3188T", "A3398G", "T3560C", "C3629T", "A3692G", "T3722A", "C3881T", "G3884A", "T4103C", "T4346C", "T4508C", "C4667T", "C4722T", "T5111C", "A5156G", "T5159C", "A5201G", "T5213C", "T5228C", "T5237C", "G5261A", "C5294T", "C5534T", "C5735T", "C5997T", "G6143A", "A6299G", "A6374T", "T6450C", "A6482C"]}}, "children": [{"name": "NODE_0000031", "node_attrs": {"div": 0.170846, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C446T", "C458T", "C488T", "A674G", "C713T", "A1148G", "G1274A", "A1310G", "C1661T", "A1739G", "G1776T", "C1910T", "G1964A", "A2243G", "A2336G", "C2390T", "G2402A", "A2579G", "A2612G", "T2720C", "C2987T", "G3236A", "G3272A", "T3638C", "T4385A", "G4778A", "G5018A", "G5057A", "G5072A", "C5111G", "A5144G", "C5247T", "A5519G", "A6134G", "C6200T", "T6257C"], "RdRp": ["A581S"]}, "labels": {"aa": "RdRp: A581S"}}, "children": [{"name": "PP_006W2F3|136|Chile/2024-06-27", "node_attrs": {"div": 0.170847, "strain": {"value": "PP_006W2F3|136|Chile/2024-06-27"}, "accession": "PP_006W2F3", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "date": {"value": "2024-06-27"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PV796318.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV796318.1"}, "PPX_accession": {"value": "PP_006W2F3.1", "url": "https://pathoplexus.org/seq/PP_006W2F3.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Chile"}, "division": {"value": "Los Rios CL"}, "region": {"value": "South America"}, "length": {"value": 6556}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000032", "node_attrs": {"div": 0.170847, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2KU|CHI-Hu13724_P2|Chile/2024-07-30", "node_attrs": {"div": 0.170847, "strain": {"value": "PP_006W2KU|CHI-Hu13724_P2|Chile/2024-07-30"}, "accession": "PP_006W2KU", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "date": {"value": "2024-07-30"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PV808478.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808478.1"}, "PPX_accession": {"value": "PP_006W2KU.1", "url": "https://pathoplexus.org/seq/PP_006W2KU.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 6555}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000033", "node_attrs": {"div": 0.170847, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2G1|137|Chile/2024-06-27", "node_attrs": {"div": 0.170847, "strain": {"value": "PP_006W2G1|137|Chile/2024-06-27"}, "accession": "PP_006W2G1", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "date": {"value": "2024-06-27"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PV808469.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808469.1"}, "PPX_accession": {"value": "PP_006W2G1.1", "url": "https://pathoplexus.org/seq/PP_006W2G1.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Chile"}, "division": {"value": "Los Rios CL"}, "region": {"value": "South America"}, "length": {"value": 6549}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W2JW|CHI-Hu13724_P1|Chile/2024-07-24", "node_attrs": {"div": 0.170847, "strain": {"value": "PP_006W2JW|CHI-Hu13724_P1|Chile/2024-07-24"}, "accession": "PP_006W2JW", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "date": {"value": "2024-07-24"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PV808475.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808475.1"}, "PPX_accession": {"value": "PP_006W2JW.1", "url": "https://pathoplexus.org/seq/PP_006W2JW.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 6562}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000034", "node_attrs": {"div": 0.168361, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T155C", "T269C", "G470A", "A542G", "G563A", "G803A", "T989C", "A1187C", "C1358T", "C1470T", "C1733T", "G1946A", "A2072G", "T2429C", "A3722G", "G5045A", "C5195T", "T5231C", "A5285G"]}}, "children": [{"name": "PP_006W0QL|Andes/ARG_p3|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.168362, "strain": {"value": "PP_006W0QL|Andes/ARG_p3|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0QL", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "OP555732.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555732.1"}, "PPX_accession": {"value": "PP_006W0QL.1", "url": "https://pathoplexus.org/seq/PP_006W0QL.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6544}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000035", "node_attrs": {"div": 0.168671, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C3560T", "A3920G"], "RdRp": ["I1295M"]}, "labels": {"aa": "RdRp: I1295M"}}, "children": [{"name": "PP_006W0SG|Andes/ARG_p19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.168826, "strain": {"value": "PP_006W0SG|Andes/ARG_p19|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0SG", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "OP555734.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555734.1"}, "PPX_accession": {"value": "PP_006W0SG.1", "url": "https://pathoplexus.org/seq/PP_006W0SG.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6475}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["C5058T"], "RdRp": ["P1675S"]}, "labels": {"aa": "RdRp: P1675S"}}}, {"name": "NODE_0000036", "node_attrs": {"div": 0.168672, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0TE|Andes/ARG-M.a.|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.168673, "strain": {"value": "PP_006W0TE|Andes/ARG-M.a.|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0TE", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "OP555735.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555735.1"}, "PPX_accession": {"value": "PP_006W0TE.1", "url": "https://pathoplexus.org/seq/PP_006W0TE.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "host": {"value": "Syrian golden hamster; Syrian golden hamsters; Syrian hamster; golden hamster"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6462}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["T28G"]}}}, {"name": "PP_006W0RJ|Andes/ARG_p9|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.168673, "strain": {"value": "PP_006W0RJ|Andes/ARG_p9|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0RJ", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "OP555733.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555733.1"}, "PPX_accession": {"value": "PP_006W0RJ.1", "url": "https://pathoplexus.org/seq/PP_006W0RJ.1"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6475}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000037", "node_attrs": {"div": 0.162491, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G200A", "T278C", "G404A", "T557C", "G1142A", "C1512T", "C1679T", "C2474T", "T2543C", "C2583T", "A2699G", "A2759C", "A2765G", "T2894C", "A3008G", "T3053C", "C3155T", "T3167C", "G3236A", "T3242C", "A3281G", "T3357C", "A3704G", "C3845T", "C4211T", "A4472G", "A4544G", "C4712T", "C4910T", "T4994C", "A5126G", "T5441C", "C5864T", "T5948C", "T6179C", "A6284G", "G6360A", "C6434T"], "RdRp": ["V2109I"]}, "labels": {"aa": "RdRp: V2109I"}}, "children": [{"name": "NODE_0000038", "node_attrs": {"div": 0.16756, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A243G", "T371C", "G466A", "G1061A", "T1094C", "A1118G", "A1205G", "A1526G", "A1562G", "C1661T", "T1829C", "A1967G", "T2192C", "A2201T", "A3221G", "T3371C", "A3779G", "T3866C", "A4220G", "G4322A", "T4391C", "C4463T", "A4844G", "A4991G", "C5225T", "G5615A", "A5693G", "T5891A", "T5900C", "G6098A", "C6101T", "C6476T", "G6533A"], "RdRp": ["I70V"]}, "labels": {"aa": "RdRp: I70V"}}, "children": [{"name": "PP_006VZ5U|NRC-4/18_06/01/2018|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.167561, "strain": {"value": "PP_006VZ5U|NRC-4/18_06/01/2018|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ5U", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258159.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258159.1"}, "PPX_accession": {"value": "PP_006VZ5U.1", "url": "https://pathoplexus.org/seq/PP_006VZ5U.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6545}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZ4W|NRC-3/18_06/01/1997|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.167561, "strain": {"value": "PP_006VZ4W|NRC-3/18_06/01/1997|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ4W", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258158.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258158.1"}, "PPX_accession": {"value": "PP_006VZ4W.1", "url": "https://pathoplexus.org/seq/PP_006VZ4W.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6540}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000039", "node_attrs": {"div": 0.170086, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {"nuc": ["G62A", "T68G", "T332C", "A461G", "C488T", "A650G", "A704G", "A842G", "G968A", "C1211T", "A1223G", "A1283G", "C1382T", "T1740C", "C1745T", "C1923T", "G1961A", "G2411A", "A2414G", "A2441G", "G2483A", "A2627T", "G2927A", "T3125C", "T3170C", "T3263C", "T3437A", "G3521A", "T3560C", "G3581A", "A3716G", "T3833C", "A3848G", "T4427C", "G4556A", "T4751C", "G4787A", "G4889A", "C5195T", "C5270T", "A5669T", "G5687A", "T5777C", "T5835C", "T6173C", "G6212A", "C6219T", "T6302C", "C6428T"], "RdRp": ["K144R"]}, "labels": {"aa": "RdRp: K144R", "outbreak": "2026-Hondius"}}, "children": [{"name": "PP_006WDKH|PP_006WDKH|South Africa/2026-04-26", "node_attrs": {"div": 0.170088, "strain": {"value": "PP_006WDKH|PP_006WDKH|South Africa/2026-04-26"}, "accession": "PP_006WDKH", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "date": {"value": "2026-04-26"}, "abbr_authors": {"value": "Weyer et al."}, "outbreak": {"value": "2026-Hondius"}, "PPX_accession": {"value": "PP_006WDKH.1", "url": "https://pathoplexus.org/seq/PP_006WDKH.1"}, "institution": {"value": "National Institute of Communicable Diseases"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-12"}, "host": {"value": "human"}, "restrictedUntil": {"value": "2027-05-12"}, "country": {"value": "South Africa"}, "region": {"value": "Africa"}, "length": {"value": 6478}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}}, "branch_attrs": {"mutations": {"nuc": ["A10G"]}}}, {"name": "NODE_0000040", "node_attrs": {"div": 0.17024, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {"nuc": ["A3437G"]}}, "children": [{"name": "NODE_0000041", "node_attrs": {"div": 0.170241, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006WANE|PP_006WANE|South Africa/2026-05-02", "node_attrs": {"div": 0.170242, "strain": {"value": "PP_006WANE|PP_006WANE|South Africa/2026-05-02"}, "accession": "PP_006WANE", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "date": {"value": "2026-05-02"}, "abbr_authors": {"value": "Weyer et al."}, "outbreak": {"value": "2026-Hondius"}, "PPX_accession": {"value": "PP_006WANE.2", "url": "https://pathoplexus.org/seq/PP_006WANE.2"}, "institution": {"value": "National Institute of Communicable Diseases"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-11"}, "host": {"value": "human"}, "restrictedUntil": {"value": "2027-05-11"}, "country": {"value": "South Africa"}, "region": {"value": "Africa"}, "length": {"value": 6528}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006WDJK|PP_006WDJK|South Africa/2026-05-02", "node_attrs": {"div": 0.170242, "strain": {"value": "PP_006WDJK|PP_006WDJK|South Africa/2026-05-02"}, "accession": "PP_006WDJK", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "date": {"value": "2026-05-02"}, "abbr_authors": {"value": "Weyer et al."}, "outbreak": {"value": "2026-Hondius"}, "PPX_accession": {"value": "PP_006WDJK.1", "url": "https://pathoplexus.org/seq/PP_006WDJK.1"}, "institution": {"value": "National Institute of Communicable Diseases"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-12"}, "host": {"value": "human"}, "restrictedUntil": {"value": "2027-05-12"}, "country": {"value": "South Africa"}, "region": {"value": "Africa"}, "length": {"value": 6528}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000042", "node_attrs": {"div": 0.170241, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006WBLH|ANDV/Switzerland/Hu-3337/2026|Switzerland/2026-05-04", "node_attrs": {"div": 0.170242, "strain": {"value": "PP_006WBLH|ANDV/Switzerland/Hu-3337/2026|Switzerland/2026-05-04"}, "accession": "PP_006WBLH", "author": {"author": "Bloemberg, G.; Chudzinski, V.; Cordey, S.; Huber, M.; Laubscher, F.; Perez-Rodriguez, F.-J.; Pichler, I.; Schibler, M.; Thomasson, V.; Ziltener, G.", "value": "Bloemberg, G.; Chudzinski, V.; Cordey, S.; Huber, M.; Laubscher, F.; Perez-Rodriguez, F.-J.; Pichler, I.; Schibler, M.; Thomasson, V.; Ziltener, G."}, "date": {"value": "2026-05-04"}, "abbr_authors": {"value": "Bloemberg et al."}, "outbreak": {"value": "2026-Hondius"}, "INSDC_accession": {"value": "PZ385161.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PZ385161.1"}, "PPX_accession": {"value": "PP_006WBLH.1", "url": "https://pathoplexus.org/seq/PP_006WBLH.1"}, "institution": {"value": "University Hospitals of Geneva, Laboratory of Virology"}, "totalAmbiguousNucs": {"value": 1}, "date_released": {"value": "2026-05-11"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Switzerland"}, "region": {"value": "Europe"}, "length": {"value": 6561}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000043", "node_attrs": {"div": 0.170242, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W3U9|PP_006W3U9|Netherlands/2026-05-06", "node_attrs": {"div": 0.170243, "strain": {"value": "PP_006W3U9|PP_006W3U9|Netherlands/2026-05-06"}, "accession": "PP_006W3U9", "author": {"author": "Oude Munnink, B. B.; Nieuwenhuijsse, D.; van der Boom, S.; Zaeck, L.; Boter, M.; Cassidy, H.; Schuele, L.; Molenkamp, R.; van der Eijk, A.; GeurtsvanKessel, C.; Koopmans, M.", "value": "Oude Munnink, B. B.; Nieuwenhuijsse, D.; van der Boom, S.; Zaeck, L.; Boter, M.; Cassidy, H.; Schuele, L.; Molenkamp, R.; van der Eijk, A.; GeurtsvanKessel, C.; Koopmans, M."}, "date": {"value": "2026-05-06"}, "abbr_authors": {"value": "Oude Munnink et al."}, "outbreak": {"value": "2026-Hondius"}, "PPX_accession": {"value": "PP_006W3U9.1", "url": "https://pathoplexus.org/seq/PP_006W3U9.1"}, "institution": {"value": "ErasmusMC"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-10"}, "host": {"value": "human"}, "restrictedUntil": {"value": "2027-05-10"}, "country": {"value": "Netherlands"}, "region": {"value": "Europe"}, "length": {"value": 6456}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W6RC|PP_006W6RC|Netherlands/2026-05-03", "node_attrs": {"div": 0.170243, "strain": {"value": "PP_006W6RC|PP_006W6RC|Netherlands/2026-05-03"}, "accession": "PP_006W6RC", "author": {"author": "Diagne, Moussa Moise; Sankhe, Safietou; Ndiaye, Ndeye Awa; Kane, Mouhamed; Diop, Seynabou M. B. S.; Seye, Seynabou; Fall, Gamou", "value": "Diagne, Moussa Moise; Sankhe, Safietou; Ndiaye, Ndeye Awa; Kane, Mouhamed; Diop, Seynabou M. B. S.; Seye, Seynabou; Fall, Gamou"}, "date": {"value": "2026-05-03"}, "abbr_authors": {"value": "Diagne et al."}, "outbreak": {"value": "2026-Hondius"}, "PPX_accession": {"value": "PP_006W6RC.2", "url": "https://pathoplexus.org/seq/PP_006W6RC.2"}, "institution": {"value": "Institut Pasteur de Dakar"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-11"}, "host": {"value": "human"}, "restrictedUntil": {"value": "2027-05-11"}, "country": {"value": "Netherlands"}, "region": {"value": "Europe"}, "length": {"value": 6456}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}, {"name": "NODE_0000044", "node_attrs": {"div": 0.158996, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G53A", "T173C", "T182C", "T269C", "C329T", "T338C", "A341C", "A425T", "A455G", "A456G", "G509A", "T512G", "G560A", "T626C", "T654C", "G926A", "A1016G", "T1088C", "C1097T", "T1124C", "A1126G", "G1169A", "C1178A", "C1241T", "C1250T", "G1259A", "T1265C", "T1376C", "A1538G", "A1592G", "A1652T", "G1676A", "C1679T", "T1724C", "T1737C", "G1742A", "A1748G", "T1898C", "C1907T", "G1961A", "T1965C", "T2174C", "T2177C", "T2184C", "T2241C", "T2255C", "T2468C", "T2501C", "T2525C", "T2543C", "C2547T", "C2621T", "G2651A", "T2661G", "C2726T", "A2882G", "T2993C", "G3041A", "C3071T", "G3101A", "A3164G", "A3194G", "T3357C", "G3413A", "T3497C", "A3530G", "T3563C", "C3587T", "T3590C", "T3611C", "A3653G", "A3665G", "A3686G", "A3707G", "A3779G", "A3848G", "G3884A", "A3959C", "G4118A", "A4166G", "T4550C", "C4562T", "C4592T", "A4622G", "G4679A", "T4685C", "A4700G", "C4712T", "G4760T", "G4823A", "C4835T", "T4880C", "A4889G", "G4904A", "A4979G", "G4997A", "T5000C", "A5078G", "A5186G", "A5189G", "T5237C", "T5306G", "G5315A", "A5360G", "A5393G", "G5462A", "T5525C", "A5645G", "A5657G", "T5699C", "T5711C", "C5726T", "G5930C", "T5969A", "G6035A", "T6050C", "T6110C", "T6122G", "G6125A", "C6219T", "C6276T", "G6317A", "G6372A", "C6467T"], "RdRp": ["I141V", "N364S", "S876A", "S1440N", "Q1965H", "A2113T"]}, "labels": {"aa": "RdRp: I141V, N364S, S876A, S1440N, Q1965H, A2113T"}}, "children": [{"name": "NODE_0000045", "node_attrs": {"div": 0.164245, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C305T", "A365G", "A469G", "G635A", "G644A", "T857C", "A1482G", "G1514A", "T1727C", "A1841G", "T2024C", "T2036A", "T2633C", "G2666A", "A2888G", "T3125C", "T3170C", "G3194T", "C3275T", "G3632A", "A3704G", "T3935C", "G4100T", "G4139A", "G4625A", "C4640T", "C4722T", "A5048G", "C5177T", "A5258C", "T5369C", "G5417A", "T6423C"], "RdRp": ["K145R", "I483V"]}, "labels": {"aa": "RdRp: K145R, I483V"}}, "children": [{"name": "PP_006W07M|AREB14/P1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.164246, "strain": {"value": "PP_006W07M|AREB14/P1|nan/XXXX-XX-XX"}, "accession": "PP_006W07M", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN850093.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850093.1"}, "PPX_accession": {"value": "PP_006W07M.1", "url": "https://pathoplexus.org/seq/PP_006W07M.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 6464}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000046", "node_attrs": {"div": 0.164554, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G2225A", "C3611T"]}}, "children": [{"name": "PP_006W09H|AREB14/P3|nan/XXXX-XX-XX", "node_attrs": {"div": 0.164555, "strain": {"value": "PP_006W09H|AREB14/P3|nan/XXXX-XX-XX"}, "accession": "PP_006W09H", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN850095.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850095.1"}, "PPX_accession": {"value": "PP_006W09H.1", "url": "https://pathoplexus.org/seq/PP_006W09H.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 6528}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W08K|AREB14/P2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.164555, "strain": {"value": "PP_006W08K|AREB14/P2|nan/XXXX-XX-XX"}, "accession": "PP_006W08K", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN850094.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850094.1"}, "PPX_accession": {"value": "PP_006W08K.1", "url": "https://pathoplexus.org/seq/PP_006W08K.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 6562}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000047", "node_attrs": {"div": 0.159967, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T143C", "T1631C", "T1637C", "G2120A", "T2315C", "G5288A", "T5504C"]}}, "children": [{"name": "NODE_0000048", "node_attrs": {"div": 0.160319, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G1367A", "T2951C"]}}, "children": [{"name": "PP_006W0BD|ARLA17/NRC2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.166265, "strain": {"value": "PP_006W0BD|ARLA17/NRC2|nan/XXXX-XX-XX"}, "accession": "PP_006W0BD", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN850097.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850097.1"}, "PPX_accession": {"value": "PP_006W0BD.1", "url": "https://pathoplexus.org/seq/PP_006W0BD.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 6532}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["A197G", "C488T", "G512A", "C713T", "C776T", "A953T", "A1004G", "A1157G", "A1178G", "C1196T", "C1376T", "T1688C", "C1898T", "A2186G", "C2255T", "A2312C", "A2366G", "C2774T", "A2885G", "C2978T", "C3108T", "A3130G", "C3500A", "T3515A", "C3536T", "C3606T", "A3941G", "A3968G", "T4757C", "A4919G", "C4976T", "G5018A", "A5033G", "A5075C", "C5150T", "T5753C", "G6335A", "G6470A"], "RdRp": ["Q759H", "H1025Y", "E1032G"]}, "labels": {"aa": "RdRp: Q759H, H1025Y, E1032G"}}}, {"name": "PP_006VZ20|Epilink/96_2/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.162626, "strain": {"value": "PP_006VZ20|Epilink/96_2/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ20", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258156.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258156.1"}, "PPX_accession": {"value": "PP_006VZ20.1", "url": "https://pathoplexus.org/seq/PP_006VZ20.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6546}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["C481A", "T569C", "G734A", "G1106A", "A1259G", "T1523C", "G1925T", "T2564C", "C3035T", "A3794G", "A3806G", "G3848A", "T5231C", "G5333A", "C6051T"], "RdRp": ["P149Q"]}, "labels": {"aa": "RdRp: P149Q"}}}]}, {"name": "NODE_0000049", "node_attrs": {"div": 0.16245, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A950G", "T959C", "C1211T", "A1223G", "C1265T", "A1313T", "C1470T", "T1657C", "A2483G", "A4055G", "C4436T", "A4475G", "G4556A", "T5450C", "T5792C", "A5996G"], "RdRp": ["V541A"]}, "labels": {"aa": "RdRp: V541A"}}, "children": [{"name": "PP_006VZ7Q|NRC-6/18_05/21/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165893, "strain": {"value": "PP_006VZ7Q|NRC-6/18_05/21/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ7Q", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258161.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258161.1"}, "PPX_accession": {"value": "PP_006VZ7Q.1", "url": "https://pathoplexus.org/seq/PP_006VZ7Q.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6548}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["A167G", "G221A", "C344T", "C481A", "T569C", "G734A", "G1126A", "T2148C", "C2501T", "T2565C", "G2822A", "T2954C", "A3806G", "G3848A", "A4130G", "T4925A", "A4982G", "C4986T", "A5693G", "T6149C", "T6450C", "C6491T"], "RdRp": ["P149Q", "S364N"]}, "labels": {"aa": "RdRp: P149Q, S364N"}}}, {"name": "NODE_0000050", "node_attrs": {"div": 0.16538, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A86G", "G89A", "C147T", "C269T", "T680C", "A1001C", "A1139G", "A1178G", "A2120G", "C2123T", "C2543T", "A2846G", "T4172C", "T4592C", "G4670A", "T5555C", "C6191T", "G6398A", "G6455A"]}}, "children": [{"name": "PP_006VZLX|Epuyen/18-19_Patient_22_1/1/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165535, "strain": {"value": "PP_006VZLX|Epuyen/18-19_Patient_22_1/1/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZLX", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258174.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258174.1"}, "PPX_accession": {"value": "PP_006VZLX.1", "url": "https://pathoplexus.org/seq/PP_006VZLX.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6546}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["T1688C"]}}}, {"name": "NODE_0000051", "node_attrs": {"div": 0.165381, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ8N|Epuyen/18-19_Patient_10_12/10/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165382, "strain": {"value": "PP_006VZ8N|Epuyen/18-19_Patient_10_12/10/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ8N", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258162.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258162.1"}, "PPX_accession": {"value": "PP_006VZ8N.1", "url": "https://pathoplexus.org/seq/PP_006VZ8N.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6528}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000052", "node_attrs": {"div": 0.165382, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZCE|Epuyen/18-19_Patient_14_12/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165383, "strain": {"value": "PP_006VZCE|Epuyen/18-19_Patient_14_12/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZCE", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258166.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258166.1"}, "PPX_accession": {"value": "PP_006VZCE.1", "url": "https://pathoplexus.org/seq/PP_006VZCE.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6543}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000053", "node_attrs": {"div": 0.165383, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000054", "node_attrs": {"div": 0.165384, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZVD|Epuyen/18-19_Patient_4_11/27/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165539, "strain": {"value": "PP_006VZVD|Epuyen/18-19_Patient_4_11/27/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZVD", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258183.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258183.1"}, "PPX_accession": {"value": "PP_006VZVD.1", "url": "https://pathoplexus.org/seq/PP_006VZVD.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6542}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["T5066C"]}}}, {"name": "PP_006VZG6|Epuyen/18-19_Patient_18_12/31/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165385, "strain": {"value": "PP_006VZG6|Epuyen/18-19_Patient_18_12/31/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZG6", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258170.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258170.1"}, "PPX_accession": {"value": "PP_006VZG6.1", "url": "https://pathoplexus.org/seq/PP_006VZG6.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6531}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000055", "node_attrs": {"div": 0.165384, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165385, "strain": {"value": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ9L", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258163.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258163.1"}, "PPX_accession": {"value": "PP_006VZ9L.1", "url": "https://pathoplexus.org/seq/PP_006VZ9L.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6529}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000056", "node_attrs": {"div": 0.165385, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000057", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2C9|Epuyen|Argentina/2022-XX-XX", "node_attrs": {"div": 0.165541, "strain": {"value": "PP_006W2C9|Epuyen|Argentina/2022-XX-XX"}, "accession": "PP_006W2C9", "author": {"author": "Coelho, R.; Kehl, S.; Periolo, N.; Alonso, D.; Bellomo, C.; Martinez, V.", "value": "Coelho, R.; Kehl, S.; Periolo, N.; Alonso, D.; Bellomo, C.; Martinez, V."}, "date": {"value": "2022-XX-XX"}, "abbr_authors": {"value": "Coelho et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "PQ215670.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PQ215670.1"}, "PPX_accession": {"value": "PP_006W2C9.1", "url": "https://pathoplexus.org/seq/PP_006W2C9.1"}, "institution": {"value": "INEI ANLIS, Virology"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-25"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6477}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["A6381G"], "RdRp": ["K2116E"]}, "labels": {"aa": "RdRp: K2116E"}}}, {"name": "PP_006VZX9|Epuyen/18-19_Patient_6_11/25/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165541, "strain": {"value": "PP_006VZX9|Epuyen/18-19_Patient_6_11/25/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZX9", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258185.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258185.1"}, "PPX_accession": {"value": "PP_006VZX9.1", "url": "https://pathoplexus.org/seq/PP_006VZX9.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6546}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {"nuc": ["G3686A"]}}}]}, {"name": "NODE_0000058", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZDC|Epuyen/18-19_Patient_15_12/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZDC|Epuyen/18-19_Patient_15_12/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZDC", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258167.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258167.1"}, "PPX_accession": {"value": "PP_006VZDC.1", "url": "https://pathoplexus.org/seq/PP_006VZDC.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6531}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000059", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W001|Epuyen/18-19_Patient_9_12/12/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006W001|Epuyen/18-19_Patient_9_12/12/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006W001", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258188.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258188.1"}, "PPX_accession": {"value": "PP_006W001.1", "url": "https://pathoplexus.org/seq/PP_006W001.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6549}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000060", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZTH|Epuyen/18-19_Patient_29_1/14/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZTH|Epuyen/18-19_Patient_29_1/14/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZTH", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258181.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258181.1"}, "PPX_accession": {"value": "PP_006VZTH.1", "url": "https://pathoplexus.org/seq/PP_006VZTH.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6542}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000061", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZF8|Epuyen/18-19_Patient_17_12/31/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZF8|Epuyen/18-19_Patient_17_12/31/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZF8", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258169.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258169.1"}, "PPX_accession": {"value": "PP_006VZF8.1", "url": "https://pathoplexus.org/seq/PP_006VZF8.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6543}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000062", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZQP|Epuyen/18-19_Patient_26_1/4/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZQP|Epuyen/18-19_Patient_26_1/4/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZQP", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258178.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258178.1"}, "PPX_accession": {"value": "PP_006VZQP.1", "url": "https://pathoplexus.org/seq/PP_006VZQP.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6541}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000063", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZY7|Epuyen/18-19_Patient_7_12/7/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZY7|Epuyen/18-19_Patient_7_12/7/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZY7", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258186.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258186.1"}, "PPX_accession": {"value": "PP_006VZY7.1", "url": "https://pathoplexus.org/seq/PP_006VZY7.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6546}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000064", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZMV|Epuyen/18-19_Patient_23_1/7/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZMV|Epuyen/18-19_Patient_23_1/7/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZMV", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258175.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258175.1"}, "PPX_accession": {"value": "PP_006VZMV.1", "url": "https://pathoplexus.org/seq/PP_006VZMV.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6531}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000065", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZBG|Epuyen/18-19_Patient_13_12/24/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZBG|Epuyen/18-19_Patient_13_12/24/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZBG", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258165.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258165.1"}, "PPX_accession": {"value": "PP_006VZBG.1", "url": "https://pathoplexus.org/seq/PP_006VZBG.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6541}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000066", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZEA", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258168.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258168.1"}, "PPX_accession": {"value": "PP_006VZEA.1", "url": "https://pathoplexus.org/seq/PP_006VZEA.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6541}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000067", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZNT", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258176.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258176.1"}, "PPX_accession": {"value": "PP_006VZNT.1", "url": "https://pathoplexus.org/seq/PP_006VZNT.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6532}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000068", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZRM|Epuyen/18-19_Patient_27_1/8/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZRM|Epuyen/18-19_Patient_27_1/8/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZRM", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258179.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258179.1"}, "PPX_accession": {"value": "PP_006VZRM.1", "url": "https://pathoplexus.org/seq/PP_006VZRM.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6533}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000069", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZJ1|Epuyen/18-19_Patient_1_11/3/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZJ1|Epuyen/18-19_Patient_1_11/3/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZJ1", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258172.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258172.1"}, "PPX_accession": {"value": "PP_006VZJ1.1", "url": "https://pathoplexus.org/seq/PP_006VZJ1.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6541}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000070", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZUF|Epuyen/18-19_Patient_3_11/20/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZUF|Epuyen/18-19_Patient_3_11/20/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZUF", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258182.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258182.1"}, "PPX_accession": {"value": "PP_006VZUF.1", "url": "https://pathoplexus.org/seq/PP_006VZUF.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6539}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000071", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZPR|Epuyen/18-19_Patient_25_1/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZPR|Epuyen/18-19_Patient_25_1/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZPR", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258177.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258177.1"}, "PPX_accession": {"value": "PP_006VZPR.1", "url": "https://pathoplexus.org/seq/PP_006VZPR.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6542}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000072", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZH3|Epuyen/18-19_Patient_19_1/2/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZH3|Epuyen/18-19_Patient_19_1/2/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZH3", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258171.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258171.1"}, "PPX_accession": {"value": "PP_006VZH3.1", "url": "https://pathoplexus.org/seq/PP_006VZH3.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6547}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000073", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZZ5", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258187.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258187.1"}, "PPX_accession": {"value": "PP_006VZZ5.1", "url": "https://pathoplexus.org/seq/PP_006VZZ5.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6543}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000074", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZKZ|Epuyen/18-19_Patient_20_1/1/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZKZ|Epuyen/18-19_Patient_20_1/1/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZKZ", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258173.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258173.1"}, "PPX_accession": {"value": "PP_006VZKZ.1", "url": "https://pathoplexus.org/seq/PP_006VZKZ.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6539}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000075", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZWB", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258184.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258184.1"}, "PPX_accession": {"value": "PP_006VZWB.1", "url": "https://pathoplexus.org/seq/PP_006VZWB.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6542}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000076", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZSK", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258180.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258180.1"}, "PPX_accession": {"value": "PP_006VZSK.1", "url": "https://pathoplexus.org/seq/PP_006VZSK.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6532}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZAJ", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258164.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258164.1"}, "PPX_accession": {"value": "PP_006VZAJ.1", "url": "https://pathoplexus.org/seq/PP_006VZAJ.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6542}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, "root_sequence": {"RdRp": "MEKYREIHQRVRDLAPGTVSALECIDLLDRLYAVRHDLVDQMIKHDWSDNKDVERPIGQVLLMAGIPNDIIQGMEKKIIPNSPSGQVLKSFFRMTPDNYKITGNLIEFIEVTVTADVSRGIREKKIKYEGGLQFVEHLLETESRKGNIPQPYKITFSVVAVKTDGSNISTQWPSRRNDGVVQHMRLVQADINYVREHLIKLDERASLEAMFNLKFHVSGPKLRYFNIPDYRPQQLCEPRIDNLIQYCKNWLTKEHKFVFKEVSGANVIQAFESHEQLHLQKYNESRKPRNFLLLQLTVQGAYLPSTISSDQCNTRIGCLEISKNQPETPVQMLALDISYKYLSLTRDELINYYSPRVHFQSSPNVKEPGTLKLGLSQLNPLSKSILDNVGKHKKDKGLFGEIIDSINVASQIQINACAKIIEQILSNLEINIGEINASMPSPNKTTGVDDLLNKFYDNELGKYMLSILRKTAAWHIGHLVRDITESLIAHAGLRRSKYWSVHAYDHGNVILFILPSKSLEVVGSYIRYFTVFKDGIGLIDADNIDSKAEIDGVTWCYSKVMSIDLNRLLALNIAFEKSLLATATWFQYYTEDQGHFPLQHALRSIFSFHFLLCVSQKMKLCAIFDNLRYLIPSVTSLYSGYELLIEKFFERPFKSSLDVYLYSIIKSLLISLAQNNKVRFYSRVRLLGLTVDHSTVGASGVYPSLMSRVVYKHYRSLISEATTCFFLFEKGLHGNLPEEAKIHLETIEWARKFQEKEKQYGDILLKEGYTIESVINGEVDVEQQLFCQEVSELSAQELNKYLQAKSQVLCANIMNKHWDKPYFSQTRNISLKGMSGALQEDGHLAASVTLIEAIRFLNRSQTNPNVIDMYEQTKQSKAQARIVRKYQRTEADRGFFITTLPTRVRLEIIEDYFDAIAKVVPEEYISYGGDKKVLNIQNALEKALRWASGVSEITTSTGKSIKFKRKLMYVSADATKWSPGDNSAKFRRFTQAIYDGLSDNKLKCCVVDALRNIYETEFFMSRKLHRYIDSMENHSDAVEDFLAFFSNGVSANVKGNWLQGNLNKCSSLFGAAVSLLFREVWKQLFPELECFFEFAHHSDDALFIYGYLEPEDDGTDWFLYVSQQIQAGNFHWHAINQEMWKSMFNLHEHLLLMGSIKVSPKKTTVSPTNAEFLSTFFEGCAVSIPFVKILLGSLSDLPGLGFFDDLAAAQSRCVKSLDLGACPQLAQLAIVLCTSKVERLYGTADGMVNSPTAFLKVNKAHVPVPLGGDGSMSIMELATAGFGMADKNILKNAFISYKHTRRDGDRYVLGLFKFLMSLSEDVFQHDRLGEFSFVGKVQWKVFTPKAEFEFHDQFSHNYLLEWTRQHPVYDYIIPRNRDNLLVYLVRKLNDPSIITAMTMQSPLQLRFRMQAKQHMKVCRYEGEWVTFREVLAAADSFATSYQPTERDMDLFNTLVSCTFSKEYAWKDFLNEVRCEVLTTRHVHRPKIARTFTVREKDQAIQNPINSVIGYKYALTVDEVSDVLDSAFFPESLSADLQVMKDGVYRELGLDISSPEVLKRIAPLLYKAGRSRVVIVEGNVEGTAESICSYWLKTMSLIKTIRVRPKKEVLKAMSLYSVKENIGLQDDIAATRLCIEIWRWCKANEQDVKEWLTSLYFEKQTLMDWVERFRRKGVVPIDPEIQCIGLLLYDVLGYKSVLQMQANRRAYSGKQYDAYCVQTYNEETKLYEGDLRVTFNFGLDCARLEVFWDKKEYILETSITQRHVLRLLMEEVSQELIRCGMRFKTEQVNQTRSLVLFKTEAGFEWGKPNVPCIVYKHCVLRTGLRTKQPINKEFMINVQSDGFRAIAQMDIESPRFLLAHAYHTLRDIRYQAVQAVGNVWFKTEQHKLFINPIISSGLLENFMKGLPAAIPPAAYSLIMNKAKISVDLFMFNELLALINRNNILNLDGIEETSEGYSTVTSMSSKQWSEEMSLMSDDDIDDMEDFTIALDDIDFEQINLEEDIQHFLQDESAYVGDLLIQTEDIEVKKIRGVTRVLEPVKLLKSWVSKGLAIDKVYNPIGIILMARYMSKTYNFSSTPLALLNPYDLTELESVVKGWGETVNDRFKDLDIEAQTVVKEKGVQPEDVLPDSLFSFRHVDVLLRRLFPRDPVSTFY*", "nuc": "TAGTAGTAGACTCCGGGATAGAAAAAGTTAGAAAAATGGAAAAGTATAGAGAGATTCATCAGAGAGTTAGGGACCTTGCACCTGGAACGGTATCAGCATTAGAATGCATAGATCTACTGGATAGGCTCTACGCTGTCAGACATGACCTGGTTGACCAGATGATAAAACATGACTGGTCTGATAATAAAGATGTAGAAAGACCTATAGGTCAAGTTTTACTGATGGCTGGCATACCTAATGATATTATACAAGGCATGGAGAAGAAGATTATACCAAATAGCCCTTCTGGACAAGTATTGAAAAGCTTTTTCCGAATGACACCAGATAATTATAAAATTACAGGTAACTTGATTGAGTTTATTGAAGTGACTGTAACAGCTGATGTGTCACGAGGTATTAGGGAGAAGAAAATAAAGTATGAAGGAGGCCTCCAATTTGTTGAGCACTTACTGGAAACTGAATCAAGGAAGGGTAATATACCGCAACCTTATAAAATAACATTCTCAGTGGTTGCAGTTAAAACAGATGGATCAAACATCTCGACTCAGTGGCCCAGTCGGAGGAACGATGGGGTAGTTCAGCACATGCGTCTAGTCCAAGCTGATATAAATTATGTCAGAGAGCATTTAATAAAGTTAGATGAGAGAGCATCTTTGGAGGCAATGTTTAACTTAAAGTTCCATGTATCAGGCCCTAAACTGAGATACTTTAACATCCCTGATTATAGACCACAGCAGCTATGTGAACCACGGATTGACAACTTAATACAATATTGCAAGAATTGGTTGACAAAAGAACATAAGTTTGTATTCAAAGAAGTCAGTGGAGCTAATGTGATTCAAGCATTTGAGAGTCATGAACAGTTACATTTACAGAAATACAACGAATCACGAAAACCAAGAAATTTTTTACTCTTGCAGCTTACAGTGCAAGGGGCATATCTACCATCAACAATCAGTTCTGACCAGTGCAATACTAGGATTGGGTGTCTAGAAATATCAAAAAACCAACCAGAAACACCAGTACAGATGCTTGCATTGGATATATCTTATAAGTATCTGAGTCTTACAAGGGATGAGTTGATCAATTATTATAGCCCTAGAGTGCACTTTCAATCGAGCCCTAATGTGAAGGAACCAGGGACACTGAAGTTAGGATTATCACAATTAAATCCACTCTCTAAATCAATTCTTGACAATGTTGGAAAGCATAAAAAGGATAAAGGATTATTTGGTGAGATCATAGATAGCATAAATGTGGCAAGTCAAATACAGATCAATGCATGTGCAAAAATAATTGAGCAGATCTTATCAAATCTTGAAATAAACATTGGAGAAATAAATGCTAGTATGCCTTCTCCTAATAAGACAACAGGTGTAGATGACCTGTTAAATAAATTTTATGATAATGAGCTTGGTAAATATATGTTATCCATTCTGAGGAAAACAGCAGCATGGCATATAGGCCATCTAGTCAGAGATATCACAGAAAGTTTAATTGCACATGCTGGGCTGCGCCGTTCTAAATATTGGTCAGTACATGCATATGACCATGGGAATGTAATTTTGTTTATCTTGCCATCAAAGTCACTAGAGGTAGTAGGTTCTTATATAAGGTATTTCACAGTATTTAAAGATGGTATAGGGTTGATAGACGCAGATAATATTGATTCTAAGGCCGAAATTGATGGTGTCACCTGGTGTTATTCTAAGGTCATGAGTATTGATTTAAACAGGTTATTGGCTTTGAACATAGCTTTTGAGAAGTCACTTCTTGCCACGGCTACATGGTTCCAATATTATACTGAAGACCAAGGCCATTTTCCCCTTCAACATGCATTAAGGTCAATCTTTTCTTTCCACTTTTTACTCTGTGTGTCACAAAAGATGAAGCTATGTGCAATATTTGATAACCTTCGTTATCTGATACCATCAGTAACATCTTTGTACTCTGGGTACGAGTTGTTAATAGAAAAATTCTTTGAGAGACCATTTAAGAGTTCACTGGATGTATACCTTTATTCTATCATAAAATCTCTATTAATTAGTTTGGCACAAAATAATAAAGTTCGATTTTACTCAAGAGTTCGTTTGTTAGGATTGACAGTTGATCACTCCACGGTCGGAGCAAGTGGTGTTTACCCCTCTTTAATGTCCCGTGTTGTTTACAAACATTACAGAAGTTTAATCTCTGAAGCTACAACTTGTTTTTTCTTATTTGAAAAGGGTTTGCATGGGAATTTACCAGAAGAGGCTAAAATACATCTTGAAACCATTGAATGGGCTCGGAAGTTCCAGGAGAAAGAAAAACAATATGGTGATATTCTTCTAAAGGAAGGCTATACAATTGAATCTGTAATCAATGGAGAAGTTGATGTAGAACAACAGCTTTTTTGTCAGGAGGTCTCAGAGCTAAGTGCACAAGAGCTCAACAAATATTTACAGGCAAAATCTCAAGTTTTATGTGCTAATATCATGAATAAACACTGGGACAAACCATATTTCAGTCAAACACGCAATATCAGTCTCAAGGGAATGTCTGGGGCATTGCAAGAGGATGGACATTTAGCTGCTAGTGTGACACTGATTGAAGCAATTAGGTTTTTAAATAGATCACAAACCAATCCAAATGTTATTGATATGTATGAGCAGACTAAACAATCAAAGGCACAAGCTAGGATTGTTAGGAAATACCAGAGAACAGAAGCAGATAGAGGATTTTTTATCACAACATTACCAACTAGGGTGCGATTAGAAATAATAGAAGATTATTTCGATGCAATTGCAAAGGTTGTGCCTGAAGAATATATTTCTTATGGTGGGGATAAAAAAGTTCTAAATATTCAGAATGCACTAGAGAAAGCACTTAGATGGGCATCTGGAGTATCAGAAATTACAACAAGCACTGGTAAAAGCATCAAGTTTAAGCGGAAATTAATGTATGTTAGTGCTGATGCCACAAAATGGTCACCAGGAGATAATTCTGCTAAGTTTAGGAGATTTACACAAGCAATATATGATGGCTTATCAGACAACAAACTGAAATGTTGTGTTGTTGATGCATTACGTAACATTTATGAGACTGAATTTTTTATGTCCAGGAAATTACACCGATATATTGATAGTATGGAAAATCATTCAGATGCGGTTGAAGATTTCTTGGCATTTTTCTCAAATGGAGTCTCAGCCAATGTAAAGGGAAACTGGCTTCAAGGGAACTTAAATAAATGCTCATCATTATTTGGTGCTGCTGTCTCATTACTTTTTCGGGAGGTCTGGAAACAATTGTTTCCAGAATTAGAGTGTTTTTTTGAATTTGCACATCATTCAGATGATGCATTGTTCATTTATGGCTATCTGGAGCCTGAAGATGATGGAACAGATTGGTTTTTGTATGTATCACAGCAGATACAGGCAGGAAACTTTCATTGGCATGCTATAAATCAAGAGATGTGGAAGAGCATGTTTAATCTACATGAGCACTTACTATTAATGGGTTCTATTAAAGTGTCACCTAAGAAGACAACAGTATCACCTACTAATGCAGAATTTCTTTCTACTTTTTTTGAAGGTTGTGCTGTGTCAATCCCTTTTGTTAAAATCTTACTGGGTTCATTATCAGATCTTCCTGGGTTAGGTTTCTTTGATGATTTAGCAGCAGCACAAAGCAGATGTGTAAAGTCACTAGATTTGGGTGCTTGCCCACAATTAGCTCAACTAGCTATAGTATTATGCACAAGCAAAGTTGAGAGGTTGTATGGTACTGCTGATGGAATGGTAAACTCTCCAACAGCATTCCTTAAGGTGAATAAAGCACACGTACCAGTACCACTTGGTGGTGATGGCTCAATGTCTATTATGGAGCTTGCAACAGCTGGTTTTGGGATGGCAGATAAGAATATTTTAAAAAATGCATTCATATCTTATAAGCATACTCGTAGAGATGGTGATAGGTACGTATTGGGTTTATTTAAATTTTTGATGTCATTAAGTGAGGATGTATTCCAGCACGACCGATTGGGTGAGTTTAGTTTTGTAGGTAAAGTTCAATGGAAAGTGTTCACTCCTAAAGCTGAATTTGAATTTCATGATCAATTTTCACATAATTATTTATTAGAGTGGACACGTCAACATCCTGTGTATGACTATATTATTCCTAGAAATAGAGATAATTTGCTTGTATACCTTGTAAGAAAGTTGAATGATCCTAGCATCATTACAGCTATGACTATGCAGTCACCATTACAACTTCGTTTCCGTATGCAAGCAAAGCAACATATGAAAGTATGCCGGTATGAAGGTGAATGGGTCACATTCAGGGAGGTACTTGCTGCAGCTGATAGTTTTGCTACGAGTTACCAACCTACTGAAAGGGACATGGATCTCTTTAATACACTTGTAAGTTGTACATTTTCTAAAGAGTATGCTTGGAAAGACTTTTTAAATGAAGTAAGGTGTGAGGTCTTAACAACAAGACATGTACATAGGCCTAAAATTGCTAGGACATTCACTGTTAGAGAAAAGGACCAGGCTATACAAAATCCAATAAATTCGGTGATTGGCTATAAGTATGCTCTTACAGTGGATGAAGTCAGTGATGTTCTTGATAGTGCATTCTTCCCAGAGTCTCTATCTGCAGACTTACAGGTTATGAAAGATGGAGTTTACAGAGAATTAGGACTTGATATAAGTTCTCCTGAAGTCCTAAAACGCATAGCACCACTATTATATAAGGCAGGAAGGTCACGTGTTGTTATTGTGGAAGGAAATGTAGAAGGGACAGCTGAGTCAATCTGTAGTTATTGGCTCAAGACAATGTCACTGATTAAAACAATCAGAGTAAGACCTAAGAAGGAGGTACTGAAAGCTATGTCTTTATATAGTGTTAAAGAAAATATTGGATTGCAGGATGATATTGCAGCAACTCGACTATGCATAGAAATCTGGAGATGGTGTAAGGCAAATGAACAGGATGTTAAAGAATGGCTAACATCTCTGTACTTTGAAAAACAGACATTGATGGATTGGGTAGAAAGGTTTAGAAGGAAAGGAGTTGTTCCTATTGATCCTGAAATACAATGTATTGGCCTACTCTTATATGATGTATTAGGTTATAAAAGTGTGTTACAAATGCAAGCAAACCGAAGAGCCTATTCAGGTAAGCAATATGATGCATACTGTGTGCAAACATATAACGAGGAAACAAAACTATATGAAGGTGACCTTCGTGTTACTTTTAATTTTGGTTTAGATTGTGCAAGGTTAGAAGTTTTTTGGGATAAAAAAGAGTATATCTTAGAGACATCTATCACCCAACGACATGTGTTGCGGTTACTGATGGAAGAAGTGTCACAAGAATTAATTAGATGTGGAATGAGATTCAAAACAGAGCAAGTCAATCAAACTCGGAGCTTAGTGTTATTCAAAACAGAGGCTGGTTTTGAATGGGGTAAGCCTAATGTGCCATGTATTGTATATAAACACTGTGTCTTGAGAACTGGGCTTCGTACGAAACAGCCAATTAATAAAGAGTTCATGATAAATGTACAAAGTGATGGTTTCCGTGCAATAGCACAGATGGATATTGAGAGTCCACGGTTCTTGTTAGCACATGCATATCATACACTGCGTGATATTAGATATCAAGCAGTGCAGGCAGTAGGGAATGTATGGTTTAAAACAGAACAGCACAAACTATTTATTAACCCAATTATATCATCAGGGCTTTTAGAAAACTTTATGAAAGGCTTACCTGCTGCCATACCTCCTGCTGCATATTCCCTCATAATGAACAAGGCTAAGATTTCTGTGGATTTGTTTATGTTCAATGAGCTATTAGCACTTATAAATAGGAATAATATCCTCAACCTTGATGGGATTGAAGAAACATCTGAAGGTTATAGTACTGTGACATCAATGTCTAGCAAGCAGTGGTCTGAAGAGATGAGTTTAATGTCTGATGATGATATTGATGATATGGAGGACTTTACTATAGCACTGGATGATATTGACTTTGAACAAATAAATTTGGAAGAGGATATACAACACTTTCTGCAGGATGAATCAGCATATGTTGGTGATTTATTGATTCAGACAGAAGACATTGAGGTTAAAAAGATACGTGGGGTGACAAGAGTATTAGAGCCAGTCAAGCTATTAAAAAGCTGGGTTTCTAAAGGCCTTGCTATAGACAAAGTATACAATCCTATCGGGATAATCTTAATGGCAAGATACATGTCAAAAACATACAATTTCAGTTCAACACCTCTTGCACTATTAAATCCATATGACTTGACAGAACTTGAAAGTGTTGTAAAGGGATGGGGAGAAACTGTAAATGATCGATTCAAAGATTTAGATATTGAGGCACAAACAGTTGTTAAAGAAAAGGGTGTACAGCCAGAAGATGTACTCCCTGATTCATTATTCTCTTTCAGGCATGTTGATGTTTTGCTGCGAAGGTTGTTCCCGCGTGACCCTGTATCAACATTCTATTAGTGGATTTTATACCTTATTCATACAGTATGTATATTGTAGTGTTCTTTTCCCGGAGCATACTACTA"}} \ No newline at end of file diff --git a/data_output/nextstrain/orthohantavirus/andv/m/unreleased/CHANGELOG.md b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/CHANGELOG.md new file mode 100644 index 000000000..64bfe4ca6 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/CHANGELOG.md @@ -0,0 +1,15 @@ +## Unreleased + +- update outbreak name to 2026-Hondius +- make nucleotide default sequence view. +- add GPC amino acid substitutions + +## 2026-05-11T18:59:50Z + +- Updating Nextclade dataset with the latest sequences and metadata from Pathoplexus +- Include 2026 outbreak sequences +- add 2026 outbreak annotation + +## 2026-05-08T21:17:05Z + + - initial release diff --git a/data_output/nextstrain/orthohantavirus/andv/m/unreleased/README.md b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/README.md new file mode 100644 index 000000000..2b6dd8998 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/README.md @@ -0,0 +1,17 @@ +# Andesvirus segment M dataset + +| Key | Value | +| :-- | :-- | +| name | Andes virus segment M Tree | +| authors | [Nextstrain](https://nextstrain.org) | +| reference | [NC_003467](www.ncbi.nlm.nih.gov/nuccore/NC_003467) | +| workflow | https://github.com/nextstrain/andv/tree/main/nextclade | +| path | `nextstrain/orthohantavirus/andv/m` | + +This dataset aligns sequences to the RefSeq entry [NC_003467.1](www.ncbi.nlm.nih.gov/nuccore/NC_003467.1) and places the sequences onto a tree build using sequences from INSDC and Pathoplexus. +Sequences from the 2026 outbreak were rapidly shared by several laboratories around the world to facilitate outbreak investigations. These data have been released under RESTRICTED USE terms on Pathoplexus. +We refer to the [summary of the initial investigations by this collaboration on virological.org](https://virological.org/t/preliminary-analysis-of-orthohantavirus-andesense-virus-sequences-from-a-cruise-ship-related-cluster-may-2026/1029) for further details. + +## What are Nextclade datasets + +Read more about Nextclade datasets in the Nextclade documentation: https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html diff --git a/data_output/nextstrain/orthohantavirus/andv/m/unreleased/dataset.zip b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/dataset.zip new file mode 100644 index 000000000..a73245b57 Binary files /dev/null and b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/dataset.zip differ diff --git a/data_output/nextstrain/orthohantavirus/andv/m/unreleased/genome_annotation.gff3 b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/genome_annotation.gff3 new file mode 100644 index 000000000..68df2a679 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/genome_annotation.gff3 @@ -0,0 +1,9 @@ +##gff-version 3 +#!gff-spec-version 1.21 +#!processor NCBI annotwriter +##sequence-region NC_003467.2 1 3671 +##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1980456 +NC_003467.2 RefSeq region 1 3671 . + . ID=NC_003467.2:1..3671;Dbxref=taxon:1980456;Name=M;gbkey=Src;genome=genomic;mol_type=genomic RNA;old-name=Andes virus;segment=M;strain=Chile-9717869 +NC_003467.2 RefSeq CDS 52 3468 . + 0 Name=GPC; +NC_003467.2 RefSeq CDS 52 2004 . + 0 Name=Gn; +NC_003467.2 RefSeq CDS 2005 3468 . + 0 Name=Gc; diff --git a/data_output/nextstrain/orthohantavirus/andv/m/unreleased/pathogen.json b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/pathogen.json new file mode 100644 index 000000000..4f45f465b --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/pathogen.json @@ -0,0 +1,65 @@ +{ + "$schema": "https://raw.githubusercontent.com/nextstrain/nextclade/refs/heads/release/packages/nextclade-schemas/input-pathogen-json.schema.json", + "files": { + "reference": "reference.fasta", + "pathogenJson": "pathogen.json", + "genomeAnnotation": "genome_annotation.gff3", + "treeJson": "tree.json", + "examples": "sequences.fasta", + "readme": "README.md", + "changelog": "CHANGELOG.md" + }, + "schemaVersion": "3.0.0", + "attributes": { + "name": "Andesvirus (segment M)", + "reference name": "Chile-9717869", + "reference accession": "NC_003467", + "experimental": true + }, + "alignmentParams": { + "penaltyGapExtend": 1, + "penaltyGapOpen": 8, + "penaltyGapOpenInFrame": 15, + "penaltyGapOpenOutOfFrame": 18, + "penaltyMismatch": 1, + "scoreMatch": 5, + "retryReverseComplement": true, + "allowedMismatches": 10, + "minSeedCover": 0.12, + "minLength": 100 + }, + "qc": { + "missingData": { + "enabled": true, + "missingDataThreshold": 200, + "scoreBias": 100 + }, + "mixedSites": { + "enabled": true, + "mixedSitesThreshold": 4 + }, + "frameShifts": { + "enabled": true + }, + "stopCodons": { + "enabled": true + }, + "privateMutations": { + "enabled": true, + "cutoff": 120, + "typical": 70, + "weightLabeledSubstitutions": 1, + "weightReversionSubstitutions": 1, + "weightUnlabeledSubstitutions": 1 + }, + "snpClusters": { + "enabled": true, + "clusterCutOff": 15, + "scoreWeight": 50, + "windowSize": 50 + } + }, + "version": { + "tag": "unreleased" + } +} diff --git a/data_output/nextstrain/orthohantavirus/andv/m/unreleased/reference.fasta b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/reference.fasta new file mode 100644 index 000000000..57fb40bff --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/reference.fasta @@ -0,0 +1,63 @@ +>NC_003467.2 Andes virus segment M, complete genome +TAGTAGTAGACTCCGCAAGAAGAAGCAAAAAATTAAAGAAGTGAGTTTAAAATGGAAGGG +TGGTATCTGGTTGTTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCCAAGACCATT +TATGAGCTTAAAATGGAATGCCCGCACACTGTGGGTCTCGGTCAAGGTTACATCATTGGC +TCAACAGAACTAGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTCGAGAGCTCT +TGCAATTTTGATCTTCATACAACATCTATGGCCCAGAAGAGTTTCACCCAAGTTGAATGG +AGAAAGAAAAGTGACACAACTGATACCACAAATGCTGCGTCCACTACCTTTGAAGCACAA +ACTAAAACTGTTAACCTTAGAGGGACTTGTATACTGGCACCTGAACTCTATGATACATTG +AAGAAAGTAAAAAAGACAGTCCTGTGCTATGATCTAACATGTAATCAAACACATTGTCAG +CCAACTGTCTATCTGATTGCACCTGTATTGACATGCATGTCAATAAGAAGTTGTATGGCT +AGTGTGTTTACAAGCAGGATTCAGGTGATTTATGAAAAGACACATTGTGTAACAGGTCAG +CTGATTGAGGGTCAGTGTTTCAACCCAGCACACACATTGACATTATCTCAGCCTGCTCAC +ACTTATGATACTGTCACCCTTCCTATCTCTTGTTTTTTCACACCAAAGAAGTCGGAGCAA +CTAAAAGTTATAAAAACATTTGAAGGAATTCTGACGAAGACAGGTTGCACGGAGAATGCA +TTGCAGGGTTATTATGTGTGTTTTTTAGGGAGTCATTCAGAACCTTTAATTGTTCCGAGT +TTGGAGGACATACGGTCTGCTGAAGTTGTTAGTAGGATGCTTGTACACCCTAGGGGAGAA +GACCATGATGCCATACAGAATTCACAAAGTCACTTAAGAATAGTGGGACCTATCACAGCA +AAAGTGCCATCAACTAGTTCCACAGATACCCTAAAGGGGACAGCCTTTGCAGGCGTCCCA +ATGTATAGCTCTTTATCTACACTAGTCAGAAATGCAGACCCAGAATTTGTATTTTCTCCA +GGTATAGTACCTGAATCTAATCACAGTACATGTGATAAGAAGACAGTACCTATCACATGG +ACAGGCTACCTACCAATATCAGGTGAGATGGAAAAAGTGACTGGATGTACAGTTTTTTGT +ACACTAGCAGGACCTGGTGCTAGTTGTGAGGCCTATTCTGAAAATGGTATATTTAACATC +AGTTCTCCAACATGTCTTGTAAACAAAGTCCAAAGATTTCGTGGATCTGAACAGAAAATA +AATTTTATCTGTCAGCGGGTAGATCAGGATGTTGTTGTATACTGCAATGGGCAAAAGAAA +GTCATATTAACCAAAACTTTGGTTATTGGGCAGTGTATTTATACATTCACAAGCCTATTT +TCATTGATGCCTGATGTAGCCCACTCATTGGCTGTAGAATTATGTGTCCCGGGATTACAT +GGATGGGCCACTGTCATGCTTCTATCAACATTCTGCTTTGGGTGGGTCTTGATTCCTGCG +GTCACATTAATAATATTAAAGTGTCTAAGGGTTTTGACGTTTTCTTGTTCCCATTACACT +AATGAGTCAAAATTTAAATTCATCCTGGAAAAAGTTAAAATTGAATACCAAAAGACTATG +GGATCAATGGTGTGCGATGTATGTCATCATGAGTGTGAAACAGCAAAAGAACTTGAATCA +CATAGACAGAGTTGTATCAATGGACAATGTCCTTATTGCATGACAATAACTGAAGCAACT +GAAAGTGCCTTGCAAGCCCATTATTCCATTTGTAAATTGACAGGAAGATTTCAGGAGGCA +CTGAAAAAGTCACTTAAAAAGCCAGAGGTAAAAAAAGGTTGTTACAGAACACTCGGGGTA +TTTAGATATAAAAGTAGATGTTATGTGGGTTTGGTATGGTGCCTATTGTTGACATGTGAA +ATTGTTATTTGGGCCGCAAGTGCAGAGACTCCACTAATGGAGTCAGGCTGGTCAGATACG +GCTCATGGTGTTGGTGAGATTCCAATGAAGACAGACCTCGAGCTGGACTTTTCACTGCCT +TCTTCATCCTCTTACAGTTATAGGAGAAAGCTCACAAACCCAGCCAATAAAGAAGAGTCT +ATTCCCTTCCACTTCCAGATGGAAAAACAAGTAATTCATGCTGAAATCCAACCCCTGGGT +CATTGGATGGATGCGACATTTAATATTAAGACTGCATTTCATTGTTATGGTGCATGCCAG +AAATACTCTTATCCATGGCAGACATCTAAGTGCTTCTTTGAAAAGGACTACCAGTATGAA +ACAGGCTGGGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGATGCACTGCTTGT +GGTGTTTATCTCGATAAACTAAAATCTGTTGGGAAGGCCTATAAGATAATTTCTTTAAAA +TATACCAGAAAGGTTTGTATTCAGTTAGGAACAGAACAAACTTGCAAGCATATTGATGCA +AATGATTGTTTAGTGACACCATCTGTGAAAGTTTGCATAGTGGGCACAGTTTCAAAACTT +CAACCATCTGATACTCTTTTGTTCTTAGGTCCACTAGAACAAGGGGGAATCATTCTTAAG +CAATGGTGCACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCCACTCCCAGT +GGTATGAGGTGTCCAGAGCACACTGGATCATTTAGGAAAATTTGCGGTTTTGCTACTACA +CCAGTTTGTGAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATGGCAACAAAA +GATTCATTCCAATCATTTAACTTAACAGAACCTCACATCACAACAAACAAGCTTGAATGG +ATCGACCCAGATGGGAATACAAGAGACCACGTAAACCTTGTCTTAAATAGAGATGTCTCA +TTTCAGGATTTAAGTGATAACCCCTGTAAAGTAGACCTACACACACAAGCAATAGAAGGG +GCATGGGGTTCTGGTGTAGGGTTTACACTCACATGTACTGTCGGATTAACAGAGTGCCCA +AGTTTTATGACATCAATTAAGGCATGTGACCTAGCTATGTGTTATGGATCAACAGTAACA +AACCTTGCCAGGGGCTCTAATACAGTGAAAGTAGTTGGTAAAGGAGGCCATTCAGGGTCC +TCATTTAAATGCTGTCATGATACAGATTGCTCCTCTGAAGGTTTACTTGCATCAGCCCCT +CATCTTGAGAGGGTAACAGGATTCAATCAAATTGATTCAGATAAGGTTTATGATGATGGT +GCACCACCTTGCACATTCAAATGCTGGTTCACTAAGTCAGGTGAGTGGCTTCTTGGGATC +TTAAACGGGAATTGGATTGTTGTTGTAGTGCTTGTTGTGATACTCATTCTCTCTATCATA +ATGTTCAGTGTTTTGTGTCCCAGGAGAGGGCACAAGAAAACTGTCTAAGCATTGACCTCA +ACTCCTACATTAGATCATATACATTTATGCACTTCCTCATATTTAGCTGCACTAAGATAT +TAATAAACTCTAGTTATTGACTTTATAAGATTATTATGGAACTAACCTCACTTAAAAAAA +ACAAATACTTTACTCATATATAACTCCATATTCTCTTACCGAGGCTTTTGTTCCTGCGGA +GCATACTACTA diff --git a/data_output/nextstrain/orthohantavirus/andv/m/unreleased/sequences.fasta b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/sequences.fasta new file mode 100644 index 000000000..d9c5231e4 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/sequences.fasta @@ -0,0 +1,451 @@ +>EU241663 +TTAGTAACACCATCTGTGAAAGTTTGTATAGTAGGCACAGTTTCTAAACTCCAACCATCT +GATACTCTTTTGTTCTTAGGTCCACTAGAACAAGGGGGAATCATTCTTAAACAATGGTGC +ACAACATCATGTGCATTTGGAGATCCTGGTGATATCATGTCCACTCCTAGTGGTATGAGG +TGTCCAGAACACACTGGATCATTTAGGAAAATTTGTGGGTTTGCCACTACACCAGTTTGT +GAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATGGCAACAAAAGACTCATTC +CAATCATTTAACTTAACAGAACCTCACATCACAACAAACAAGCTTGAGTGGATTGACCCA +GATGGGAATACAAGAGACCACGTAAATCTTGTCTTAAATAGAGATGTTTCATTCCAGGAT +TTAAGTGATAACCCCTGTAAAGTAGACTTACACACACAAGCAATAGAAGGAGCATGGGGT +TCTGGTGTAGGGTTTACACTTACATGTACTGTCGGATTAACAGAGTGCCCGAGTTTTATG +ACATCAATTAAAGCATGTGACCTAGCCATGTGCTATGGCTCAACAGTAGCAAACCT +>EU543217 +GTATGGGTCCAGCTAGGTACAGAACAAACTTGCAAGCATATTGATGCAAATGACTGCTTA +GTGACACCATCAGTCAAAATATGCATTGTTGGGACTGTCTCTAAACTTCAGCCATCCGAT +ACTCTTTTATTTTTAGGCCCTTTGGAACAAGGGGGAATAATCCTGAAACAGTGGTGTACA +ACAACATGTGCTTTTGGTGATCCAGGTGATATTATGTCTACAACAAGTGGTATGAGGTGT +CCTGAACATACGGGTTCTTTCAGGAAGATTTGTGGCTTTGCCACTACCCCGATTTGTGAA +TATCAAGGAAATACTATTTCTGGTTATAAAAGGATGATGGCAACTAAAGATTCATTTCAA +TCATTTAATCTGACAGATCCCCACATCACAACAAATAAACTTGAATGGATTGACCCAGAT +GGCAACACACGAGATCATGTCAATCTTATTCTAAACAGGGATGTATCATTTCAGGATCTT +AGTGATAATCCATGCAGAGTTGACTTGCACACCCAATCAATCGATGGAGCTTGGGGTTCA +GGAGTCGGTTTCACACTCACATGCACTGTTGGGCTAACAGAGTGTCCAAGTTTTATGACA +TCAATTAAAGCATGTGATCTTGCAATGTGTTACGGCTCTACTGTGGCAAACTTGGCAAGG +GGTTCAAATACAGTAAAAGTAGTAGGTAAAGGAGGACATTCTGGGTCATCATTCAAATGC +TGTCATGATAGTGAATGCTCTTCGGAAGGTCTAGTTGCATCAGCACCACATTTAGAGAGG +GTGACTGGATTCAATCAAATTGATTCTGATAAAGTTTACGATGATGGTGCTCCTCCTTGC +ACAGTAAAGTGCTGGTTTACAAAGTCAGGTGAATGGCTCCTTGGTATTTTAAATGGTAAT +TGGGTTGTGGTTGTTGTTCTTTTTGTGATACTTATCTTCTCTATCATTTTATTCAGTATC +TTATGCCCTAGAAGAGGGCATAAGAAGAGTGCTTGATTGTTTGTCATTTATATTATAATA +CAGTTTATTACCATTAGGCCGACGTATACTCACTGTTATATAAACATACTAATATTCAAT +CACTTACTTAGTATAATCAATATTAACACATTAATCTGACATAAAAAAAACAAATACTTT +ACTAACATAAAACTACATTTTCTCTTACCGAGGATTTTGTTCCTGCGGAGCAATACTACT +A +>MK513891 +ATGGAAGGGTGGTATCTGGTTGTTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCC +AAGACCATTTATGAGCTTAAAATGGAATGCCCGCACACTGTGGGTCTCGGTCAAGGTTAC +ATCATTGGCTCAACAGAACTAGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTC +GAGAGCTCTTGCAATTTTGATCTTCATACAACATCTATGGCCCAGAAGAGTTTCACCCAA +GTTGAATGGAGAAAGAAAAGTGACACAACTGATACCACAAATGCTGCGTCCACTACCTTT +GAAGCACAAACTAAAACTGTTAACCTTAGAGGGACTTGTATACTGGCACCTGAACTCTAT +GGTACATTGAAGAAAGTAAAAAAGACAGTCCTGTGCTATGATCTAACATGTAATCAAACA +CATTGTCAGCCAACTGTCTATCTGATTGCACCTGTATTGACATGCATGTCAATAAGAAGT +TGTATGGCTAGTGTGTTTACAAGCAGGATTCAGGTGATTTATGAAAAGACACATTGTGTA +ACAGGTCAGCTGATTGAGGGTCAGTGTTTCAACCCAGCACACACATTGACATTATCTCAG +CCTGCTCACACTTATGATACTGTCACCCTTCCTATCTCTTGTTTTTTCACACCAAAGAAG +TCGGAGCAACTAAAAGTTATAAAAACATTTGAAGGAATTCTGACGAAGACAGGTTGCACG +GAGAATGCATTGCAGGGTTATTATGTGTGTTTTTTAGGGAGTCATTCAGAACCTTTAATT +GTTCCGAGTTTGGAGGACATACGGTCTGCTGAAGTTGTTAGTAGGATGCTTGTACACCCT +AGGGGAGAAGACCATGATGCCATACAGAATTCACAAAGTCACTTAAGAATAGTGGGACCT +ATCACAGCAAAAGTGCCATCAACTAGTTCCACAGATACCCTAAAGGGGACAGCCTTTGCA +GGCGTCCCAATGTATAGCTCTTTATCTACACTAGTCAGAAATGCAGACCCAGAATTTGTA +TTTTCTCCAGGTATAGTACCTGAATCTAATCACAGTACATGTGATAAGAAGACAGTACCT +ATCACATGGACAGGCTACCTACCAATATCAGGTGAGATGGAAAAAGTGACTGGATGTACA +GTTTTTTGTACACTAGCAGGACCTGGTGCTAGTTGTGAGGCCTATTCTGAAAATGGTATA +TTTAACATCAGTTCTCCAACATGTCTTGTAAACAAAGTCCAAAGATTTCGTGGATCTGAA +CAGAAAATAAATTTTATCTGTCAGCGGGTAGATCAGGATGTTGTTGTATACTGCAATGGG +CAAAAGAAAGTCATATTAACCAAAACTTTGGTTATTGGGCAGTGTATTTATACATTCACA +AGCCTATTTTCATTGATGCCTGATGTAGCCCACTCATTGGCTGTAGAATTATGTGTCCCG +GGATTACATGGATGGGCCACTGTCATGCTTCTATCAACATTCTGCTTTGGGTGGGTCTTG +ATTCCTGCGGTCACATTAATAATATTAAAGTGTCTAAGGGTTTTGACGTTTTCTTGTTCC +CATTACACTAATGAGTCAAAATTTAAATTCATCCTGGAAAAAGTTAAAATTGAATACCAA +AAGACTATGGGATCAATGGTGTGCGATGTATGTCATCATGAGTGTGAAACAGCAAAAGAA +CTTGAATCACATAGACAGAGTTGTATCAATGGACAATGTCCTTATTGCATGACAATAACT +GAAGCAACTGAAAGTGCCTTGCAAGCCCATTATTCCATTTGTAAATTGACAGGAAGATTT +CAGGAGGCACTGAAAAAGTCACTTAAAAAGCCAGAGGTAAAAAAAGGTTGTTACAGAACA +CTCGGGGTATTTAGATATAAAAGTAGATGTTATGTGGGTTTGGTATGGTGCCTATTGTTG +ACATGTGAAATTGTTATTTGGGCCGCAAGTGCAGAGACTCCACTAATGGAGTCAGGCTGG +TCAGATACGGCTCATGGTGTTGGTGAGATTCCAATGAAGACAGACCTCGAGCTGGACTTT +TCACTGCCTTCTTCATCCTCTTACAGTTATAGGAGAAAGCTCACAAACCCAGCCAATAAA +GAAGAGTCTATTCCCTTCCACTTCCAGATGGAAAAACAAGTAATTCATGCTGAAATCCAA +CCCCTGGGTCATTGGATGGATGCGACATTTAATATTAAGACTGCATTTCATTGTTATGGT +GCATGCCAGAAATACTCTTATCCATGGCAGACATCTAAGTGCTTCTTTGAAAAGGACTAC +CAGTATGAAACAGGCTGGGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGATGC +ACTGCTTGTGGTGTTTATCTCGATAAACTAAAATCTGTTGGGAAGGCCTATAAGATAATT +TCTTTAAAATATACCAGAAAGGTTTGTATTCAGTTAGGAACAGAACAAACTTGCAAGCAT +ATTGATGCAAATGATTGTTTAGTGACACCATCTGTGAAAGTTTGCATAGTGGGCACAGTT +TCAAAACTTCAACCATCTGATACTCTTTTGTTCTTAGGTCCACTAGAACAAGGGGGAATC +ATTCTTAAGCAATGGTGCACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCC +ACTCCCAGTGGTATGAGGTGTCCAGAGCACACTGGATCATTTAGGAAAATTTGCGGTTTT +GCTACTACACCAGTTTGTGAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATG +GCAACAAAAGATTCATTCCAATCATTTAACTTAACAGAACCTCACATCACAACAAACAAG +CTTGAATGGATCGACCCAGATGGGAATACAAGAGACCACGTAAACCTTGTCTTAAATAGA +GATGTCTCATTTCAGGATTTAAGTGATAACCCCTGTAAAGTAGACCTACACACACAAGCA +ATAGAAGGGGCATGGGGTTCTGGTGTAGGGTTTACACTCACATGTACTGTCGGATTAACA +GAGTGCCCAAGTTTTATGACATCAATTAAGGCATGTGACCTAGCTATGTGTTATGGATCA +ACAGTAACAAACCTTGCCAGGGGCTCTAATACAGTGAAAGTAGTTGGTAAAGGAGGCCAT +TCAGGGTCCTCATTTAAATGCTGTCATGATACAGATTGCTCCTCTGAAGGTTTACTTGCA +TCAGCCCCTCATCTTGAGAGGGTAACAGGATTCAATCAAATTGATTCAGATAAGGTTTAT +GATGATGGTGCACCACCTTGCACATTCAAATGCTGGTTCACTAAGTCAGGTGAGTGGCTT +CTTGGGATCTTAAACGGGAATTGGATTGTTGTTGTAGTGCTTGTTGTGATACTCATTCTC +TCTATCATAATGTTCAGTGTTTTGTGTCCCAGGAGAGGGCACAAGAAAACTGTCTAA +>MN095808 +ATGGAAGGGTGGTATCTGGTTGTTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCC +AAGACCATTTATGAGCTTAAAATGGAATGCCCGCACACTGTGGGTCTCGGTCAAGGTTAC +ATCATTGGCTCAACAGAACTAGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTC +GAGAGCTCTTGCAATTTTGATCTTCATACAACATCTATGGCCCAGAAGAGTTTCACCCAA +GTTGAATGGAGAAAGAAAAGTGACACAACTGATACCACAAATGCTGCGTCCACTACCTTT +GAAGCACAAACTAAAACTGTTAACCTTAGAGGGACTTGTATACTGGCACCTGAACTCTAT +GATACATTGAAGAAAGTAAAAAAGACAGTCCTGTGCTATGATCTAACATGTAATCAAACA +CATTGTCAGCCAACTGTCTATCTGATTGCACCTGTATTGACATGCATGTCAATAAGAAGT +TGTATGGCTAGTGTGTTTACAAGCAGGATTCAGGTGATTTATGAAAAGACACATTGTGTA +ACAGGTCAGCTGATTGAGGGTCAGTGTTTCAACCCAGCACACACATTGACATTATCTCAG +CCTGCTCACACTTATGATACTGTCACCCTTCCTATCTCTTGTTTTTTCACACCAAAGAAG +TCGGAGCAACTAAAAGTTATAAAAACATTTGAAGGAATTCTGACGAAGACAGGTTGCACG +GAGAATGCATTGCAGGGTTATTATGTGTGTTTTTTAGGGAGTCATTCAGAACCCTTAATT +GTTCCGAGTTTGGAGGACATACGGTCTGCTGAAGTTGTTAGTAGGATGCTTGTACACCCT +AGGGGAGAAGACCATGATGCCATACAGAATTCACAAAGTCACTTAAGAATAGTGGGACCT +ATCACAGCAAAAGTGCCATCAACTAGTTCCACAGATACCCTAAAGGGGACAGCCTTTGCA +GGCGTCCCAATGTATAGCTCTTTATCTACACTAGTCAGAAATGCAGACCCAGAATTTGTA +TTTTCTCCAGGTATAGTACCTGAATCTAATCACAGTACATGTGATAAGAAGACAGTACCT +ATCACATGGACAGGCTACCTACCAATATCAGGTGAGATGGAAAAAGTGACTGGATGTACA +GTTTTTTGTACACTAGCAGGACCTGGTGCTAGTTGTGAGGCCTATTCTGAAAATGGTATA +TTTAACATCAGTTCTCCAACATGTCTTGTAAACAAAGTCCAAAGATTTCGTGGATCTGAA +CAGAAAATAAATTTTATCTGTCAGCGGGTAGATCAGGATGTTGTTGTATACTGCAATGGG +CAAAAGAAAGTCATATTAACCAAAACTTTGGTTATTGGGCAGTGTATTTATACATTCACA +AGCCTATTTTCATTGATGCCTGATGTAGCCCACTCATTGGCTGTAGAATTATGTGTCCCG +GGATTACATGGATGGGCCACTGTCATGCTTCTATCAACATTCTGCTTTGGGTGGGTCTTG +ATTCCTGCGGTCACATTAATAATATTAAAGTGTCTAAGGGTTTTGACGTTTTCTTGTTCC +CATTACACTAATGAGTCAAAATTTAAATTCATCCTGGAAAAAGTTAAAATTGAATACCAA +AAGACTATGGAATCAATGGTGTGCGATGTATGTCATCATGAGTGTGAAACAGCAAAAGAA +CTTGAATCACATAGACAGAGTTGTATCAATGGACAATGTCCTTATTGCATGACAATAACT +GAAGCAACTGAAAGTGCCTTGCAAGCCCATTATTCCATTTGTAAATTGACAGGAAGATTT +CAGGAGGCACTGAAAAAGTCACTTAAAAAGCCAGAGGTAAAAAAAGGTTGTTACAGAACA +CTCGGGGTATTTAGATATAAAAGTAGATGTTATGTGGGTTTGGTATGGTGCCTATTGTTG +ACATGTGAAATTGTTATTTGGGCCGCAAGTGCAGAGACTCCACTAATGGAGTCAGGCTGG +TCAGATACGGCTCATGGTGTTGGTGAGATTCCAATGAAGACAGACCTCGAGCTGGACTTT +TCACTGCCTTCTTCATCCTCTTACAGTTATAGGAGAAAGCTCACAAACCCAGCCAATAAA +GAAGAGTCTATTCCCTTCCACTTCCAGATGGAAAAACAAGTAATTCATGCTGAAATCCAA +CCCCTGGGTCATTGGATGGATGCGACATTTAATATTAAGACTGCATTTCATTGTTATGGT +GCATGCCAGAAATACTCTTATCCATGGCAGACATCTAAGTGCTTCTTTGAAAAGGACTAC +CAGTATGAAACAGGCTGGGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGATGC +ACTGCTTGTGGTGTTTATCTCGATAAACTAAAATCTGTTGGGAAGGCCTATAAGATAATT +TCTTTAAAATATACCAGAAAGGTTTGTATTCAGTTAGGAACAGAACAAACTTGCAAGCAT +ATTGATGCAAATGATTGTTTAGTGACACCATCTGTGAAAGTTTGCATAGTGGGCACAGTT +TCAAAACTTCAACCATCTGATACTCTTTTGTTCTTAGGTCCACTAGAACAAGGGGGAATC +ATTCTTAAGCAATGGTGCACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCC +ACTCCCATTGGTATGAGGTGTCCAGAGCACACTGGATCATTTAGGAAAATTTGCGGTTTT +GCTACTACACCAGTTTGTGAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATG +GCAACAAAAGATTCATTCCAATCATTTAACTTAACAGAACCTCACATCACAACAGACAAG +CTTGAATGGATCGACCCAGATGGGAATACAAGAGACCACGTAAACCTTGTCTTAAATAGA +GATGTCTCATTTCAGGATTTAAGTGATAACCCCTGTAAAGTAGACCTACACACACAAGCA +ATAGAAGGGGCATGGGGTTCTGGTGTAGGGTTTACACTCACATGTACTGTCGGATTAACA +GAGTGCCCAAGTTTTATGACATCAATTAAGGCATGTGACCTAGCTATGTGTTATGGATCA +ACAGTAACAAACCTTGCCAGGGGCTCTAATACAGTGAAAGTAGTTGGTAAAGGAGGCCAT +TCAGGGTCCTCATTTAAATGCTGTCATGATACAGATTGCTCCTCTGAAGGTTTACTTGCA +TCAGCCCCTCATCTTGAGAGGGTAACAGGATTCAATCAAATTGATTCAGATAAGGTTTAT +GATGATGGTGCACCACCTTGCACATTCAAATGCTGGTTCACTAAGTCAGGTGAGTGGCTT +CTTGGGATCTTAAACGGGAATTGGATTGTTGTTGTAGTGCTTGTTGTGATACTCATTCTC +TCTATCATAATGTTCAGTGTTTTGTGTCCCAGGAGAGGGCACAAGAAAACTGTCTAA +>MN095815 +ATGGAAGGGTGGTATCTGGTTGTTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCC +AAGACCATTTATGAGCTTAAAATGGAATGCCCGCACACTGTGGGTCTCGGTCAAGGTTAC +ATCATTGGCTCAACAGAACTAGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTC +GAGAGCTCTTGCAATTTTGATCTTCATACAACATCTATGGCCCAGAAGAGTTTCACCCAA +GTTGAATGGAGAAAGAAAAGTGACACAACTGATACCACAAATGCTGCGTCCACTACCTTT +GAAGCACAAACTAAAACTGTTAACCTTAGAGGGACTTGTATACTGGCACCTGAACTCTAT +GATACATTGAAGAAAGTAAAAAAGACAATCCTGTGCTATGATCTAACATGTAATCAAACA +CATTGTCAGCCAACTGTCTATCTGATTGCACCTGTATTGACATGCATGTCAATAAGAAGT +TGTATGGCTAGTGTGTTTACAAGCAGGATTCAGGTGATTTATGAAAAGACACATTGTGTA +ACAGGTCAGCTGATTGAGGGTCAGTGTTTCAACCCAGCACACACATTGACATTATCTCAG +CCTGCTCACACTTATGATACTGTCACCCTTCCTATCTCTTGTTTTTTCACACCAAAGAAG +TCGGAGCAACTAAAAGTTATAAAAACATTTGAAGGAATTCTGACGAAGACAGGTTGCACG +GAGAATGCATTGCAGGGTTATTATGTGTGTTTTTTAGGGAGTCATTCAGAACCTTTAATT +GTTCCGAGTTTGGAGGACATACGGTCTGCTGAAGTTGTTAGTAGGATGCTTGTACACCCT +AGGGGAGAAGACCATGATGCCATACAGAATTCACAAAGTCACTTAAGAATAGTGGGACCT +ATCACAGCAAAAGTGCCATCAACTAGTTCCACAGATACCCTAAAGGGGACAGCCTTTGCA +GGCGTCCCAATGTATAGCTCTTTATCTACACTAGTCAGAAATGCAGACCCAGAATTTGTA +TTTTCTCCAGGTATAGTACCTGAATCTAATCACAGTACATGTGATAAGAAGACAGTACCT +ATCACATGGACAGGCTACCTACCAATATCAGGTGAGATGGAAAAAGTGACTGGATGTACA +GTTTTTTGTACACTAGCAGGACCTGGTGCTAGTTGTGAGGCCTATTCTGAAAATGGTATA +TTTAACATCAGTTCTCCAACATGTCTTGTAAACAAAGTCCAAAGATTTCGTGGATCTGAA +CAGAAAATAAATTTTATCTGTCAGCGGGTAGATCAGGATGTTGTTGTATACTGCAATGGG +CAAAAGAAAGTCATATTAACCAAAACTTTGGTTATTGGGCAGTGTATTTATACATTCACA +AGCCTATTTTCATTGATGCCTGATGTAGCCCACTCATTGGCTGTAGAATTATGTGTCCCG +GGATTACATGGATGGGCCACTGTCATGCTTCTATCAACATTCTGCTTTGGGTGGGTCTTG +ATTCCTGCGGTCACATTAATAATATTAAAGTGTCTAAGGGTTTTGACGTTTTCTTGTTCC +CATTACACTAATGAGTCAAAATTTAAATTCATCCTGGAAAAAGTTAAAATTGAATACCAA +AAGACTATGGGATCAATGGTGTGCGATGTATGTCATCATGAGTGTGAAACAGCAAAAGAA +CTTGAATCACATAGACAGAGTTGTATCAATGGACAATGTCCTTATTGCATGACAATAACT +GAAGCAACTGAAAGTGCCTTGCAAGCCCATTATTCCATTTGTAAATTGACAGGAAGATTT +CAGGAGGCACTGAAAAAGTCACTTAAAAAGCCAGAGGTAAAAAAAGGTTGTTACAGAACA +CTCGGGGTATTTAGATATAAAAGTAGATGTTATGTGGGTTTGGTATGGTGCCTATTGTTG +ACATGTGAAATTGTTATTTGGGCCGCAAGTGCAGAGACTCCACTAATGGAGTCAGGCTGG +TCAGATACGGCTCATGGTGTTGGTGAGATTCCAATGAAGACAGACCTCGAGCTGGACTTT +TCACTGCCTTCTTCATCCTCTTACAGTTATAGGAGAAAGCTCACAAACCCAGCCAATAAA +GAAGAGTCTATTCCCTTCCACTTCCAGATGGAAAAACAAGTAATTCATGCTGAAATCCAA +CCCCTGGGTCATTGGATGGATGCGACATTTAATATTAAGACTGCATTTCATTGTTATGGT +GCATGCCAGAAATACTCTTATCCATGGCAGACATCTAAGTGCTTCTTTGAAAAGGACTAC +CAGTATGAAACAGGCTGGGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGATGC +ACTGCTTGTGGTGTTTATCTCGATAAACTAAAATCTGTTGGGAAGGCCTATAAGATAATT +TCTTTAAAATATACCAGAAAGGTTTGTATTCAGTTAGGAACAGAACAAACTTGCAAGCAT +ATTGATGCAAATGATTGTTTAGTGACACCATCTGTGAAAGTTTGCATAGTGGGCACAGTT +TCAAAACTTCAACCATCTGATACTCTTTTGTTCTTAGGTCCACTAGAACAAGGGGGAATC +ATTCTTAAGCAATGGTGCACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCC +ACTCCCCGTGGTATGAGGTGTCCAGAGCACACTGGATCATTTAGGAAAATTTGCGGTTTT +GCTACTACACCAGTTTGTGAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATG +GCAACAAAAGATTCATTCCAATCATTTAACTTAACAGAACCTCACATCACAACAGACAAG +CTTGAATGGATCGACCCAGATGGGAATACAAGAGACCACGTAAACCTTGTCTTAAATAGA +GATGTCTCATTTCAGGATTTAAGTGATAACCCCTGTAAAGTAGACCTACACACACAAGCA +ATAGAAGGGGCATGGGGTTCTGGTGTAGGGTTTACACTCACATGTACTGTCGGATTAACA +GAGTGCCCAAGTTTTATGACATCAATTAAGGCATGTGACCTAGCTATGTGTTATGGATCA +ACAGTAACAAACCTTGCCAGGGGCTCTAATACAGTGAAAGTAGTTGGTAAAGGAGGCCAT +TCAGGGTCCTCATTTAAATGCTGTCATGATACAGATTGCTCCTCTGAAGGTTTACTTGCA +TCAGCCCCTCATCTTGAGAGGGTAACAGGATTCAATCAAATTGATTCAGATAAGGTTTAT +GATGATGGTGCACCACCTTGCACATTCAAATGCTGGTTCACTAAGTCAGGTGAGTGGCTT +CTTGGGATCTTAAACGGGAATTGGATTGTTGTTGTAGTGCTTGTTGTGATACTCATTCTC +TCTATCATAATGTTCAGTGTTTTGTTTCCCAGGAGAGGGCACAAGAAAACTGTCTAA +>MN095822 +ATGGAAGGGTGGTATCTGGTTGTTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCC +AAGACCATTTATGAGCTTAAAATGGAATGCCCGCACACTGTGGGTCTCGGTCAAGGTTAC +ATCATTGGCTCAACAGAACTAGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTC +GAGAGCTCTTGCAATTTTGATCTTCATACAACATCTATGGCCCAGAAGAGTTTCACCCAA +GTTGAATGGAGAAAGAAAAGTGACACAACTGATACCACAAATGCTGCGTCCACTACCTTT +GAAGCACAAACTAAAACTGTTAACCTTAGAGGGACTTGTATACTGGCACCTGAACTCTAT +GATACATTGAAGAAAGTAAAAAAGACAGTCCTGTGCTATGATCTAACATGTAATCAAACA +CATTGTCAGCCAACTGTCTATCTGATTGCACCTGTATTGACATGCATGTCAATAAGAAGT +TGTATGGCTAGTGTGTTTACAAGCAGGATTCAGGTGATTTATGAAAAGACACATTGTGTA +ACAGGTCAGCTGATTGAGGGTCAGTGTTTCAACCCAGCACACACATTGACATTATCTCAG +CCTGCTCACACTTATGATACTGTCACCCTTCCTATCTCTTGTTTTTTCACACCAAAGAAG +TCGGAGCAACTAAAAGTTATAAAAACGTTTGAAGGAATTCTGACGAAGACAGGTTGCACG +GAGAATGCATTGCAGGGTTATTATGTGTGTTTTTTAGGGAGTCATTCAGAACCTTTAATT +GTTCCGAGTTTGGAGGACATACGGTCTGCTGAAGTTGTTAGTAGGATGCTTGTACACCCT +AGGGGAGAAGACCATGATGCCATACAGAATTCACAAAGTCACTTAAGAATAGTGGGACCT +ATCACAGCAAAAGTGCCATCAACTAGTTCCACAGATACCCTAAAGGGGACAGCCTTTGCA +GGCGTCCCAATGTATAGCTCTTTATCTACACTAGTCAGAAATGCAGACCCAGAATTTGTA +TTTTCTCCAGGTATAGTACCTGAATCTAATCACAGTACATGTGATAAGAAGACAGTACCT +ATCACATGGACAGGCTACCTACCAATATCAGGTGAGATGGAAAAAGTGACTGGATGTACA +GTTTTTTGTACACTAGCAGGACCTGGTGCTAGTTGTGAGGCCTATTCTGAAAATGGTATA +TTTAACATCAGTTCTCCAACATGTCTTGTAAACAAAGTCCAAAGATTTCGTGGATCTGAA +CAGAAAATAAATTTTATCTGTCAGCGGGTAGATCAGGATGTTGTTGTATACTGCAATGGG +CAAAAGAAAGTCATATTAACCAAAACTTTGGTTATTGGGCAGTGTATTTATACATTCACA +AGCCTATTTTCATTGATGCCTGATGTAGCCCACTCATTGGCTGTAGAATTATGTGTCCCG +GGATTACATGGATGGGCCACTGTCATGCTTCTATCAACATTCTGCTTTGGGTGGGTCTTG +ATTCCTGCGGTCACATTAATAATATTAAAGTGTCTAAGGGTTTTGACGTTTTCTTGTTCC +CATTACACTAATGAGTCAAAATTTAAATTCATCCTGGAAAAAGTTAAAATTGAATACCAA +AAGACTATGGGATCAATGGTGTGCGATGTATGTCATCATGAGTGTGAAACAGCAAAAGAA +CTTGAATCACATAGACAGAGTTGTATCAATGGACAATGTCCTTATTGCATGACAATAACT +GAAGCAACTGAAAGTGCCTTGCAAGCCCATTATTCCATTTGTAAATTGACAGGAAGATTT +CAGGAGGCACTGAAAAAGTCACTTAAAAAGCCAGAGGTAAAAAAAGGTTGTTACAGAACA +CTCGGGGTATTTAGATATAAAAGTAGATGTTATGTGGGTTTGGTATGGTGCCTATTGTTG +ACATGTGAAATTGTTATTTGGGCCGCAAGTGCAGAGACTCCACTAATGGAGTCAGGCTGG +TCAGATACGGCTCATGGTGTTGGTGAGATTCCAATGAAGACAGACCTCGAGCTGGACTTT +TCACTGCCTTCTTCATCCTCTTACAGTTATAGGAGAAAGCTCACAAACCCAGCCAATAAA +GAAGAGTCTATTCCCTTCCACTTCCAGATGGAAAAACAAGTAATTCATGCTGAAATCCAA +CCCCTGGGTCATTGGATGGATGCGACATTTAATATTAAGACTGCATTTCATTGTTATGGT +GCATGCCAGAAATACTCTTATCCATGGCAGACATCTAAGTGCTTCTTTGAAAAGGACTAC +CAGTATGAAACAGGCTGGGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGATGC +ACTGCTTGTGGTGTTTATCTCGATAAACTAAAATCTGTTGGGAAGGCCTATAAGGTAATT +ACTTTAAAATATACCAGAAAGGTTTGTATTCAGTTAGGAACAGAACAAACTTGCAAGCAT +ATTGATGCAAATGATTGTTTAGTGACACCATCTGTGAAAGTTTGCATAGTGGGCACAGTT +TCAAAACTTCAACCATCTGATACTCTTTTGTTCTTAGGTCCACTAGAACAAGGGGGAATC +ATTCTTAAGCAATGGTGCACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCC +ACTCCCAGTGGTATGAGGTGTCCAGAGCACACTGGATCATTTAGGAAAATTTGCGGTTTT +GCTACTACACCAGTTTGTGAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATG +GCAACAAAAGATTCATTCCAATCATTTAACTTAACAGAACCTCACATCACAACAGACAAG +CTTGAATGGATCGACCCAGATGGGAATACAAGAGACCACGTAAACCTTGTCTTAAATAGA +GATGTCTCATTTCAGGATTTAAGTGATAACCCCTGTAAAGTAGACCTACACACACAAGCA +ATAGAAGGGGCATGGGGTTCTGGTGTAGGGTTTACACTCACATGTACTGTCGGATTAACA +GAGTGCCCAAGTTTTATGACATCAATTAAGGCATGTGACCTAGCTATGTGTTATGGATCA +ACAGTAACAAACCTTGCCAGGGGCTCTAATACAGTGAAAGTAGTTGGTAAAGGAGGCCAT +TCAGGGTCCTCATTTAAATGCTGTCATGATACAGATTGCTCCTCTGAAGGTTTACTTGCA +TCAGCCCCTCATCTTGAGAGGGTAACAGGATTCAATCAAATTGATTCAGATAAGGTTTAT +GATGATGGTGCACCACCTTGCACATTCAAATGCTGGTTCACTAAGTCAGGTGAGTGGCTT +CTTGGGATCTTAAACGGGAATTGGATTGTTGTTGTAGTGCTTGTTGTGATACTCATTCTC +TCTATCATAATGTTCAGTGTTTTGTTTCCCAGGAGAGGGCACAAGAAAACTGTCTAA +>MN258198 +GTAGTAGACTCCGCAAGAAGAAGCAAAAAATTAAAGAAGTGAGTTTAAAATGGAAGGGTG +GTATCTGGTTGCTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCCAAAACCATTTA +TGAGCTTAAAATGGAATGCCCGCACACTGTGGGTCTAGGTCAAGGTTACATTATTGGCTC +AACAGAATTGGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTTGAGAGCTCTTG +TAATTTTGATCTTCATACAACGTCTATGGCCCAGAAGAGTTTCACCCAAGTTGAATGGAG +AAAGAAAAGTGACACAACTGACACCACAAATGCTGCATCCACCACCTTTGAAGCACAGAC +CAAAACTGTTAACCTTAGAGGGACCTGTATATTGGCACCTGAACTTTATGACACGTTGAA +GAAAGTAAAGAAGACAGTCCTGTGTTATGATTTAACATGCAATCAGACACATTGTCAGCC +AACTGTCTATCTGATTGCACCTGTGCTGACATGCATGTCAATTAGAAGTTGTATGGCTAG +TGTTTTTACAAGCAGGATTCAGGTGATCTATGAAAAGACACATTGTGTAACAGGTCAGCT +GATTGAGGGTCAGTGTTTCAACCCAGCACATACATTGACACTATCTCAACCTGCTCACAC +TTATGACACTGTCACCCTGCCTATCTCTTGTTTTCTCACACCAAAGAAGTCGGAGCAGCT +AAAAGTTATAAAAACATTTGAAGGAATTCTGACAAAGACAGGTTGCACAGAGAATGCATT +GCAAGGTTATTATGTATGTTTTTTAGGGAGTCATTCAGAACCTTTAATTGTTCCAAGTCT +GGAGGACATACGGTCTGCTGAAGTTGTCAGTAGGATGCTTGTACACCCTAGGGGAGAGGA +CCATGACGCCATACAAAATTCACAGAGTTACTTGAGAATAGTGGGACCTATCACAGCAAA +AGTGCCATCAACTAGTTCCACAGATACCCTAAAAGGGACAGCCTTTGCAGGCGTCCCAAT +GTATAGCTCCTTATCGACACTAGTCAGGAATGCAGACCCAGAATTTGTGTTTTCTCCAGG +GATCATACCGGAATCTAACCATAGTATATGTGATAAGAAAACAGTACCTATCACATGGAC +AGGCTACCTACCAATATCAGGTGAGATGGAAAAAGTGACTGGATGTACAGTTTTCTGTAC +ACTGGCGGGACCTGGTGCTAGCTGTGAAGCCTATTCTGAGAATGGTATCTTCAACATTAG +TTCCCCAACATGTCTTGTAAACAAAGTCCAGAGATTTAGAGGGTCTGAACAGAAGATAAA +TTTTATCTGCCAGCGGGTAGATCAGGATGTCGTTGTATACTGCAATGGGCAGAAGAAAGT +CATATTAACCAAAACATTGGTTATTGGACAATGTATTTATACATTCACAAGCCTATTTTC +ATTGATGCCTGATGTAGCCCACTCACTAGCTGTAGAATTATGCGTCCCAGGATTGCATGG +ATGGGCCACTGTCATGCTTTTATCAACCTTCTGCTTCGGGTGGATCTTGATTCCTGCAGT +AACATTAATAATATTAAAATGTCTGAGGGTTTTGACATTTTCTTGTTCCCATTACACTAA +TGAGTCAAAATTTAAATTCATCCTGGAAAAAGTTAAAGTTGAATACCAGAAGACTATGGG +ATCAATGGTGTGTGATGTATGTCATCATGAGTGTGAAACAGCAAAGGAACTTGAATCACA +TAGACAAAGTTGCATTAATGGACAATGCCCTTACTGCATGACAATAACTGAAGCAACCGA +GAGTGCCTTGCAAGCCCATTATTCCATCTGTAAATTGACAGGGAGATTTCAGGAGGCACT +AAAAAAGTCACTTAAGAAGCCAGAGGTAAAAAAAGGTTGTTACAGAACACTAGGGGTATT +TCGCTACAAAAGTAGATGTTATGTGGGTTTGGTATGGTGCCTATTATTGATATGCGAAAT +TGTTATTTGGGCTGCAAGTGCAGAGACTCCATTAATGGAGTCAGGTTGGTCAGATACAGC +TCATGGTGTTGGTGAGATTCCAATGAAGACAGACTTAGAGCTAGACTTTTCATTGCCTTC +TTCATCCTCTTATAGTTACAGGAGAAAGCTCACAAACCCAGCTAACAAGGAAGAGTCTAT +TCCCTTCCACTTCCAGATGGAAAAACAAGTAATTCATGCTGAGATCCAACCCTTAGGTCA +TTGGATGGATGCAACATTCAATATTAAGACTGCATTCCATTGTTATGGTGCATGCCAGAA +ATACTCTTATCCATGGCAGACATCTAAGTGCTTCTTTGAAAAAGACTACCAGTATGAAAC +AGGCTGGGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGGTGTACTGCTTGTGG +TGTTTACCTTGATAAACTAAAATCTGTGGGAAAGGCCTATAAGATCATTTCTTTAAAATA +CACCAGAAAGGTTTGCATTCAGTTAGGAACAGAACAAACATGCAAGCATATTGATGCAAA +CGATTGTTTAGTAACACCATCTGTGAAGGTCTGCATAGTGGGCACAGTTTCTAAACTTCA +ACCATCTGATACTCTTTTATTCTTAGGTCCACTAGAACAAGGGGGGATCATCCTTAAACA +ATGGTGCACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCCACTCCTAGTGG +TATGAGGTGTCCAGAACACACTGGATCATTCAGGAAAATTTGCGGTTTTGCCACTACACC +AGTTTGTGAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATGGCAACAAAAGA +TTCATTCCAATCATTTAACTTAACAGAACCTCACATCACAGCAAATAAGCTTGAATGGAT +TGACCCAGATGGAAATACAAGAGACCATGTAAATCTTGTCTTAAATAGAGATGTTTCATT +TCAGGATTTAAGTGATAACCCCTGCAAAGTAGACTTGCACACACAAGCAATAGAAGGGGC +ATGGGGTTCTGGTGTCGGGTTTACACTTACATGTACTGTCGGATTAACAGAGTGCCCGAG +TTTTATGACATCAATTAAAGCATGTGACCTTGCTATGTGTTATGGATCAACAGTAGCAAA +CCTTGCCAGAGGCTCTAATACAGTGAAAGTAGTTGGTAAGGGAGGTCATTCAGGGTCTTC +ATTTAAATGCTGTCATGATACAGATTGCTCCTCTGAGGGTCTTCTTGCATCAGCCCCACA +TCTTGAGAGAGTAACAGGCTTCAATCAAATCGATTCAGATAAGGTTTATGATGATGGTGC +ACCACCTTGCACTTTCAAATGCTGGTTCACCAAGTCAGGTGAATGGCTTCTTGGGATCTT +AAACGGGAACTGGATTGTTGTTGTAGTGCTTATTGTGATACTCATTCTCTCCATCATAAT +GTTCAGTGTTCTCTGCCCCAGGAGAGGACACAAGAAAACTGTTTAAGCATTAACCTCAAA +TCCTACATTAGATTATATACATATATACATTTATACACTTCTTCATATTTAGCTGCACTA +AGATATTAATAAACTCTAGTTATTGACTTTATAAGATTATTATGGAACTAACCCCACTTA +AAAAAAACAAATACTTTACTCATATATAACTCCATATTCTCTTACCGAGGATTTTGT +>MN258204 +TAGTAGACTCCGCAAGAAGAAGCAAAAAATTAAAGAAGTGAGTTTAAAATGGAAGGGTGG +TATCTGGTTGCTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCCAAAACCATTTAT +GAGCTTAAAATGGAATGCCCGCACACTGTGGGTCTAGGTCAAGGTTACATTATTGGCTCA +ACAGAATTGGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTTGAGAGCTCTTGT +AATTTTGATCTTCATACAACGTCTATGGCCCAGAAGAGTTTCACCCAAGTTGAATGGAGA +AAGAAAAGTGACACAACTGACACCACAAATGCTGCATCCACCACCTTTGAAGCACAGACC +AAAACTGTTAACCTTAGAGGGACCTGTATATTGGCACCTGAACTTTATGACACGTTGAAG +AAAGTAAAGAAGACAGTCCTGTGTTATGATTTAACATGCAATCAGACACATTGTCAGCCA +ACTGTCTATCTGATTGCACCTGTGCTGACATGCATGTCAATTAGAAGTTGTATGGCTAGT +GTTTTTACAAGCAGGATTCAGGTGATCTATGAAAAGACACATTGTGTAACAGGTCAGCTG +ATTGAGGGTCAGTGTTTCAACCCAGCACATACATTGACACTATCTCAACCTGCTCACACT +TATGACACTGTCACCCTGCCTATCTCTTGTTTTCTCACACCAAAGAAGTCGGAGCAGCTA +AAAGTTATAAAAACATTTGAAGGAATTCTGACAAAGACAGGTTGCACAGAGAATGCATTG +CAAGGTTATTATGTATGTTTTTTAGGGAGTCATTCAGAACCTTTAATTGTTCCAAGTCTG +GAGGACATACGGTCTGCTGAAGTTGTCAGTAGGATGCTTGTACACCCTAGGGGAGAGGAC +CATGACGCCATACAAAATTCACAGAGTTACTTGAGAATAGTGGGACCTATCACAGCAAAA +GTGCCATCAACTAGTTCCACAGATACCCTAAAAGGGACAGCCTTTGCAGGCGTCCCAATG +TATAGCTCCTTATCGACACTAGTCAGGAATGCAGACCCAGAATTTGTGTTTTCTCCAGGG +ATCATACCGGAATCTAACCATAGTATATGTGATAAGAAAACAGTACCTATCACATGGACA +GGCTACCTACCAATATCAGGTGAGATGGAAAAAGTGACTGGATGTACAGTTTTCTGTACA +CTGGCGGGACCTGGTGCTAGCTGTGAAGCCTATTCTGAGAATGGTATCTTCAACATTAGT +TCCCCAACATGTCTTGTAAACAAAGTCCAGAGATTTAGAGGGTCTGAACAGAAGATAAAT +TTTATCTGCCAGCGGGTAGATCAGGATGTCGTTGTATACTGCAATGGGCAGAAGAAAGTC +ATATTAACCAAAACATTGGTTATTGGACAATGTATTTATACATTCACAAGCCTATTTTCA +TTGATGCCTGATGTAGCCCACTCACTAGCTGTAGAATTATGCGTCCCAGGATTGCATGGA +TGGGCCACTGTCATGCTTTTATCAACCTTCTGCTTCGGGTGGATCTTGATTCCTGCAGTA +ACATTAATAATATTAAAATGTCTGAGGGTTTTGACATTTTCTTGTTCCCATTACACTAAT +GAGTCAAAATTTAAATTCATCCTGGAAAAAGTTAAAGTTGAATACCAGAAGACTATGGGA +TCAATGGTGTGTGATGTATGTCATCATGAGTGTGAAACAGCAAAGGAACTTGAATCACAT +AGACAAAGTTGCATTAATGGACAATGCCCTTACTGCATGACAATAACTGAAGCAACCGAG +AGTGCCTTGCAAGCCCATTATTCCATCTGTAAATTGACAGGGAGATTTCAGGAGGCACTA +AAAAAGTCACTTAAGAAGCCAGAGGTAAAAAAAGGTTGTTACAGAACACTAGGGGTATTT +CGCTACAAAAGTAGATGTTATGTGGGTTTGGTATGGTGCCTATTATTGATATGCGAAATT +GTTATTTGGGCTGCAAGTGCAGAGACTCCATTAATGGAGTCAGGTTGGTCAGATACAGCT +CATGGTGTTGGTGAGATTCCAATGAAGACAGACTTAGAGCTAGACTTTTCATTGCCTTCT +TCATCCTCTTATAGTTACAGGAGAAAGCTCACAAACCCAGCTAACAAGGAAGAGTCTATT +CCCTTCCACTTCCAGATGGAAAAACAAGTAATTCATGCTGAGATCCAACCCTTAGGTCAT +TGGATGGATGCAACATTCAATATTAAGACTGCATTCCATTGTTATGGTGCATGCCAGAAA +TACTCTTATCCATGGCAGACATCTAAGTGCTTCTTTGAAAAAGACTACCAGTATGAAACA +GGCTGGGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGGTGTACTGCTTGTGGT +GTTTACCTTGATAAACTAAAATCTGTGGGAAAGGCCTATAAGATCATTTCTTTAAAATAC +ACCAGAAAGGTTTGCATTCAGTTAGGAACAGAACAAACATGCAAGCATATTGATGCAAAC +GATTGTTTAGTAACACCATCTGTGAAGGTCTGCATAGTGGGCACAGTTTCTAAACTTCAA +CCATCTGATACTCTTTTATTCTTAGGTCCACTAGAACAAGGGGGGATCATCCTTAAACAA +TGGTGCACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCCACTCCTAGTGGT +ATGAGGTGTCCAGAACACACTGGATCATTCAGGAAAATTTGCGGTTTTGCCACTACACCA +GTTTGTGAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATGGCAACAAAAGAT +TCATTCCAATCATTTAACTTAACAGAACCTCACATCACAGCAAATAAGCTTGAATGGATT +GACCCAGATGGAAATACAAGAGACCATGTAAATCTTGTCTTAAATAGAGATGTTTCATTT +CAGGATTTAAGTGATAACCCCTGCAAAGTAGACTTGCACACACAAGCAATAGAAGGGGCA +TGGGGTTCTGGTGTCGGGTTTACACTTACATGTACTGTCGGATTAACAGAGTGCCCGAGT +TTTATGACATCAATTAAAGCATGTGACCTTGCTATGTGTTATGGATCAACAGTAGCAAAC +CTTGCCAGAGGCTCTAATACAGTGAAAGTAGTTGGTAAGGGAGGTCATTCAGGGTCTTCA +TTTAAATGCTGTCATGATACAGATTGCTCCTCTGAGGGTCTTCTTGCATCAGCCCCACAT +CTTGAGAGAGTAACAGGCTTCAATCAAATCGATTCAGATAAGGTTTATGATGATGGTGCA +CCACCTTGCACTTTCAAATGCTGGTTCACCAAGTCAGGTGAATGGCTTCTTGGGATCTTA +AACGGGAACTGGATTGTTGTTGTAGTGCTTATTGTGATACTCATTCTCTCCATCATAATG +TTCAGTGTTCTCTGCCCCAGGAGAGGACACAAGAAAACTGTTTAAGCATTAACCTCAAAT +CCTACATTAGATTATATACATATATACATTTATACACTTCTTCATATTTAGCTGCACTAA +GATATTAATAAACTCTAGTTATTGACTTTATAAGATTATTATGGAACTAACCCCACTTAA +AAAAAACAAATACTTTACTCATATATAACTCCATATTCTCTTACCGAGGATTTTGT +>PV808468 +GACTCCGCAAGAAGAAGCAAAAAATTAAAGAAGTGAGTTTAAAATGGAAGGGTGGTATCT +GGTTGCTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCCAAAACCATTTATGAGCT +TAAAATGGAATGCCCGCATACTGTGGGTCTCGGTCAAGGTTACATTATTGGCTCAACAGA +ATTGGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTTGAGAGCTCTTGTAATTT +TGATCTTCATACAACGTCTATGGCCCAGAAGAGTTTTACCCAAGTTGAATGGAGAAAGAA +AAGTGATACAACTGATACCACAAATGCTGCATCCACCACCTTTGAAGCACAGACTAAAAC +TGTTAACCTTAGGGGGACCTGTGTATTGGCACCTGAACTTTATGACACATTGAAGAAAGT +AAAAAAGACAGTCCTGTGTTATGATCTAACATGCAATCAGACACATTGTCAGCCAACTGT +TTATCTGATTGCACCTGTGCTGACGTGCATGTCAATTAGAAGCTGTATGGCTAGTGTGTT +TACAAGCAGGATTCAAGTGATTTATGAGAAGACACATTGTGTAACAGGTCAGCTGATTGA +GGGTCAGTGTTTCAACCCAGCACACACATTGACACTGTCTCAACCTGCTCACACTTATGA +TACTGTTACCCTGCCTATCTCTTGTTTTTTTACACCAAAGAAGTCAGAGCAGTTGAAAGT +TATAAAAACATTTGAAGGGATTCTGACAAAGACAGGTTGCACAGAGAATGCATTACAAGG +TTATTATGTGTGTTTTTTAGGGAGTCATTCAGAACCTTTAATTGTTCCAAGTCTGGAGGA +TATACGGTCTGCTGAAGTTGTCAGTAGGATGCTTGTACACCCTAGAGGAGAAGACCATGA +TGCCATACAAAATTCACAGAGTTACTTGAGAATAGTGGGACCTATCACAGCAAAAGTGCC +ATCAACTAGTTCCACAGATACCCTAAAGGGGACAGCCTTTGCAGGTGTCCCAATGTATAG +CTCCTTATCTACACTAGTCAGAAATGCGGACCCAGAATTTGTGTTTTCTCCAGGTATAAT +ACCTGAATCTAATCACAGTGTATGTGATAAGAAGACAGTACCTATCACATGGACAGGCTA +CCTACCAATATCAGGGGAGATGGAAAAAGTGACTGGATGTACAGTTTTTTGTACACTGGC +GGGACCTGGTGCTAGCTGTGAGGCCTATTCTGAAAATGGTATCTTTAATATCAGTTCCCC +AACATGTCTTGTCAACAAAGTCCAAAGATTTAGAGGATCTGAGCAGAAGATAAATTTTAT +CTGTCAGCGGGTAGATCAGGATGTCGTTGTATACTGCAATGGGCAGAAGAAAGTCATATT +AACCAAAACTTTGGTTATTGGGCAGTGTATTTATACATTCACAAGCCTATTTTCATTGAT +GCCTGATGTAGCCCACTCACTCGCTGTAGAATTATGTGTCCCAGGATTACATGGGTGGGC +CACTGTAATGCTTCTATCAACATTCTGCTTCGGGTGGGTCTTGATTCCTGCAGTAACATT +AATAATATTAAAATGTCTAAGGGTTTTAACATTTTCTTGTTCCCATTACACTAATGAGTC +AAAATTTAAATTCATCCTGGAAAAAGTTAAAGTTGAATACCAGAAGACTATGGGATCAAT +GGTGTGTGATGTATGTCATCACGAGTGTGAGACAGCAAAGGAACTTGAGTCACATAGACA +AAGTTGCATTAATGGACAATGCCCTTATTGCATGACGATAACTGAAGCAACTGAAAGTGC +CTTGCAAGCCCATTATTCTATTTGTAAATTGACAGGAAGATTTCAGGAGGCACTAAAAAA +GTCACTTAAAAAGCCAGAGGTAAAAAAAGGTTGTTATAGAACACTTGGGGTATTTCGATA +CAAAAGTAGGTGTTATGTGGGTTTGGTATGGTGCCTATTGTTGACATGTGAAATTGTTAT +TTGGGCCGCAAGTGCAGAGACTCCACTAATGGAATCAGGCTGGTCAGATACAGCTCATGG +TGTTGGTGAGATTCCAATGAAGACAGACTTAGAGCTAGACTTTTCGCTGCCTTCTTCATC +CTCTTATAGTTACAGGAGAAAGCTCACAAACCCGGCTAATAAGGAAGAGTCTATCCCCTT +CCACTTCCAGATGGAAAAACAAGTGATTCATGCTGAGATCCAACCCTTAGGTCATTGGAT +GGATGCAACATTTAATATTAAGACTGCATTTCATTGTTATGGTGCATGCCAGAAATACTC +TTATCCATGGCAAACATCTAAGTGCTTCTTTGAAAAAGACTACCAGTATGAAACAGGCTG +GGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGGTGTACTGCTTGTGGTGTTTA +TCTTGATAAACTAAAATCTGTGGGAAAGGCCTATAAGATAATTTCTTTAAAATACACCAG +GAAGGTTTGCATTCAGTTAGGAACAGAACAAACATGCAAGCATATTGATGCAAATGATTG +TTTAGTAACACCATCTGTGAAGGTCTGCATAGTGGGCACAGTTTCTAAACTCCAACCATC +TGATACTCTCTTGTTCTTAGGTCCACTAGAACAGGGGGGGATCATCCTTAAACAATGGTG +CACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCTACTCCCAGTGGTATGAG +GTGTCCAGAACACACTGGATCATTCAGGAAAATTTGTGGTTTTGCCACTACACCAGTTTG +TGAATATCAAGGAAATACCATTTCTGGATACAAAAGAATGATGGCAACAAAAGATTCATT +CCAATCATTTAACTTAACAGAACCTCACATCACAACAAATAAGCTTGAATGGATTGACCC +AGATGGAAACACAAGAGACCATGTCAACCTTGTCTTAAATAGAGATGTTTCATTTCAGGA +TTTAAGTGATAACCCTTGTAAAGTGGACTTACACACACAAGCAATAGAAGGGGCATGGGG +TTCTGGTGTAGGGTTTACACTCACATGTACTGTTGGATTAACAGAATGCCCGAGTTTTAT +GACATCAATTAAGGCATGTGATCTTGCTATGTGTTATGGATCAACAGTGGCAAATCTTGC +CAGGGGCTCTAATACAGTGAAGGTAGTTGGCAAGGGAGGTCATTCAGGGTCTTCATTTAA +ATGCTGTCATGATACAGATTGTTCTGCTGAGGGTCTACTTGCATCAGCCCCACATCTTGA +GAGAGTGACAGGCTTCAATCAAATCGATTCAGATAAGGTTTATGATGATGGTGCACCACC +TTGCACATTCAAATGCTGGTTCACCAAGTCAGGTGAGTGGCTCCTTGGGATCTTAAACGG +GAATTGGATTGTTGTTGTAGTGCTTGTTGTGATACTCATTCTCTCTATCATAATGTTCAG +TATTCTGTGCCCCAGGAGAGGACACAAGAAAACTGTCTAAGCATTAACTGCAAGTCCTAC +AATAGATTATATACATTTATGCACTTTTTCATATTTAGCTGCACTAAGATATTAATAAAC +TCTAGTTATTGACTTTATAAGATTATTATGGAACTAACCTCACTTAAAAAAAACAAATAC +TTTACTCATATATAACTCCATATTCTCTTACCGAGGATTTTGTTCCTGCGGAGC diff --git a/data_output/nextstrain/orthohantavirus/andv/m/unreleased/tree.json b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/tree.json new file mode 100644 index 000000000..4e932fdea --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/tree.json @@ -0,0 +1 @@ +{"version": "v2", "meta": {"title": "Andes Virus M Segment (ANDV)", "updated": "2026-05-12", "build_url": "https://github.com/nextstrain/andv", "data_provenance": [{"name": "Pathoplexus", "url": "https://pathoplexus.org/"}], "maintainers": [{"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}], "display_defaults": {"map_triplicate": false, "color_by": "outbreak", "distance_measure": "div"}, "genome_annotations": {"GPC": {"end": 3468, "seqid": "defaults/m/reference.gb", "start": 52, "strand": "+", "type": "CDS"}, "Gc": {"end": 3468, "seqid": "defaults/m/reference.gb", "start": 2005, "strand": "+", "type": "CDS"}, "Gn": {"end": 2004, "seqid": "defaults/m/reference.gb", "start": 52, "strand": "+", "type": "CDS"}, "nuc": {"end": 3671, "start": 1, "strand": "+", "type": "source"}}, "colorings": [{"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "date", "title": "Collection Date", "type": "categorical"}, {"key": "region", "title": "Region", "type": "categorical", "scale": [["Africa", "#CEB541"], ["Europe", "#E39B39"], ["South America", "#E56C2F"]]}, {"key": "country", "title": "Country", "type": "categorical"}, {"key": "division", "title": "Admin Division", "type": "categorical"}, {"key": "host", "title": "Host", "type": "categorical"}, {"key": "abbr_authors", "title": "Authors", "type": "categorical"}, {"key": "dataUseTerms", "title": "Data use terms", "type": "categorical"}, {"key": "restrictedUntil", "title": "Restricted Until", "type": "categorical"}, {"key": "date_released", "title": "Release Date", "type": "categorical"}, {"key": "length", "title": "Length", "type": "continuous"}, {"key": "INSDC_accession", "title": "INSDC Accession", "type": "categorical"}, {"key": "PPX_accession", "title": "Pathoplexus Accession", "type": "categorical"}, {"key": "institution", "title": "Author Affiliations", "type": "categorical"}, {"key": "totalAmbiguousNucs", "title": "Ambiguous Nucleotides", "type": "continuous"}, {"key": "outbreak", "title": "outbreak", "type": "categorical"}], "filters": ["country", "division", "host", "abbr_authors", "clade_membership"], "geo_resolutions": [{"key": "country", "demes": {"Brazil": {"latitude": -10.3333332, "longitude": -53.1999999}, "Argentina": {"latitude": -37.052315, "longitude": -64.869142}, "Chile": {"latitude": -31.7613364, "longitude": -71.3187696}, "Netherlands": {"latitude": 52.1326, "longitude": 5.2913}, "Switzerland": {"latitude": 46.8182, "longitude": 8.2275}, "South Africa": {"latitude": -28.8166235, "longitude": 24.991639}}}], "panels": ["tree", "entropy"], "extensions": {"nextclade": {"clade_node_attrs": [{"name": "outbreak", "displayName": "Outbreak", "description": "Annotation of recent outbreaks (to be refined)", "skipAsReference": false}]}}}, "tree": {"name": "NODE_0000000", "node_attrs": {"div": 0, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A32C", "T34G", "G38A", "G41A", "G45T", "T47G", "T48A", "A51G", "C67T", "G70A", "T75C", "C76T", "T78G", "A89C", "G93A", "G114A", "G126A", "T129C", "C147T", "T156A", "C159A", "C171T", "C174T", "A186T", "A192T", "T195C", "T202C", "G211A", "T219A", "A223T", "C231A", "G234A", "T240A", "T252C", "T255C", "G271A", "C273T", "G276A", "G279A", "T282C", "T284A", "C285T", "C288T", "A303G", "A309G", "C315A", "T324C", "C327A", "A330G", "G339A", "C342A", "T345A", "C348A", "G355T", "A360G", "A361G", "T363C", "T372A", "A379C", "T387C", "A391G", "C394T", "C400T", "T402C", "C408T", "A429T", "A438T", "C441A", "G444C", "C447T", "A456G", "A459C", "T462C", "T474C", "T486A", "A507G", "T508A", "G510A", "A528G", "T531C", "T540A", "G546C", "A552T", "A582C", "A591C", "T597G", "G600A", "G603A", "A604G", "T618C", "A627T", "A636T", "T637C", "G639A", "T643C", "A645T", "T648A", "T669C", "T672A", "C675A", "C678A", "T681A", "A685G", "T688A", "T690C", "C699T", "G708A", "G714T", "G717C", "A720G", "G727T", "A730G", "A735G", "A747G", "T750A", "C751A", "G753T", "G756T", "T765C", "C768T", "G771A", "G774A", "T781C", "G786A", "G798T", "A807T", "G810A", "T816C", "T826C", "A829C", "T830A", "G837A", "T841C", "G843A", "C849T", "A852C", "G855T", "T858A", "T861A", "A864G", "T870C", "G876A", "C880A", "C888T", "T891A", "G894A", "A897T", "A900G", "G910C", "C912A", "A915T", "G918A", "T921C", "A928G", "C931T", "A937C", "A939G", "T951A", "C954A", "T970A", "C971G", "A972T", "T978C", "C981T", "A984T", "A993C", "G996A", "A1002T", "A1011T", "C1014T", "C1017T", "T1026C", "T1038A", "C1047G", "A1050G", "G1054A", "A1071G", "T1077A", "T1083G", "A1086C", "G1087A", "T1092A", "T1101C", "A1108G", "C1109T", "A1125T", "G1126A", "A1128C", "A1132C", "C1146T", "C1149T", "C1150T", "A1152G", "A1155T", "A1158C", "T1164C", "G1179A", "T1182A", "T1188C", "T1197C", "A1203T", "C1204T", "A1206G", "A1212C", "T1218A", "T1221A", "A1242G", "A1251C", "C1260A", "T1266C", "A1281C", "C1290T", "A1293G", "G1295A", "C1300A", "T1302A", "A1305G", "A1311G", "G1314A", "A1317G", "A1320T", "T1332C", "C1336A", "G1338A", "A1341T", "G1347A", "T1353C", "C1365T", "A1374G", "A1380G", "C1383G", "A1386C", "A1389G", "A1395G", "G1401A", "G1410C", "G1413A", "T1416C", "T1419A", "A1425T", "T1440C", "A1458G", "C1464T", "G1470A", "A1476C", "A1479G", "C1488G", "G1491A", "A1494C", "C1509A", "A1530C", "C1536T", "G1542C", "G1546A", "T1549C", "G1551A", "T1554A", "T1557A", "G1560A", "G1561A", "C1563T", "A1570G", "A1572T", "A1573G", "A1575C", "T1576C", "G1581A", "G1583T", "T1584C", "C1585T", "G1589A", "T1593G", "T1595C", "G1596A", "G1599A", "T1608C", "C1611A", "C1617T", "C1641T", "C1644A", "A1650G", "A1660G", "A1665G", "A1671G", "T1677A", "G1692T", "C1695T", "G1699A", "A1701C", "T1704C", "T1707C", "T1734A", "G1745A", "G1749A", "T1752C", "T1755C", "C1758T", "T1770C", "A1785C", "A1788G", "A1794G", "T1800A", "G1812A", "C1818T", "C1827T", "T1830C", "A1845C", "G1857A", "A1860T", "G1863A", "A1866G", "G1869A", "T1875G", "A1878G", "G1881A", "G1887A", "A1892G", "A1906C", "A1908T", "C1912T", "C1914A", "G1917A", "T1929C", "A1932G", "A1938G", "T1941C", "G1947T", "T1950C", "A1956T", "C1962T", "C1963G", "A1965G", "G1971A", "A1981C", "G1984A", "A1987G", "T1989A", "C1995T", "A1998T", "G2007A", "A2016T", "A2017C", "C2028A", "G2040A", "T2043A", "T2055A", "G2058A", "A2059G", "G2070A", "C2076T", "C2077T", "C2079A", "G2085A", "C2088T", "G2097A", "T2118C", "G2124A", "A2136T", "C2139T", "A2142T", "A2151G", "G2157A", "T2160A", "T2163C", "C2175T", "A2187G", "T2196A", "T2202A", "C2208T", "C2212A", "C2214A", "C2215T", "T2220G", "G2235A", "C2286T", "G2301A", "A2304T", "T2305G", "T2307A", "C2313T", "G2325A", "C2328T", "C2331T", "C2346T", "T2355C", "T2364G", "C2367T", "A2373T", "G2376A", "G2382A", "T2385A", "A2388T", "T2397A", "T2406G", "T2409C", "C2412T", "G2433A", "C2439A", "A2448C", "T2451C", "A2460G", "T2463C", "A2469G", "T2475A", "T2478C", "G2484A", "A2496G", "T2502A", "G2535A", "A2538T", "T2553A", "A2559T", "G2562T", "C2565G", "A2568T", "A2574T", "A2583G", "T2592C", "T2605C", "T2610G", "C2614T", "G2625T", "A2628G", "C2631T", "T2637G", "C2649T", "A2652T", "A2658T", "C2673T", "C2691A", "T2694A", "C2695A", "C2697T", "G2709A", "A2715T", "G2718A", "C2721T", "A2730C", "T2733C", "A2734C", "C2745T", "T2748C", "T2754A", "A2763T", "T2766A", "A2772G", "A2781G", "T2790C", "A2814C", "A2820G", "C2841T", "A2847T", "T2853A", "C2856T", "C2868T", "C2883T", "A2889T", "G2895T", "A2902C", "A2904T", "C2907T", "C2910T", "C2916T", "C2922A", "A2925G", "C2937T", "T2950C", "A2973T", "C2977T", "A2979G", "C2982T", "T3012A", "A3018T", "C3030T", "A3033C", "C3042T", "A3045T", "A3060G", "T3066C", "G3069T", "G3081A", "A3093T", "T3096A", "A3117T", "A3118G", "A3120T", "C3124T", "T3126C", "C3129T", "C3135T", "T3138C", "A3150G", "A3165T", "C3168G", "G3177T", "C3180T", "A3204T", "C3210T", "C3213T", "A3219G", "T3223C", "A3225T", "C3226G", "T3240A", "G3252A", "A3255T", "A3258T", "T3267C", "A3270G", "A3279C", "T3282C", "T3288C", "A3303T", "A3306T", "C3312T", "C3318T", "A3321G", "A3339T", "T3342A", "C3360T", "C3366T", "G3369T", "T3372C", "A3387T", "T3396G", "C3405G", "T3408C", "C3409T", "C3411T", "C3417A", "A3421C", "G3423C", "C3426T", "G3430A", "T3433C", "G3435C", "T3438C", "C3441A", "A3442C", "G3450A", "C3465T", "C3470T", "G3474-", "T3478-", "C3479-", "A3480-", "C3482-", "T3483-", "C3484-", "C3485-", "T3486-", "C3488-", "G3493-", "A3494-", "T3495-", "C3496-", "A3497-", "T3506C", "C3515A", "C3516T", "G3536-", "A3537-", "A3545G", "A3546C", "G3553T", "G3559A", "T3563A", "G3569C", "A3570T", "T3575-", "T3577C", "G3578-", "A3580-", "T3583-", "A3584-", "C3589T", "A3590T", "C3591A", "T3617C", "T3621A", "C3645A"], "GPC": ["Y13S", "A54T", "I58L", "A74T", "F78Y", "I114V", "L153I", "I185V", "D206E", "I212V", "S213T", "E222D", "V226L", "L234I", "T235S", "I260H", "L277I", "A287P", "S293G", "H294Y", "T311A", "K315Q", "N334S", "A335T", "V346I", "T353I", "V359I", "I361L", "R415K", "V499I", "V504I", "I507V", "I508V", "C511F", "R513K", "L515A", "I537V", "V550I", "R565K", "I579M", "L638V", "I644L", "V645I", "M656L", "I670V", "P721T", "S752A", "P882T", "E933D", "M1006I", "T1023S", "L1059V", "L1120F", "M1124L", "V1127I"], "Gc": ["M5L", "I19V", "P70T", "S101A", "P231T", "M355I", "T372A", "L408V", "L469F", "M473L", "V476I"], "Gn": ["V7I", "Y13S", "S51T", "I58L", "A74T", "D88E", "A102S", "I114V", "P117S", "L153I", "I212V", "S213T", "E222D", "V226L", "L234I", "L277I", "A287P", "S293G", "H294Y", "T311A", "V346I", "T353V", "V359I", "I361L", "R415K", "V499I", "V504I", "I507V", "I508V", "C511I", "R513K", "V514M", "L515A", "I537V", "V550I", "R565K", "I579M", "K614R", "L638I", "I644L", "V645I", "I646V"]}, "labels": {"aa": "GPC: Y13S, A54T, I58L, A74T, F78Y, I114V, L153I, I185V, D206E, I212V, S213T, E222D, V226L, L234I, T235S, I260H, L277I, A287P, S293G, H294Y, T311A, K315Q, N334S, A335T, V346I, T353I, V359I, I361L, R415K, V499I, V504I, I507V, I508V, C511F, R513K, L515A, I537V, V550I, R565K, I579M, L638V, I644L, V645I, M656L, I670V, P721T, S752A, P882T, E933D, M1006I, T1023S, L1059V, L1120F, M1124L, V1127I; Gc: M5L, I19V, P70T, S101A, P231T, M355I, T372A, L408V, L469F, M473L, V476I; Gn: V7I, Y13S, S51T, I58L, A74T, D88E, A102S, I114V, P117S, L153I, I212V, S213T, E222D, V226L, L234I, L277I, A287P, S293G, H294Y, T311A, V346I, T353V, V359I, I361L, R415K, V499I, V504I, I507V, I508V, C511I, R513K, V514M, L515A, I537V, V550I, R565K, I579M, K614R, L638I, I644L, V645I, I646V"}}, "children": [{"name": "NODE_0000001", "node_attrs": {"div": 0.0147532, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G43T", "C94T", "T177A", "A189G", "C195G", "C201T", "T267A", "T288A", "A381T", "C402A", "T477C", "G615A", "C669G", "T729G", "G759A", "T805C", "G846A", "T1194C", "C1233T", "T1236C", "G1305T", "T1308A", "C1353T", "A1359T", "C1392A", "A1437G", "T1594G", "C1861T", "A1896G", "T1966C", "C2145A", "G2280A", "T2481C", "T2485C", "T2526C", "A2535G", "A2586T", "C2596T", "T2598G", "C2685A", "A2844G", "A2970G", "G3021A", "C3090T", "C3126A", "C3279T", "T3432C", "A3487-", "A3492-", "C3512T", "A3585-"], "GPC": ["V7I", "S51P", "P117S", "I646V"], "Gn": ["T51P", "F78Y", "D206E", "I260H", "I511F", "I638V"]}, "labels": {"aa": "GPC: V7I, S51P, P117S, I646V; Gn: T51P, F78Y, D206E, I260H, I511F, I638V"}}, "children": [{"name": "NODE_0000002", "node_attrs": {"div": 0.0374006, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A159T", "A291G", "C489T", "C551A", "G567A", "G609A", "C660T", "A681C", "C687T", "A963G", "T972C", "A994C", "G1167A", "T1275C", "C1284T", "T1320C", "A1347G", "G1371T", "T1398C", "C1410G", "T1425C", "G1458T", "A1467C", "T1473A", "A1581G", "G1590A", "T1605A", "A1629T", "T1692C", "A1719G", "T1810C", "G1866A", "G1878A", "G1953A", "T2103A", "A2325G", "A2382T", "C2463T", "C2466T", "G2469A", "G2472A", "A2499G", "G2628A", "T2631A", "G2637A", "C2730T", "T2868C", "C2902A", "T2904G", "A2988G", "T3069G", "G3147T", "A3153T", "C3192T", "G3219A", "G3336A", "A3342G"], "GPC": ["D88E", "A102S", "T167N", "A311S", "I353V", "S1023A"], "Gn": ["T167N", "A311S", "K315Q"]}, "labels": {"aa": "GPC: D88E, A102S, T167N, A311S, I353V, S1023A; Gn: T167N, A311S, K315Q"}}, "children": [{"name": "PP_006W0VA|VARS/22-01|Brazil/2022-12-09", "node_attrs": {"div": 0.148165, "strain": {"value": "PP_006W0VA|VARS/22-01|Brazil/2022-12-09"}, "accession": "PP_006W0VA", "author": {"author": "Amgarten, D.; Dorlass, E.; dos Santos Soares, A. C.; Moreira Salles, A. P.; Takara, A.; da Silva Santos, A.; Oliveira Sartori, B. S.; Petroni, R. C.; Sallum Filho, C. F. C.; Hidal, J. T.; Camargo, L. F. A.; Doi, A.; Rebello Pinho, J. R.", "value": "Amgarten, D.; Dorlass, E.; dos Santos Soares, A. C.; Moreira Salles, A. P.; Takara, A.; da Silva Santos, A.; Oliveira Sartori, B. S.; Petroni, R. C.; Sallum Filho, C. F. C.; Hidal, J. T.; Camargo, L. F. A.; Doi, A.; Rebello Pinho, J. R."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Brazil"}, "date": {"value": "2022-12-09"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-01-18"}, "PPX_accession": {"value": "PP_006W0VA.1", "url": "https://pathoplexus.org/seq/PP_006W0VA.1"}, "abbr_authors": {"value": "Amgarten et al."}, "INSDC_accession": {"value": "OQ092244.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OQ092244.1"}, "institution": {"value": "Hospital Israelita Albert Einstein, Varsomics"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3387}}, "branch_attrs": {"mutations": {"nuc": ["A99G", "C111A", "A126G", "C129T", "C141T", "G144A", "T147C", "T150C", "C180G", "T192A", "G198A", "A199G", "A211T", "A216T", "A231G", "C243T", "T246C", "T258C", "A261T", "A279G", "C282T", "T321A", "C324T", "A339T", "A357C", "A372C", "C375T", "C376T", "T378A", "T381G", "G384C", "T390C", "A405G", "T418C", "C454T", "A486G", "G487A", "G495A", "A501T", "A525C", "G558A", "A567T", "T570C", "A576C", "T585C", "C591T", "A594T", "G597A", "A600G", "G604A", "T606A", "C618T", "A630C", "C633T", "T636A", "C637T", "A642C", "T645C", "C681T", "T687G", "C690T", "G711A", "G720A", "C721A", "T722A", "A723T", "A732T", "A744G", "A780C", "G783T", "T792C", "T798C", "A810G", "A819G", "A822G", "A830T", "T840C", "C841T", "A843G", "A846T", "A858T", "C870T", "A874C", "T888C", "G900A", "A924T", "T930C", "C933T", "G939A", "G945A", "A948G", "A952G", "A957T", "A982T", "T1017G", "T1032C", "A1035G", "C1042T", "A1052G", "T1053C", "A1054C", "C1059T", "A1062T", "G1071C", "T1074C", "A1095G", "T1098A", "C1101T", "T1116C", "G1119A", "T1131A", "G1152A", "G1177A", "A1179T", "A1185T", "A1191T", "C1194G", "T1204C", "C1212A", "T1215C", "A1218G", "C1251A", "T1254C", "C1257T", "A1269G", "A1287G", "G1293A", "A1295G", "C1329G", "C1332T", "T1353G", "G1374A", "G1380A", "G1389A", "T1404C", "T1407A", "A1413G", "C1416T", "C1428T", "C1434T", "G1446A", "C1461T", "T1468C", "T1480C", "G1488T", "A1503T", "A1509G", "C1519T", "T1521A", "C1530G", "A1557T", "A1560C", "T1572C", "G1573A", "T1574C", "A1578C", "A1587G", "G1593A", "C1595T", "A1596G", "A1611T", "T1614C", "T1620C", "G1626A", "T1629C", "A1632G", "T1639A", "G1647T", "A1653G", "T1656C", "T1662A", "C1668T", "C1707T", "A1725T", "A1734T", "A1737G", "T1743C", "A1749G", "C1755T", "A1764C", "G1794A", "A1800C", "A1815G", "T1825G", "A1836G", "T1837C", "A1848G", "T1860C", "G1875C", "A1881G", "A1884T", "A1893G", "C1905T", "T1908G", "T1923C", "C1929T", "C1941T", "C1950A", "T1951C", "T1983A", "A1989T", "T1995A", "T1998A", "A2004T", "A2013G", "T2016C", "A2028C", "A2034T", "T2037C", "T2052G", "G2082A", "C2083T", "T2091C", "A2094T", "C2115T", "G2130A", "C2133G", "T2158A", "C2163T", "C2166A", "C2169T", "T2175C", "A2184G", "A2205G", "T2208C", "G2217A", "A2238C", "T2247A", "G2250A", "T2265C", "C2277T", "A2283G", "A2301G", "T2304A", "C2316T", "G2334A", "A2343G", "T2346G", "C2355T", "G2364A", "A2376G", "C2391T", "T2394A", "T2400C", "T2415C", "A2424G", "T2430C", "T2442C", "T2454G", "G2460A", "T2466G", "A2484G", "G2496A", "A2502G", "A2520T", "C2556T", "G2583A", "T2589A", "T2595A", "A2622G", "C2635T", "A2655G", "A2664C", "G2670T", "T2673C", "T2724A", "T2763A", "G2772A", "A2778G", "G2781A", "C2787A", "C2790T", "A2796T", "A2805G", "C2814T", "G2820A", "T2838C", "T2847C", "A2863G", "T2874C", "C2886T", "T2898C", "A2901G", "A2913G", "T2923C", "T2928C", "A2929C", "A2931G", "T2937A", "A2940C", "T2943C", "G2946A", "T2977C", "G3000T", "T3015G", "T3045G", "G3054A", "G3069A", "A3072T", "T3102C", "A3108T", "A3114T", "C3123T", "A3130C", "G3132A", "T3135A", "T3156A", "A3162G", "T3171C", "A3174T", "A3183T", "T3213C", "T3222A", "T3243C", "C3267T", "T3273A", "C3282T", "G3285A", "T3303C", "T3309C", "A3313G", "G3345A", "A3363G", "T3366C", "T3369G", "C3372T", "T3381A", "G3390A", "T3393C", "G3405A", "C3408T", "T3414C", "T3426C", "C3438T", "G3444A", "C3453T"], "GPC": ["I50V", "T54S", "T104A", "V146I", "E175D", "V185I", "L224N", "I227V", "S235T", "H260L", "E265D", "I301V", "T335P", "V376I", "K415R", "I426M", "V508T", "A515V", "F530I", "S592A", "K614R", "S703T", "D933E", "T938A", "T1088A"], "Gc": ["S52T", "T287A", "T437A"], "Gn": ["I50V", "A54S", "T104A", "V146I", "E175D", "L224N", "I227V", "H260L", "E265D", "I301V", "N334S", "A335P", "V376I", "K415R", "I426M", "V508T", "M514V", "A515V", "F530I", "S592A"]}, "labels": {"aa": "GPC: I50V, T54S, T104A, V146I, E175D, V185I, L224N, I227V, S235T, H260L, E265D, I301V, T335P, V376I, K415R, I426M, V508T, A515V, F530I, S592A, K614R, S703T, D933E, T938A, T1088A; Gc: S52T, T287A, T437A; Gn: I50V, A54S, T104A, V146I, E175D, L224N, I227V, H260L, E265D, I301V, N334S, A335P, V376I, K415R, I426M, V508T, M514V, A515V, F530I, S592A"}}}, {"name": "NODE_0000003", "node_attrs": {"div": 0.0654554, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T168G", "T201A", "C255A", "G330A", "A342C", "C363A", "A393C", "A399T", "T408A", "A417C", "C444G", "G456T", "C493T", "A510C", "G565A", "C582A", "T612C", "C624T", "T646G", "A648T", "A726G", "G735A", "A891T", "T915C", "G966A", "C983G", "C993A", "T1002A", "C1005A", "C1104T", "C1164T", "A1209T", "G1335A", "C1494A", "A1503G", "C1515T", "A1527C", "A1683C", "T1698C", "C1701A", "T1773A", "C1785T", "C1845G", "C1873T", "A1911C", "A1980G", "T2016G", "A2125C", "G2220T", "T2271A", "T2289A", "T2379A", "G2406T", "A2433G", "G2445A", "C2478T", "T2599C", "A2607T", "A2619G", "A2718G", "C2748A", "T2757A", "T2842C", "A2850C", "T2856C", "T2958C", "C2964G", "A3012T", "A3051T", "T3255C", "T3354A", "A3400G", "A3441T", "T3473-", "C3518A", "A3559-", "A3576-", "C3577-", "G3579-"], "GPC": ["V172I", "S199A", "I1006M", "I1117V"], "Gc": ["E282D", "I355M", "I466V"], "Gn": ["V172I", "S199A"]}, "labels": {"aa": "GPC: V172I, S199A, I1006M, I1117V; Gc: E282D, I355M, I466V; Gn: V172I, S199A"}}, "children": [{"name": "PP_006VLUU|Ol22996|nan/XXXX-XX-XX", "node_attrs": {"div": 0.173715, "strain": {"value": "PP_006VLUU|Ol22996|nan/XXXX-XX-XX"}, "accession": "PP_006VLUU", "author": {"author": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C.", "value": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "1997-12-01"}, "PPX_accession": {"value": "PP_006VLUU.1", "url": "https://pathoplexus.org/seq/PP_006VLUU.1"}, "abbr_authors": {"value": "Calderon et al."}, "INSDC_accession": {"value": "AF028024.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF028024.1"}, "institution": {"value": "University of Nevada, Microbiology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "host": {"value": "mice and others"}, "length": {"value": 3646}}, "branch_attrs": {"mutations": {"nuc": ["A30G", "C32T", "T43C", "A81G", "T94G", "G96C", "C111T", "C141T", "G144A", "T150C", "G153T", "A156T", "A183G", "G193A", "G194A", "G195C", "A204C", "A209G", "A211G", "T222C", "T223C", "A225G", "C237T", "A244G", "C253T", "C256T", "T258C", "A261C", "A264G", "T265C", "T273C", "G309A", "A327C", "A339T", "T340G", "C342T", "A345G", "G361A", "A366G", "T378A", "G391A", "T394C", "T399C", "C406T", "A408G", "G423T", "G427A", "T429C", "A432G", "A436C", "C442T", "T447C", "T456C", "C458A", "T465C", "A473G", "T492C", "A501C", "C531T", "C546G", "T548C", "T552C", "G558A", "T561C", "G564A", "A594T", "C621T", "T627C", "G628T", "T636G", "T663C", "A678T", "C690T", "T696C", "A708G", "G720A", "A723C", "G729A", "G747A", "T756C", "A762T", "A771G", "G783A", "A786G", "T798A", "A822G", "T834G", "A876G", "T882A", "A892C", "C903T", "T909C", "C921T", "T930C", "T931C", "A936G", "G945C", "A951G", "C978T", "T987C", "C991T", "G999A", "A1002G", "G1009T", "T1017A", "C1029T", "T1032A", "A1044T", "G1047A", "A1048C", "A1052G", "A1054G", "A1087T", "A1089G", "A1092T", "G1119A", "A1126C", "A1161T", "A1182T", "A1191T", "C1197T", "T1203C", "G1206A", "T1215A", "T1233C", "C1236T", "T1239A", "T1248G", "T1290G", "T1299C", "A1300C", "A1302G", "T1305C", "A1308T", "G1311A", "T1326C", "C1329T", "G1339A", "T1341G", "T1365C", "G1374A", "C1386A", "T1387C", "G1395A", "C1398A", "T1399C", "G1410A", "A1419T", "C1425A", "C1440T", "G1446A", "C1467T", "A1470G", "C1476T", "G1479A", "A1491T", "A1494G", "T1495C", "A1497G", "T1500C", "A1509C", "T1521C", "A1524T", "C1533T", "A1566T", "T1567C", "G1591A", "T1602C", "T1620A", "G1626A", "A1632G", "A1638G", "T1639C", "T1641C", "G1647A", "A1653G", "T1656G", "T1662A", "G1665A", "G1674A", "G1713A", "A1730T", "A1731G", "C1732T", "A1767G", "A1773G", "T1776C", "A1800T", "C1809T", "T1833C", "A1848G", "A1857G", "G1875A", "A1887G", "G1892A", "A1895G", "A1917T", "G1938A", "C1941T", "C1950A", "G1968T", "A1989C", "T1995A", "A2004G", "G2022A", "A2043C", "G2059A", "T2061C", "A2064G", "A2070G", "A2073T", "G2082A", "A2085T", "A2097T", "A2103C", "C2109T", "T2139C", "C2166T", "G2178A", "G2187A", "A2193G", "A2196T", "A2202T", "G2217A", "T2220C", "A2235C", "T2244C", "A2271G", "T2292C", "A2295C", "G2310A", "T2313C", "C2316T", "T2337C", "T2358C", "C2370T", "A2376G", "A2397C", "T2412G", "T2415C", "T2430A", "C2448T", "T2454A", "A2457G", "A2467C", "A2475T", "A2502T", "C2505T", "G2535A", "G2547A", "C2556T", "T2571G", "T2574C", "A2577G", "T2589G", "C2592T", "T2595G", "T2596C", "G2598A", "G2601T", "A2613G", "T2634A", "T2649G", "T2652C", "T2661C", "A2664C", "G2670A", "T2676A", "T2679G", "T2715A", "A2727C", "T2730A", "C2734A", "A2739G", "T2742C", "T2793A", "A2796C", "A2803C", "C2814A", "C2829T", "T2841C", "G2844C", "G2871A", "T2895C", "T2919C", "A2922T", "G2925A", "T2934C", "T2937C", "C2950T", "C2976T", "G2979A", "C3033A", "T3039A", "A3048G", "C3057T", "G3060A", "A3072C", "T3078C", "A3084C", "T3090C", "T3105C", "G3118A", "T3124C", "A3126G", "G3132A", "T3135G", "C3138T", "T3159A", "G3168A", "T3177C", "T3180C", "T3186C", "T3222G", "A3234G", "C3237T", "T3243C", "A3252G", "T3258A", "A3261G", "C3267T", "T3276C", "C3282T", "T3306C", "T3318C", "A3320G", "T3333C", "G3345A", "G3357A", "T3360C", "A3363G", "T3387A", "T3393C", "G3394A", "G3396A", "C3403T", "A3418G", "A3420G", "T3441C", "A3460G", "T3465G", "T3472G", "-3473A", "-3474A", "A3475T", "C3476A", "-3478T", "-3479G", "-3480T", "-3482T", "-3483G", "-3484C", "-3485A", "-3486T", "-3487T", "-3488T", "T3491G", "-3492A", "-3494A", "-3495T", "-3496A", "-3497A", "T3500A", "C3502-", "G3509T", "C3510A", "T3516C", "A3521G", "C3530A", "A3531C", "T3533-", "A3534-", "A3535-", "T3538-", "C3550G", "T3555-", "A3556-", "T3557-", "T3558-", "C3569T", "T3570-", "T3571-", "T3572-", "A3573-", "T3574-", "A3581-", "C3582-", "C3624T", "A3630T", "T3631C", "T3634G", "A3645C"], "GPC": ["L15V", "G48N", "E53G", "T54A", "N65D", "H69Y", "S72P", "S97A", "V114I", "K124N", "V126I", "T129P", "T136N", "H141R", "F166S", "A193S", "I227V", "S235T", "Y294H", "A320S", "T335A", "I346L", "I359L", "V430M", "V514M", "F530L", "E560V", "K615R", "V670I", "C866W", "A1023T", "K1090R", "V1115I", "I1123V", "T1137A"], "Gc": ["V19I", "C215W", "A372T", "K439R", "V464I", "I472V", "T486A"], "Gn": ["L15V", "G48N", "E53G", "N65D", "H69Y", "S72P", "S97A", "V114I", "K124N", "V126I", "T129P", "T136N", "H141R", "F166S", "I185V", "A193S", "I227V", "Y294H", "A320S", "N334S", "I346L", "I359L", "V430M", "F530L", "E560V", "R614K", "K615R"]}, "labels": {"aa": "GPC: L15V, G48N, E53G, T54A, N65D, H69Y, S72P, S97A, V114I, K124N, V126I, T129P, T136N, H141R, F166S, A193S, I227V, S235T, Y294H, A320S, T335A, I346L, I359L, V430M, V514M, F530L, E560V, K615R, V670I, C866W, A1023T, K1090R, V1115I, I1123V, T1137A; Gc: V19I, C215W, A372T, K439R, V464I, I472V, T486A; Gn: L15V, G48N, E53G, N65D, H69Y, S72P, S97A, V114I, K124N, V126I, T129P, T136N, H141R, F166S, I185V, A193S, I227V, Y294H, A320S, N334S, I346L, I359L, V430M, F530L, E560V, R614K, K615R"}}}, {"name": "NODE_0000004", "node_attrs": {"div": 0.131878, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A37G", "A41G", "T46A", "A93T", "T159C", "A177T", "A183T", "T186A", "T213A", "C252T", "A255G", "G303A", "T351C", "T400G", "T414C", "G420A", "A426G", "A441G", "C462T", "A468G", "C477T", "C516T", "T534C", "T570A", "C591G", "G597T", "G604A", "A639G", "G651A", "G730A", "C755G", "T789C", "T807C", "T813C", "C816T", "A819T", "T825C", "A828T", "T834C", "T849C", "T855A", "C870T", "T873C", "A874C", "A885C", "T934C", "A952T", "A969G", "T975C", "C990T", "A996G", "A1038T", "A1041T", "C1042T", "A1062T", "C1086T", "A1110G", "T1125C", "T1131A", "A1137C", "A1143T", "T1155A", "A1173G", "A1185C", "T1200C", "T1203A", "T1245C", "C1251A", "T1254C", "G1293A", "A1296G", "T1359A", "T1404A", "A1413G", "A1431T", "C1461T", "C1476A", "A1482G", "G1488T", "A1524G", "C1542T", "T1563C", "A1569G", "T1572G", "T1582G", "C1584T", "T1585C", "C1668T", "G1671A", "A1725C", "A1734G", "A1740T", "A1746G", "A1764T", "C1809A", "A1823T", "T1825G", "A1836G", "G1839A", "T1851C", "A1890C", "T1899C", "A1920T", "T1935C", "T1962C", "C1966T", "A1971G", "A2007G", "A2028T", "T2049A", "A2055G", "A2058G", "T2077C", "A2079G", "A2094C", "C2109A", "C2118T", "A2124G", "A2145C", "G2151A", "T2247A", "T2262C", "C2277T", "T2286C", "A2340G", "C2355T", "T2388C", "C2391T", "T2394A", "C2409T", "A2421G", "C2451T", "T2454C", "A2487G", "G2496A", "C2526T", "T2530C", "A2532G", "T2538C", "A2541T", "G2547T", "T2562A", "G2565A", "A2628C", "C2635T", "G2640A", "T2673C", "T2682C", "A2685C", "T2697A", "T2703A", "T2775C", "G2781T", "C2790A", "A2826T", "C2859A", "A2862T", "T2889A", "A2913T", "T2937G", "C2961T", "A2991T", "A2994T", "A3021G", "C3028T", "T3030G", "T3036C", "G3054A", "T3063C", "C3066T", "A3108T", "A3111T", "C3138A", "T3147C", "G3150A", "A3183C", "T3201C", "T3207C", "T3222C", "C3237A", "A3261T", "C3264T", "T3279A", "T3378A", "G3390T", "A3402T", "A3420T", "C3421T", "C3423A", "T3429C", "C3435T", "A3445C", "A3447G", "A3459G", "T3517-", "G3529-", "-3536T", "C3546A", "A3552T", "T3553G", "T3554C", "A3563-", "C3626T"], "GPC": ["T104A", "S117A", "V185I", "I301L", "S334N", "F511V", "Y591F", "S592A", "K614R"], "Gn": ["A54T", "T104A", "S117A", "T235S", "I301L", "A335T", "F511V", "Y591F", "S592A"]}, "labels": {"aa": "GPC: T104A, S117A, V185I, I301L, S334N, F511V, Y591F, S592A, K614R; Gn: A54T, T104A, S117A, T235S, I301L, A335T, F511V, Y591F, S592A"}}, "children": [{"name": "PP_006W100|Lechiguanas|Argentina/2022-XX-XX", "node_attrs": {"div": 0.18738, "strain": {"value": "PP_006W100|Lechiguanas|Argentina/2022-XX-XX"}, "accession": "PP_006W100", "author": {"author": "Bellomo, C. M.; Alonso, D. O.; Martinez, V. P.; Sanchez Loria, J.; Campos, J.", "value": "Bellomo, C. M.; Alonso, D. O.; Martinez, V. P.; Sanchez Loria, J.; Campos, J."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2022-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-07-01"}, "PPX_accession": {"value": "PP_006W100.1", "url": "https://pathoplexus.org/seq/PP_006W100.1"}, "abbr_authors": {"value": "Bellomo et al."}, "INSDC_accession": {"value": "OR890440.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR890440.1"}, "institution": {"value": "INEI-ANLIS \"Dr C. G. Malbran\", Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "yellow pygmy rice rat"}, "length": {"value": 3653}}, "branch_attrs": {"mutations": {"nuc": ["T93C", "T94G", "C129T", "A132G", "T162C", "G189A", "C229T", "A231G", "T246C", "A279G", "A318C", "A339C", "A354G", "C375T", "G384A", "C393T", "C417T", "T429C", "G480A", "T489C", "G507A", "G528A", "T552C", "A576G", "G579A", "A603G", "C621T", "G628A", "C633T", "C637T", "G669A", "T693C", "T696C", "A710G", "T741C", "A750C", "A762G", "C807A", "T870G", "A876G", "T882C", "C921T", "C933T", "G939A", "G945A", "C975A", "T981C", "T987C", "A1020G", "T1041C", "A1065G", "T1074C", "A1095G", "C1101T", "G1122A", "T1146C", "A1161T", "A1167G", "A1179G", "C1194A", "C1212T", "T1239A", "C1257T", "T1284C", "G1311A", "G1317A", "C1320A", "T1326C", "T1344C", "C1386T", "G1395C", "C1416T", "G1437T", "A1470G", "A1476G", "T1488C", "T1500C", "A1509T", "C1527G", "C1530T", "C1548T", "C1549T", "A1590G", "G1591A", "A1611C", "T1635C", "C1645T", "A1686G", "C1692T", "C1707T", "G1719A", "A1728G", "C1732T", "A1749G", "C1755T", "A1767G", "T1827C", "T1833C", "T1860C", "A1866G", "A1869G", "G1875A", "A1881G", "A1884G", "G1888A", "T1908C", "A1926G", "C1929T", "T1947C", "T1951C", "T1956A", "A1972G", "A1974G", "A1989G", "T1998C", "A2025T", "T2037C", "T2052A", "T2091C", "C2095T", "C2131T", "C2133A", "C2172T", "A2184G", "T2223C", "T2331C", "T2346C", "T2361A", "G2364A", "T2373A", "T2382C", "T2403A", "T2412C", "G2436A", "A2439T", "T2463C", "A2469G", "G2499A", "A2577G", "T2580C", "T2586C", "T2589A", "C2604T", "A2616G", "T2625G", "A2632G", "T2634C", "A2637G", "T2658C", "G2670A", "T2712C", "A2727G", "A2748G", "T2751C", "A2796G", "T2823C", "T2826C", "T2841C", "C2850T", "A2877G", "T2907C", "T2916C", "T2923C", "G2925A", "T2949C", "T3042A", "T3045C", "A3096T", "T3108C", "T3111C", "A3114T", "A3126G", "A3162G", "T3180C", "T3186C", "T3192C", "A3219G", "T3228C", "A3240G", "A3336G", "T3339A", "T3390C", "T3414C", "A3423G", "C3438T", "A3481-", "T3491G", "A3501C", "-3517A", "A3521G", "T3523A", "-3529T", "C3530T", "C3532T", "T3533C", "T3536C", "-3537T", "T3540C", "T3549C", "-3559T", "-3563T", "T3571G", "-3580A", "A3645C"], "GPC": ["L15V", "A193T", "K220R", "K448N", "V514M", "V613I", "T641A", "I861V"], "Gc": ["I210V"], "Gn": ["L15V", "A193T", "K220R", "K448N", "V613I", "T641A"]}, "labels": {"aa": "GPC: L15V, A193T, K220R, K448N, V514M, V613I, T641A, I861V; Gc: I210V; Gn: L15V, A193T, K220R, K448N, V613I, T641A"}}}, {"name": "NODE_0000005", "node_attrs": {"div": 0.191258, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C111G", "A175G", "C180T", "T222C", "A231T", "C237T", "T249C", "A261T", "A267C", "A297G", "A315C", "A330T", "T340G", "A345G", "G360A", "A363T", "A372G", "C387T", "A405G", "T438G", "C442T", "C474T", "C510T", "T585C", "C601T", "T606A", "A609G", "C618T", "T660C", "T663A", "A675T", "A705T", "C717T", "A723T", "A855G", "T867C", "T909C", "A927G", "A936T", "G963A", "A993G", "G999A", "T1011A", "C1026T", "A1044G", "G1071A", "T1098C", "T1149C", "G1152A", "A1155G", "A1176G", "C1188T", "C1197T", "G1206A", "A1218G", "G1242A", "A1244G", "T1323C", "A1336C", "T1353C", "T1371C", "C1428T", "C1467T", "T1468C", "T1480C", "A1497G", "T1515A", "C1522T", "C1533T", "T1536C", "T1542A", "A1551G", "C1575T", "C1576T", "A1578G", "G1593A", "T1602C", "T1641C", "G1650A", "T1656C", "A1659G", "G1674A", "C1752T", "T1758A", "C1770T", "C1779T", "A1809G", "C1830T", "T1837C", "A1839T", "A1878G", "C1911T", "T1912C", "T1983C", "T2010C", "A2013C", "C2014T", "G2019A", "G2022A", "T2028C", "A2049G", "C2083T", "T2088C", "T2100A", "A2127G", "T2136C", "T2208C", "G2250A", "T2253A", "A2274C", "G2334A", "C2352A", "T2358C", "T2367C", "A2424G", "T2430A", "T2442C", "A2475G", "C2481T", "C2485T", "A2490T", "C2505T", "G2508A", "T2529C", "A2562G", "T2568G", "T2607C", "A2613G", "A2631T", "A2691G", "A2703G", "T2742C", "A2754T", "T2784C", "C2787T", "T2799C", "A2802G", "C2814T", "C2829T", "G2844T", "C2868T", "T2883C", "C2886T", "T2895C", "A2902C", "G2904A", "T2913C", "G2946A", "C2950T", "G2964T", "G2988A", "A3003T", "C3033T", "G3060A", "T3093A", "T3141C", "T3153G", "G3168A", "A3189G", "T3195C", "T3210C", "G3270A", "T3273C", "T3276C", "T3303C", "T3309A", "G3342A", "T3351C", "C3352T", "A3354G", "T3361C", "A3363C", "T3366C", "T3369C", "C3408T", "T3411C", "G3444A", "C3453T", "-3478T", "-3480T", "-3483T", "-3486T", "-3487G", "-3488C", "C3502A", "T3505G", "C3506T", "G3509A", "C3510G", "A3511C", "T3512C", "A3515-", "T3516-", "A3518-", "A3519-", "T3524A", "G3526C", "T3528-", "-3537G", "T3538C", "A3539T", "T3541A", "A3542T", "G3545A", "A3547T", "T3549-", "A3560-", "C3561-", "T3562-", "T3564-", "A3565-", "-3575T", "-3576A", "-3577C", "-3578T", "-3579G", "-3580T", "C3582T", "-3583A", "-3584A", "-3585C"], "GPC": ["I42V", "E88D", "S97A", "N398S"], "Gn": ["I42V", "E88D", "S97A", "N398S", "M514V"]}, "labels": {"aa": "GPC: I42V, E88D, S97A, N398S; Gn: I42V, E88D, S97A, N398S, M514V"}}, "children": [{"name": "PP_006VLSY|Of22819|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207251, "strain": {"value": "PP_006VLSY|Of22819|nan/XXXX-XX-XX"}, "accession": "PP_006VLSY", "author": {"author": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C.", "value": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "1997-12-01"}, "PPX_accession": {"value": "PP_006VLSY.1", "url": "https://pathoplexus.org/seq/PP_006VLSY.1"}, "abbr_authors": {"value": "Calderon et al."}, "INSDC_accession": {"value": "AF028022.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF028022.1"}, "institution": {"value": "University of Nevada, Microbiology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "host": {"value": "yellow pygmy rice rat"}, "length": {"value": 3653}}, "branch_attrs": {"mutations": {"nuc": ["T169A", "A170T", "T171A", "T273C", "C282T", "G306A", "T312C", "C393T", "T447C", "A551T", "T561C", "A594G", "C621T", "A651G", "A744G", "G783A", "C813T", "G844A", "G864A", "G872C", "T1074C", "T1109C", "T1299C", "A1314G", "C1362T", "G1395A", "T1422C", "A1542G", "C1732T", "T1860C", "C1962T", "G1968A", "C2077T", "G2079A", "G2130A", "C2133T", "C2213A", "A2214C", "T2265C", "C2286T", "A2301G", "G2325A", "G2421A", "C2604T", "T2712C", "A2757G", "A2853T", "C2976T", "G3118C", "C3119A", "T3129A", "A3279G", "C3372T", "C3438T", "-3479G", "-3482T", "G3487A", "A3489T", "T3491A", "-3492A", "-3493G", "-3494C", "-3495A", "-3496T", "-3497T", "T3520-"], "GPC": ["Y40I", "N167I", "E265K", "S274T", "V353A", "T721N", "A1023H"], "Gc": ["T70N", "A372H"], "Gn": ["Y40I", "N167I", "E265K", "S274T", "V353A"]}, "labels": {"aa": "GPC: Y40I, N167I, E265K, S274T, V353A, T721N, A1023H; Gc: T70N, A372H; Gn: Y40I, N167I, E265K, S274T, V353A"}}}, {"name": "NODE_0000006", "node_attrs": {"div": 0.195154, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A225G", "T321G", "G564A", "A822G", "A1056G", "T1920C", "G2217A", "T2259C", "T2361G", "T2511C", "-3484C", "-3485A"]}}, "children": [{"name": "PP_006W27K|ER19-SP1693|Argentina/2019-XX-XX", "node_attrs": {"div": 0.208814, "strain": {"value": "PP_006W27K|ER19-SP1693|Argentina/2019-XX-XX"}, "accession": "PP_006W27K", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2019-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W27K.1", "url": "https://pathoplexus.org/seq/PP_006W27K.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Entre Rios"}, "INSDC_accession": {"value": "OR987856.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987856.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3632}}, "branch_attrs": {"mutations": {"nuc": ["A81G", "C129T", "A165G", "T183G", "A305G", "T456G", "T493C", "T552C", "G579A", "A678G", "C681T", "T699C", "T727C", "T936C", "C975T", "T1032A", "T1053C", "G1122A", "T1204C", "T1248C", "A1515G", "G1551A", "G1569A", "C1641T", "G1746A", "G1788C", "C1810T", "C2163T", "A2394G", "A2430G", "C2530T", "T2596C", "A2632G", "C2673T", "A2853G", "G3021A", "A3054G", "A3060G", "A3096G", "T3111C", "T3261C", "C3276A", "G3456A", "T3470C", "A3471T", "-3479T", "-3482C", "T3486A", "A3503G", "C3511-", "C3512-", "T3513-", "T3514-", "-3515C", "-3516C", "-3517T", "-3518C", "-3519A", "A3521-", "T3522-", "C3532T", "C3554T"], "GPC": ["K85R", "M579I", "I861V", "D1075E"], "Gc": ["I210V", "D424E"], "Gn": ["K85R", "M579I"]}, "labels": {"aa": "GPC: K85R, M579I, I861V, D1075E; Gc: I210V, D424E; Gn: K85R, M579I"}}}, {"name": "NODE_0000007", "node_attrs": {"div": 0.199196, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G168T", "T183C", "C249T", "T252C", "A366G", "T378C", "A786G", "A1065G", "A1179G", "T1284C", "G1482A", "C1725T", "A2085G", "C2742T", "C3369T", "C3526T"]}}, "children": [{"name": "PP_006W1SF|BA18-LD1633|Argentina/2018-XX-XX", "node_attrs": {"div": 0.205705, "strain": {"value": "PP_006W1SF|BA18-LD1633|Argentina/2018-XX-XX"}, "accession": "PP_006W1SF", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2018-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1SF.1", "url": "https://pathoplexus.org/seq/PP_006W1SF.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "PP151164.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151164.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3613}}, "branch_attrs": {"mutations": {"nuc": ["A204C", "T285C", "C351T", "C362T", "C375T", "T684C", "A1071G", "A1084G", "T1150C", "C1185T", "T1197C", "T1215C", "G1794A", "A1872C", "A1926G", "C1983T", "A2100G", "A2394G", "T2517C", "G2562A", "T2580C", "C2673T", "C2913T", "T3472G", "-3473T", "-3474C", "A3475-", "C3476-", "C3477-", "T3478-", "T3480-", "A3481-", "T3483-", "C3488T", "-3492T", "-3493A", "-3494C", "-3495T", "-3496C", "-3497A", "T3498A", "T3500-", "A3501-", "A3502C", "G3505T", "A3509G", "G3510A", "C3511A", "C3512T", "T3513G", "-3515C", "-3516C", "-3517T"], "GPC": ["A104V", "I345V"], "Gn": ["A104V", "I345V"]}, "labels": {"aa": "GPC: A104V, I345V; Gn: A104V, I345V"}}}, {"name": "PP_006W1RH|BA18-RR1620|Argentina/2018-XX-XX", "node_attrs": {"div": 0.207544, "strain": {"value": "PP_006W1RH|BA18-RR1620|Argentina/2018-XX-XX"}, "accession": "PP_006W1RH", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2018-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1RH.1", "url": "https://pathoplexus.org/seq/PP_006W1RH.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "PP151163.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP151163.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3628}}, "branch_attrs": {"mutations": {"nuc": ["A204G", "G345A", "G396A", "G669A", "T696C", "C781T", "T870C", "A1203G", "C1257T", "A1546G", "A1863G", "A2120T", "C2172T", "G2364A", "G2421A", "A2469G", "C2592T", "G2601A", "G2613A", "T2769C", "T2874C", "C2913A", "A3138G", "A3240G", "C3282T", "T3306C", "C3351T", "C3429T", "-3479T", "-3482C", "T3486A", "A3503G", "T3520-"], "GPC": ["I499V", "Y690F"], "Gc": ["Y39F"], "Gn": ["I499V"]}, "labels": {"aa": "GPC: I499V, Y690F; Gc: Y39F; Gn: I499V"}}}]}]}]}]}]}]}, {"name": "NODE_0000008", "node_attrs": {"div": 0.105017, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A28G", "A39G", "C111T", "T120C", "A131G", "A132G", "A156C", "C157T", "A159G", "C180G", "T192C", "T196C", "A204G", "A219G", "A225G", "C243T", "A264C", "A297G", "G309A", "A315T", "T355G", "G361A", "C363T", "A366G", "T369A", "C387A", "A393G", "T394C", "T408C", "T414C", "G427A", "T438A", "A441T", "C454T", "G456A", "C462T", "T465C", "C474T", "G480A", "T504A", "G507A", "A508G", "T509C", "A510T", "T534C", "G554A", "C555T", "A576G", "C582T", "C621T", "C624T", "A642T", "T645C", "T654A", "T657C", "T663C", "C671T", "A672G", "C679T", "T693C", "A705T", "G711A", "C717T", "C721T", "A723G", "A726G", "G730A", "A744G", "G747A", "T753C", "C755G", "A774G", "T789G", "T801C", "T804C", "A810T", "C816T", "C826T", "A828G", "A837G", "T840C", "C841T", "A861T", "A894G", "G900A", "C903T", "A927G", "T930A", "A932T", "G945T", "A948C", "T975C", "C978T", "C1005A", "T1017C", "A1044G", "G1050A", "A1052C", "C1059T", "A1065G", "T1067A", "G1071A", "A1080T", "A1095G", "T1098C", "C1101T", "G1108A", "T1109C", "A1110C", "T1116C", "C1134T", "T1150C", "T1155C", "C1158T", "T1159G", "A1179C", "A1182T", "C1257T", "A1260T", "T1263C", "C1266A", "A1269T", "A1272T", "T1290G", "T1299C", "A1302G", "T1305C", "T1326C", "C1329T", "C1332T", "A1338G", "C1362T", "T1399C", "A1401G", "T1404A", "T1407A", "T1422C", "C1476T", "C1494T", "C1533T", "C1542A", "A1566C", "G1591A", "T1602C", "C1608T", "T1620C", "T1635C", "C1645T", "A1659G", "G1671A", "A1686C", "C1732T", "A1740C", "T1758C", "A1764G", "T1776C", "C1779T", "T1791A", "T1824C", "C1830T", "G1839A", "T1851C", "A1880G", "A1890C", "G1892A", "C1905T", "A1917G", "C1950G", "T1951C", "T1956G", "G1968C", "A2007G", "G2019T", "T2052A", "A2058G", "A2079G", "A2085G", "A2097T", "T2100A", "C2109T", "T2121C", "C2133T", "T2136C", "T2148C", "A2154G", "C2166T", "C2169T", "A2193G", "T2241C", "G2250A", "A2274C", "A2283G", "A2295G", "G2310A", "A2322G", "A2343T", "T2346C", "C2352T", "T2367C", "C2370T", "T2388C", "A2397T", "C2409T", "C2410T", "T2412A", "A2418G", "A2421C", "T2455C", "A2457G", "A2475T", "A2490T", "G2508A", "T2538A", "G2560A", "T2562A", "G2565A", "T2571C", "T2574A", "A2577G", "T2580C", "C2592T", "T2595C", "G2610C", "A2613T", "T2625G", "A2632G", "T2634A", "A2655T", "T2658A", "T2703A", "T2712C", "T2715C", "A2727G", "C2748A", "T2757A", "A2766T", "T2784C", "C2787A", "T2793A", "A2835T", "T2838C", "A2850T", "C2859T", "G2871A", "T2898C", "C2917T", "T2919A", "C2964A", "C2976T", "T2977C", "G2979A", "T2982C", "A2991T", "G3000A", "C3028T", "T3030A", "C3033T", "T3042C", "T3045A", "A3048G", "A3051T", "G3060T", "C3091A", "T3093G", "T3105C", "A3114T", "T3117C", "G3118T", "C3123T", "T3156A", "T3177G", "T3186C", "A3189G", "T3204A", "T3207C", "T3213A", "T3228G", "C3237A", "C3244T", "T3246A", "A3261G", "C3264T", "C3288A", "T3309A", "T3318C", "T3351C", "T3354C", "G3357A", "A3400G", "A3402T", "C3433T", "C3435A", "A3450G", "A3459G", "-3474G", "C3476-", "C3477-", "A3481-", "A3501T", "T3505C", "T3522A", "T3524A", "G3526A", "-3536C", "-3537C", "T3538A", "T3540C", "A3547-", "T3554G", "A3556C", "T3562A", "A3563C", "T3566-", "-3575T", "-3578A", "-3580T", "C3582T", "-3583A", "-3584A", "-3585C", "T3590A", "T3606C", "C3617T", "A3621T", "C3626T"], "GPC": ["K27R", "V126I", "I153A", "S168N", "T207M", "Y294F", "Q315K", "S334A", "F339Y", "I353T", "S370A", "V514M", "K610R", "V837I", "I861V", "L1014M", "I1117V"], "Gc": ["V186I", "I210V", "E282D", "L363M", "A372S", "I466V"], "Gn": ["K27R", "A54T", "E88D", "S102A", "V126I", "I153A", "S168N", "I185V", "T207M", "T235S", "Y294F", "N334A", "A335T", "F339Y", "V353T", "S370A", "K610R", "R614K"]}, "labels": {"aa": "GPC: K27R, V126I, I153A, S168N, T207M, Y294F, Q315K, S334A, F339Y, I353T, S370A, V514M, K610R, V837I, I861V, L1014M, I1117V; Gc: V186I, I210V, E282D, L363M, A372S, I466V; Gn: K27R, A54T, E88D, S102A, V126I, I153A, S168N, I185V, T207M, T235S, Y294F, N334A, A335T, F339Y, V353T, S370A, K610R, R614K"}}, "children": [{"name": "PP_006VLTW|Hu39694|nan/XXXX-XX-XX", "node_attrs": {"div": 0.124353, "strain": {"value": "PP_006VLTW|Hu39694|nan/XXXX-XX-XX"}, "accession": "PP_006VLTW", "author": {"author": "Levis, S.; Morzunov, S. P.; Rowe, J. E.; Enria, D.; Pini, N.; Calderon, G.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C.", "value": "Levis, S.; Morzunov, S. P.; Rowe, J. E.; Enria, D.; Pini, N.; Calderon, G.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "1997-12-01"}, "PPX_accession": {"value": "PP_006VLTW.1", "url": "https://pathoplexus.org/seq/PP_006VLTW.1"}, "abbr_authors": {"value": "Levis et al."}, "INSDC_accession": {"value": "AF028023.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF028023.1"}, "institution": {"value": "University of Nevada, Microbiology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3654}}, "branch_attrs": {"mutations": {"nuc": ["A113G", "C215T", "G330A", "A387G", "T441C", "G508T", "T549C", "C633T", "T684A", "T727C", "T768C", "T810C", "T849C", "C860T", "G864A", "T867G", "G868T", "G883A", "C993T", "T1053C", "A1071C", "T1080C", "C1086A", "G1152T", "C1188T", "A1243C", "A1282C", "G1290A", "T1353A", "G1383A", "C1386T", "T1387C", "A1396G", "C1397A", "T1473C", "A1497G", "G1647A", "T1761C", "A1815G", "A1926G", "G1938A", "T1986C", "G2130A", "T2133G", "C2172T", "T2292C", "T2319C", "G2377T", "A2385G", "C2421T", "G2460A", "G2632C", "G2736A", "A2748G", "T2775C", "T2904C", "G3175-", "G3270A", "T3294C", "G3396A", "G3428A", "T3500C", "C3546-", "T3558C"], "GPC": ["K21R", "A55V", "A153S", "A270V", "V273F", "V278I", "A311T", "A334T", "N398H", "N411H", "T449D", "V776F", "V861L", "G1042-", "S1126N"], "Gc": ["V125F", "V210L", "G391-", "S475N"], "Gn": ["K21R", "A55V", "A153S", "A270V", "V273F", "V278I", "A311T", "A334T", "N398H", "N411H", "T449D"]}, "labels": {"aa": "GPC: K21R, A55V, A153S, A270V, V273F, V278I, A311T, A334T, N398H, N411H, T449D, V776F, V861L, G1042-, S1126N; Gc: V125F, V210L, G391-, S475N; Gn: K21R, A55V, A153S, A270V, V273F, V278I, A311T, A334T, N398H, N411H, T449D"}}}, {"name": "NODE_0000009", "node_attrs": {"div": 0.115148, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C282T", "T285C", "C516T", "G579A", "C852T", "A982G", "T987C", "C1029T", "A1051G", "T1134G", "A1191G", "C1212G", "G1242A", "T1359C", "C1530T", "A1561G", "T1563A", "C1576T", "A1731G", "T1923C", "G1953T", "A1980G", "A2040G", "T2139C", "G2178A", "A2190G", "T2223C", "T2262C", "T2394A", "A2532G", "T2667C", "C2886T", "T2907C", "C3442A", "-3547T", "C3548-", "C3550A"], "GPC": ["I504V"], "Gn": ["I504V"]}, "labels": {"aa": "GPC: I504V; Gn: I504V"}}, "children": [{"name": "NODE_0000010", "node_attrs": {"div": 0.128767, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T94A", "C202T", "T273C", "T315C", "A327G", "A486G", "T582C", "T642A", "T696C", "G729A", "A786G", "T909C", "C937A", "C1040T", "C1042T", "A1173G", "T1182A", "C1299T", "G1590A", "C1704T", "C1707T", "G1713A", "A1803G", "A1863G", "T1969C", "T1983C", "A2034G", "T2037C", "A2070G", "G2406C", "T2586C", "T2766C", "A2922G", "T2923C", "G2925A", "T2934C", "T2937G", "T2943C", "T3123C", "T3210C", "T3222C", "C3351T", "C3372T", "T3411C", "T3517C", "A3525G", "T3553G", "G3554T", "C3556T"], "GPC": ["L15M", "P51S", "T330I"], "Gn": ["L15M", "P51S", "T330I"]}, "labels": {"aa": "GPC: L15M, P51S, T330I; Gn: L15M, P51S, T330I"}}, "children": [{"name": "PP_006W1MR|BA10-GJ1165|Argentina/2010-XX-XX", "node_attrs": {"div": 0.128768, "strain": {"value": "PP_006W1MR|BA10-GJ1165|Argentina/2010-XX-XX"}, "accession": "PP_006W1MR", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2010-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1MR.1", "url": "https://pathoplexus.org/seq/PP_006W1MR.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR987854.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987854.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3556}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W1NP|BA10-OE1169|Argentina/2010-XX-XX", "node_attrs": {"div": 0.128768, "strain": {"value": "PP_006W1NP|BA10-OE1169|Argentina/2010-XX-XX"}, "accession": "PP_006W1NP", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2010-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1NP.1", "url": "https://pathoplexus.org/seq/PP_006W1NP.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR987855.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987855.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3556}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000011", "node_attrs": {"div": 0.123539, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T123C", "C192T", "G219A", "A261G", "A291G", "G303A", "T462C", "C465T", "C534T", "C660T", "G789T", "C801T", "T807G", "T888C", "C1179T", "T1233C", "T1356C", "A1404G", "T1455C", "C1824T", "A2043C", "A2499G", "A2560G", "C2610T", "C2733T", "C2961T", "T3033C", "G3132A", "A3246G", "T3470C", "T3592C"], "GPC": ["I837V"], "Gc": ["I186V"]}, "labels": {"aa": "GPC: I837V; Gc: I186V"}}, "children": [{"name": "NODE_0000012", "node_attrs": {"div": 0.12669, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C324T", "G966T", "G1647A", "A1869G", "G1938A", "A2796C", "A2919G", "T2943C", "C3105T", "G3390T", "T3429C", "A3522G", "T3582-", "A3583T", "C3585A"]}}, "children": [{"name": "PP_006W1G2|BA02_SMM484|Argentina/2002-XX-XX", "node_attrs": {"div": 0.126691, "strain": {"value": "PP_006W1G2|BA02_SMM484|Argentina/2002-XX-XX"}, "accession": "PP_006W1G2", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-16"}, "PPX_accession": {"value": "PP_006W1G2.1", "url": "https://pathoplexus.org/seq/PP_006W1G2.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR965908.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR965908.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3622}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0UC|Arg-h484|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.126691, "strain": {"value": "PP_006W0UC|Arg-h484|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0UC", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "PPX_accession": {"value": "PP_006W0UC.1", "url": "https://pathoplexus.org/seq/PP_006W0UC.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555731.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555731.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3622}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000013", "node_attrs": {"div": 0.124042, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A2863G"], "GPC": ["T938A"], "Gc": ["T287A"]}, "labels": {"aa": "GPC: T938A; Gc: T287A"}}, "children": [{"name": "NODE_0000014", "node_attrs": {"div": 0.125165, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T429C", "T1530C", "T2166C", "-3492T", "-3493A", "-3494T", "-3495T", "-3496C", "-3497A", "T3501A", "C3505T", "C3506T", "G3509-", "C3510-", "A3511-", "T3512-", "T3513-", "T3514-", "A3515-", "T3516-"]}}, "children": [{"name": "PP_006W1UB|BA11-MH1249|Argentina/2011-XX-XX", "node_attrs": {"div": 0.128953, "strain": {"value": "PP_006W1UB|BA11-MH1249|Argentina/2011-XX-XX"}, "accession": "PP_006W1UB", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2011-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1UB.1", "url": "https://pathoplexus.org/seq/PP_006W1UB.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "PP003839.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP003839.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3501}}, "branch_attrs": {"mutations": {"nuc": ["C2115T", "A2124G", "C2391T", "T2586A", "C2667T", "A2988G", "T3046C", "G3147A", "C3186T", "C3192T", "G3246A", "T3582-", "A3583T", "C3585A"]}}}, {"name": "PP_006W1TD|BA17_SD1583|Argentina/2017-XX-XX", "node_attrs": {"div": 0.129896, "strain": {"value": "PP_006W1TD|BA17_SD1583|Argentina/2017-XX-XX"}, "accession": "PP_006W1TD", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2017-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1TD.1", "url": "https://pathoplexus.org/seq/PP_006W1TD.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "PP003838.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP003838.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3561}}, "branch_attrs": {"mutations": {"nuc": ["G153A", "C324T", "A522T", "G528A", "T621C", "C663T", "C948T", "C1042T", "C1128T", "G1380A", "G1453A", "T1495C", "T1521C", "A2698G", "C3105T"], "GPC": ["D468N", "S883G"], "Gc": ["S232G"], "Gn": ["D468N"]}, "labels": {"aa": "GPC: D468N, S883G; Gc: S232G; Gn: D468N"}}}]}, {"name": "NODE_0000015", "node_attrs": {"div": 0.124888, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C781T", "G1950C", "A3162G"]}}, "children": [{"name": "PP_006W1LT|BA16_LJC1557|Argentina/2016-XX-XX", "node_attrs": {"div": 0.129496, "strain": {"value": "PP_006W1LT|BA16_LJC1557|Argentina/2016-XX-XX"}, "accession": "PP_006W1LT", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez- Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez- Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2016-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W1LT.1", "url": "https://pathoplexus.org/seq/PP_006W1LT.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR987853.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987853.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3624}}, "branch_attrs": {"mutations": {"nuc": ["C618T", "C637T", "G837A", "C921T", "C1155T", "G1167A", "T1248C", "C1356T", "C2262T", "G2283A", "C2605T", "C2667T", "T2850C", "G3048A", "G3246A", "C3324T"]}}}, {"name": "NODE_0000016", "node_attrs": {"div": 0.127571, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G651A", "T909C", "T1149C", "C1704T", "G1965A", "C2391T", "C2715T", "G2736A", "T2892C"]}}, "children": [{"name": "NODE_0000017", "node_attrs": {"div": 0.130743, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G291A", "G330A", "A480G", "G495A", "G1191A", "G1354A", "A1914G", "C2083T", "G2406A", "G2518A", "C2667T"], "GPC": ["V435I", "A823T"], "Gc": ["A172T"], "Gn": ["V435I"]}, "labels": {"aa": "GPC: V435I, A823T; Gc: A172T; Gn: V435I"}}, "children": [{"name": "PP_006W24R|BA02_AOA490|Argentina/2002-XX-XX", "node_attrs": {"div": 0.130745, "strain": {"value": "PP_006W24R|BA02_AOA490|Argentina/2002-XX-XX"}, "accession": "PP_006W24R", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W24R.1", "url": "https://pathoplexus.org/seq/PP_006W24R.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR987851.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987851.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3616}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000018", "node_attrs": {"div": 0.130746, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W25P|BA02_ROM495|Argentina/2002-XX-XX", "node_attrs": {"div": 0.131036, "strain": {"value": "PP_006W25P|BA02_ROM495|Argentina/2002-XX-XX"}, "accession": "PP_006W25P", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W25P.1", "url": "https://pathoplexus.org/seq/PP_006W25P.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR987852.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987852.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3610}}, "branch_attrs": {"mutations": {"nuc": ["A17C", "G22A", "A23C", "A24T", "C26A", "G28A", "A30G", "C32A", "G34T", "A36T", "A37T", "A38G", "G39A", "T42G", "T43G", "T45-", "T46-", "G47-", "A48-", "A49-", "A50-", "G51-", "A52-", "T1605C"]}}}, {"name": "PP_006W23T|BA02_RJF487|Argentina/2002-XX-XX", "node_attrs": {"div": 0.130748, "strain": {"value": "PP_006W23T|BA02_RJF487|Argentina/2002-XX-XX"}, "accession": "PP_006W23T", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-14"}, "PPX_accession": {"value": "PP_006W23T.1", "url": "https://pathoplexus.org/seq/PP_006W23T.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR987850.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR987850.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3492}}, "branch_attrs": {"mutations": {"nuc": ["T3547-", "T3549-", "A3550-", "T3551-", "A3552-", "T3553-", "G3554-", "T3555-", "C3556-", "T3557-", "T3558-", "A3559-", "A3560-", "C3561-", "A3562-", "C3563T", "-3566T", "A3568T", "C3569G", "T3570-", "T3571-", "A3573C", "C3577A", "G3579A", "T3580C", "T3582C", "A3583T", "C3585A", "C3586A", "A3590T", "C3592T"]}}}]}]}, {"name": "NODE_0000019", "node_attrs": {"div": 0.129392, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G204A", "C804T", "C1042T", "A1524G", "C2466T", "A2979G", "C3540T"]}}, "children": [{"name": "PP_006W1JX|BA02_VVD480|Argentina/2002-XX-XX", "node_attrs": {"div": 0.129685, "strain": {"value": "PP_006W1JX|BA02_VVD480|Argentina/2002-XX-XX"}, "accession": "PP_006W1JX", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-16"}, "PPX_accession": {"value": "PP_006W1JX.1", "url": "https://pathoplexus.org/seq/PP_006W1JX.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR965910.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR965910.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3628}}, "branch_attrs": {"mutations": {"nuc": ["T798C"]}}}, {"name": "NODE_0000020", "node_attrs": {"div": 0.129395, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W1HZ|BA02_VVN481|Argentina/2002-XX-XX", "node_attrs": {"div": 0.129397, "strain": {"value": "PP_006W1HZ|BA02_VVN481|Argentina/2002-XX-XX"}, "accession": "PP_006W1HZ", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-16"}, "PPX_accession": {"value": "PP_006W1HZ.1", "url": "https://pathoplexus.org/seq/PP_006W1HZ.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR965909.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR965909.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3545}}, "branch_attrs": {"mutations": {"nuc": ["G28A", "A30G", "C32A", "G34T", "A36T", "A37T", "A38G", "G39A", "T42G", "T43G", "T45-", "T46-", "G47-", "A48-", "A49-", "A50-", "G51-", "A52-"]}}}, {"name": "PP_006W1KV|BA02_VO483|Argentina/2002-XX-XX", "node_attrs": {"div": 0.129397, "strain": {"value": "PP_006W1KV|BA02_VO483|Argentina/2002-XX-XX"}, "accession": "PP_006W1KV", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2002-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-16"}, "PPX_accession": {"value": "PP_006W1KV.1", "url": "https://pathoplexus.org/seq/PP_006W1KV.1"}, "abbr_authors": {"value": "Alonso et al."}, "division": {"value": "Buenos Aires"}, "INSDC_accession": {"value": "OR965911.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR965911.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3634}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000021", "node_attrs": {"div": 0.0437024, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T45A", "G51A", "A70G", "T192G", "A211G", "A231T", "C252T", "G303A", "A345C", "T400C", "C402T", "T429A", "C459A", "A468G", "T552A", "G597T", "A600G", "A603G", "C618T", "T627A", "A639G", "A672T", "A681G", "C690T", "C717A", "T807A", "T855A", "A861T", "C921T", "C937A", "A951T", "A954C", "A970T", "G971C", "C1026T", "T1032C", "G1047T", "A1054G", "A1077T", "T1125A", "C1132A", "T1146C", "T1149C", "C1164T", "A1179G", "C1212A", "A1218T", "T1224C", "C1281A", "T1341A", "T1365C", "G1380A", "C1386A", "C1416T", "T1425A", "C1440T", "T1464C", "T1468C", "G1479A", "A1509C", "C1549T", "G1570A", "T1585C", "C1595T", "A1644C", "G1650A", "G1665A", "T1692A", "A1699G", "A1745G", "C1752T", "C1785A", "A1812G", "T1827C", "T1860A", "A1869G", "A1887G", "C1906A", "T1908A", "G1932A", "G1938A", "T1947G", "G1965A", "G1987A", "A1989T", "T1998A", "T2076C", "C2115T", "A2124G", "T2142A", "A2160T", "T2175C", "G2187A", "A2212C", "T2304A", "T2331C", "A2382G", "G2460A", "G2583A", "T2625G", "T2649C", "T2652A", "T2673C", "A2691C", "A2709G", "T2715A", "T2721C", "T2841C", "T2847A", "T2889A", "A2922C", "G2925A", "T2973A", "C3033A", "T3042C", "A3096T", "T3120A", "T3124C", "C3126T", "C3138T", "G3150A", "G3270A", "T3273C", "C3279A", "T3303A", "T3306A", "T3339A", "C3372T", "G3396T", "C3423A", "C3442A", "T3470C", "-3478T", "-3482A", "-3483T", "-3485C", "-3488C", "-3494A", "-3495T", "-3536G", "G3545A", "C3546A", "A3559G", "T3570A", "-3575T", "-3583T", "-3584A", "A3591C"], "GPC": ["T54A", "E206D", "D222E", "S334N", "T335A", "L361I", "V507I", "A515L", "I550V", "K565R", "D933E", "S1023A"], "Gn": ["I7V", "S117P", "D222E", "L361I", "V507I", "A515L", "I550V", "K565R", "V646I"]}, "labels": {"aa": "GPC: T54A, E206D, D222E, S334N, T335A, L361I, V507I, A515L, I550V, K565R, D933E, S1023A; Gn: I7V, S117P, D222E, L361I, V507I, A515L, I550V, K565R, V646I"}}, "children": [{"name": "PP_006W1Z1|13796_M|Argentina|1990|Argentina/1990-XX-XX", "node_attrs": {"div": 0.187394, "strain": {"value": "PP_006W1Z1|13796_M|Argentina|1990|Argentina/1990-XX-XX"}, "accession": "PP_006W1Z1", "author": {"author": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J.", "value": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "1990-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-04-30"}, "PPX_accession": {"value": "PP_006W1Z1.1", "url": "https://pathoplexus.org/seq/PP_006W1Z1.1"}, "abbr_authors": {"value": "Shedroff et al."}, "INSDC_accession": {"value": "PP058741.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP058741.1"}, "institution": {"value": "Centers for Disease Control and Prevention, Viral Special Pathogens Branch"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "mice and others"}, "length": {"value": 3696}}, "branch_attrs": {"mutations": {"nuc": ["A2G", "C32T", "A37G", "A41C", "G47A", "A81G", "C87T", "G102T", "A105T", "C111A", "A113G", "C127T", "C129G", "C141T", "G144T", "G153T", "A156G", "C157T", "T162A", "T168A", "A175G", "C180T", "A183T", "T186C", "A189C", "A199G", "C202A", "A204T", "A205G", "T207C", "A209G", "C215T", "A216T", "T217G", "T222C", "T223C", "A259C", "A261C", "A262C", "C263T", "T267C", "A291G", "T294G", "A315G", "T321G", "C345T", "A348G", "C362T", "C363A", "A366G", "C387A", "A393C", "G396A", "A399T", "A405G", "C406T", "T408A", "T418C", "G420A", "G423A", "A425G", "A426G", "A441G", "C442T", "C444T", "T453C", "T465C", "C489G", "T490C", "C493T", "G495A", "A501G", "G507C", "A522T", "A526C", "G528C", "C555T", "G558A", "A559G", "G564A", "C591T", "A594G", "T597C", "G609A", "T612A", "T645C", "T646A", "C656T", "T663A", "C671T", "T696C", "A700G", "C701T", "A702T", "G711A", "C721A", "A723G", "T727C", "C755G", "T756C", "C765G", "A780T", "G783T", "T789C", "T790C", "T795C", "T801C", "T804C", "T825A", "T834G", "C841T", "C852T", "C853A", "A871G", "T873G", "A874C", "G875A", "A876C", "A885C", "A892C", "A894T", "C903T", "T915C", "T922G", "T930G", "C933T", "A942T", "A948T", "A952G", "C954T", "A955G", "A960T", "G966A", "A982G", "T987A", "A994C", "A996G", "C1001T", "C1005T", "A1035G", "A1065G", "T1068C", "T1077C", "A1080T", "G1083A", "C1104T", "T1109A", "T1116C", "G1122A", "A1173G", "C1197T", "T1200C", "T1203C", "G1206A", "T1218C", "C1233A", "T1239A", "T1248C", "C1251T", "C1257T", "C1266A", "A1269C", "A1281G", "C1284T", "T1290A", "A1296G", "A1300C", "A1302T", "G1317A", "T1323C", "C1329A", "G1335A", "A1341G", "C1353G", "G1354A", "T1356C", "T1368C", "C1392A", "T1399C", "A1401T", "C1428T", "C1434T", "C1435T", "A1443T", "T1444C", "G1446A", "C1461A", "A1467G", "T1480C", "T1495C", "A1503T", "C1509T", "C1515T", "A1516C", "C1519T", "T1521G", "A1524T", "C1526T", "C1530T", "A1557G", "G1558A", "A1569G", "C1575T", "T1582A", "T1592C", "G1593A", "A1622G", "T1635C", "T1641A", "G1647A", "T1656A", "G1674A", "A1683C", "T1695C", "T1710G", "G1713A", "A1725T", "A1731G", "A1749G", "C1755T", "A1756C", "A1764G", "T1773A", "C1779T", "T1791A", "C1809T", "T1821C", "C1830T", "T1833C", "A1836G", "G1839A", "A1842T", "G1843A", "G1844A", "C1845T", "A1848G", "C1873T", "A1895G", "A1917T", "A1920G", "G1953A", "T1956C", "G1963A", "T1969C", "A1974C", "G1976T", "C1981T", "T1983G", "T1986C", "C1997T", "A1998G", "T2010C", "A2013T", "G2019T", "G2022A", "T2023G", "A2025T", "A2040T", "G2059C", "A2073T", "G2082A", "A2085G", "A2094C", "T2100A", "T2112A", "G2130A", "C2131T", "C2133A", "A2142G", "G2151A", "A2154G", "C2166A", "C2169T", "G2178A", "G2191A", "A2193C", "C2212T", "G2220A", "A2235G", "A2236G", "C2237T", "A2238G", "T2239C", "T2241A", "T2247C", "C2273A", "C2278A", "T2289C", "T2292C", "G2310A", "C2316T", "C2342A", "A2343T", "T2361A", "C2370T", "T2400C", "T2403G", "G2404A", "G2406A", "T2415C", "A2418G", "C2419T", "A2421G", "T2442C", "G2445A", "C2448A", "T2454C", "G2472A", "C2478T", "A2479G", "A2490G", "T2523C", "T2530C", "A2532T", "A2541T", "G2547T", "G2560A", "T2571A", "T2574C", "C2578T", "T2580A", "T2598A", "T2599C", "C2604T", "T2631G", "T2634A", "C2635T", "A2643G", "T2658C", "T2661C", "G2662T", "T2679C", "T2682C", "C2691T", "T2697A", "C2733T", "A2739G", "G2746C", "G2747A", "A2754G", "T2769C", "C2787T", "A2788G", "A2796C", "A2806T", "C2814T", "A2826T", "T2842C", "A2844T", "A2862C", "G2871A", "A2901C", "T2919C", "G2920A", "T2937G", "T2943C", "A2952G", "T2958C", "C2964T", "C2976T", "A2994T", "A3003T", "T3009A", "A3012G", "T3015G", "G3021T", "T3024C", "T3030C", "A3037G", "C3038T", "T3046C", "A3048C", "G3054A", "G3062A", "A3072G", "A3076G", "A3081G", "C3091T", "T3093A", "T3096C", "T3102C", "A3111T", "T3141C", "G3147A", "A3153G", "T3159G", "T3165C", "T3180A", "T3195C", "A3202T", "T3207G", "T3227C", "A3234T", "A3240C", "T3276C", "G3285A", "T3291C", "T3300A", "T3309A", "T3316G", "C3330T", "T3333A", "G3345A", "C3349T", "T3351A", "G3357T", "T3360A", "T3361C", "A3376G", "T3378A", "G3390C", "C3403T", "G3405A", "T3414A", "A3420C", "C3421T", "T3429C", "A3430C", "C3438T", "A3441G", "G3444A", "C3453T", "C3461A", "T3465G", "G3469T", "T3472G", "-3479A", "-3480G", "-3484G", "T3490A", "A3492G", "-3493T", "-3496C", "T3498-", "A3499-", "A3501C", "T3504A", "C3506-", "T3514C", "T3516C", "T3517A", "T3520C", "T3523A", "G3526A", "G3529A", "C3530T", "C3532-", "-3537G", "T3544C", "A3546G", "C3548T", "C3550A", "T3558-", "C3561G", "T3562C", "T3564C", "-3578C", "-3580C", "T3589A", "C3615A"], "GPC": ["K21R", "I42V", "E46D", "I50V", "S51T", "I52V", "E53G", "A55V", "S56A", "T70P", "T71L", "D88E", "A102S", "T104V", "K125R", "L131F", "Y147H", "I170V", "S199T", "A202V", "T207I", "T217V", "L224M", "I227V", "Y247H", "S274G", "R275H", "S291A", "I301V", "T302A", "D312E", "T317I", "I353E", "V435I", "M489L", "S492L", "A503T", "F511I", "V514A", "N524S", "F530L", "H553Q", "I569L", "G598N", "K614R", "K615R", "V638I", "C642F", "A649V", "S658A", "V670L", "V714I", "T721S", "T729V", "F730L", "A741E", "Q743K", "T764N", "V785I", "I810V", "V837I", "I860M", "A871S", "G899H", "I913V", "M919L", "V957I", "T996V", "S1004N", "I1009V", "T1051S", "D1052E", "V1059A", "F1089V", "I1109V", "I1127L", "T1137N"], "Gc": ["S7A", "V19L", "V63I", "T70S", "T78V", "F79L", "A90E", "Q92K", "T113N", "V134I", "I159V", "V186I", "I209M", "A220S", "G248H", "I262V", "M268L", "V306I", "T345V", "S353N", "I358V", "T400S", "D401E", "V408A", "F438V", "I458V", "I476L", "T486N"], "Gn": ["K21R", "I42V", "E46D", "I50V", "I52V", "E53G", "A55V", "S56A", "T70P", "T71L", "F78Y", "T104V", "K125R", "L131F", "Y147H", "I170V", "I185V", "S199T", "A202V", "T207I", "T217V", "L224M", "I227V", "T235S", "Y247H", "I260H", "S274G", "R275H", "S291A", "I301V", "T302A", "D312E", "K315Q", "T317I", "V353E", "V435I", "M489L", "S492L", "A503T", "M514A", "N524S", "F530L", "H553Q", "I569L", "G598N", "K615R", "C642F", "A649V"]}, "labels": {"aa": "GPC: K21R, I42V, E46D, I50V, S51T, I52V, E53G, A55V, S56A, T70P, T71L, D88E, A102S, T104V, K125R, L131F, Y147H, I170V, S199T, A202V, T207I, T217V, L224M, I227V, Y247H, S274G, R275H, S291A, I301V, T302A, D312E, T317I, I353E, V435I, M489L, S492L, A503T, F511I, V514A, N524S, F530L, H553Q, I569L, G598N, K614R, K615R, V638I, C642F, A649V, S658A, V670L, V714I, T721S, T729V, F730L, A741E, Q743K, T764N, V785I, I810V, V837I, I860M, A871S, G899H, I913V, M919L, V957I, T996V, S1004N, I1009V, T1051S, D1052E, V1059A, F1089V, I1109V, I1127L, T1137N; Gc: S7A, V19L, V63I, T70S, T78V, F79L, A90E, Q92K, T113N, V134I, I159V, V186I, I209M, A220S, G248H, I262V, M268L, V306I, T345V, S353N, I358V, T400S, D401E, V408A, F438V, I458V, I476L, T486N; Gn: K21R, I42V, E46D, I50V, I52V, E53G, A55V, S56A, T70P, T71L, F78Y, T104V, K125R, L131F, Y147H, I170V, I185V, S199T, A202V, T207I, T217V, L224M, I227V, T235S, Y247H, I260H, S274G, R275H, S291A, I301V, T302A, D312E, K315Q, T317I, V353E, V435I, M489L, S492L, A503T, M514A, N524S, F530L, H553Q, I569L, G598N, K615R, C642F, A649V"}}}, {"name": "NODE_0000022", "node_attrs": {"div": 0.158281, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C32A", "G34T", "A38G", "A41G", "A45G", "G47T", "A48T", "T67C", "T74C", "C75T", "T76C", "G78T", "C89A", "A93G", "A126G", "C129T", "T147C", "A156T", "T171C", "T186A", "C190T", "C195T", "C202T", "A219T", "T223A", "A234G", "A240T", "C243T", "C255T", "A264G", "A271G", "T273C", "A276G", "A279G", "C282T", "A284T", "T285C", "T288C", "G309A", "A315C", "A327C", "G330A", "A342C", "A348C", "T355G", "G361A", "A372T", "C379A", "G391A", "T438A", "A441C", "C444G", "G456A", "C474T", "A486T", "A508C", "A510G", "A525T", "G528A", "C531T", "A540T", "C546G", "T570C", "C582A", "C591A", "G604A", "T636A", "C637T", "T645A", "A648T", "G651A", "A675T", "A678C", "G685A", "A688T", "T699C", "A708G", "T714G", "A717G", "T727G", "G730A", "G735A", "A750T", "A751C", "T753G", "T756A", "C765T", "T768C", "A774G", "C781T", "T798G", "A810G", "C816T", "C826T", "C829A", "A830T", "A843G", "T849C", "C852A", "A855G", "A858T", "G864A", "A876G", "A880C", "T888C", "A891T", "A894G", "T897A", "C910G", "A912T", "T915A", "A927G", "G928A", "A936G", "G939A", "T972A", "C978T", "T981C", "T984A", "C993A", "T1002A", "T1011A", "T1014C", "T1017C", "A1038G", "T1047C", "C1086A", "A1092G", "G1108A", "A1126G", "C1128A", "T1150C", "G1152A", "T1155A", "C1158A", "A1182T", "C1188T", "T1203A", "T1204C", "A1209G", "A1221T", "G1242A", "A1260C", "T1290C", "A1295G", "G1305A", "G1311A", "A1314G", "T1320A", "C1332T", "A1336C", "A1338G", "A1347G", "G1383C", "G1389A", "G1395A", "A1401G", "C1410A", "A1419T", "G1458A", "C1476A", "G1488C", "C1494A", "C1530A", "T1536C", "T1539C", "C1542G", "A1551G", "A1554T", "A1557T", "A1561G", "T1563A", "T1572A", "G1573A", "C1575A", "C1576T", "T1583G", "C1584T", "A1589G", "G1593T", "A1596G", "C1608T", "A1611C", "T1617C", "T1641C", "A1677T", "A1692G", "C1701A", "C1704T", "C1707T", "A1728G", "A1734T", "G1788A", "G1794A", "A1800T", "T1818C", "C1845A", "A1857G", "G1866A", "G1875T", "A1881G", "G1892A", "T1912C", "A1917G", "A1924C", "C1941T", "C1950T", "T1956A", "T1962C", "G1963C", "A1971G", "C1981A", "A1984G", "A2007G", "T2016A", "C2017A", "A2028T", "A2043T", "A2055T", "A2058G", "G2059A", "A2070G", "T2088C", "A2097G", "C2118T", "T2121C", "T2136A", "T2139C", "C2145T", "A2157G", "C2163T", "A2196T", "A2202T", "A2205G", "T2208C", "A2214C", "G2217A", "G2220T", "T2286C", "A2301G", "G2305T", "A2307T", "T2313C", "T2328C", "T2346C", "C2355T", "G2364T", "T2367C", "T2373A", "A2376G", "A2385T", "T2388G", "C2391T", "A2397T", "G2406T", "T2430G", "A2439C", "C2451T", "G2469A", "A2475T", "A2484G", "G2496A", "T2538A", "A2550G", "A2553C", "T2559A", "T2562G", "G2565C", "T2568A", "C2592T", "C2605T", "G2610T", "T2614C", "T2631C", "T2634C", "G2637T", "G2640A", "T2658A", "A2694T", "A2695C", "C2730A", "C2734A", "C2748T", "A2754C", "T2763A", "A2766T", "G2772A", "G2781A", "C2790T", "C2814A", "G2820A", "A2853T", "T2856C", "T2895A", "C2902A", "T2904A", "T2907C", "C2950T", "T2982C", "A3012T", "T3018C", "T3045A", "C3066T", "T3069G", "T3117A", "T3129C", "T3135C", "A3162G", "T3165A", "G3168T", "T3177G", "T3204A", "T3210C", "T3213C", "G3226C", "T3255A", "T3258A", "A3261C", "C3267T", "C3282T", "C3288T", "T3312C", "T3318C", "G3321A", "T3333C", "A3342T", "T3360C", "T3366C", "T3369G", "T3387A", "G3405C", "C3408T", "T3409C", "T3411C", "A3417C", "C3421A", "A3423G", "T3426C", "A3430G", "A3441C", "-3474A", "-3479C", "-3480A", "-3484C", "-3486T", "-3493G", "-3496T", "-3497A", "C3506T", "A3515T", "-3537A", "T3553G", "A3563T", "C3569G", "C3577T", "-3578G", "-3580A", "T3589C", "T3590A", "C3617T", "A3621T"], "GPC": ["V8A", "S13Y", "L58I", "T74A", "Y78F", "V114I", "I153L", "V185I", "V212I", "T213S", "L226V", "I234L", "S235T", "H260I", "I277L", "P287A", "G293S", "A311T", "Q315K", "I359V", "K415R", "I504V", "V508I", "F511C", "K513R", "M579I", "V638L", "L644I", "I645V", "L656M", "V670I", "T721P", "A752S", "T882P", "I1006M", "V1059L", "F1120L", "L1124M", "I1127V"], "Gc": ["L5M", "V19I", "T70P", "A101S", "T231P", "I355M", "V408L", "F469L", "L473M", "I476V"], "Gn": ["V8A", "S13Y", "T51S", "L58I", "T74A", "E88D", "S102A", "V114I", "I153L", "V212I", "T213S", "L226V", "I234L", "I277L", "P287A", "G293S", "A311T", "V353I", "I359V", "K415R", "I504V", "V508I", "I511C", "K513R", "M514V", "M579I", "R614K", "I638L", "L644I", "I645V"]}, "labels": {"aa": "GPC: V8A, S13Y, L58I, T74A, Y78F, V114I, I153L, V185I, V212I, T213S, L226V, I234L, S235T, H260I, I277L, P287A, G293S, A311T, Q315K, I359V, K415R, I504V, V508I, F511C, K513R, M579I, V638L, L644I, I645V, L656M, V670I, T721P, A752S, T882P, I1006M, V1059L, F1120L, L1124M, I1127V; Gc: L5M, V19I, T70P, A101S, T231P, I355M, V408L, F469L, L473M, I476V; Gn: V8A, S13Y, T51S, L58I, T74A, E88D, S102A, V114I, I153L, V212I, T213S, L226V, I234L, I277L, P287A, G293S, A311T, V353I, I359V, K415R, I504V, V508I, I511C, K513R, M514V, M579I, R614K, I638L, L644I, I645V"}}, "children": [{"name": "NODE_0000023", "node_attrs": {"div": 0.167409, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T414C", "A417G", "A432G", "C454T", "G609A", "C1104T", "G1122A", "G1230A", "T1398A", "T1485C", "C1522T", "A1587G", "A1803G", "A1845G", "A1926C", "C1973T", "T1977C", "C2095T", "T2148C", "T2241C", "T2259C", "G2601A", "A2863G", "T2967C", "G3132A", "G3345A", "G3394A", "T3414C", "G3509A", "T3515C", "T3588C"], "GPC": ["T641I", "T938A", "V1115I"], "Gc": ["T287A", "V464I"], "Gn": ["T641I"]}, "labels": {"aa": "GPC: T641I, T938A, V1115I; Gc: T287A, V464I; Gn: T641I"}}, "children": [{"name": "NODE_0000024", "node_attrs": {"div": 0.172317, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G45A", "T48C", "C751T", "G846A", "T1275C", "G1347A", "A1389G", "T1399C", "G1917A", "G2022A", "C2133T", "C2175T", "T2199C", "T2397C", "T2475C", "G2547A", "C2685T", "A2835G", "T3009C"]}}, "children": [{"name": "PP_006W09H|AREB14/P3|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172318, "strain": {"value": "PP_006W09H|AREB14/P3|nan/XXXX-XX-XX"}, "accession": "PP_006W09H", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "PPX_accession": {"value": "PP_006W09H.1", "url": "https://pathoplexus.org/seq/PP_006W09H.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850090.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850090.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3643}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000025", "node_attrs": {"div": 0.172318, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W08K|AREB14/P2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172318, "strain": {"value": "PP_006W08K|AREB14/P2|nan/XXXX-XX-XX"}, "accession": "PP_006W08K", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "PPX_accession": {"value": "PP_006W08K.1", "url": "https://pathoplexus.org/seq/PP_006W08K.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850089.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850089.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3679}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W07M|AREB14/P1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172318, "strain": {"value": "PP_006W07M|AREB14/P1|nan/XXXX-XX-XX"}, "accession": "PP_006W07M", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "PPX_accession": {"value": "PP_006W07M.1", "url": "https://pathoplexus.org/seq/PP_006W07M.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850088.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850088.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3639}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000026", "node_attrs": {"div": 0.169779, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T909C", "A1497G", "A1569G", "G1968A", "T2523C", "T2745C", "A2988G", "T3372C"]}}, "children": [{"name": "NODE_0000027", "node_attrs": {"div": 0.170133, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G1671A"]}}, "children": [{"name": "PP_006W0BD|ARLA17/NRC2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.174835, "strain": {"value": "PP_006W0BD|ARLA17/NRC2|nan/XXXX-XX-XX"}, "accession": "PP_006W0BD", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "PPX_accession": {"value": "PP_006W0BD.1", "url": "https://pathoplexus.org/seq/PP_006W0BD.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850092.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850092.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3646}}, "branch_attrs": {"mutations": {"nuc": ["A57C", "G681A", "G1071A", "A1203G", "C1353T", "C1464T", "C1485T", "A1563G", "T1810C", "A1932G", "A2040G", "C2166T", "A2340G", "C2565T", "G3118T", "C3360T", "T3513C", "T3520C", "T3551C"], "GPC": ["E2D", "A1023S"], "Gc": ["A372S"], "Gn": ["E2D"]}, "labels": {"aa": "GPC: E2D, A1023S; Gc: A372S; Gn: E2D"}}}, {"name": "PP_006VZ20|Epilink/96_2/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.172478, "strain": {"value": "PP_006VZ20|Epilink/96_2/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ20", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ20.1", "url": "https://pathoplexus.org/seq/PP_006VZ20.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258189.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258189.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3667}}, "branch_attrs": {"mutations": {"nuc": ["G264A", "G423A", "G1446A", "T1635C", "T2163C", "C2212A", "T2292C", "G2670A"], "GPC": ["P721T"], "Gc": ["P70T"]}, "labels": {"aa": "GPC: P721T; Gc: P70T"}}}]}, {"name": "NODE_0000028", "node_attrs": {"div": 0.171532, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T697C", "G747A", "G798A", "T912C", "A1086C", "T1332C"], "GPC": ["F216L"], "Gn": ["F216L"]}, "labels": {"aa": "GPC: F216L; Gn: F216L"}}, "children": [{"name": "PP_006VZ7Q|NRC-6/18_05/21/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.176895, "strain": {"value": "PP_006VZ7Q|NRC-6/18_05/21/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ7Q", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ7Q.1", "url": "https://pathoplexus.org/seq/PP_006VZ7Q.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258194.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258194.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3664}}, "branch_attrs": {"mutations": {"nuc": ["A31G", "T66C", "C180A", "G279A", "A303G", "G423A", "G480A", "C1435T", "A1458T", "C1929T", "T2112A", "C2133T", "T2163C", "C2212A", "A2622G", "C2631T", "C2787T", "A2796G", "T3030G"], "GPC": ["P721T"], "Gc": ["P70T"]}, "labels": {"aa": "GPC: P721T; Gc: P70T"}}}, {"name": "NODE_0000029", "node_attrs": {"div": 0.175873, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G546T", "A609G", "C633T", "T675C", "A1242G", "T1254C", "C1260T", "A1305G", "A1530C", "G1569A", "T1776C", "T1800C", "C2014T", "G2988A", "A3315T"]}}, "children": [{"name": "PP_006W01Z|Epuyen/18-19_Patient_2_11/23/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175875, "strain": {"value": "PP_006W01Z|Epuyen/18-19_Patient_2_11/23/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006W01Z", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006W01Z.1", "url": "https://pathoplexus.org/seq/PP_006W01Z.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258215.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258215.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3386}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000030", "node_attrs": {"div": 0.175875, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.176167, "strain": {"value": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZAJ", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZAJ.1", "url": "https://pathoplexus.org/seq/PP_006VZAJ.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258197.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258197.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3655}}, "branch_attrs": {"mutations": {"nuc": ["G264A"]}}}, {"name": "NODE_0000031", "node_attrs": {"div": 0.175878, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ8N|Epuyen/18-19_Patient_10_12/10/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZ8N|Epuyen/18-19_Patient_10_12/10/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ8N", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ8N.1", "url": "https://pathoplexus.org/seq/PP_006VZ8N.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258195.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258195.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3639}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000032", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZJ1|Epuyen/18-19_Patient_1_11/3/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZJ1|Epuyen/18-19_Patient_1_11/3/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZJ1", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZJ1.1", "url": "https://pathoplexus.org/seq/PP_006VZJ1.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258205.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258205.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3654}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000033", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZZ5", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZZ5.1", "url": "https://pathoplexus.org/seq/PP_006VZZ5.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258221.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258221.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3654}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000034", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZRM|Epuyen/18-19_Patient_27_1/8/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZRM|Epuyen/18-19_Patient_27_1/8/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZRM", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZRM.1", "url": "https://pathoplexus.org/seq/PP_006VZRM.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258212.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258212.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3647}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000035", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZH3|Epuyen/18-19_Patient_19_1/2/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZH3|Epuyen/18-19_Patient_19_1/2/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZH3", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZH3.1", "url": "https://pathoplexus.org/seq/PP_006VZH3.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258204.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258204.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3656}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000036", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZWB", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZWB.1", "url": "https://pathoplexus.org/seq/PP_006VZWB.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258218.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258218.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3649}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000037", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZBG|Epuyen/18-19_Patient_13_12/24/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZBG|Epuyen/18-19_Patient_13_12/24/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZBG", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZBG.1", "url": "https://pathoplexus.org/seq/PP_006VZBG.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258198.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258198.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3657}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000038", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZX9|Epuyen/18-19_Patient_6_11/25/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZX9|Epuyen/18-19_Patient_6_11/25/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZX9", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZX9.1", "url": "https://pathoplexus.org/seq/PP_006VZX9.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258219.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258219.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3669}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000039", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A2G"]}}, "children": [{"name": "PP_006VZTH|Epuyen/18-19_Patient_29_1/14/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZTH|Epuyen/18-19_Patient_29_1/14/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZTH", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZTH.1", "url": "https://pathoplexus.org/seq/PP_006VZTH.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258214.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258214.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3665}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000040", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZVD|Epuyen/18-19_Patient_4_11/27/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZVD|Epuyen/18-19_Patient_4_11/27/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZVD", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZVD.1", "url": "https://pathoplexus.org/seq/PP_006VZVD.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258217.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258217.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3659}}, "branch_attrs": {"mutations": {"nuc": ["T3551C"]}}}, {"name": "NODE_0000041", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W001|Epuyen/18-19_Patient_9_12/12/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006W001|Epuyen/18-19_Patient_9_12/12/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006W001", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006W001.1", "url": "https://pathoplexus.org/seq/PP_006W001.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258222.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258222.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3669}}, "branch_attrs": {"mutations": {"nuc": ["G3C"]}}}, {"name": "NODE_0000042", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ9L", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ9L.1", "url": "https://pathoplexus.org/seq/PP_006VZ9L.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258196.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258196.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3645}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000043", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZNT", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZNT.1", "url": "https://pathoplexus.org/seq/PP_006VZNT.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258209.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258209.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3652}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000044", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZY7|Epuyen/18-19_Patient_7_12/7/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZY7|Epuyen/18-19_Patient_7_12/7/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZY7", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZY7.1", "url": "https://pathoplexus.org/seq/PP_006VZY7.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258220.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258220.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3655}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000045", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZSK", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZSK.1", "url": "https://pathoplexus.org/seq/PP_006VZSK.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258213.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258213.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3647}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000046", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZKZ|Epuyen/18-19_Patient_20_1/1/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZKZ|Epuyen/18-19_Patient_20_1/1/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZKZ", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZKZ.1", "url": "https://pathoplexus.org/seq/PP_006VZKZ.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258206.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258206.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3655}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000047", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZMV|Epuyen/18-19_Patient_23_1/7/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZMV|Epuyen/18-19_Patient_23_1/7/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZMV", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZMV.1", "url": "https://pathoplexus.org/seq/PP_006VZMV.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258208.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258208.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3646}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000048", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZDC|Epuyen/18-19_Patient_15_12/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZDC|Epuyen/18-19_Patient_15_12/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZDC", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZDC.1", "url": "https://pathoplexus.org/seq/PP_006VZDC.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258200.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258200.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3633}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000049", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2C9|Epuyen|Argentina/2022-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006W2C9|Epuyen|Argentina/2022-XX-XX"}, "accession": "PP_006W2C9", "author": {"author": "Coelho, R.; Kehl, S.; Periolo, N.; Alonso, D.; Bellomo, C.; Martinez, V.", "value": "Coelho, R.; Kehl, S.; Periolo, N.; Alonso, D.; Bellomo, C.; Martinez, V."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "2022-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2024-09-25"}, "PPX_accession": {"value": "PP_006W2C9.1", "url": "https://pathoplexus.org/seq/PP_006W2C9.1"}, "abbr_authors": {"value": "Coelho et al."}, "INSDC_accession": {"value": "PQ215669.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PQ215669.1"}, "institution": {"value": "INEI ANLIS, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "length": {"value": 3647}}, "branch_attrs": {"mutations": {"nuc": ["A3645C", "T3648G"]}}}, {"name": "NODE_0000050", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZF8|Epuyen/18-19_Patient_17_12/31/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZF8|Epuyen/18-19_Patient_17_12/31/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZF8", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZF8.1", "url": "https://pathoplexus.org/seq/PP_006VZF8.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258202.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258202.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3659}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000051", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZEA", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZEA.1", "url": "https://pathoplexus.org/seq/PP_006VZEA.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258201.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258201.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3651}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000052", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZPR|Epuyen/18-19_Patient_25_1/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZPR|Epuyen/18-19_Patient_25_1/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZPR", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZPR.1", "url": "https://pathoplexus.org/seq/PP_006VZPR.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258210.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258210.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3654}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000053", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZG6|Epuyen/18-19_Patient_18_12/31/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZG6|Epuyen/18-19_Patient_18_12/31/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZG6", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZG6.1", "url": "https://pathoplexus.org/seq/PP_006VZG6.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258203.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258203.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3633}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000054", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZUF|Epuyen/18-19_Patient_3_11/20/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZUF|Epuyen/18-19_Patient_3_11/20/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZUF", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZUF.1", "url": "https://pathoplexus.org/seq/PP_006VZUF.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258216.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258216.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3654}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000055", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZQP|Epuyen/18-19_Patient_26_1/4/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZQP|Epuyen/18-19_Patient_26_1/4/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZQP", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZQP.1", "url": "https://pathoplexus.org/seq/PP_006VZQP.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258211.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258211.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3654}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000056", "node_attrs": {"div": 0.175879, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZLX|Epuyen/18-19_Patient_22_1/1/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZLX|Epuyen/18-19_Patient_22_1/1/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZLX", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZLX.1", "url": "https://pathoplexus.org/seq/PP_006VZLX.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258207.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258207.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3661}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZCE|Epuyen/18-19_Patient_14_12/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.175879, "strain": {"value": "PP_006VZCE|Epuyen/18-19_Patient_14_12/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZCE", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZCE.1", "url": "https://pathoplexus.org/seq/PP_006VZCE.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258199.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258199.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3658}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000057", "node_attrs": {"div": 0.166188, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A159C", "C324T", "C669T", "A996G", "G1038T", "G1050A", "G1083T", "G1092T", "C1101T", "G1293A", "A1410G", "A1413G", "A1503G", "A1546G", "C1830T", "A1914T", "T1995C", "C2409T", "C2448A", "T2580C", "A2895G", "T2916C", "G2979A", "C3018A", "A3081G", "T3225A", "C3435G", "T3465C"], "GPC": ["I499V"], "Gn": ["I499V"]}, "labels": {"aa": "GPC: I499V; Gn: I499V"}}, "children": [{"name": "NODE_0000058", "node_attrs": {"div": 0.171959, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C147T", "C699T", "G894A", "A1056G", "A1108G", "T1164G", "A1281C", "A1470C", "T1710C", "G2022A", "C2172T", "A2193G", "G2301A", "C2691T", "T2799C", "A2973G", "C3090T", "A3255G", "T3351C", "T3478G"], "GPC": ["I353V"], "Gn": ["I353V"]}, "labels": {"aa": "GPC: I353V; Gn: I353V"}}, "children": [{"name": "NODE_0000059", "node_attrs": {"div": 0.177603, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C111T", "G420A", "T447C", "A456T", "G507A", "C555T", "C643T", "T675C", "T765G", "A771G", "T831C", "C1365T", "A1566G", "C1861T", "T2055C", "C2277T", "C2553T", "C2614T", "A2781G", "G3147A", "T3486C", "T3516C", "T3517C"]}}, "children": [{"name": "NODE_0000060", "node_attrs": {"div": 0.178413, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G444A", "T2052C"]}}, "children": [{"name": "PP_006VZ3Y|NRC-2/97_06/01/1996|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.189694, "strain": {"value": "PP_006VZ3Y|NRC-2/97_06/01/1996|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ3Y", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ3Y.1", "url": "https://pathoplexus.org/seq/PP_006VZ3Y.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258190.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258190.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3646}}, "branch_attrs": {"mutations": {"nuc": ["G86A", "A303G", "C441T", "T456C", "C489T", "G564A", "C624T", "T666C", "G681A", "T912C", "G966A", "C1150T", "G1354A", "A1491G", "T1500C", "T1521A", "T1549C", "G1626A", "A1722T", "C1770T", "G1812A", "T1875G", "A1884G", "T1923C", "T1969C", "C2133T", "C2166T", "T2223C", "C2466T", "T2475C", "A2502G", "C2565A", "A2629G", "T2712C", "T2748G", "G3060A", "C3273T", "C3333T", "C3441T", "A3475G", "A3552G"], "GPC": ["C12Y", "V435I", "I860V"], "Gc": ["I209V"], "Gn": ["C12Y", "V435I"]}, "labels": {"aa": "GPC: C12Y, V435I, I860V; Gc: I209V; Gn: C12Y, V435I"}}}, {"name": "PP_006W05R|1a|Chile/2012-11-XX", "node_attrs": {"div": 0.185892, "strain": {"value": "PP_006W05R|1a|Chile/2012-11-XX"}, "accession": "PP_006W05R", "author": {"author": "Ferres, M.; Martinez-Valdebenito, C.; Angulo, J.; Henriquez, C.; Vera-Otarola, J.; Vergara, M. J.; Perez, J.; Fernandez, J.; Sotomayor, V.; Tischler, N.; Vial, C.; Vial, P.; Mertz, G.; Le Corre, N.", "value": "Ferres, M.; Martinez-Valdebenito, C.; Angulo, J.; Henriquez, C.; Vera-Otarola, J.; Vergara, M. J.; Perez, J.; Fernandez, J.; Sotomayor, V.; Tischler, N.; Vial, C.; Vial, P.; Mertz, G.; Le Corre, N."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Chile"}, "date": {"value": "2012-11-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2021-03-28"}, "PPX_accession": {"value": "PP_006W05R.1", "url": "https://pathoplexus.org/seq/PP_006W05R.1"}, "abbr_authors": {"value": "Ferres et al."}, "INSDC_accession": {"value": "MN807443.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN807443.1"}, "institution": {"value": "Pontificia Universidad Catolica, Laboratorio De Infectologia"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 2031}}, "branch_attrs": {"mutations": {"nuc": ["G144A", "G600A", "G603A", "C675T", "G714A", "T789C", "G945A", "T1263C", "A1341G", "G1413A", "T1455C", "T1662C", "G1674A", "T1758C", "C1818T"]}}}]}, {"name": "NODE_0000061", "node_attrs": {"div": 0.177802, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A993G"]}}, "children": [{"name": "NODE_0000062", "node_attrs": {"div": 0.189481, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G82A", "G264A", "A432G", "A513C", "G615A", "T637C", "T1026C", "G1056A", "T1077C", "G1179A", "C1260T", "T1308C", "T1356C", "G1371A", "G1542A", "T1594C", "T1662C", "G1671A", "T1758C", "C1929T", "G2082A", "T2160A", "C2169T", "T2247C", "C2328T", "C2346T", "G2388A", "G2436A", "C2556T", "T2605C", "A2613G", "T2769C", "T2775C", "G2781T", "C2799T", "A2863G", "C3129T", "T3243C", "A3468G"], "GPC": ["V11I", "T938A"], "Gc": ["T287A"], "Gn": ["V11I"]}, "labels": {"aa": "GPC: V11I, T938A; Gc: T287A; Gn: V11I"}}, "children": [{"name": "PP_006VQHC|CHI-7913|Chile/XXXX-XX-XX", "node_attrs": {"div": 0.19541, "strain": {"value": "PP_006VQHC|CHI-7913|Chile/XXXX-XX-XX"}, "accession": "PP_006VQHC", "author": {"author": "Tischler, N. D.; Fernandez, J.; Muller, I.; Martinez, R.; Galeno, H.; Villagra, E.; Mora, J.; Ramirez, E.; Rosemblatt, M.; Valenzuela, P. D.; Mueller, I.; Valenzuela, P. D. T.", "value": "Tischler, N. D.; Fernandez, J.; Muller, I.; Martinez, R.; Galeno, H.; Villagra, E.; Mora, J.; Ramirez, E.; Rosemblatt, M.; Valenzuela, P. D.; Mueller, I.; Valenzuela, P. D. T."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Chile"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2003-05-01"}, "PPX_accession": {"value": "PP_006VQHC.1", "url": "https://pathoplexus.org/seq/PP_006VQHC.1"}, "abbr_authors": {"value": "Tischler et al."}, "INSDC_accession": {"value": "AY228238.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AY228238.1"}, "institution": {"value": "Fundacion Ciencia para la Vida, Departamento de Desarrollo e Investigacion"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3641}}, "branch_attrs": {"mutations": {"nuc": ["T119C", "T543A", "A709G", "A786G", "C831T", "A837G", "C841T", "C870T", "A894G", "G900A", "T912C", "A918G", "G927A", "T931C", "G1049A", "T1695C", "C2164T", "T2246C", "A2629G", "A3153G", "A3645C", "T3649A", "G3650A", "T3652C"], "GPC": ["I23T", "S164R", "K220E", "Y294H", "R333K", "P705S", "I732T", "I860V"], "Gc": ["P54S", "I81T", "I209V"], "Gn": ["I23T", "S164R", "K220E", "Y294H", "R333K"]}, "labels": {"aa": "GPC: I23T, S164R, K220E, Y294H, R333K, P705S, I732T, I860V; Gc: P54S, I81T, I209V; Gn: I23T, S164R, K220E, Y294H, R333K"}}}, {"name": "NODE_0000063", "node_attrs": {"div": 0.190011, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T826C", "A864G"]}}, "children": [{"name": "PP_006W2HY|CHI-7913|Chile/1999-XX-XX", "node_attrs": {"div": 0.190012, "strain": {"value": "PP_006W2HY|CHI-7913|Chile/1999-XX-XX"}, "accession": "PP_006W2HY", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Chile"}, "date": {"value": "1999-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "PPX_accession": {"value": "PP_006W2HY.1", "url": "https://pathoplexus.org/seq/PP_006W2HY.1"}, "abbr_authors": {"value": "Barrera et al."}, "INSDC_accession": {"value": "PV808471.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808471.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3670}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0CB|CHI-7913|Chile/1999-XX-XX", "node_attrs": {"div": 0.190012, "strain": {"value": "PP_006W0CB|CHI-7913|Chile/1999-XX-XX"}, "accession": "PP_006W0CB", "author": {"author": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D.", "value": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Chile"}, "date": {"value": "1999-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2021-02-27"}, "PPX_accession": {"value": "PP_006W0CB.1", "url": "https://pathoplexus.org/seq/PP_006W0CB.1"}, "abbr_authors": {"value": "Warner et al."}, "INSDC_accession": {"value": "MT956619.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MT956619.1"}, "institution": {"value": "Public Health Agency of Canada, Special Pathogens"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3641}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000064", "node_attrs": {"div": 0.181989, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C342T", "T618C", "A1011G", "A1050G", "A1242G", "T1275C", "C1464T", "C1995T", "C2139T", "A2211G", "T2391C", "C2787T", "G3060T", "C3213T", "C3485T", "A3645C"]}}, "children": [{"name": "NODE_0000065", "node_attrs": {"div": 0.187937, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C441T", "T456C", "G468A", "C489A", "A582G", "G855A", "A1035C", "G1209A", "T1236C", "A1395G", "C1515T", "A1794G", "G1854A", "T2100C", "G2625A", "G2628A", "T2676C", "A2788G", "C2829T", "A2988G", "C3484T", "T3544C", "C3582T"], "GPC": ["L328F", "I913V"], "Gc": ["I262V"], "Gn": ["L328F"]}, "labels": {"aa": "GPC: L328F, I913V; Gc: I262V; Gn: L328F"}}, "children": [{"name": "PP_006VZ6S|NRC-5/18_06/01/2018|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.194171, "strain": {"value": "PP_006VZ6S|NRC-5/18_06/01/2018|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ6S", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ6S.1", "url": "https://pathoplexus.org/seq/PP_006VZ6S.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258193.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258193.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3650}}, "branch_attrs": {"mutations": {"nuc": ["T90C", "C679T", "C841T", "A864G", "G927A", "C1029T", "C1047T", "C1055T", "A1155G", "T1308G", "T1365C", "C1536T", "T1593G", "A1683G", "A1788G", "T1950G", "G1953A", "G1954A", "A2664T", "A2715G", "G2781A", "C3645A"], "GPC": ["A335V", "I579M", "V635I"], "Gn": ["A335V", "I579M", "V635I"]}, "labels": {"aa": "GPC: A335V, I579M, V635I; Gn: A335V, I579M, V635I"}}}, {"name": "PP_006VP2A|AH-1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.191131, "strain": {"value": "PP_006VP2A|AH-1|nan/XXXX-XX-XX"}, "accession": "PP_006VP2A", "author": {"author": "Padula, P. J.; Sanchez, A. J.; Edelstein, A.; Nichol, S. T.", "value": "Padula, P. J.; Sanchez, A. J.; Edelstein, A.; Nichol, S. T."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2001-03-01"}, "PPX_accession": {"value": "PP_006VP2A.1", "url": "https://pathoplexus.org/seq/PP_006VP2A.1"}, "abbr_authors": {"value": "Padula et al."}, "INSDC_accession": {"value": "AF324901.2", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF324901.2"}, "institution": {"value": "Instituto Nacional de Enfermedades Infecciosas, A.N.L.I.S. Dr. Carlos G. Malbran, Departamento de Virologia"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3668}}, "branch_attrs": {"mutations": {"nuc": ["G264A", "G360A", "G893T", "G993A", "C1001T", "A1269G", "T1594C", "T1662C", "A2022G", "A2283G", "A2469G", "C3591T"], "GPC": ["R281I", "T317I"], "Gn": ["R281I", "T317I"]}, "labels": {"aa": "GPC: R281I, T317I; Gn: R281I, T317I"}}}]}, {"name": "NODE_0000066", "node_attrs": {"div": 0.190292, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T243C", "T408C", "A522T", "A645G", "G771A", "G774A", "G936A", "T1038A", "C1150T", "C1257T", "A1359G", "G1692A", "G1728A", "T1899C", "C1905T", "A1938G", "G1953A", "G1971A", "C2014T", "T2052C", "G2124A", "T2241C", "C2419T", "C2463T", "A2844G", "G3145A", "G3435A", "C3470T", "C3486T"], "GPC": ["V1032I"], "Gc": ["V381I"]}, "labels": {"aa": "GPC: V1032I; Gc: V381I"}}, "children": [{"name": "PP_006VWNW|LS-CH2016|Switzerland/2016-12-23", "node_attrs": {"div": 0.190585, "strain": {"value": "PP_006VWNW|LS-CH2016|Switzerland/2016-12-23"}, "accession": "PP_006VWNW", "author": {"author": "Beuret, C. M.; Siegrist, D.", "value": "Beuret, C. M.; Siegrist, D."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Switzerland"}, "date": {"value": "2016-12-23"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-01-31"}, "PPX_accession": {"value": "PP_006VWNW.1", "url": "https://pathoplexus.org/seq/PP_006VWNW.1"}, "abbr_authors": {"value": "Beuret et al."}, "INSDC_accession": {"value": "KY604962.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/KY604962.1"}, "institution": {"value": "Spiez Laboratory, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "Europe"}, "host": {"value": "human"}, "length": {"value": 3668}}, "branch_attrs": {"mutations": {"nuc": ["A44T", "A309G", "T3606C"]}}}, {"name": "NODE_0000067", "node_attrs": {"div": 0.190584, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T801C"]}}, "children": [{"name": "PP_006W0X6|ANDV-CH-LS-2016|Switzerland/2016-XX-XX", "node_attrs": {"div": 0.190586, "strain": {"value": "PP_006W0X6|ANDV-CH-LS-2016|Switzerland/2016-XX-XX"}, "accession": "PP_006W0X6", "author": {"author": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N.", "value": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Switzerland"}, "date": {"value": "2016-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-02"}, "PPX_accession": {"value": "PP_006W0X6.1", "url": "https://pathoplexus.org/seq/PP_006W0X6.1"}, "abbr_authors": {"value": "Zuest et al."}, "INSDC_accession": {"value": "OR405524.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR405524.1"}, "institution": {"value": "Spiez Laboratory, Biology Department"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "Europe"}, "host": {"value": "human"}, "length": {"value": 3606}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0W8|ANDV-CH-LS-2022|Switzerland/2022-XX-XX", "node_attrs": {"div": 0.191172, "strain": {"value": "PP_006W0W8|ANDV-CH-LS-2022|Switzerland/2022-XX-XX"}, "accession": "PP_006W0W8", "author": {"author": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N.", "value": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Switzerland"}, "date": {"value": "2022-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-02"}, "PPX_accession": {"value": "PP_006W0W8.1", "url": "https://pathoplexus.org/seq/PP_006W0W8.1"}, "abbr_authors": {"value": "Zuest et al."}, "INSDC_accession": {"value": "OR405521.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR405521.1"}, "institution": {"value": "Spiez Laboratory, Biology Department"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "Europe"}, "host": {"value": "human"}, "length": {"value": 3425}}, "branch_attrs": {"mutations": {"nuc": ["G844A", "A2279G"], "GPC": ["E265K", "Q743R"], "Gc": ["Q92R"], "Gn": ["E265K"]}, "labels": {"aa": "GPC: E265K, Q743R; Gc: Q92R; Gn: E265K"}}}]}]}]}]}]}, {"name": "NODE_0000068", "node_attrs": {"div": 0.177513, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C315T", "A381G", "A391G", "T414C", "C489T", "A645G", "G714A", "C849T", "C1515A", "G1596A", "C1905T", "A2622G", "T2898C", "C2964T", "A3117G", "C3210T", "T3214A", "G3430A"], "GPC": ["I114V", "S1055A", "V1127I"], "Gc": ["S404A", "V476I"], "Gn": ["I114V"]}, "labels": {"aa": "GPC: I114V, S1055A, V1127I; Gc: S404A, V476I; Gn: I114V"}}, "children": [{"name": "NODE_0000069", "node_attrs": {"div": 0.185684, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G45A", "T90C", "T312C", "A339C", "A393G", "G507A", "T987C", "G1122A", "A1395G", "T1440C", "A1476G", "T1521C", "G1626A", "G1692A", "T1791C", "A1797G", "G1857A", "T1989C", "G2193A", "A2325G", "G2550A", "C2649T", "A2760T", "T2784C", "G2871A", "A2931G", "G3162A", "C3213T", "A3315C", "T3571G"], "GPC": ["A1055T"], "Gc": ["A404T"]}, "labels": {"aa": "GPC: A1055T; Gc: A404T"}}, "children": [{"name": "NODE_0000070", "node_attrs": {"div": 0.190083, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C363T", "T372C", "C454T", "G628A", "C643T", "G1209A", "G1338A", "A1359G", "C1488A", "C1644T", "C1668T", "G1968A", "A2727T", "A2913G", "G3493T", "T3496C"], "GPC": ["A193T"], "Gn": ["A193T"]}, "labels": {"aa": "GPC: A193T; Gn: A193T"}}, "children": [{"name": "PP_006VZ5U|NRC-4/18_06/01/2018|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.190376, "strain": {"value": "PP_006VZ5U|NRC-4/18_06/01/2018|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ5U", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ5U.1", "url": "https://pathoplexus.org/seq/PP_006VZ5U.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258192.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258192.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3658}}, "branch_attrs": {"mutations": {"nuc": ["A3031G"], "GPC": ["T994A"], "Gc": ["T343A"]}, "labels": {"aa": "GPC: T994A; Gc: T343A"}}}, {"name": "PP_006VZ4W|NRC-3/18_06/01/1997|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.190085, "strain": {"value": "PP_006VZ4W|NRC-3/18_06/01/1997|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ4W", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "PPX_accession": {"value": "PP_006VZ4W.1", "url": "https://pathoplexus.org/seq/PP_006VZ4W.1"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258191.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258191.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3655}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000071", "node_attrs": {"div": 0.19129, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {"nuc": ["A651G", "T663C", "T675C", "G1071A", "C1150T", "G1164A", "G1167A", "G1230A", "C1598T", "A1764G", "C2286T", "T2412C", "C2419T", "A2541G", "C2614T", "T2697C", "A2925G", "A3075G", "T3156A", "C3426T", "C3477T", "T3483C", "A3497G", "T3500C"], "GPC": ["T516I"], "Gn": ["T516I"]}, "labels": {"aa": "GPC: T516I; Gn: T516I", "outbreak": "2026-Hondius"}}, "children": [{"name": "NODE_0000072", "node_attrs": {"div": 0.191292, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W6RC|PP_006W6RC|Netherlands/2026-05-03", "node_attrs": {"div": 0.191294, "strain": {"value": "PP_006W6RC|PP_006W6RC|Netherlands/2026-05-03"}, "accession": "PP_006W6RC", "author": {"author": "Diagne, Moussa Moise; Sankhe, Safietou; Ndiaye, Ndeye Awa; Kane, Mouhamed; Diop, Seynabou M. B. S.; Seye, Seynabou; Fall, Gamou", "value": "Diagne, Moussa Moise; Sankhe, Safietou; Ndiaye, Ndeye Awa; Kane, Mouhamed; Diop, Seynabou M. B. S.; Seye, Seynabou; Fall, Gamou"}, "outbreak": {"value": "2026-Hondius"}, "country": {"value": "Netherlands"}, "date": {"value": "2026-05-03"}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-11"}, "PPX_accession": {"value": "PP_006W6RC.2", "url": "https://pathoplexus.org/seq/PP_006W6RC.2"}, "abbr_authors": {"value": "Diagne et al."}, "institution": {"value": "Institut Pasteur de Dakar"}, "restrictedUntil": {"value": "2027-05-11"}, "region": {"value": "Europe"}, "host": {"value": "human"}, "length": {"value": 3633}}, "branch_attrs": {"mutations": {"nuc": ["C3500T"]}}}, {"name": "PP_006WBLH|ANDV/Switzerland/Hu-3337/2026|Switzerland/2026-05-04", "node_attrs": {"div": 0.191294, "strain": {"value": "PP_006WBLH|ANDV/Switzerland/Hu-3337/2026|Switzerland/2026-05-04"}, "accession": "PP_006WBLH", "author": {"author": "Bloemberg, G.; Chudzinski, V.; Cordey, S.; Huber, M.; Laubscher, F.; Perez-Rodriguez, F.-J.; Pichler, I.; Schibler, M.; Thomasson, V.; Ziltener, G.", "value": "Bloemberg, G.; Chudzinski, V.; Cordey, S.; Huber, M.; Laubscher, F.; Perez-Rodriguez, F.-J.; Pichler, I.; Schibler, M.; Thomasson, V.; Ziltener, G."}, "outbreak": {"value": "2026-Hondius"}, "country": {"value": "Switzerland"}, "date": {"value": "2026-05-04"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-11"}, "PPX_accession": {"value": "PP_006WBLH.1", "url": "https://pathoplexus.org/seq/PP_006WBLH.1"}, "abbr_authors": {"value": "Bloemberg et al."}, "INSDC_accession": {"value": "PZ385162.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PZ385162.1"}, "institution": {"value": "University Hospitals of Geneva, Laboratory of Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "Europe"}, "host": {"value": "human"}, "length": {"value": 3649}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000073", "node_attrs": {"div": 0.19133, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {"nuc": ["A45G", "T46C", "T48C", "A49-", "A50-", "A51-", "A52-", "T3651C"]}}, "children": [{"name": "PP_006WDJK|PP_006WDJK|South Africa/2026-05-02", "node_attrs": {"div": 0.191332, "strain": {"value": "PP_006WDJK|PP_006WDJK|South Africa/2026-05-02"}, "accession": "PP_006WDJK", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "outbreak": {"value": "2026-Hondius"}, "country": {"value": "South Africa"}, "date": {"value": "2026-05-02"}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-12"}, "PPX_accession": {"value": "PP_006WDJK.1", "url": "https://pathoplexus.org/seq/PP_006WDJK.1"}, "abbr_authors": {"value": "Weyer et al."}, "institution": {"value": "National Institute of Communicable Diseases"}, "restrictedUntil": {"value": "2027-05-12"}, "region": {"value": "Africa"}, "host": {"value": "human"}, "length": {"value": 3603}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000074", "node_attrs": {"div": 0.191384, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006WANE|PP_006WANE|South Africa/2026-05-02", "node_attrs": {"div": 0.191387, "strain": {"value": "PP_006WANE|PP_006WANE|South Africa/2026-05-02"}, "accession": "PP_006WANE", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "outbreak": {"value": "2026-Hondius"}, "country": {"value": "South Africa"}, "date": {"value": "2026-05-02"}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-11"}, "PPX_accession": {"value": "PP_006WANE.2", "url": "https://pathoplexus.org/seq/PP_006WANE.2"}, "abbr_authors": {"value": "Weyer et al."}, "institution": {"value": "National Institute of Communicable Diseases"}, "restrictedUntil": {"value": "2027-05-11"}, "region": {"value": "Africa"}, "host": {"value": "human"}, "length": {"value": 3603}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000075", "node_attrs": {"div": 0.191491, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {"nuc": ["G45A", "C46T", "C48T", "-49A", "-50A", "-52G"], "GPC": ["M1V"], "Gn": ["M1V"]}, "labels": {"aa": "GPC: M1V; Gn: M1V"}}, "children": [{"name": "PP_006WDKH|PP_006WDKH|South Africa/2026-04-26", "node_attrs": {"div": 0.191582, "strain": {"value": "PP_006WDKH|PP_006WDKH|South Africa/2026-04-26"}, "accession": "PP_006WDKH", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "outbreak": {"value": "2026-Hondius"}, "country": {"value": "South Africa"}, "date": {"value": "2026-04-26"}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-12"}, "PPX_accession": {"value": "PP_006WDKH.1", "url": "https://pathoplexus.org/seq/PP_006WDKH.1"}, "abbr_authors": {"value": "Weyer et al."}, "institution": {"value": "National Institute of Communicable Diseases"}, "restrictedUntil": {"value": "2027-05-12"}, "region": {"value": "Africa"}, "host": {"value": "human"}, "length": {"value": 3623}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W3U9|PP_006W3U9|Netherlands/2026-05-06", "node_attrs": {"div": 0.191493, "strain": {"value": "PP_006W3U9|PP_006W3U9|Netherlands/2026-05-06"}, "accession": "PP_006W3U9", "author": {"author": "Oude Munnink, B. B.; Nieuwenhuijsse, D.; van der Boom, S.; Zaeck, L.; Boter, M.; Cassidy, H.; Schuele, L.; Molenkamp, R.; van der Eijk, A.; GeurtsvanKessel, C.; Koopmans, M.", "value": "Oude Munnink, B. B.; Nieuwenhuijsse, D.; van der Boom, S.; Zaeck, L.; Boter, M.; Cassidy, H.; Schuele, L.; Molenkamp, R.; van der Eijk, A.; GeurtsvanKessel, C.; Koopmans, M."}, "outbreak": {"value": "2026-Hondius"}, "country": {"value": "Netherlands"}, "date": {"value": "2026-05-06"}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2026-05-10"}, "PPX_accession": {"value": "PP_006W3U9.1", "url": "https://pathoplexus.org/seq/PP_006W3U9.1"}, "abbr_authors": {"value": "Oude Munnink et al."}, "institution": {"value": "ErasmusMC"}, "restrictedUntil": {"value": "2027-05-10"}, "region": {"value": "Europe"}, "host": {"value": "human"}, "length": {"value": 3561}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}, {"name": "NODE_0000076", "node_attrs": {"div": 0.183567, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C285T", "A513G", "T531C", "C570T", "C721T", "A723G", "T912C", "C1257T", "A1719G", "A1785G", "C1827T", "A1938G", "A2094G", "A2142G", "T2163C", "T2697C", "C3123T", "A3150G", "T3159C", "A3214G", "C3477T", "A3482G", "T3490A"]}}, "children": [{"name": "NODE_0000077", "node_attrs": {"div": 0.189437, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C363T", "G564A", "A576G", "G783A", "G900A", "C1014T", "C1197T", "A1311G", "A1737G", "G1878A", "T2028C", "T2172C", "A2469G", "T2598C", "G2895A", "A2913C", "T3030C", "C3042T", "G3054A", "C3213T"]}}, "children": [{"name": "PP_006W2JW|CHI-Hu13724_P1|Chile/2024-07-24", "node_attrs": {"div": 0.189438, "strain": {"value": "PP_006W2JW|CHI-Hu13724_P1|Chile/2024-07-24"}, "accession": "PP_006W2JW", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Chile"}, "date": {"value": "2024-07-24"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "PPX_accession": {"value": "PP_006W2JW.1", "url": "https://pathoplexus.org/seq/PP_006W2JW.1"}, "abbr_authors": {"value": "Barrera et al."}, "INSDC_accession": {"value": "PV808474.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808474.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3664}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000078", "node_attrs": {"div": 0.189438, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2KU|CHI-Hu13724_P2|Chile/2024-07-30", "node_attrs": {"div": 0.189438, "strain": {"value": "PP_006W2KU|CHI-Hu13724_P2|Chile/2024-07-30"}, "accession": "PP_006W2KU", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Chile"}, "date": {"value": "2024-07-30"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "PPX_accession": {"value": "PP_006W2KU.1", "url": "https://pathoplexus.org/seq/PP_006W2KU.1"}, "abbr_authors": {"value": "Barrera et al."}, "INSDC_accession": {"value": "PV808477.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808477.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3659}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000079", "node_attrs": {"div": 0.189438, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2G1|137|Chile/2024-06-27", "node_attrs": {"div": 0.189438, "strain": {"value": "PP_006W2G1|137|Chile/2024-06-27"}, "accession": "PP_006W2G1", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Chile"}, "date": {"value": "2024-06-27"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "PPX_accession": {"value": "PP_006W2G1.1", "url": "https://pathoplexus.org/seq/PP_006W2G1.1"}, "abbr_authors": {"value": "Barrera et al."}, "division": {"value": "Los Rios CL"}, "INSDC_accession": {"value": "PV808468.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808468.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3654}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W2F3|136|Chile/2024-06-27", "node_attrs": {"div": 0.189438, "strain": {"value": "PP_006W2F3|136|Chile/2024-06-27"}, "accession": "PP_006W2F3", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Chile"}, "date": {"value": "2024-06-27"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2025-11-04"}, "PPX_accession": {"value": "PP_006W2F3.1", "url": "https://pathoplexus.org/seq/PP_006W2F3.1"}, "abbr_authors": {"value": "Barrera et al."}, "division": {"value": "Los Rios CL"}, "INSDC_accession": {"value": "PV796317.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV796317.1"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "human"}, "length": {"value": 3657}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000080", "node_attrs": {"div": 0.184456, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G927A", "T1473G", "A2727G"]}}, "children": [{"name": "PP_006W0SG|Andes/ARG_p19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.184748, "strain": {"value": "PP_006W0SG|Andes/ARG_p19|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0SG", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "PPX_accession": {"value": "PP_006W0SG.1", "url": "https://pathoplexus.org/seq/PP_006W0SG.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555727.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555727.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "length": {"value": 3660}}, "branch_attrs": {"mutations": {"nuc": ["T340C"], "GPC": ["S97P"], "Gn": ["S97P"]}, "labels": {"aa": "GPC: S97P; Gn: S97P"}}}, {"name": "NODE_0000081", "node_attrs": {"div": 0.184459, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0PN|Andes/ARG-O.l.444|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.184461, "strain": {"value": "PP_006W0PN|Andes/ARG-O.l.444|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0PN", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "PPX_accession": {"value": "PP_006W0PN.1", "url": "https://pathoplexus.org/seq/PP_006W0PN.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555724.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555724.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "mice and others"}, "length": {"value": 3555}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000082", "node_attrs": {"div": 0.184461, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0TE|Andes/ARG-M.a.|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.184463, "strain": {"value": "PP_006W0TE|Andes/ARG-M.a.|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0TE", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "PPX_accession": {"value": "PP_006W0TE.1", "url": "https://pathoplexus.org/seq/PP_006W0TE.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555729.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555729.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "Syrian golden hamster; Syrian golden hamsters; Syrian hamster; golden hamster"}, "length": {"value": 3651}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000083", "node_attrs": {"div": 0.184463, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0RJ|Andes/ARG_p9|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.184463, "strain": {"value": "PP_006W0RJ|Andes/ARG_p9|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0RJ", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "PPX_accession": {"value": "PP_006W0RJ.1", "url": "https://pathoplexus.org/seq/PP_006W0RJ.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555726.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555726.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "length": {"value": 3661}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0QL|Andes/ARG_p3|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.184463, "strain": {"value": "PP_006W0QL|Andes/ARG_p3|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0QL", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2023-10-10"}, "PPX_accession": {"value": "PP_006W0QL.1", "url": "https://pathoplexus.org/seq/PP_006W0QL.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "OP555725.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555725.1"}, "institution": {"value": "Malbran Institute, Virology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "length": {"value": 3652}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}, {"name": "NODE_0000084", "node_attrs": {"div": 0.181503, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T190C", "T231C", "T243C", "C345T", "C363T", "T447C", "C570T", "T675C", "G681T", "G720A", "G900A", "A918G", "G936A", "C1032T", "G1071A", "C1197T", "G1206A", "G1209A", "C1251A", "C1266T", "A1300C", "A1302T", "C1353T", "A1491G", "C1539T", "A1563C", "A1581G", "G1671A", "C1755T", "T2077C", "A2085G", "T2115C", "C2121T", "G2205A", "A2217G", "A2325G", "G2388A", "A2433G", "A2502T", "G2550A", "G2628A", "C2634T", "C2733T", "T2910C", "G3060A", "T3093A", "T3180C", "C3273T", "C3333T", "C3433T", "C3438T"]}}, "children": [{"name": "PP_006W0AF|ARCH14/NRC1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.200966, "strain": {"value": "PP_006W0AF|ARCH14/NRC1|nan/XXXX-XX-XX"}, "accession": "PP_006W0AF", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-03-31"}, "PPX_accession": {"value": "PP_006W0AF.1", "url": "https://pathoplexus.org/seq/PP_006W0AF.1"}, "abbr_authors": {"value": "Alonso et al."}, "INSDC_accession": {"value": "MN850091.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850091.1"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3643}}, "branch_attrs": {"mutations": {"nuc": ["G45A", "C111T", "A132G", "G153A", "T219A", "C288A", "A366G", "C454T", "C493T", "A582G", "T597C", "C660T", "C678T", "G714A", "T804C", "A948G", "T951G", "C1134T", "T1263C", "T1356C", "A1359G", "C1365T", "T1422C", "A1494G", "A1569G", "C1585T", "T1620C", "T1635C", "A1731G", "C1827T", "G1881A", "A1893G", "A1932G", "G1971A", "C1995T", "T2091C", "G2157A", "C2316T", "A2343G", "T2358C", "T2364G", "C2367T", "A2373G", "C2419T", "A2479C", "T2610C", "C2631T", "C2685T", "A2727G", "T2775C", "T2793A", "C2916T", "C2964T", "C3038A", "A3075G", "G3081A", "T3102C", "G3147C", "G3177A", "A3189G", "T3198C", "T3222C", "C3330T", "A3363G", "G3369A", "C3411T", "A3501C", "C3532T", "T3544C", "A3547G", "T3549C", "A3556G", "T3563G", "A3567G", "G3569A", "C3582T"], "GPC": ["I810L", "T996N"], "Gc": ["I159L", "T345N"]}, "labels": {"aa": "GPC: I810L, T996N; Gc: I159L, T345N"}}}, {"name": "NODE_0000085", "node_attrs": {"div": 0.206742, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C74T", "A114G", "T174C", "G192A", "G264A", "A339G", "G360A", "C387T", "T394C", "T408C", "C462T", "G468A", "G507A", "C508T", "T525A", "C643T", "A651G", "G747A", "A756G", "A771G", "A786G", "A837G", "C841T", "C870T", "T912C", "G927A", "T931C", "A1087G", "T1109C", "C1224T", "G1317A", "G1374A", "C1468T", "A1470G", "G1503A", "A1560G", "A1599G", "G1660A", "T1695C", "G1728A", "A1749G", "T1758C", "C1770T", "A1863G", "G1878A", "T1914C", "C1924A", "C1929T", "T2028C", "A2040G", "A2079C", "T2145C", "G2151A", "T2215C", "A2235G", "T2391C", "T2412C", "G2430T", "C2463T", "C2478T", "A2535G", "C2553T", "T2574A", "C2580T", "A2640G", "T2697C", "A2718G", "T2745C", "C2754T", "T2868C", "T2883C", "T2937C", "T2977C", "T3030C", "G3118A", "G3162A", "T3168C", "G3219A", "C3223T", "A3240T", "A3252G", "C3261A", "A3450G", "A3474G", "A3482C", "T3496C", "T3515C", "T3516C", "A3645C"], "GPC": ["A8V", "Y294H", "I346V", "I353T", "V537I", "A1023T"], "Gc": ["A372T"], "Gn": ["A8V", "Y294H", "I346V", "I353T", "V537I"]}, "labels": {"aa": "GPC: A8V, Y294H, I346V, I353T, V537I, A1023T; Gc: A372T; Gn: A8V, Y294H, I346V, I353T, V537I"}}, "children": [{"name": "NODE_0000086", "node_attrs": {"div": 0.207328, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C2539T", "A3265G"], "GPC": ["P830S", "N1072D"], "Gc": ["P179S", "N421D"]}, "labels": {"aa": "GPC: P830S, N1072D; Gc: P179S, N421D"}}, "children": [{"name": "PP_006VYY8|ANDV/Oligoryzomys longicaudatus/CHL/9717869_08/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207621, "strain": {"value": "PP_006VYY8|ANDV/Oligoryzomys longicaudatus/CHL/9717869_08/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYY8", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYY8.1", "url": "https://pathoplexus.org/seq/PP_006VYY8.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095819.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095819.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["G69A"]}}}, {"name": "NODE_0000087", "node_attrs": {"div": 0.20733, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYJ2|ANDV/Oligoryzomys longicaudatus/CHL/9717869_09/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207332, "strain": {"value": "PP_006VYJ2|ANDV/Oligoryzomys longicaudatus/CHL/9717869_09/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYJ2", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYJ2.1", "url": "https://pathoplexus.org/seq/PP_006VYJ2.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095805.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095805.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VYPS|ANDV/Oligoryzomys longicaudatus/CHL/9717869_07/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207332, "strain": {"value": "PP_006VYPS|ANDV/Oligoryzomys longicaudatus/CHL/9717869_07/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYPS", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYPS.1", "url": "https://pathoplexus.org/seq/PP_006VYPS.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095810.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095810.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000088", "node_attrs": {"div": 0.206744, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000089", "node_attrs": {"div": 0.206745, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VVUK|PP_006VVUK|nan/XXXX-XX-XX", "node_attrs": {"div": 0.206746, "strain": {"value": "PP_006VVUK|PP_006VVUK|nan/XXXX-XX-XX"}, "accession": "PP_006VVUK", "author": {"author": "Nguyen, S. H.; Pichuantes, S.", "value": "Nguyen, S. H.; Pichuantes, S."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2013-02-13"}, "PPX_accession": {"value": "PP_006VVUK.1", "url": "https://pathoplexus.org/seq/PP_006VVUK.1"}, "abbr_authors": {"value": "Nguyen et al."}, "INSDC_accession": {"value": "HV984408.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/HV984408.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3671}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000090", "node_attrs": {"div": 0.206746, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0E7|Chile-9717869|nan/XXXX-XX-XX", "node_attrs": {"div": 0.206746, "strain": {"value": "PP_006W0E7|Chile-9717869|nan/XXXX-XX-XX"}, "accession": "PP_006W0E7", "author": {"author": "Bohlman, M. C.; Borucki, M.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; St Jeor, S.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B.", "value": "Bohlman, M. C.; Borucki, M.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; St Jeor, S.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2000-10-10"}, "PPX_accession": {"value": "PP_006W0E7.1", "url": "https://pathoplexus.org/seq/PP_006W0E7.1"}, "abbr_authors": {"value": "Bohlman et al."}, "INSDC_accession": {"value": "NC_003467.2", "url": "https://www.ncbi.nlm.nih.gov/nuccore/NC_003467.2"}, "institution": {"value": "National Center for Biotechnology Information, NIH"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3671}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000091", "node_attrs": {"div": 0.206746, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VQN2|PP_006VQN2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.206746, "strain": {"value": "PP_006VQN2|PP_006VQN2|nan/XXXX-XX-XX"}, "accession": "PP_006VQN2", "author": {"author": "Pichuantesu, S.; Nguyen, S. H.", "value": "Pichuantesu, S.; Nguyen, S. H."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2008-09-26"}, "PPX_accession": {"value": "PP_006VQN2.1", "url": "https://pathoplexus.org/seq/PP_006VQN2.1"}, "abbr_authors": {"value": "Pichuantesu et al."}, "INSDC_accession": {"value": "DL139691.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/DL139691.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3671}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000092", "node_attrs": {"div": 0.206746, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0D9|Chile-9717869|Chile/1997-XX-XX", "node_attrs": {"div": 0.206746, "strain": {"value": "PP_006W0D9|Chile-9717869|Chile/1997-XX-XX"}, "accession": "PP_006W0D9", "author": {"author": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D.", "value": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D."}, "outbreak": {"value": "unassigned"}, "country": {"value": "Chile"}, "date": {"value": "1997-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2021-02-27"}, "PPX_accession": {"value": "PP_006W0D9.1", "url": "https://pathoplexus.org/seq/PP_006W0D9.1"}, "abbr_authors": {"value": "Warner et al."}, "INSDC_accession": {"value": "MT956623.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MT956623.1"}, "institution": {"value": "Public Health Agency of Canada, Special Pathogens"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "region": {"value": "South America"}, "host": {"value": "mice and others"}, "length": {"value": 3671}}, "branch_attrs": {"mutations": {"nuc": ["C3645A", "C3662T", "A3671T"]}}}, {"name": "NODE_0000093", "node_attrs": {"div": 0.206746, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VQYG|PP_006VQYG|nan/XXXX-XX-XX", "node_attrs": {"div": 0.206746, "strain": {"value": "PP_006VQYG|PP_006VQYG|nan/XXXX-XX-XX"}, "accession": "PP_006VQYG", "author": {"author": "Nguyen, S. H.; Pichuantes, S.", "value": "Nguyen, S. H.; Pichuantes, S."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2008-02-21"}, "PPX_accession": {"value": "PP_006VQYG.1", "url": "https://pathoplexus.org/seq/PP_006VQYG.1"}, "abbr_authors": {"value": "Nguyen et al."}, "INSDC_accession": {"value": "DI161196.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/DI161196.1"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3671}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VNZG|Chile-9717869|nan/XXXX-XX-XX", "node_attrs": {"div": 0.206746, "strain": {"value": "PP_006VNZG|Chile-9717869|nan/XXXX-XX-XX"}, "accession": "PP_006VNZG", "author": {"author": "Bohlman, M. C.; Borucki, M. K.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; Rowe, J. E.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B.", "value": "Bohlman, M. C.; Borucki, M. K.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; Rowe, J. E.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2000-10-10"}, "PPX_accession": {"value": "PP_006VNZG.1", "url": "https://pathoplexus.org/seq/PP_006VNZG.1"}, "abbr_authors": {"value": "Bohlman et al."}, "INSDC_accession": {"value": "AF291703.2", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF291703.2"}, "institution": {"value": "University of Nevada-Reno, Microbiology"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3671}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}, {"name": "NODE_0000094", "node_attrs": {"div": 0.206747, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000095", "node_attrs": {"div": 0.206749, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000096", "node_attrs": {"div": 0.207041, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C2543A"], "GPC": ["S831Y"], "Gc": ["S180Y"]}, "labels": {"aa": "GPC: S831Y; Gc: S180Y"}}, "children": [{"name": "PP_006VYK0|ANDV/Oligoryzomys longicaudatus/CHL/9717869_06/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207627, "strain": {"value": "PP_006VYK0|ANDV/Oligoryzomys longicaudatus/CHL/9717869_06/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYK0", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYK0.1", "url": "https://pathoplexus.org/seq/PP_006VYK0.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095806.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095806.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["C1097A", "A1834G"], "GPC": ["S349Y", "K595E"], "Gn": ["S349Y", "K595E"]}, "labels": {"aa": "GPC: S349Y, K595E; Gn: S349Y, K595E"}}}, {"name": "NODE_0000097", "node_attrs": {"div": 0.207334, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A828G"]}}, "children": [{"name": "PP_006VYXA|ANDV/Oligoryzomys longicaudatus/CHL/9717869_05/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207335, "strain": {"value": "PP_006VYXA|ANDV/Oligoryzomys longicaudatus/CHL/9717869_05/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYXA", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYXA.1", "url": "https://pathoplexus.org/seq/PP_006VYXA.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095818.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095818.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VYTJ|ANDV/Oligoryzomys longicaudatus/CHL/9717869_04/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207335, "strain": {"value": "PP_006VYTJ|ANDV/Oligoryzomys longicaudatus/CHL/9717869_04/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYTJ", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYTJ.1", "url": "https://pathoplexus.org/seq/PP_006VYTJ.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095814.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095814.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3418}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000098", "node_attrs": {"div": 0.206751, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000099", "node_attrs": {"div": 0.207043, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A725G"], "GPC": ["K225R"], "Gn": ["K225R"]}, "labels": {"aa": "GPC: K225R; Gn: K225R"}}, "children": [{"name": "PP_006VYG7|ANDV/Oligoryzomys longicaudatus/CHL/9717869_13/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207336, "strain": {"value": "PP_006VYG7|ANDV/Oligoryzomys longicaudatus/CHL/9717869_13/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYG7", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYG7.1", "url": "https://pathoplexus.org/seq/PP_006VYG7.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095803.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095803.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3418}}, "branch_attrs": {"mutations": {"nuc": ["G1165A"], "GPC": ["E372K"], "Gn": ["E372K"]}, "labels": {"aa": "GPC: E372K; Gn: E372K"}}}, {"name": "NODE_0000100", "node_attrs": {"div": 0.207046, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYDD|ANDV/Oligoryzomys longicaudatus/CHL/9717869_15/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207338, "strain": {"value": "PP_006VYDD|ANDV/Oligoryzomys longicaudatus/CHL/9717869_15/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYDD", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYDD.1", "url": "https://pathoplexus.org/seq/PP_006VYDD.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095800.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095800.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3418}}, "branch_attrs": {"mutations": {"nuc": ["A1748G"], "GPC": ["Q566R"], "Gn": ["Q566R"]}, "labels": {"aa": "GPC: Q566R; Gn: Q566R"}}}, {"name": "PP_006VYCF|ANDV/Oligoryzomys longicaudatus/CHL/9717869_14/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207924, "strain": {"value": "PP_006VYCF|ANDV/Oligoryzomys longicaudatus/CHL/9717869_14/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYCF", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYCF.1", "url": "https://pathoplexus.org/seq/PP_006VYCF.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095799.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095799.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["A1657G", "A2016G", "A3303G"], "GPC": ["K536E"], "Gn": ["K536E"]}, "labels": {"aa": "GPC: K536E; Gn: K536E"}}}]}]}, {"name": "NODE_0000101", "node_attrs": {"div": 0.207337, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C375A", "T1666G"], "GPC": ["N108K", "Y539D"], "Gn": ["N108K", "Y539D"]}, "labels": {"aa": "GPC: N108K, Y539D; Gn: N108K, Y539D"}}, "children": [{"name": "PP_006VXZ7|ANDV/Oligoryzomys longicaudatus/CHL/9717869_02/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207338, "strain": {"value": "PP_006VXZ7|ANDV/Oligoryzomys longicaudatus/CHL/9717869_02/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXZ7", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VXZ7.1", "url": "https://pathoplexus.org/seq/PP_006VXZ7.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513888.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513888.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000102", "node_attrs": {"div": 0.207338, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VY8P|ANDV/Oligoryzomys longicaudatus/CHL/9717869_03/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207338, "strain": {"value": "PP_006VY8P|ANDV/Oligoryzomys longicaudatus/CHL/9717869_03/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY8P", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY8P.1", "url": "https://pathoplexus.org/seq/PP_006VY8P.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513897.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513897.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VXTK|ANDV/Oligoryzomys longicaudatus/CHL/9717869_01/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207338, "strain": {"value": "PP_006VXTK|ANDV/Oligoryzomys longicaudatus/CHL/9717869_01/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXTK", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXTK.1", "url": "https://pathoplexus.org/seq/PP_006VXTK.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK059788.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059788.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3418}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000103", "node_attrs": {"div": 0.206749, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYEB|ANDV/Oligoryzomys longicaudatus/CHL/9717869_01/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.20675, "strain": {"value": "PP_006VYEB|ANDV/Oligoryzomys longicaudatus/CHL/9717869_01/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYEB", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYEB.1", "url": "https://pathoplexus.org/seq/PP_006VYEB.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095801.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095801.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000104", "node_attrs": {"div": 0.206751, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000105", "node_attrs": {"div": 0.206753, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ04|ANDV/Oligoryzomys longicaudatus/CHL/9717869_03/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207046, "strain": {"value": "PP_006VZ04|ANDV/Oligoryzomys longicaudatus/CHL/9717869_03/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VZ04", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VZ04.1", "url": "https://pathoplexus.org/seq/PP_006VZ04.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095821.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095821.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["G1223T"], "GPC": ["S391I"], "Gn": ["S391I"]}, "labels": {"aa": "GPC: S391I; Gn: S391I"}}}, {"name": "NODE_0000106", "node_attrs": {"div": 0.207046, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T1646C"], "GPC": ["L532P"], "Gn": ["L532P"]}, "labels": {"aa": "GPC: L532P; Gn: L532P"}}, "children": [{"name": "PP_006VXPT|ANDV/Oligoryzomys longicaudatus/CHL/9717869_16/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207047, "strain": {"value": "PP_006VXPT|ANDV/Oligoryzomys longicaudatus/CHL/9717869_16/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXPT", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXPT.1", "url": "https://pathoplexus.org/seq/PP_006VXPT.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK059784.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059784.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000107", "node_attrs": {"div": 0.207047, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VY7R|ANDV/Oligoryzomys longicaudatus/CHL/9717869_37/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207047, "strain": {"value": "PP_006VY7R|ANDV/Oligoryzomys longicaudatus/CHL/9717869_37/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY7R", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY7R.1", "url": "https://pathoplexus.org/seq/PP_006VY7R.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513896.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513896.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000108", "node_attrs": {"div": 0.207047, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VY6T|ANDV/Oligoryzomys longicaudatus/CHL/9717869_17/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207047, "strain": {"value": "PP_006VY6T|ANDV/Oligoryzomys longicaudatus/CHL/9717869_17/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY6T", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY6T.1", "url": "https://pathoplexus.org/seq/PP_006VY6T.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513895.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513895.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000109", "node_attrs": {"div": 0.207047, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYAK|ANDV/Oligoryzomys longicaudatus/CHL/9717869_38/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207047, "strain": {"value": "PP_006VYAK|ANDV/Oligoryzomys longicaudatus/CHL/9717869_38/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYAK", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VYAK.1", "url": "https://pathoplexus.org/seq/PP_006VYAK.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513899.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513899.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VY05|ANDV/Oligoryzomys longicaudatus/CHL/9717869_18/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207047, "strain": {"value": "PP_006VY05|ANDV/Oligoryzomys longicaudatus/CHL/9717869_18/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY05", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY05.1", "url": "https://pathoplexus.org/seq/PP_006VY05.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513889.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513889.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}, {"name": "NODE_0000110", "node_attrs": {"div": 0.206754, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000111", "node_attrs": {"div": 0.207047, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A413G"], "GPC": ["D121G"], "Gn": ["D121G"]}, "labels": {"aa": "GPC: D121G; Gn: D121G"}}, "children": [{"name": "PP_006VXSM|ANDV/Oligoryzomys longicaudatus/CHL/9717869_09/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207633, "strain": {"value": "PP_006VXSM|ANDV/Oligoryzomys longicaudatus/CHL/9717869_09/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXSM", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXSM.1", "url": "https://pathoplexus.org/seq/PP_006VXSM.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK059787.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059787.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["T1603C", "A3445T"], "GPC": ["S518P", "R1132*"], "Gc": ["R481*"], "Gn": ["S518P"]}, "labels": {"aa": "GPC: S518P, R1132*; Gc: R481*; Gn: S518P"}}}, {"name": "NODE_0000112", "node_attrs": {"div": 0.207049, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VY21|ANDV/Oligoryzomys longicaudatus/CHL/9717869_07/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207052, "strain": {"value": "PP_006VY21|ANDV/Oligoryzomys longicaudatus/CHL/9717869_07/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY21", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY21.1", "url": "https://pathoplexus.org/seq/PP_006VY21.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513891.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513891.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VXVF|ANDV/Oligoryzomys longicaudatus/CHL/9717869_08/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207341, "strain": {"value": "PP_006VXVF|ANDV/Oligoryzomys longicaudatus/CHL/9717869_08/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXVF", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXVF.1", "url": "https://pathoplexus.org/seq/PP_006VXVF.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK059790.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059790.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["T1752G"], "GPC": ["S567R"], "Gn": ["S567R"]}, "labels": {"aa": "GPC: S567R; Gn: S567R"}}}]}]}, {"name": "NODE_0000113", "node_attrs": {"div": 0.206756, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000114", "node_attrs": {"div": 0.207342, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A2866G", "G3437T"], "GPC": ["N939D", "C1129F"], "Gc": ["N288D", "C478F"]}, "labels": {"aa": "GPC: N939D, C1129F; Gc: N288D, C478F"}}, "children": [{"name": "NODE_0000115", "node_attrs": {"div": 0.207635, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A738G"]}}, "children": [{"name": "PP_006VZ12|ANDV/Oligoryzomys longicaudatus/CHL/9717869_21/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.20822, "strain": {"value": "PP_006VZ12|ANDV/Oligoryzomys longicaudatus/CHL/9717869_21/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VZ12", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VZ12.1", "url": "https://pathoplexus.org/seq/PP_006VZ12.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095822.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095822.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["A2446G", "T2452A"], "GPC": ["I799V", "S801T"], "Gc": ["I148V", "S150T"]}, "labels": {"aa": "GPC: I799V, S801T; Gc: I148V, S150T"}}}, {"name": "PP_006VYZ6|ANDV/Oligoryzomys longicaudatus/CHL/9717869_19/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207637, "strain": {"value": "PP_006VYZ6|ANDV/Oligoryzomys longicaudatus/CHL/9717869_19/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYZ6", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYZ6.1", "url": "https://pathoplexus.org/seq/PP_006VYZ6.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095820.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095820.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000116", "node_attrs": {"div": 0.207344, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYNU|ANDV/Oligoryzomys longicaudatus/CHL/9717869_20/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207636, "strain": {"value": "PP_006VYNU|ANDV/Oligoryzomys longicaudatus/CHL/9717869_20/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYNU", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYNU.1", "url": "https://pathoplexus.org/seq/PP_006VYNU.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095809.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095809.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["G2708A"], "GPC": ["R886K"], "Gc": ["R235K"]}, "labels": {"aa": "GPC: R886K; Gc: R235K"}}}, {"name": "NODE_0000117", "node_attrs": {"div": 0.207637, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A2698C"], "GPC": ["S883R"], "Gc": ["S232R"]}, "labels": {"aa": "GPC: S883R; Gc: S232R"}}, "children": [{"name": "PP_006VYWC|ANDV/Oligoryzomys longicaudatus/CHL/9717869_16/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.20764, "strain": {"value": "PP_006VYWC|ANDV/Oligoryzomys longicaudatus/CHL/9717869_16/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYWC", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYWC.1", "url": "https://pathoplexus.org/seq/PP_006VYWC.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095817.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095817.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000118", "node_attrs": {"div": 0.207639, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYUG|ANDV/Oligoryzomys longicaudatus/CHL/9717869_18/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207932, "strain": {"value": "PP_006VYUG|ANDV/Oligoryzomys longicaudatus/CHL/9717869_18/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYUG", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYUG.1", "url": "https://pathoplexus.org/seq/PP_006VYUG.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095815.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095815.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["G439A"], "GPC": ["V130I"], "Gn": ["V130I"]}, "labels": {"aa": "GPC: V130I; Gn: V130I"}}}, {"name": "PP_006VYF9|ANDV/Oligoryzomys longicaudatus/CHL/9717869_17/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207932, "strain": {"value": "PP_006VYF9|ANDV/Oligoryzomys longicaudatus/CHL/9717869_17/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYF9", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYF9.1", "url": "https://pathoplexus.org/seq/PP_006VYF9.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095802.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095802.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["G1207A"], "GPC": ["A386T"], "Gn": ["A386T"]}, "labels": {"aa": "GPC: A386T; Gn: A386T"}}}]}]}]}]}, {"name": "NODE_0000119", "node_attrs": {"div": 0.207049, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T825C"]}}, "children": [{"name": "NODE_0000120", "node_attrs": {"div": 0.207634, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G2699T", "A2866G"], "GPC": ["S883I", "N939D"], "Gc": ["S232I", "N288D"]}, "labels": {"aa": "GPC: S883I, N939D; Gc: S232I, N288D"}}, "children": [{"name": "PP_006VYLY|ANDV/Oligoryzomys longicaudatus/CHL/9717869_24/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207927, "strain": {"value": "PP_006VYLY|ANDV/Oligoryzomys longicaudatus/CHL/9717869_24/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYLY", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYLY.1", "url": "https://pathoplexus.org/seq/PP_006VYLY.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095807.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095807.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["G2935A"], "GPC": ["V962I"], "Gc": ["V311I"]}, "labels": {"aa": "GPC: V962I; Gc: V311I"}}}, {"name": "NODE_0000121", "node_attrs": {"div": 0.207926, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G1682A"], "GPC": ["G544E"], "Gn": ["G544E"]}, "labels": {"aa": "GPC: G544E; Gn: G544E"}}, "children": [{"name": "PP_006VYSL|ANDV/Oligoryzomys longicaudatus/CHL/9717869_23/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207927, "strain": {"value": "PP_006VYSL|ANDV/Oligoryzomys longicaudatus/CHL/9717869_23/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYSL", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYSL.1", "url": "https://pathoplexus.org/seq/PP_006VYSL.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095813.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095813.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VYMW|ANDV/Oligoryzomys longicaudatus/CHL/9717869_22/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207927, "strain": {"value": "PP_006VYMW|ANDV/Oligoryzomys longicaudatus/CHL/9717869_22/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYMW", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYMW.1", "url": "https://pathoplexus.org/seq/PP_006VYMW.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095808.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095808.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000122", "node_attrs": {"div": 0.207052, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYH4|ANDV/Oligoryzomys longicaudatus/CHL/9717869_02/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207054, "strain": {"value": "PP_006VYH4|ANDV/Oligoryzomys longicaudatus/CHL/9717869_02/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYH4", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYH4.1", "url": "https://pathoplexus.org/seq/PP_006VYH4.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095804.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095804.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000123", "node_attrs": {"div": 0.207054, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000124", "node_attrs": {"div": 0.207346, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A413T"], "GPC": ["D121V"], "Gn": ["D121V"]}, "labels": {"aa": "GPC: D121V; Gn: D121V"}}, "children": [{"name": "PP_006VYVE|ANDV/Oligoryzomys longicaudatus/CHL/9717869_10/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207347, "strain": {"value": "PP_006VYVE|ANDV/Oligoryzomys longicaudatus/CHL/9717869_10/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYVE", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYVE.1", "url": "https://pathoplexus.org/seq/PP_006VYVE.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095816.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095816.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3418}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000125", "node_attrs": {"div": 0.207347, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYQQ|ANDV/Oligoryzomys longicaudatus/CHL/9717869_12/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207347, "strain": {"value": "PP_006VYQQ|ANDV/Oligoryzomys longicaudatus/CHL/9717869_12/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYQQ", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYQQ.1", "url": "https://pathoplexus.org/seq/PP_006VYQQ.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095811.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095811.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VYRN|ANDV/Oligoryzomys longicaudatus/CHL/9717869_11/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207347, "strain": {"value": "PP_006VYRN|ANDV/Oligoryzomys longicaudatus/CHL/9717869_11/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYRN", "author": {"author": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Fedorova, N.; Amedeo, P.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Cadiz, C.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-07-13"}, "PPX_accession": {"value": "PP_006VYRN.1", "url": "https://pathoplexus.org/seq/PP_006VYRN.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MN095812.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN095812.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000126", "node_attrs": {"div": 0.207639, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A1667C", "A1835C"], "GPC": ["Y539S", "K595T"], "Gn": ["Y539S", "K595T"]}, "labels": {"aa": "GPC: Y539S, K595T; Gn: Y539S, K595T"}}, "children": [{"name": "NODE_0000127", "node_attrs": {"div": 0.207931, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G423T"], "GPC": ["K124N"], "Gn": ["K124N"]}, "labels": {"aa": "GPC: K124N; Gn: K124N"}}, "children": [{"name": "PP_006VXRP|ANDV/Oligoryzomys longicaudatus/CHL/9717869_12/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.207932, "strain": {"value": "PP_006VXRP|ANDV/Oligoryzomys longicaudatus/CHL/9717869_12/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXRP", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXRP.1", "url": "https://pathoplexus.org/seq/PP_006VXRP.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK059786.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059786.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000128", "node_attrs": {"div": 0.208517, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A1878C", "C2537T"], "GPC": ["K609N", "T829I"], "Gc": ["T178I"], "Gn": ["K609N"]}, "labels": {"aa": "GPC: K609N, T829I; Gc: T178I; Gn: K609N"}}, "children": [{"name": "PP_006VY5V|ANDV/Oligoryzomys longicaudatus/CHL/9717869_45/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208518, "strain": {"value": "PP_006VY5V|ANDV/Oligoryzomys longicaudatus/CHL/9717869_45/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY5V", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY5V.1", "url": "https://pathoplexus.org/seq/PP_006VY5V.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513894.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513894.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000129", "node_attrs": {"div": 0.208518, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VY9M|ANDV/Oligoryzomys longicaudatus/CHL/9717869_44/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208518, "strain": {"value": "PP_006VY9M|ANDV/Oligoryzomys longicaudatus/CHL/9717869_44/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY9M", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY9M.1", "url": "https://pathoplexus.org/seq/PP_006VY9M.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513898.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513898.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VXNV|ANDV/Oligoryzomys longicaudatus/CHL/9717869_10/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208518, "strain": {"value": "PP_006VXNV|ANDV/Oligoryzomys longicaudatus/CHL/9717869_10/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXNV", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXNV.1", "url": "https://pathoplexus.org/seq/PP_006VXNV.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK059783.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059783.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000130", "node_attrs": {"div": 0.207641, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000131", "node_attrs": {"div": 0.20852, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C755A", "G2662T", "A3363C"], "GPC": ["T235K", "A871S", "L1104F"], "Gc": ["A220S", "L453F"], "Gn": ["T235K"]}, "labels": {"aa": "GPC: T235K, A871S, L1104F; Gc: A220S, L453F; Gn: T235K"}}, "children": [{"name": "PP_006VXWD|ANDV/Oligoryzomys longicaudatus/CHL/9717869_05/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208813, "strain": {"value": "PP_006VXWD|ANDV/Oligoryzomys longicaudatus/CHL/9717869_05/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXWD", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VXWD.1", "url": "https://pathoplexus.org/seq/PP_006VXWD.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513885.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513885.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["G3340T"], "GPC": ["G1097C"], "Gc": ["G446C"]}, "labels": {"aa": "GPC: G1097C; Gc: G446C"}}}, {"name": "NODE_0000132", "node_attrs": {"div": 0.208522, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VXXB|ANDV/Oligoryzomys longicaudatus/CHL/9717869_04/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208524, "strain": {"value": "PP_006VXXB|ANDV/Oligoryzomys longicaudatus/CHL/9717869_04/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXXB", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VXXB.1", "url": "https://pathoplexus.org/seq/PP_006VXXB.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513886.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513886.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VXUH|ANDV/Oligoryzomys longicaudatus/CHL/9717869_06/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208525, "strain": {"value": "PP_006VXUH|ANDV/Oligoryzomys longicaudatus/CHL/9717869_06/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXUH", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXUH.1", "url": "https://pathoplexus.org/seq/PP_006VXUH.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK059789.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059789.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000133", "node_attrs": {"div": 0.208227, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C2675T", "G3151A"], "GPC": ["P875L", "V1034I"], "Gc": ["P224L", "V383I"]}, "labels": {"aa": "GPC: P875L, V1034I; Gc: P224L, V383I"}}, "children": [{"name": "PP_006VY3Z|ANDV/Oligoryzomys longicaudatus/CHL/9717869_39/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208813, "strain": {"value": "PP_006VY3Z|ANDV/Oligoryzomys longicaudatus/CHL/9717869_39/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY3Z", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY3Z.1", "url": "https://pathoplexus.org/seq/PP_006VY3Z.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513892.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513892.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["A1697G", "C3338T"], "GPC": ["D549G", "S1096L"], "Gc": ["S445L"], "Gn": ["D549G"]}, "labels": {"aa": "GPC: D549G, S1096L; Gc: S445L; Gn: D549G"}}}, {"name": "NODE_0000134", "node_attrs": {"div": 0.208229, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000135", "node_attrs": {"div": 0.208521, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C2663A"], "GPC": ["A871E"], "Gc": ["A220E"]}, "labels": {"aa": "GPC: A871E; Gc: A220E"}}, "children": [{"name": "PP_006VY4X|ANDV/Oligoryzomys longicaudatus/CHL/9717869_41/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208814, "strain": {"value": "PP_006VY4X|ANDV/Oligoryzomys longicaudatus/CHL/9717869_41/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY4X", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY4X.1", "url": "https://pathoplexus.org/seq/PP_006VY4X.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513893.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513893.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {"nuc": ["T246C"]}}}, {"name": "NODE_0000136", "node_attrs": {"div": 0.208523, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VYBH|ANDV/Oligoryzomys longicaudatus/CHL/9717869_42/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208525, "strain": {"value": "PP_006VYBH|ANDV/Oligoryzomys longicaudatus/CHL/9717869_42/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VYBH", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VYBH.1", "url": "https://pathoplexus.org/seq/PP_006VYBH.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513900.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513900.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VY13|ANDV/Oligoryzomys longicaudatus/CHL/9717869_40/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208525, "strain": {"value": "PP_006VY13|ANDV/Oligoryzomys longicaudatus/CHL/9717869_40/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VY13", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VY13.1", "url": "https://pathoplexus.org/seq/PP_006VY13.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513890.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513890.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000137", "node_attrs": {"div": 0.208231, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VXQR|ANDV/Oligoryzomys longicaudatus/CHL/9717869_13/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208232, "strain": {"value": "PP_006VXQR|ANDV/Oligoryzomys longicaudatus/CHL/9717869_13/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXQR", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXQR.1", "url": "https://pathoplexus.org/seq/PP_006VXQR.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK059785.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059785.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000138", "node_attrs": {"div": 0.208232, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VXY9|ANDV/Oligoryzomys longicaudatus/CHL/9717869_15/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208232, "strain": {"value": "PP_006VXY9|ANDV/Oligoryzomys longicaudatus/CHL/9717869_15/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXY9", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2019-06-23"}, "PPX_accession": {"value": "PP_006VXY9.1", "url": "https://pathoplexus.org/seq/PP_006VXY9.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK513887.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK513887.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VXMX|ANDV/Oligoryzomys longicaudatus/CHL/9717869_14/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208232, "strain": {"value": "PP_006VXMX|ANDV/Oligoryzomys longicaudatus/CHL/9717869_14/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXMX", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXMX.1", "url": "https://pathoplexus.org/seq/PP_006VXMX.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK059782.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059782.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3418}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, "root_sequence": {"GPC": "MEGWYLVVLGVCYTLTLAMPKTIYELKMECPHTVGLGQGYIIGSTELGLISIEAASDIKLESSCNFDLHTTSMAQKSFTQVEWRKKSDTTDTTNAASTTFEAQTKTVNLRGTCILAPELYDTLKKVKKTVLCYDLTCNQTHCQPTVYLIAPVLTCMSIRSCMASVFTSRIQVIYEKTHCVTGQLIEGQCFNPAHTLTLSQPAHTYDTVTLPISCFFTPKKSEQLKVIKTFEGILTKTGCTENALQGYYVCFLGSHSEPLIVPSLEDIRSAEVVSRMLVHPRGEDHDAIQNSQSHLRIVGPITAKVPSTSSTDTLKGTAFAGVPMYSSLSTLVRNADPEFVFSPGIVPESNHSTCDKKTVPITWTGYLPISGEMEKVTGCTVFCTLAGPGASCEAYSENGIFNISSPTCLVNKVQRFRGSEQKINFICQRVDQDVVVYCNGQKKVILTKTLVIGQCIYTFTSLFSLMPDVAHSLAVELCVPGLHGWATVMLLSTFCFGWVLIPAVTLIILKCLRVLTFSCSHYTNESKFKFILEKVKIEYQKTMGSMVCDVCHHECETAKELESHRQSCINGQCPYCMTITEATESALQAHYSICKLTGRFQEALKKSLKKPEVKKGCYRTLGVFRYKSRCYVGLVWCLLLTCEIVIWAASAETPLMESGWSDTAHGVGEIPMKTDLELDFSLPSSSSYSYRRKLTNPANKEESIPFHFQMEKQVIHAEIQPLGHWMDATFNIKTAFHCYGACQKYSYPWQTSKCFFEKDYQYETGWGCNPGDCPGVGTGCTACGVYLDKLKSVGKAYKIISLKYTRKVCIQLGTEQTCKHIDANDCLVTPSVKVCIVGTVSKLQPSDTLLFLGPLEQGGIILKQWCTTSCAFGDPGDIMSTPSGMRCPEHTGSFRKICGFATTPVCEYQGNTISGYKRMMATKDSFQSFNLTEPHITTNKLEWIDPDGNTRDHVNLVLNRDVSFQDLSDNPCKVDLHTQAIEGAWGSGVGFTLTCTVGLTECPSFMTSIKACDLAMCYGSTVTNLARGSNTVKVVGKGGHSGSSFKCCHDTDCSSEGLLASAPHLERVTGFNQIDSDKVYDDGAPPCTFKCWFTKSGEWLLGILNGNWIVVVVLVVILILSIIMFSVLCPRRGHKKTV*", "Gc": "ETPLMESGWSDTAHGVGEIPMKTDLELDFSLPSSSSYSYRRKLTNPANKEESIPFHFQMEKQVIHAEIQPLGHWMDATFNIKTAFHCYGACQKYSYPWQTSKCFFEKDYQYETGWGCNPGDCPGVGTGCTACGVYLDKLKSVGKAYKIISLKYTRKVCIQLGTEQTCKHIDANDCLVTPSVKVCIVGTVSKLQPSDTLLFLGPLEQGGIILKQWCTTSCAFGDPGDIMSTPSGMRCPEHTGSFRKICGFATTPVCEYQGNTISGYKRMMATKDSFQSFNLTEPHITTNKLEWIDPDGNTRDHVNLVLNRDVSFQDLSDNPCKVDLHTQAIEGAWGSGVGFTLTCTVGLTECPSFMTSIKACDLAMCYGSTVTNLARGSNTVKVVGKGGHSGSSFKCCHDTDCSSEGLLASAPHLERVTGFNQIDSDKVYDDGAPPCTFKCWFTKSGEWLLGILNGNWIVVVVLVVILILSIIMFSVLCPRRGHKKTV*", "Gn": "MEGWYLVVLGVCYTLTLAMPKTIYELKMECPHTVGLGQGYIIGSTELGLISIEAASDIKLESSCNFDLHTTSMAQKSFTQVEWRKKSDTTDTTNAASTTFEAQTKTVNLRGTCILAPELYDTLKKVKKTVLCYDLTCNQTHCQPTVYLIAPVLTCMSIRSCMASVFTSRIQVIYEKTHCVTGQLIEGQCFNPAHTLTLSQPAHTYDTVTLPISCFFTPKKSEQLKVIKTFEGILTKTGCTENALQGYYVCFLGSHSEPLIVPSLEDIRSAEVVSRMLVHPRGEDHDAIQNSQSHLRIVGPITAKVPSTSSTDTLKGTAFAGVPMYSSLSTLVRNADPEFVFSPGIVPESNHSTCDKKTVPITWTGYLPISGEMEKVTGCTVFCTLAGPGASCEAYSENGIFNISSPTCLVNKVQRFRGSEQKINFICQRVDQDVVVYCNGQKKVILTKTLVIGQCIYTFTSLFSLMPDVAHSLAVELCVPGLHGWATVMLLSTFCFGWVLIPAVTLIILKCLRVLTFSCSHYTNESKFKFILEKVKIEYQKTMGSMVCDVCHHECETAKELESHRQSCINGQCPYCMTITEATESALQAHYSICKLTGRFQEALKKSLKKPEVKKGCYRTLGVFRYKSRCYVGLVWCLLLTCEIVIWAASA", "nuc": "TAGTAGTAGACTCCGCAAGAAGAAGCAAAAAATTAAAGAAGTGAGTTTAAAATGGAAGGGTGGTATCTGGTTGTTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCCAAGACCATTTATGAGCTTAAAATGGAATGCCCGCACACTGTGGGTCTCGGTCAAGGTTACATCATTGGCTCAACAGAACTAGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTCGAGAGCTCTTGCAATTTTGATCTTCATACAACATCTATGGCCCAGAAGAGTTTCACCCAAGTTGAATGGAGAAAGAAAAGTGACACAACTGATACCACAAATGCTGCGTCCACTACCTTTGAAGCACAAACTAAAACTGTTAACCTTAGAGGGACTTGTATACTGGCACCTGAACTCTATGATACATTGAAGAAAGTAAAAAAGACAGTCCTGTGCTATGATCTAACATGTAATCAAACACATTGTCAGCCAACTGTCTATCTGATTGCACCTGTATTGACATGCATGTCAATAAGAAGTTGTATGGCTAGTGTGTTTACAAGCAGGATTCAGGTGATTTATGAAAAGACACATTGTGTAACAGGTCAGCTGATTGAGGGTCAGTGTTTCAACCCAGCACACACATTGACATTATCTCAGCCTGCTCACACTTATGATACTGTCACCCTTCCTATCTCTTGTTTTTTCACACCAAAGAAGTCGGAGCAACTAAAAGTTATAAAAACATTTGAAGGAATTCTGACGAAGACAGGTTGCACGGAGAATGCATTGCAGGGTTATTATGTGTGTTTTTTAGGGAGTCATTCAGAACCTTTAATTGTTCCGAGTTTGGAGGACATACGGTCTGCTGAAGTTGTTAGTAGGATGCTTGTACACCCTAGGGGAGAAGACCATGATGCCATACAGAATTCACAAAGTCACTTAAGAATAGTGGGACCTATCACAGCAAAAGTGCCATCAACTAGTTCCACAGATACCCTAAAGGGGACAGCCTTTGCAGGCGTCCCAATGTATAGCTCTTTATCTACACTAGTCAGAAATGCAGACCCAGAATTTGTATTTTCTCCAGGTATAGTACCTGAATCTAATCACAGTACATGTGATAAGAAGACAGTACCTATCACATGGACAGGCTACCTACCAATATCAGGTGAGATGGAAAAAGTGACTGGATGTACAGTTTTTTGTACACTAGCAGGACCTGGTGCTAGTTGTGAGGCCTATTCTGAAAATGGTATATTTAACATCAGTTCTCCAACATGTCTTGTAAACAAAGTCCAAAGATTTCGTGGATCTGAACAGAAAATAAATTTTATCTGTCAGCGGGTAGATCAGGATGTTGTTGTATACTGCAATGGGCAAAAGAAAGTCATATTAACCAAAACTTTGGTTATTGGGCAGTGTATTTATACATTCACAAGCCTATTTTCATTGATGCCTGATGTAGCCCACTCATTGGCTGTAGAATTATGTGTCCCGGGATTACATGGATGGGCCACTGTCATGCTTCTATCAACATTCTGCTTTGGGTGGGTCTTGATTCCTGCGGTCACATTAATAATATTAAAGTGTCTAAGGGTTTTGACGTTTTCTTGTTCCCATTACACTAATGAGTCAAAATTTAAATTCATCCTGGAAAAAGTTAAAATTGAATACCAAAAGACTATGGGATCAATGGTGTGCGATGTATGTCATCATGAGTGTGAAACAGCAAAAGAACTTGAATCACATAGACAGAGTTGTATCAATGGACAATGTCCTTATTGCATGACAATAACTGAAGCAACTGAAAGTGCCTTGCAAGCCCATTATTCCATTTGTAAATTGACAGGAAGATTTCAGGAGGCACTGAAAAAGTCACTTAAAAAGCCAGAGGTAAAAAAAGGTTGTTACAGAACACTCGGGGTATTTAGATATAAAAGTAGATGTTATGTGGGTTTGGTATGGTGCCTATTGTTGACATGTGAAATTGTTATTTGGGCCGCAAGTGCAGAGACTCCACTAATGGAGTCAGGCTGGTCAGATACGGCTCATGGTGTTGGTGAGATTCCAATGAAGACAGACCTCGAGCTGGACTTTTCACTGCCTTCTTCATCCTCTTACAGTTATAGGAGAAAGCTCACAAACCCAGCCAATAAAGAAGAGTCTATTCCCTTCCACTTCCAGATGGAAAAACAAGTAATTCATGCTGAAATCCAACCCCTGGGTCATTGGATGGATGCGACATTTAATATTAAGACTGCATTTCATTGTTATGGTGCATGCCAGAAATACTCTTATCCATGGCAGACATCTAAGTGCTTCTTTGAAAAGGACTACCAGTATGAAACAGGCTGGGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGATGCACTGCTTGTGGTGTTTATCTCGATAAACTAAAATCTGTTGGGAAGGCCTATAAGATAATTTCTTTAAAATATACCAGAAAGGTTTGTATTCAGTTAGGAACAGAACAAACTTGCAAGCATATTGATGCAAATGATTGTTTAGTGACACCATCTGTGAAAGTTTGCATAGTGGGCACAGTTTCAAAACTTCAACCATCTGATACTCTTTTGTTCTTAGGTCCACTAGAACAAGGGGGAATCATTCTTAAGCAATGGTGCACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCCACTCCCAGTGGTATGAGGTGTCCAGAGCACACTGGATCATTTAGGAAAATTTGCGGTTTTGCTACTACACCAGTTTGTGAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATGGCAACAAAAGATTCATTCCAATCATTTAACTTAACAGAACCTCACATCACAACAAACAAGCTTGAATGGATCGACCCAGATGGGAATACAAGAGACCACGTAAACCTTGTCTTAAATAGAGATGTCTCATTTCAGGATTTAAGTGATAACCCCTGTAAAGTAGACCTACACACACAAGCAATAGAAGGGGCATGGGGTTCTGGTGTAGGGTTTACACTCACATGTACTGTCGGATTAACAGAGTGCCCAAGTTTTATGACATCAATTAAGGCATGTGACCTAGCTATGTGTTATGGATCAACAGTAACAAACCTTGCCAGGGGCTCTAATACAGTGAAAGTAGTTGGTAAAGGAGGCCATTCAGGGTCCTCATTTAAATGCTGTCATGATACAGATTGCTCCTCTGAAGGTTTACTTGCATCAGCCCCTCATCTTGAGAGGGTAACAGGATTCAATCAAATTGATTCAGATAAGGTTTATGATGATGGTGCACCACCTTGCACATTCAAATGCTGGTTCACTAAGTCAGGTGAGTGGCTTCTTGGGATCTTAAACGGGAATTGGATTGTTGTTGTAGTGCTTGTTGTGATACTCATTCTCTCTATCATAATGTTCAGTGTTTTGTGTCCCAGGAGAGGGCACAAGAAAACTGTCTAAGCATTGACCTCAACTCCTACATTAGATCATATACATTTATGCACTTCCTCATATTTAGCTGCACTAAGATATTAATAAACTCTAGTTATTGACTTTATAAGATTATTATGGAACTAACCTCACTTAAAAAAAACAAATACTTTACTCATATATAACTCCATATTCTCTTACCGAGGCTTTTGTTCCTGCGGAGCATACTACTA"}} \ No newline at end of file diff --git a/data_output/nextstrain/orthohantavirus/andv/s/unreleased/CHANGELOG.md b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/CHANGELOG.md new file mode 100644 index 000000000..894bac942 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/CHANGELOG.md @@ -0,0 +1,16 @@ +## Unreleased + +- update outbreak name to 2026-Hondius +- make nucleotide default sequence view. +- add GPC amino acid substitutions + + +## 2026-05-11T18:59:50Z + +- Updating Nextclade dataset with the latest sequences and metadata from Pathoplexus +- Include 2026 outbreak sequences +- add 2026 outbreak annotation + +## 2026-05-08T21:17:05Z + + - initial release diff --git a/data_output/nextstrain/orthohantavirus/andv/s/unreleased/README.md b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/README.md new file mode 100644 index 000000000..8d08817ca --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/README.md @@ -0,0 +1,18 @@ +# Andesvirus segment S dataset + +| Key | Value | +| :-- | :-- | +| name | Andes virus segment S Tree | +| authors | [Nextstrain](https://nextstrain.org) | +| reference | [NC_003466](www.ncbi.nlm.nih.gov/nuccore/NC_003466) | +| workflow | https://github.com/nextstrain/andv/tree/main/nextclade | +| path | `nextstrain/orthohantavirus/andv/s` | + +This dataset aligns sequences to the RefSeq entry [NC_003466](www.ncbi.nlm.nih.gov/nuccore/NC_003466) and places the sequences onto a tree build using sequences from INSDC and Pathoplexus. +Sequences from the 2026 outbreak were rapidly shared by several laboratories around the world to facilitate outbreak investigations. These data have been released under RESTRICTED USE terms on Pathoplexus. +We refer to the [summary of the initial investigations by this collaboration on virological.org](https://virological.org/t/preliminary-analysis-of-orthohantavirus-andesense-virus-sequences-from-a-cruise-ship-related-cluster-may-2026/1029) for further details. + + +## What are Nextclade datasets + +Read more about Nextclade datasets in the Nextclade documentation: https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html diff --git a/data_output/nextstrain/orthohantavirus/andv/s/unreleased/dataset.zip b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/dataset.zip new file mode 100644 index 000000000..02888ce49 Binary files /dev/null and b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/dataset.zip differ diff --git a/data_output/nextstrain/orthohantavirus/andv/s/unreleased/genome_annotation.gff3 b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/genome_annotation.gff3 new file mode 100644 index 000000000..7f488f752 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/genome_annotation.gff3 @@ -0,0 +1,8 @@ +##gff-version 3 +#!gff-spec-version 1.21 +#!processor NCBI annotwriter +##sequence-region NC_003466.1 1 1871 +##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1980456 +NC_003466.1 RefSeq region 1 1871 . + . ID=NC_003466.1:1..1871;Dbxref=taxon:1980456;Name=S;gbkey=Src;genome=genomic;mol_type=viral cRNA;old-name=Andes virus;segment=S;strain=Chile-9717869 +NC_003466.1 RefSeq CDS 43 1329 . + 0 Name=N;gbkey=CDS;locus_tag=ANDVsSgp1;protein_id=NP_604471.1;ID=cds-NP_604471.1;product=nucleocapsid protein;Dbxref=GenBank:NP_604471.1,GeneID:991232 +NC_003466.1 RefSeq CDS 122 313 . + 0 Name=NSs;gbkey=CDS;locus_tag=ANDVsSgp2;protein_id=YP_004928151.1;ID=cds-YP_004928151.1;product=NSs diff --git a/data_output/nextstrain/orthohantavirus/andv/s/unreleased/pathogen.json b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/pathogen.json new file mode 100644 index 000000000..aee4a2f85 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/pathogen.json @@ -0,0 +1,67 @@ +{ + "$schema": "https://raw.githubusercontent.com/nextstrain/nextclade/refs/heads/release/packages/nextclade-schemas/input-pathogen-json.schema.json", + "files": { + "reference": "reference.fasta", + "pathogenJson": "pathogen.json", + "genomeAnnotation": "genome_annotation.gff3", + "treeJson": "tree.json", + "examples": "sequences.fasta", + "readme": "README.md", + "changelog": "CHANGELOG.md" + }, + "schemaVersion": "3.0.0", + "attributes": { + "name": "Andesvirus (segment S)", + "reference name": "Chile-9717869", + "reference accession": "NC_003466", + "experimental": true + }, + "alignmentParams": { + "penaltyGapExtend": 1, + "penaltyGapOpen": 8, + "penaltyGapOpenInFrame": 15, + "penaltyGapOpenOutOfFrame": 18, + "penaltyMismatch": 1, + "scoreMatch": 5, + "retryReverseComplement": true, + "excessBandwidth": 50, + "terminalBandwidth": 100, + "allowedMismatches": 10, + "minSeedCover": 0.12, + "minLength": 100 + }, + "qc": { + "missingData": { + "enabled": true, + "missingDataThreshold": 200, + "scoreBias": 100 + }, + "mixedSites": { + "enabled": true, + "mixedSitesThreshold": 4 + }, + "frameShifts": { + "enabled": true + }, + "stopCodons": { + "enabled": true + }, + "privateMutations": { + "enabled": true, + "cutoff": 50, + "typical": 30, + "weightLabeledSubstitutions": 1, + "weightReversionSubstitutions": 1, + "weightUnlabeledSubstitutions": 1 + }, + "snpClusters": { + "enabled": true, + "clusterCutOff": 15, + "scoreWeight": 50, + "windowSize": 50 + } + }, + "version": { + "tag": "unreleased" + } +} diff --git a/data_output/nextstrain/orthohantavirus/andv/s/unreleased/reference.fasta b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/reference.fasta new file mode 100644 index 000000000..5cdfd9418 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/reference.fasta @@ -0,0 +1,33 @@ +>NC_003466.1 Andes virus segment S, complete sequence +TAGTAGTAGACTCCTTGAGAAGCTACTGCTGCGAAAGCTGGAATGAGCACCCTCCAAGAA +TTGCAGGAAAACATCACAGCACACGAACAACAGCTCGTGACTGCTCGGCAAAAGCTTAAG +GATGCCGAGAAGGCAGTGGAGGTGGACCCGGATGACGTTAACAAGAGCACACTACAAAGT +AGACGGGCAGCTGTGTCTACATTGGAGACCAAACTCGGAGAACTTAAGAGGCAACTTGCA +GATTTGGTGGCAGCTCAAAAATTGGCTACAAAACCAGTTGATCCAACAGGGCTTGAGCCT +GATGATCATCTAAAGGAAAAATCATCTCTGAGATATGGGAATGTCCTGGATGTTAATTCA +ATTGATTTGGAAGAACCGAGTGGACAGACTGCTGATTGGAAGGCTATAGGAGCATACATC +TTAGGGTTTGCAATTCCGATCATCCTAAAGGCCTTATACATGCTGTCAACCCGTGGGAGA +CAAACTGTGAAAGACAACAAAGGGACCAGGATAAGGTTTAAGGATGATTCTTCCTTTGAA +GAAGTCAATGGGATACGTAAACCAAAACACCTTTACGTCTCAATGCCAACTGCACAGTCC +ACTATGAAGGCTGAAGAAATCACGCCAGGACGATTTAGGACAATTGCTTGTGGCCTTTTT +CCAGCACAGGTCAAAGCCCGAAATATAATAAGTCCTGTAATGGGAGTAATTGGATTTGGC +TTCTTTGTAAAGGATTGGATGGATCGGATAGAAGAGTTTCTGGCTGCAGAGTGTCCATTC +TTACCTAAGCCAAAGGTCGCCTCAGAAGCCTTCATGTCTACCAATAAGATGTATTTTCTG +AACAGACAGAGACAAGTCAATGAATCTAAGGTTCAAGATATTATCGATTTGATAGACCAT +GCTGAGACCGAGTCTGCTACCTTGTTTACAGAGATTGCAACACCCCATTCAGTCTGGGTG +TTTGCATGTGCACCTGACCGGTGCCCTCCAACTGCATTGTATGTTGCAGGGGTACCGGAA +CTTGGTGCATTTTTTTCTATCCTTCAGGACATGCGTAATACCATCATGGCATCTAAATCT +GTAGGGACTGCAGAAGAGAAGCTAAAGAAAAAATCTGCCTTCTACCAATCATACCTAAGA +AGGACACAATCTATGGGAATCCAACTGGACCAGAAGATCATAATCCTTTACATGCTATCA +TGGGGTAAAGAAGCTGTGAATCACTTCCATCTTGGTGATGATATGGACCCTGAACTCAGG +CAGCTAGCACAATCTCTGATCGATACTAAGGTGAAGGAGATCTCCAACCAAGAGCCACTT +AAGTTGTAGGTGCTTAATGAAATCATGATTGAAGAAAGACTTTCCGGGCTTGTGCCACAT +ATTAATCATCTCAGGACCTATCCTTAATGTGATTAATAGGGTTTTATTATAAGGGCAGTT +AATGGGGTTGGTTACTAACTATGGGTAAGGGTTCATTACCATTTTTGCACTAGGGTTAAA +GGGCCACTACATTGTATTTGCACTAAGGGAAATGGGAGGTGGGTTAGTTTGTATTTAGTT +GTTAAGTTTTTTATAATCATATGTTAATGAGGAATTAGCTATATGATATCACTGATTGAT +TGGCTATTTTTAGGTTAAGTAATTGTAGTTAAATAGTTGTGTTAAGTTAGTATGTTAAGG +TTTATAGGTTAAGATTTACTAACAATCATATTATGTCATTAGATGTAAATTTCATTCCTG +GCTTGCTTCTGCTTTCGCATTGCTAACCTACAACAAGACTACCTCACCCACTACCCCTCC +CCTATTCTACCTCAACACATACTACCTCACATTTGATTTTTCTTGATTGCTTTTCAAGGA +GCATACTACTA diff --git a/data_output/nextstrain/orthohantavirus/andv/s/unreleased/sequences.fasta b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/sequences.fasta new file mode 100644 index 000000000..829c4f9b0 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/sequences.fasta @@ -0,0 +1,293 @@ +>EU241691 +GACCAAACTCGGAGAACTTAAGAGGCAGCTTGCGGATTTGGTGGCAGCTCAGAAACTGGC +TACAAAACCAGTTGATCCAACAGGGCTTGAGCCTGATGATCATTTAAAGGAGAAGTCATC +TTTGAGATATGGGAATGTCCTGGATGTTAATTCAATTGATCTGGAAGAGCCAAGTGGACA +GACTGCTGACTGGAAAGCAATAGGAGCATATATCCTAGGATTTGCAATCCCAATCATCTT +AAAAGCCCTATACATGCTGTCAACTCGTGGGAGACAAACTGTGAAGGACAACAAGGGGAC +CCGGATAAGATTCAAGGATGATTCCTCCTTTGAAGAGGTGAACGGGATACGCAAACCAAA +ACATCTTTATGTCTCAATGCCAACTGCACAATCCACAATGAAAGCTGAAGAGATCACACC +AGGGCGGTTCAGGACAATTGCTTGTGGCCTTTTTCCAGCACAGGTCAAAGCTAGGAACAT +AATAAGCCCTGTAATGGGTGTAATTGGGTTTGGTTTCTTTGTGAAAGACTGGATGGACCG +GATAGAAGAATTCTTGGCTGCAGAGTGCCCATTCTTGCCTAAGCCAAAGGTAGCTTCTGA +ATCCTTTATGTCTACCAACAAGATGTATTTTCTAAACAGGCAAAGGCAAGTCAATGAGTC +CAAGGTTCAAGATATTGTTGACTTGATAGATCATGCTGAGACTGAGTCTGCTACCTTGTT +CACGGAGATTGCAACACCCCATTCAGTCTGGGTGTTTGCATGTGCACCTGACCGATGCCC +TCCAACTGCATTATATGTTGCAGGTGTTCCGGAATTAGGTGCATTTTTTTCTATTCTTCA +GGATATGCGGAATACTATCATGGCATCCAAGTCCGTAGGGACGGCAGAGGAAAAGCTGAA +GAAAAAATCTGCATTTTATCAATCTTA +>EU241698 +GACCAAACTCGGGGAACTCAAGAGGCAACTTGCAGATCTGGTGGCAGCTCAAAAATTGGC +TACAAAACCAGTTGATCCAACAGGGCTTGAGCCTGATGACCATCTGAAAGAGAAATCATC +TCTGAGATATGGGAATGTCCTGGATGTGAATTCAATTGATTTGGAAGAACCAAGTGGACA +GACTGCTGATTGGAAGGCTATAGGAGCATATATCTTAGGGTTTGCAATTCCGATCATACT +AAAAGCCCTATATATGCTATCAACCCGTGGGAGACAGACTGTGAAAGACAACAAAGGAAC +CAGGATAAGGTTTAAGGATGATTCTTCCTTTGAAGAGGTCAACGGGATACGTAAGCCAAA +ACACCTTTATGTCTCAATGCCAACTGCACAATCTACTATGAAGGCTGAAGAAATCACACC +AGGACGGTTTAGGACAATTGCTTGTGGCCTCTTTCCAGCACAGGTCAAAGCTCGAAATAT +AATAAGTCCTGTGATGGGAGTAATTGGATTTGGCTTCTTTGTAAAAGACTGGATGGATCG +GATAGAGGAATTCCTGGCTGCAGAGTGTCCATTCCTGCCTAAGCCAAAGGTTGCCTCAGA +AGCCTTCATGTCTACCAACAAGATGTACTTCCTGAACAGACAAAGACAAGTCAATGAATC +TAAGGTTCAAGACATTATTGATTTAATAGATCATGCTGAAACTGAGTCTGCTACCTTGTT +TACGGAAATTGCAACACCCCATTCAGTCTGGGTGTTTGCATGTGCGCCTGACCGGTGCCC +TCCGACTGCATTGTATGTTGCAGGGGTACCAGAACTTGGTGCATTCTTTTCCATTCTTCA +GGACATGCGTAATACCATCATGGCATCCAAATCTGTGGGGACTGCAGAAGAGAAGCTAAA +GAAGAAATCTGCTTTCTATCAATCTTACCTAAGAAGGACACAA +>FV536453 +TAGTAGTATGTTTTTTGAAAAGTAATTAAGAAAAATTAAATGTGAGGTAGTATGTGTTGA +GGTAGAATAGGGGAGGGGTAGTGGGTGAGGTAGTTTTGTTGTAGGTTAGTAATGTGAAAG +TAGAAGTAAGTTAGGAATGAAATTTATATTTAATGATATAATATGATTGTTAGTAAATTT +TAATTTATAAATTTTAATATATTAATTTAATATAATTATTTAATTATAATTATTTAATTT +AAAAATAGTTAATTAATTAGTGATATTATATAGTTAATTTTTTATTAATATATGATTATA +AAAAATTTAATAATTAAATATAAATTAATTTATTTTTTATTTTTTTTAGTGTAAATATAA +TGTAGTGGTTTTTTAATTTTAGTGTAAAAATGGTAATGAATTTTTATTTATAGTTAGTAA +TTAATTTTATTAATTGTTTTTATAATAAAATTTTATTAATTATATTAAGGATAGGTTTTG +AGATGATTAATATGTGGTATAAGTTTGGAAAGTTTTTTTTTAATTATGATTTTATTAAGT +ATTTATAATTTAAGTGGTTTTTGGTTGGAGATTTTTTTTATTTTAGTATTGATTAGAGAT +TGTGTTAGTTGTTTGAGTTTAGGGTTTATATTATTATTAAGATGGAAGTGATTTATAGTT +TTTTTATTTTATGATAGTATGTAAAGGATTATGATTTTTTGGTTTAGTTGGATTTTTATA +GATTGTGTTTTTTTTAGGTATGATTGGTAGAAGGTAGATTTTTTTTTTAGTTTTTTTTTT +GTAGTTTTTATAGATTTAGATGTTATGATGGTATTATGTATGTTTTGAAGGATAGAAAAA +AATGTATTAAGTTTTGGTATTTTTGTAATATATAATGTAGTTGGAGGGTATTGGTTAGGT +GTATATGTAAATATTTAGATTGAATGGGGTGTTGTAATTTTTGTAAATAAGGTAGTAGAT +TTGGTTTTAGTATGGTTTATTAAATTGATAATATTTTGAATTTTAGATTTATTGATTTGT +TTTTGTTTGTTTAGAAAATATATTTTATTGGTAGATATGAAGGTTTTTGAGGTGATTTTT +GGTTTAGGTAAGAATGGATATTTTGTAGTTAGAAATTTTTTTATTTGATTTATTTAATTT +TTTATAAAGAAGTTAAATTTAATTATTTTTATTATAGGATTTATTATATTTTGGGTTTTG +ATTTGTGTTGGAAAAAGGTTATAAGTAATTGTTTTAAATTGTTTTGGTGTGATTTTTTTA +GTTTTTATAGTGGATTGTGTAGTTGGTATTGAGATGTAAAGGTGTTTTGGTTTATGTATT +TTATTGATTTTTTTAAAGGAAGAATTATTTTTAAATTTTATTTTGGTTTTTTTGTTGTTT +TTTATAGTTTGTTTTTTATGGGTTGATAGTATGTATAAGGTTTTTAGGATGATTGGAATT +GTAAATTTTAAGATGTATGTTTTTATAGTTTTTTAATTAGTAGTTTGTTTATTTGGTTTT +TTTAAATTAATTGAATTAATATTTAGGATATTTTTATATTTTAGAGATGATTTTTTTTTT +AGATGATTATTAGGTTTAAGTTTTGTTGGATTAATTGGTTTTGTAGTTAATTTTTGAGTT +GTTATTAAATTTGTAAGTTGTTTTTTAAGTTTTTTGAGTTTGGTTTTTAATGTAGATATA +GTTGTTTGTTTATTTTGTAGTGTGTTTTTGTTAATGTTATTTGGGTTTATTTTTATTGTT +TTTTTGGTATTTTTAAGTTTTTGTTGAGTAGTTATGAGTTGTTGTTTGTGTGTTGTGATG +TTTTTTTGTAATTTTTGGAGGGTGTTTATTTTAGTTTTTGTAGTAGTAGTTTTTTAAGGA +GTTTATTATTA +>MN258238 +GTAGTAGACTCCTTGAGAAGCTACTGCTGCGAAAGCTGGAATGAGCACCCTCCAAGAACT +ACAAGAAAACATCACAGCACACGAACAACAGCTCGTGACTGCTCGGCAAAAGCTTAAAGA +TGCCGAGAAGGCGGTGGAGGTGGACCCGGATGACGTTAACAAGAGCACATTACAAAGTAG +ACGGGCAGCTGTGTCTACATTGGAGACCAAACTCGGGGAACTCAAGAGGCAACTTGCGGA +TCTGGTGGCAGCTCAAAAGTTGGCTACAAAACCAGTTGATCCAACAGGGCTTGAGCCTGA +TGACCATCTGAAAGAGAAATCATCTCTGAGATATGGGAATGTCCTGGATGTTAACTCAAT +CGACTTGGAAGAACCGAGTGGACAGACTGCTGATTGGAAGGCTATAGGAGCATATATCTT +AGGGTTTGCAATTCCGATCATACTAAAAGCCCTATATATGCTGTCAACCCGCGGGAGACA +AACTGTGAAAGACAATAAAGGAACTAGGATAAGGTTTAAGGATGATTCTTCCTTTGAAGA +AGTCAATGGGATACGTAAACCAAAACACCTTTATGTCTCAATGCCGACTGCACAGTCTAC +TATGAAGGCTGAAGAAATCACGCCAGGACGTTTTAGGACAATTGCTTGTGGCCTCTTCCC +AGCACAGGTCAAAGCTCGAAACATAATAAGCCCTGTAATGGGAGTGATTGGATTTGGCTT +CTTTGTGAAGGACTGGATGGATCGGATAGAGGAATTCCTGGCTGCAGAGTGTCCATTCTT +GCCTAAGCCAAAGGTTGCCTCAGAAGCCTTCATGTCTACCAACAAGATGTATTTCCTGAA +CAGACAGAGACAAGTCAATGAATCTAAGGTTCAAGACATTATTGATTTGATAGATCATGC +TGAAACTGAGTCTGCTACCTTGTTTACGGAAATTGCAACACCCCATTCAGTCTGGGTGTT +TGCATGTGCGCCTGACCGGTGCCCTCCAACTGCATTGTATGTCGCAGGGGTACCAGAACT +TGGTGCATTCTTTTCCATTCTTCAGGACATGCGTAATACCATCATGGCATCTAAATCTGT +AGGGACTGCAGAAGAGAAGCTAAAGAAGAAATCTGCCTTCTATCAATCTTACCTGAGAAG +AACACAATCTATGGGGATTCAACTGGACCAAAAGATCATAATCCTCTACATGCTTTCATG +GGGTAAAGAAGCTGTGAATCATTTCCATCTTGGTGATGATATGGACCCTGAACTAAGGCA +GCTAGCACAATCCCTGATCGACACCAAGGTGAAGGAGATCTCCAACCAAGAGCCACTAAA +GTTGTAAATACTTAATGAAAGTATGATGGAAGAGAGACTTTCCGGGCTTGTGCCACATAT +TAATCATCTCAGGATCTATCCTTAATGTGATTAATAGGGTCTTATTATAAGGGCGGTTAA +GGGGTCAGATACTAACTACGGGTAAGGGTTCATTACTATCCTTTTGCACTAGGGTTAAAG +GGCCACTACATTGTATTTGCACTACGGGAAATGGGAGGTGGGTTAGTCTATATTGTAGTT +GTTAAGTTTTTGTACTCATAGGTTTATAAGGAATCAGCTATATGAGATCACTGATTGATT +GGCTATTTTTTTTAGGTTAAGTGATTACATTTAAATAGTTGTGTTAAGTTTAGTGTGTTA +AGGCCTATAGGTTAAGATCTACTAACAATTATATTATGTCATTGGATGTAAATTTCGTTC +CTGGCTTGCTTCTGCTTTCGCATTGCTAACCTACAACATAACTACCTCATCCACACACCC +TCCCCTATTCTACCTCAACACATACTACCTCATATTTGATTTTTCTTGATTGCTTTTCAA +GGAGC +>MN258239 +CTCCTTGAGAAGCTACTGCTGCGAAAGCTGGAATGAGCACCCTCCAAGAACTACAAGAAA +ACATCACAGCACACGAACAACAGCTCGTGACTGCTCGGCAAAAGCTTAAAGATGCCGAGA +AGGCGGTGGAGGTGGACCCGGATGACGTTAACAAGAGCACATTACAAAGTAGACGGGCAG +CTGTGTCTACATTGGAGACCAAACTCGGGGAACTCAAGAGGCAACTTGCGGATCTGGTGG +CAGCTCAAAAGTTGGCTACAAAACCAGTTGATCCAACAGGGCTTGAGCCTGATGACCATC +TGAAAGAGAAATCATCTCTGAGATATGGGAATGTCCTGGATGTTAACTCAATCGACTTGG +AAGAACCGAGTGGACAGACTGCTGATTGGAAGGCTATAGGAGCATATATCTTAGGGTTTG +CAATTCCGATCATACTAAAAGCCCTATATATGCTGTCAACCCGCGGGAGACAAACTGTGA +AAGACAATAAAGGAACTAGGATAAGGTTTAAGGATGATTCTTCCTTTGAAGAAGTCAATG +GGATACGTAAACCAAAACACCTTTATGTCTCAATGCCGACTGCACAGTCTACTATGAAGG +CTGAAGAAATCACGCCAGGACGTTTTAGGACAATTGCTTGTGGCCTCTTCCCAGCACAGG +TCAAAGCTCGAAACATAATAAGCCCTGTAATGGGAGTGATTGGATTTGGCTTCTTTGTGA +AGGACTGGATGGATCGGATAGAGGAATTCCTGGCTGCAGAGTGTCCATTCTTGCCTAAGC +CAAAGGTTGCCTCAGAAGCCTTCATGTCTACCAACAAGATGTATTTCCTGAACAGACAGA +GACAAGTCAATGAATCTAAGGTTCAAGACATTATTGATTTGATAGATCATGCTGAAACTG +AGTCTGCTACCTTGTTTACGGAAATTGCAACACCCCATTCAGTCTGGGTGTTTGCATGTG +CGCCTGACCGGTGCCCTCCAACTGCATTGTATGTCGCAGGGGTACCAGAACTTGGTGCAT +TCTTTTCCATTCTTCAGGACATGCGTAATACCATCATGGCATCTAAATCTGTAGGGACTG +CAGAAGAGAAGCTAAAGAAGAAATCTGCCTTCTATCAATCTTACCTGAGAAGAACACAAT +CTATGGGGATTCAACTGGACCAAAAGATCATAATCCTCTACATGCTTTCATGGGGTAAAG +AAGCTGTGAATCATTTCCATCTTGGTGATGATATGGACCCTGAACTAAGGCAGCTAGCAC +AATCCCTGATCGACACCAAGGTGAAGGAGATCTCCAACCAAGAGCCACTAAAGTTGTAAA +TACTTAATGAAAGTATGATGGAAGAGAGACTTTCCGGGCTTGTGCCACATATTAATCATC +TCAGGATCTATCCTTAATGTGATTAATAGGGTCTTATTATAAGGGCGGTTAAGGGGTCAG +ATACTAACTACGGGTAAGGGTTCATTACTATCCTTTTGCACTAGGGTTAAAGGGCCACTA +CATTGTATTTGCACTACGGGAAATGGGAGGTGGGTTAGTCTATATTGTAGTTGTTAAGTT +TTTGTACTCATAGGTTTATAAGGAATCAGCTATATGAGATCACTGATTGATTGGCTATTT +TTTTTAGGTTAAGTGATTACATTTAAATAGTTGTGTTAAGTTTAGTGTGTTAAGGCCTAT +AGGTTAAGATCTACTAACAATTATATTATGTCATTGGATGTAAATTTCGTTCCTGGCTTG +CTTCTGCTTTCGCATTGCTAACCTACAACATAACTACCTCATCCACACACCCTCCCCTAT +TCTACCTCAACACATACTACCTCATATTTGATTTTTCTTGATTGCTTTTCA +>MN258252 +CCTTGAGAAGCTACTGCTGCGAAAGCTGGAATGAGCACCCTCCAAGAACTACAAGAAAAC +ATCACAGCACACGAACAACAGCTCGTGACTGCTCGGCAAAAGCTTAAAGATGCCGAGAAG +GCGGTGGAGGTGGACCCGGATGACGTTAACAAGAGCACATTACAAAGTAGACGGGCAGCT +GTGTCTACATTGGAGACCAAACTCGGGGAACTCAAGAGGCAACTTGCGGATCTGGTGGCA +GCTCAAAAGTTGGCTACAAAACCAGTTGATCCAACAGGGCTTGAGCCTGATGACCATCTG +AAAGAGAAATCATCTCTGAGATATGGGAATGTCCTGGATGTTAACTCAATCGACTTGGAA +GAACCGAGTGGACAGACTGCTGATTGGAAGGCTATAGGAGCATATATCTTAGGGTTTGCA +ATTCCGATCATACTAAAAGCCCTATATATGCTGTCAACCCGCGGGAGACAAACTGTGAAA +GACAATAAAGGAACTAGGATAAGGTTTAAGGATGATTCTTCCTTTGAAGAAGTCAATGGG +ATACGTAAACCAAAACACCTTTATGTCTCAATGCCGACTGCACAGTCTACTATGAAGGCT +GAAGAAATCACGCCAGGACGTTTTAGGACAATTGCTTGTGGCCTCTTCCCAGCACAGGTC +AAAGCTCGAAACATAATAAGCCCTGTAATGGGAGTGATTGGATTTGGCTTCTTTGTGAAG +GACTGGATGGATCGGATAGAGGAATTCCTGGCTGCAGAGTGTCCATTCTTGCCTAAGCCA +AAGGTTGCCTCAGAAGCCTTCATGTCTACCAACAAGATGTATTTCCTGAACAGACAGAGA +CAAGTCAATGAATCTAAGGTTCAAGACATTATTGATTTGATAGATCATGCTGAAACTGAG +TCTGCTACCTTGTTTACGGAAATTGCAACACCCCATTCAGTCTGGGTGTTTGCATGTGCG +CCTGACCGGTGCCCTCCAACTGCATTGTATGTCGCAGGGGTACCAGAACTTGGTGCATTC +TTTTCCATTCTTCAGGACATGCGTAATACCATCATGGCATCTAAATCTGTAGGGACTGCA +GAAGAGAAGCTAAAGAAGAAATCTGCCTTCTATCAATCTTACCTGAGAAGAACACAATCT +ATGGGGATTCAACTGGACCAAAAGATCATAATCCTCTACATGCTTTCATGGGGTAAAGAA +GCTGTGAATCATTTCCATCTTGGTGATGATATGGACCCTGAACTAAGGCAGCTAGCACAA +TCCCTGATCGACACCAAGGTGAAGGAGATCTCCAACCAAGAGCCACTAAAGTTGTAAATA +CTTAATGAAAGTATGATGGAAGAGAGACTTTCCGGGCTTGTGCCACATATTAATCATCTC +AGGATCTATCCTTAATGTGATTAATAGGGTCTTATTATAAGGGCGGTTAAGGGGTCAGAT +ACTAACTACGGGTAAGGGTTCATTACTATCCTTTTGCACTAGGGTTAAAGGGCCACTACA +TTGTATTTGCACTACGGGAAATGGGAGGTGGGTTAGTCTATATTGTAGTTGTTAAGTTTT +TGTACTCATAGGTTTATAAGGAATCAGCTATATGAGATCACTGATTGATTGGCTATTTTT +TTTAGGTTAAGTGATTACATTTAAATAGTTGTGTTAAGTTTAGTGTGTTAAGGCCTATAG +GTTAAGATCTACTAACAATTATATTATGTCATTGGATGTAAATTTCGTTCCTGGCTTGCT +TCTGCTTTCGCATTGCTAACCTACAACATAACTACCTCATCCACACACCCTCCCCTATTC +TACCTCAACACATACTACCTCATATTTGATTTTTCTTGATTGCTTTTCA +>MN850086 +GTAGACTCCTTGAGAAGCTACTGCTGCGAAAGCTGGAATGAGCACCCTCCAAGAATTACA +AGAAAATATCACAGCACACGAACAACAGCTCGTGACTGCTCGGCAAAAGCTTAAAGATGC +CGAGAAGGCGGTGGAGGTGGACCCGGATGACGTTAACAAGAGCACACTACAAAGTAGACG +GGCAGCTGTGTCTACATTGGAGACCAAACTCGGGGAACTCAAGAGGCAACTTGCAGATCT +GGTGGCAGCTCAAAAGTTGGCTACAAAACCAGTTGATCCAACAGGGCTTGAGCCTGATGA +CCATCTGAAAGAGAAATCATCTCTGAGATATGGGAATGTCCTGGATGTCAACTCAATTGA +TTTGGAGGAACCAAGTGGACAGACTGCTGATTGGAGGGCTATAGGAGCATACATCTTAGG +ATTTGCAATTCCAATCATACTAAAAGCCCTATATATGCTGTCAACTCGTGGAAGACAAAC +TGTGAAAGACAATAAAGGAACCAGGATAAGGTTTAAGGACGATTCTTCCTTTGAGGAGGT +CAATGGGATACGTAAACCAAAACACCTTTATGTCTCAATGCCAACTGCGCAATCTACTAT +GAAGGCTGAAGAAATCACGCCAGGACGGTTTAGGACAATTGCTTGTGGCCTTTTCCCAGC +ACAGGTCAAAGCCCGAAACATAATAAGCCCTGTAATGGGGGTGATTGGATTTGGCTTTTT +TGTAAAGGACTGGATGGATCGGATAGAGGAATTCCTGGCTGCAGAATGTCCATTCTTACC +TAAGCCAAAGGTTGCCTCAGAAGCCTTCATGTCTACCAACAAGATGTATTTCCTGAACAG +ACAGAGACAAGTCAATGAATCTAAGGTTCAAGACATTATTGATTTGATAGATCATGCTGA +AACTGAGTCTGCCACCTTGTTTACAGAAATTGCAACACCACATTCAGTCTGGGTGTTTGC +ATGTGCGCCCGATCGGTGCCCTCCAACTGCATTGTATGTTGCAGGGGTACCAGAACTTGG +TGCATTCTTTTCCATTCTTCAAGACATGCGTAATACCATCATGGCATCCAAATCTGTAGG +GACTGCAGAAGAGAAACTAAAGAAAAAATCTGCCTTCTATCAATCTTACTTAAGAAGGAC +ACAATCCATGGGGATTCAACTGGACCAGAAGATCATAATTCTTTACATGCTATCTTGGGG +TAAAGAAGCTGTGAACCATTTCCATCTTGGTGATGATATGGACCCTGAATTAAGGCAGCT +AGCTCAATCCCTGATTGACACCAAGGTGAAAGAGATTTCCAACCAAGAGCCACTCAAGTT +GTAAGTGCTTAATGAAAGTATGACTGAAGAAAGATTTTCCGGGCTTGTGCCACATATTAA +TCATCTCAGGACCTATCCTCAATGTGATTAATAGGGTCTTATTATAAGGGTGGTTAAGGG +TTTAGTTACTAACTACGGGTAAGGGTTCATTACTATTTCCTCTGCACTAGGGTTAAAGGG +CCACTACATTGTATTTGCACTACGGGAAATGGGAGGTGGGTTAGTCTATATTGTAATTGT +TAAGTTTTTTGTACTCATAGGTTAATAAGGAATCAGCTATATGAAATCACTGATTGATTG +GCTATTTTTTTAGATTAAGTAGTTACATTTACATAGTTGTGTTAAGTTTAGTGTGTTAAG +GCCTATAGGTTAAGATCTACTAACAATTATATTATGTCATTAGATGTAAATTTCGTTCCT +GGCTTGCTTCTGCTTTCGCATTGCTAACCTACAACATAACTACCTCATCCACAAACCCTC +CCCTATTCTACCTCAACACATACTACCTCATATTTGATTTTTCTTGATTGCTTTTCAAGG +>MN850087 +CTCCTTGAGAAGCTACTGCTGCGAAAGCTGGAATGAGCACCCTCCAAGAATTACAAGAAA +ACATCACAGCACACGAACAACAGCTCGTGACTGCTCGGCAAAAGCTTAAAGATGCCGAGA +AGGCGGTGGAGGTGGACCCGGATGACGTTAACAAGAGCACATTACAAAGTAGACGGGCAG +CTGTGTCTACATTGGAGACCAAACTCGGGGAACTCAAGAGGCAACTTGCGGATTTGGTGG +CAGCTCAAAAGTTGGCTACAAAACCAGTTGATCCAACAGGGCTTGAGCCTGATGACCATC +TGAAAGAAAAATCATCTCTGAGATACGGGAATGTCCTGGATGTTAACTCAATTGACTTGG +AAGAACCGAGTGGACAGACTGCTGACTGGAAGGCTATAGGAGCATATATCTTAGGGTTTG +CAATTCCGATCATACTAAAAGCCCTATATATGCTGTCAACCCGCGGGAGACAAACTGTGA +AAGACAATAAAGGAACTAGGATAAGGTTTAAGGATGATTCTTCCTTTGAAGAAGTCAATG +GGATACGTAAACCAAAACACCTTTATGTCTCAATGCCGACTGCACAGTCTACTATGAAGG +CTGAAGAAATCACACCAGGACGTTTCAGGACAATTGCTTGTGGCCTCTTCCCAGCACAGG +TCAAAGCTCGAAACATAATAAGCCCTGTAATGGGAGTGATTGGATTTGGCTTCTTTGTGA +AGGACTGGATGGATCGGATAGAGGAATTCCTGGCTGCAGAGTGTCCATTCTTGCCTAAGC +CAAAGGTTGCCTCAGAAGCCTTCATGTCTACCAACAAGATGTATTTCCTGAACAGGCAGA +GACAAGTCAATGAATCTAAGGTTCAAGACATTATTGATTTGATAGATCATGCTGAAACTG +AGTCTGCTACCTTGTTTACAGAAATTGCAACACCCCATTCAGTCTGGGTGTTTGCATGTG +CGCCTGACCGGTGCCCTCCAACTGCATTGTATGTTGCAGGGGTACCAGAACTTGGTGCAT +TCTTTTCCATTCTTCAGGACATGCGTAATACCATCATGGCATCTAAGTCTGTAGGGACTG +CAGAAGAGAAGCTAAAGAAGAAATCTGCCTTCTATCAATCTTACCTGAGAAGGACACAAT +CTATGGGGATTCAACTGGACCAAAAGATCATAATCCTCTACATGCTCTCATGGGGTAAAG +AAGCTGTGAATCATTTCCATCTTGGTGATGATATGGACCCTGAACTAAGGCAGCTAGCAC +AATCCCTGATTGACACCAAGGTGAAGGAGATCTCCAACCAAGAGCCACTAAAGTTGTAAC +TACTTAATGGAAGTATGATTGAAGAGAGACTTTCCGGGCTTGTGCCACATATTAATCATC +TCAGGATCTATCCTTAATGTGATTAATAGGGTCTTATTATAAGGGCGGTTAAGGGGTCAG +ATACTAACTACGGGTAAGGGTTCATTACTATCCTTTTGCACTAGGGTTAAAGGGCCACTA +CATTGTATTTGCACTACGGGGAATGGGAGGTGGGTTAGTCTATATTGTAGTTGTTAAGTT +TTTGTACTCATAGGTTTATAAGGAATCAGCTATATGAGATCACTGATTGATTGGCTATTT +TTTTTAGGTTAAGTGATTACATTTAAATAGTTGTAAGTTTAGTGTGTTAAGGCCTATAGG +TTAAGATCTACTAACAATTATATTATGTCATTGGATGTAAATTTCGTTCCTGGCTTGCTT +CTGCTTTCGCATTGCTAACCTACAACATAACTACCTCATCCACAAACCCTCCCCTATTCT +ACCTCAACACATACTACCTCATATTTGATTTTTCTTGATTGCTT +>OP493851 +AGTAGACTCCTTGAGAAGCTACTGCTGCGAAAGCTGGAATGAGCACCCTCCAGGAATTAC +AAGAAAACATCACAGCACACGAACAACAGCTCGTGACTGCTCGGCAAAAGCTTAAAGATG +CCGAGAAGGCGGTGGAGGTGGACCCGGATGACGTTAACAAGAGCACACTACAAAGTAGAC +GGGCAGCTGTGTCTACACTGGAGACCAAACTCGGGGAACTCAAGAGGCAACTTGCAGATC +TGGTGGCAGCTCAAAAATTGGCTACAAAACCAGTTGATCCAACAGGGCTTGAGCCTGATG +ACCATCTGAAAGAGAAATCATCTCTGAGATATGGGAATGTCCTGGATGTTAACTCAATTG +ATCTGGAAGAACCAAGTGGACAGACTGCTGATTGGAAGGCTATAGGAGCATACATCTTAG +GGTTTGCAATTCCGATCATACTAAAAGCTCTATATATGCTATCAACCCGTGGGAGACAGA +CTGTGAAAGACAACAAAGGAACCAGGATAAGGTTTAAGGATGATTCTTCCTTTGAAGAGG +TCAATGGGATACGTAAGCCAAAACACCTTTATGTCTCAATGCCAACTGCACAATCTACTA +TGAAGGCTGAAGAAATCACGCCAGGACGGTTTAGGACAATTGCTTGTGGCCTCTTTCCAG +CACAGGTCAAAGCTCGAAATATAATAAGTCCTGTGATGGGAGTAATTGGATTTGGCTTCT +TTGTAAAGGACTGGATGGATCGGATAGAGGAATTCCTGGCTGCAGAGTGTCCATTCCTGC +CTAAGCCAAAGGTTGCCTCAGAAGCCTTCATGTCTACCAACAAAATGTATTTCCTGAACA +GACAAAGACAAGTCAATGAATCTAAAGTTCAAGACATTATTGATTTAATAGATCATGCTG +AAACTGAGTCTGCTACCTTGTTTACGGAAATTGCAACACCCCATTCAGTCTGGGTGTTTG +CATGTGCACCTGACCGGTGCCCTCCAACTGCATTGTATGTTGCAGGGGTACCAGAACTTG +GTGCATTCTTTTCCATTCTTCAGGACATGCGTAATACCATCATGGCATCCAAATCTGTAG +GGACTGCAGAAGAGAAGCTGAAGAAGAAATCCGCTTTCTATCAATCTTACCTAAGAAGGA +CACAATCTATGGGGATTCAACTGGACCAGAAAATCATAATTCTCTACATGCTTTCATGGG +GTAAAGAAGCTGTGAATCATTTCCATCTTGGTGATGATATGGACCCTGAACTAAGGCAGC +TAGCTCAATCCCTGATTGACACCAAGGTGAAGGAGATCTCCAACCAAGAGCCACTTAAGT +TGTAAGTGTTTGATGAAAGGATGATTGAAGAAAGACTTTCCGGGCTTGTGCCACATATTA +ATCATCTCAGGACCTATCCTTAATGTGATTAATAGGGTCTTATTATAAGGGCGGTTAAGG +GGTCAATTACTAACTACGGGTAAGGGTTCATTACTATTTTTTTGCACTAGGGTTAGAGGG +CCACTACATCGTATTTGCACTATGGGAAATGGGAGGTGGGTTAGTCTATATTATAGTTGT +TAAGTTTTTGTATTCATAGGTTAATAAGGAATCAGCTATATGAAATCACTGATTGATTGG +CTATTTTTTTTAGGTTAAGTGATTGCATTTAAATAGTTATTTTTAAGTTTAGTATGTTAA +GGCCTATAGGTTAAGATCTACTAACAATTATATTATGTCATTGGATGTAAATTTCGTTCT +TGGCTCGCTTCTGCTTTCGCATTGCTAACCTACAACATAACTACCTCATCCACGAACCCT +CCCCTATTCTACCTCAACACATACTACCTCACATTTGATTTTTCT +>OP555730 +AGTAGACTCCTTGAGAAGCTACTACTGCAAAAGCTGGAATGAGCACCCTCCAAGAATTAC +AAGAAAATATCACAGCACACGAACAACAGCTCGTGACTGCTCGGCAAAAGCTTAAAGATG +CCGAAAAGACGGTGGAGGTGGACCCGGATGAGGTTAACAAGAGCACACTACAAAGTAGAC +GGGCAGCTGTGTCTACATTGGAGACCAAACTCGGAGAACTCAAGAGGCAGCTTGCCGATT +TGGTGGCAGCTCAAAAACTGGCTACAAAACCAGTTGATCCAACAGGGCTTGAGCCTGATG +ATCATTTGAAGGAAAAATCATCATTGCGTTATGGAAATGTGCTGGATGTCAACTCCATTG +ATCTGGAAGAACCGAGTGGCCAAACTGCTGATTGGAGGGCTATTGGAGCTTACATACTTG +GATTTGCTATTCCTATCATCCTTAAAGCTCTATATATGCTTTCTACTCGTGGGCGACAGA +CTGTTAAAGACAACAAAGGAACCAGGATAAGATTTAAGGATGACTCATCATTTGAGGAGG +TCAACGGCATTAGGAAGCCCAAACATTTATATGTGTCAATGCCAACAGCACAATCAACAA +TGAAGGCAGAGGAAATAACACCAGGTAGGTTCAGAACGATTGCATGTGGCCTCTTCCCTG +CACAAGTGAAAGCTAGAAACATCATTAGCCCTGTGATGGGGGTAATTGGGTTTAGCTTCT +TTGTTAAAGACTGGATGGAAAGGATAGAAGATTTTCTGGCGGCTGAATGCCCATTTTTGC +CCAAGCCTAAAGCTCCATCTGAGGCATTTATGGCTACCAACAAAGCGTATTTCTTGAACA +GGCAGAGGCAAGTCAACGAATCTAAGGTCCAAGATATTGTGGACTTAATTGATCATGCAG +AGACTGAATCGGCAACCCTGTTTACAGATATTGCCACCCCACACTCAGTGTGGGTATTTG +CATGTGCACCGGATCGTTGCCCACCGACAGCATTGTATGTTGCCGGGGTCCCTGAGCTAG +GTGCATTTTTTGCTATTTTGCAAGACATGCGGAATACAATCATGGCATCAAAATCTGTGG +GAACAGCTGAAGAAAAGCTTAAGAAGAAATCTGCCTTCTACCAGTCTTACCTCAGGAGAA +CGCAATCAATGGGAATCCAACTGGATCAGAAGATCATAATCCTCTACATGCTCTCATGGG +GTAAGGAAGCAGTGAACCATTTCCATCTTGGTGACGACATGGACCCTGAACTGAGGCAGC +TTGCTCAATCTCTGATTGATACTAAGGTGAAGGAAATTTCAAATCAAGAGCCATTGAAGC +TGTAAGAGCCAACAGCATGTAGGTGCTACAGTAACTGGATAGGTTGGATGGTCTTTCTGG +GCTTGAGCCACATATTTAATCATCTCAGGACCTTTAATGTGATTAATGCGGGTTTATTAT +AAGGGTGGTAAGTGGGTTTCAATTACTAACTACGGGTAAGGGACACTACTATCCTTTGCA +CTGGGGTTAAGGGCCATTATCTTATATTTGCACTACTTGGGGTTGGGATAATGGGTAGAA +TTATAGTTCATAAGTTAGCATTATAATAGTCCTAGGTTAAGTATAGGTTTTGATTAGGTA +AGTAATTAGCCATATGAAATCAATGATTGATTGGCTTGCATTTATTGATAATTAGCATTT +AATTGTAGATTAAGTTTAATTGTTAATGTTTTTAGGTTAAGATTAACTAACAATCATTTA +CTCTATTGGATGTAAATTTCGTTCATTGCTTTGCTGCTTCTGCTACACTAACCTACAACA +AAACTACCTCATCCACTACCCCTCCCCTTATCTACCTCAAATAAAACTACCTCAAATTCG +ATTTCTCTTGATTGCTTTTCA diff --git a/data_output/nextstrain/orthohantavirus/andv/s/unreleased/tree.json b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/tree.json new file mode 100644 index 000000000..0396df329 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/tree.json @@ -0,0 +1 @@ +{"version": "v2", "meta": {"title": "Andes Virus S Segment (ANDV)", "updated": "2026-05-12", "build_url": "https://github.com/nextstrain/andv", "data_provenance": [{"name": "Pathoplexus", "url": "https://pathoplexus.org/"}], "maintainers": [{"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}], "display_defaults": {"map_triplicate": false, "color_by": "outbreak", "distance_measure": "div"}, "genome_annotations": {"N": {"end": 1329, "seqid": "defaults/s/reference.gb", "start": 43, "strand": "+", "type": "CDS"}, "NSs": {"end": 313, "seqid": "defaults/s/reference.gb", "start": 122, "strand": "+", "type": "CDS"}, "nuc": {"end": 1871, "start": 1, "strand": "+", "type": "source"}}, "colorings": [{"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "date", "title": "Collection Date", "type": "categorical"}, {"key": "region", "title": "Region", "type": "categorical", "scale": [["Africa", "#CEB541"], ["Europe", "#E39B39"], ["South America", "#E56C2F"]]}, {"key": "country", "title": "Country", "type": "categorical"}, {"key": "division", "title": "Admin Division", "type": "categorical"}, {"key": "host", "title": "Host", "type": "categorical"}, {"key": "abbr_authors", "title": "Authors", "type": "categorical"}, {"key": "dataUseTerms", "title": "Data use terms", "type": "categorical"}, {"key": "restrictedUntil", "title": "Restricted Until", "type": "categorical"}, {"key": "date_released", "title": "Release Date", "type": "categorical"}, {"key": "length", "title": "Length", "type": "continuous"}, {"key": "INSDC_accession", "title": "INSDC Accession", "type": "categorical"}, {"key": "PPX_accession", "title": "Pathoplexus Accession", "type": "categorical"}, {"key": "institution", "title": "Author Affiliations", "type": "categorical"}, {"key": "totalAmbiguousNucs", "title": "Ambiguous Nucleotides", "type": "continuous"}, {"key": "outbreak", "title": "outbreak", "type": "categorical"}], "filters": ["country", "division", "host", "abbr_authors", "clade_membership"], "geo_resolutions": [{"key": "country", "demes": {"Bolivia": {"latitude": -17.0568696, "longitude": -64.9912286}, "Brazil": {"latitude": -10.3333332, "longitude": -53.1999999}, "Paraguay": {"latitude": -23.3165935, "longitude": -58.1693445}, "Peru": {"latitude": -9.650468, "longitude": -75.328211}, "Netherlands": {"latitude": 52.1326, "longitude": 5.2913}, "Argentina": {"latitude": -37.052315, "longitude": -64.869142}, "Switzerland": {"latitude": 46.8182, "longitude": 8.2275}, "Uruguay": {"latitude": -33.0, "longitude": -56.0}, "Chile": {"latitude": -31.7613364, "longitude": -71.3187696}, "South Africa": {"latitude": -28.8166235, "longitude": 24.991639}}}], "panels": ["tree", "entropy"], "extensions": {"nextclade": {"clade_node_attrs": [{"name": "outbreak", "displayName": "Outbreak", "description": "Annotation of recent outbreaks (to be refined)", "skipAsReference": false}], "placement_masks": [{"begin": 0, "end": 42}, {"begin": 1329, "end": 1871}]}}}, "tree": {"name": "NODE_0000000", "node_attrs": {"div": 0, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G28A", "G63A", "C72T", "C106A", "A111G", "G120A", "G133A", "A135C", "C156G", "T225C", "A234G", "T244C", "T262C", "T306C", "A312G", "T354C", "A360C", "T367C", "A384T", "G387A", "A408T", "A411G", "A414T", "C420A", "T421C", "G426A", "G438A", "C453T", "T454C", "G465T", "A468C", "A480G", "A483G", "T486A", "G489C", "G510A", "T531A", "A555T", "T558G", "A561G", "A567G", "C570T", "T573G", "C576T", "G597A", "T603A", "G609A", "A618G", "C621A", "G624A", "C631A", "A633G", "G639A", "T648A", "C654G", "T657A", "T660C", "A663T", "G669A", "C672G", "C679A", "A687C", "A690T", "T696A", "A699C", "A705G", "A714G", "G718A", "A729G", "T735C", "T744A", "C745A", "G756T", "T759C", "G762A", "T774C", "A792T", "G796A", "T797C", "C798T", "G799C", "C801A", "A804T", "C810A", "T817G", "A829G", "T830C", "G831T", "T837C", "A846G", "A855G", "C858A", "A859G", "G870A", "T873C", "T879C", "T882A", "A883G", "C885G", "T888C", "T889C", "A894T", "A907T", "C909T", "T915A", "T918A", "T922C", "G933A", "A939C", "A942C", "C954G", "G960A", "T975A", "C978T", "C979A", "T987A", "T993A", "T1005A", "A1008T", "G1017A", "T1023G", "A1029C", "T1032C", "T1036G", "C1054A", "T1056A", "T1074A", "A1077G", "A1083G", "G1086A", "A1104C", "A1110G", "A1128G", "A1140G", "A1149G", "A1158G", "G1173A", "A1200T", "A1209G", "T1221C", "C1224T", "C1248T", "A1254G", "C1257T", "G1260A", "A1266T", "A1269T", "T1273G", "C1276T", "C1281T", "C1302T", "C1305A", "A1317T", "C1318T", "T1320A", "T1324C", "G1329A", "C1333G", "A1356T", "T1380C", "A1400-", "T1401-", "T1417C", "C1436T", "A1437G", "T1440A", "A1442G", "G1447T", "G1450C", "G1451A", "T1462C", "G1469-", "G1470-", "C1480T", "A1500-", "A1506-", "C1507T", "G1514A", "A1531-", "G1534T", "G1535C", "G1538T", "G1539A", "G1542C", "G1551A", "T1568A", "T1588-", "G1589T", "G1592T", "T1607A", "C1612G", "G1634-", "T1636-", "G1645A", "T1657-", "G1666A", "G1670T", "T1681-", "T1685-", "G1687-", "G1688-", "C1707T", "G1740T", "G1745-", "C1746-", "T1748G", "A1759T", "T1760A", "G1762A", "G1777A", "C1787T", "T1792A", "A1804T"], "N": ["D38E", "G226S", "D234E", "E238D", "V252T", "A253P", "S259A", "M263A", "N273D", "K276Q", "I281V", "T289S", "T300S", "S332A"], "NSs": ["R3K", "R7K", "R10Q", "T12R", "S32L", "N34S", "L35S", "I62T"]}, "labels": {"aa": "N: D38E, G226S, D234E, E238D, V252T, A253P, S259A, M263A, N273D, K276Q, I281V, T289S, T300S, S332A; NSs: R3K, R7K, R10Q, T12R, S32L, N34S, L35S, I62T"}}, "children": [{"name": "NODE_0000001", "node_attrs": {"div": 0.0287492, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A78C", "T105C", "G150A", "A222G", "C244T", "T390A", "A423G", "T465G", "G477A", "A492G", "T519C", "C546A", "G573T", "A597G", "A642T", "A681G", "G714T", "A801T", "A807G", "A858T", "A868C", "A875C", "G885A", "C888A", "C941G", "G1011A", "T1044A", "C1135T", "A1137G", "T1152A", "C1161T", "A1197G", "A1212G", "G1263A", "C1344T", "A1396G", "C1403-", "T1404-", "C1459T", "G1501-", "G1502-", "C1504-", "C1505-", "T1507-", "T1513-", "A1514-", "G1529-", "A1530-", "A1581G", "A1601G", "T1621C", "G1622A", "-1634T", "-1657T", "G1680-"], "N": ["Q278P"], "NSs": ["N38S"]}, "labels": {"aa": "N: Q278P; NSs: N38S"}}, "children": [{"name": "PP_006VQ61|14403|nan/XXXX-XX-XX", "node_attrs": {"div": 0.13292, "strain": {"value": "PP_006VQ61|14403|nan/XXXX-XX-XX"}, "accession": "PP_006VQ61", "author": {"author": "Bohlman, M. C.; Morzunov, S. P.; Meissner, J.; Taylor, M. B.; Ishibashi, K.; Rowe, J.; Levis, S.; Enria, D.; St Jeor, S. C.; Meissner, J. D.; St. Jeor, S. C.", "value": "Bohlman, M. C.; Morzunov, S. P.; Meissner, J.; Taylor, M. B.; Ishibashi, K.; Rowe, J.; Levis, S.; Enria, D.; St Jeor, S. C.; Meissner, J. D.; St. Jeor, S. C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Bohlman et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2002-02-27"}, "length": {"value": 1860}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "University of Nevada, Reno, Microbiology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VQ61.1", "url": "https://pathoplexus.org/seq/PP_006VQ61.1"}, "INSDC_accession": {"value": "AF482717.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF482717.1"}}, "branch_attrs": {"mutations": {"nuc": ["G33A", "A63G", "G93T", "G99C", "G114A", "G141A", "G156A", "T159C", "C172T", "A189G", "C216T", "A261G", "A268G", "A273G", "A318G", "C328T", "A333G", "C346T", "T357C", "T366C", "G369T", "G402A", "T405A", "C417T", "C444A", "A447G", "G450A", "T453A", "C463T", "G465A", "G483A", "C489T", "G504C", "G522A", "A543G", "T555C", "A564G", "G567A", "C579T", "T591A", "G618A", "A630C", "A648T", "A657T", "G672T", "A675G", "C687A", "T717C", "T726C", "G729C", "G747A", "A750T", "C760T", "C774T", "A777G", "C780T", "T781C", "G795A", "T798C", "C799A", "T801C", "G817T", "T819A", "C822T", "C838T", "G840A", "T884C", "T894A", "C897A", "T900G", "T903G", "G906A", "C921T", "C922T", "G924A", "T927C", "C939A", "C945T", "G954A", "G981A", "A987G", "A990T", "A996C", "T997C", "A1005T", "T1008A", "G1023T", "T1026G", "C1032T", "C1041A", "G1047A", "A1056G", "T1059C", "C1062A", "C1065A", "T1080G", "G1083C", "A1086G", "A1113G", "C1119T", "A1138C", "G1143A", "A1146C", "A1164G", "C1165T", "C1170T", "A1173G", "C1179T", "T1188C", "C1191T", "C1195T", "T1200A", "T1206A", "G1218C", "C1221T", "C1227T", "T1257C", "T1266G", "T1284C", "T1287A", "G1290A", "G1293A", "A1305T", "T1317A", "A1320G", "G1323A", "C1324T", "T1334A", "T1338G", "A1340G", "A1341C", "T1343G", "T1350G", "G1351C", "A1352T", "A1353T", "A1355G", "T1356A", "A1357C", "A1359G", "C1360T", "C1364T", "C1398T", "C1402-", "A1407C", "T1413A", "A1440G", "A1441T", "G1442-", "T1448C", "C1450T", "G1471-", "T1472-", "T1473-", "C1474-", "T1485-", "T1486-", "G1493T", "G1494T", "G1495T", "A1498T", "-1500A", "G1503-", "C1510A", "-1513A", "A1526C", "G1527A", "C1535T", "G1536T", "T1538A", "G1541A", "G1543T", "G1547T", "T1548A", "T1550G", "A1551T", "G1558-", "T1563A", "A1565T", "G1566C", "T1567C", "T1572A", "C1578T", "T1580G", "A1587G", "-1588T", "T1589C", "G1591T", "T1595C", "T1620C", "T1629A", "G1633A", "-1636T", "G1639T", "T1640C", "A1655G", "G1656T", "A1664T", "T1671A", "A1672G", "G1674A", "T1675A", "G1679T", "-1680C", "-1681C", "T1683G", "A1686-", "T1689-", "T1690-", "A1691-", "A1692-", "G1693-", "T1696A", "C1699T", "T1707-", "G1715A", "T1716C", "T1719A", "T1739A", "C1763T", "A1778G", "C1791T", "C1797T", "A1815C", "C1816A", "T1834C"], "N": ["Q17H", "A31T", "T76A", "P253T", "A259S", "V281A", "D282E", "D285E", "H286Q", "S411A"], "NSs": ["K3R", "Q5P", "R12K", "L13S", "Q23R", "N47S", "N51S"]}, "labels": {"aa": "N: Q17H, A31T, T76A, P253T, A259S, V281A, D282E, D285E, H286Q, S411A; NSs: K3R, Q5P, R12K, L13S, Q23R, N47S, N51S"}}}, {"name": "NODE_0000002", "node_attrs": {"div": 0.0597113, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A28G", "C50A", "C126A", "G129A", "G132A", "A133G", "G141T", "A178G", "T198A", "C292A", "C360T", "G378A", "T384A", "T396C", "C454T", "C468A", "C507T", "G577A", "A582T", "A627T", "C655T", "A679C", "C735T", "T819C", "T834C", "G840T", "C879T", "A975T", "C1102T", "C1104A", "G1128A", "A1131T", "G1140A", "A1141C", "T1188G", "A1272G", "C1378T", "-1401T", "A1451T", "C1542T", "A1568T", "T1582-", "T1668C", "-1687T", "C1767T", "A1770T", "C1830A"], "N": ["T3N", "E33D", "S46G", "L84I", "V179I"], "NSs": ["P2Q", "R4K", "L26Q"]}, "labels": {"aa": "N: T3N, E33D, S46G, L84I, V179I; NSs: P2Q, R4K, L26Q"}}, "children": [{"name": "PP_006VQ53|13796|nan/XXXX-XX-XX", "node_attrs": {"div": 0.159354, "strain": {"value": "PP_006VQ53|13796|nan/XXXX-XX-XX"}, "accession": "PP_006VQ53", "author": {"author": "Bohlman, M. C.; Morzunov, S. P.; Meissner, J.; Taylor, M. B.; Ishibashi, K.; Rowe, J.; Levis, S.; Enria, D.; St Jeor, S. C.; Meissner, J. D.; St. Jeor, S. C.", "value": "Bohlman, M. C.; Morzunov, S. P.; Meissner, J.; Taylor, M. B.; Ishibashi, K.; Rowe, J.; Levis, S.; Enria, D.; St Jeor, S. C.; Meissner, J. D.; St. Jeor, S. C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Bohlman et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2002-02-27"}, "length": {"value": 1869}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "University of Nevada, Reno, Microbiology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VQ53.1", "url": "https://pathoplexus.org/seq/PP_006VQ53.1"}, "INSDC_accession": {"value": "AF482716.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF482716.1"}, "host": {"value": "Argentine bolo mouse"}}, "branch_attrs": {"mutations": {"nuc": ["G19T", "C32T", "G33A", "A63G", "G66A", "A69G", "C78T", "G93A", "T117G", "T141C", "C168T", "A181C", "C216T", "G231A", "A240T", "T243C", "T327C", "C328T", "G348T", "T366C", "A390C", "G411A", "T414A", "A426T", "A438G", "A456G", "A486G", "A501G", "A513T", "G516A", "C534T", "C556A", "T573C", "T576C", "T582C", "A588G", "A594T", "A615G", "A630G", "T642G", "C647T", "G654A", "A657G", "C660T", "A666T", "T690A", "T693C", "C699G", "A708C", "C720T", "A745C", "A753G", "A755G", "T756A", "C760T", "A762G", "T765A", "A768G", "G771A", "A777T", "T792C", "G795A", "T798A", "C799G", "T802G", "G808A", "T831A", "C837T", "C838T", "G849A", "A850C", "A852C", "A864G", "A882T", "A885T", "G891T", "T900G", "A915T", "A918C", "T936A", "C939T", "A960G", "C984T", "A990G", "G999A", "A1005G", "T1008A", "A1014G", "A1020G", "G1023A", "C1032T", "T1038C", "C1041A", "G1047A", "C1050T", "C1065T", "T1089A", "A1092T", "A1095G", "T1116A", "C1119A", "C1125T", "C1134T", "G1143A", "A1173G", "A1182C", "C1191T", "C1195T", "G1254A", "C1255T", "T1257G", "T1266A", "T1269A", "G1278A", "G1290A", "T1302C", "A1311G", "A1320G", "G1333-", "T1335C", "A1340T", "A1342G", "T1346G", "G1347T", "A1348C", "G1351A", "A1353T", "A1357G", "A1359G", "C1360T", "C1365A", "C1380T", "A1381G", "C1397G", "-1400G", "A1407C", "T1423G", "T1424A", "T1439G", "C1450A", "T1451C", "T1453-", "A1467T", "-1469C", "-1470T", "T1473C", "A1475T", "T1496G", "T1497A", "-1500T", "-1501G", "-1502G", "-1504G", "-1505A", "-1506T", "-1507A", "-1514G", "T1517G", "T1519-", "G1520-", "C1523G", "A1526T", "G1528T", "G1536A", "G1543A", "T1549G", "A1551G", "A1564T", "T1569G", "T1574-", "A1575-", "A1576-", "T1577-", "C1578-", "A1579-", "T1580-", "G1581-", "T1584G", "-1588G", "T1592C", "T1595C", "C1599T", "G1612A", "G1614A", "T1617C", "G1623A", "A1626-", "T1627-", "T1628-", "T1629-", "T1630-", "A1637-", "A1641C", "G1648A", "T1649C", "T1650C", "A1653T", "G1656T", "T1657A", "G1659C", "T1660A", "G1661-", "A1665T", "A1666G", "T1667C", "A1669T", "T1673A", "T1676C", "-1685A", "-1688C", "T1689A", "A1691T", "T1696A", "T1697C", "C1703T", "A1705C", "T1712C", "A1713T", "G1715A", "A1718C", "T1719A", "T1739G", "C1756A", "T1769A", "C1771A", "A1778C", "A1793G", "C1794A", "C1799T", "T1804-", "C1816A", "C1818A", "A1829G", "T1833A", "T1853C"], "N": ["A202V", "D238G", "P253A", "S254A", "A256T", "L266F", "D282E", "H286Q", "S411A"], "NSs": ["Q5P", "K7T", "A16V", "G37D", "Q40L", "I41T"]}, "labels": {"aa": "N: A202V, D238G, P253A, S254A, A256T, L266F, D282E, H286Q, S411A; NSs: Q5P, K7T, A16V, G37D, Q40L, I41T"}}}, {"name": "NODE_0000003", "node_attrs": {"div": 0.142686, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T72C", "C135A", "G138T", "C172T", "A189G", "C210A", "A219G", "C225T", "T237G", "G249T", "A252G", "A260G", "A268T", "G312A", "T327A", "C345G", "G369T", "A375G", "A387G", "T393A", "T405A", "A420C", "C421T", "T435C", "A438T", "C441T", "C444A", "T453C", "C459T", "C489G", "G504C", "A546G", "G561A", "A603C", "T636C", "A639G", "A718G", "G732A", "C759T", "T765C", "G766T", "A768T", "C780T", "G789A", "C797A", "T804A", "C822T", "T825C", "T840C", "G846A", "G851A", "A852G", "G855A", "A876C", "A888T", "C889T", "G891A", "G906A", "T907G", "C922T", "G924A", "C929A", "C945A", "A951T", "G954A", "A972T", "G1012A", "A1017T", "C1021T", "T1038G", "C1042T", "A1044G", "A1056G", "A1074C", "T1080A", "G1083T", "A1086G", "G1098A", "A1152C", "T1161A", "G1176A", "C1186T", "T1200C", "G1209A", "T1233G", "T1251A", "A1258C", "A1260T", "G1273T", "T1275A", "G1293T", "G1330A", "T1331C", "A1341G", "T1343-", "T1344-", "A1345-", "T1350C", "A1352C", "T1370C", "T1371A", "A1393C", "-1400C", "-1403T", "-1404T", "A1406-", "G1409A", "G1411-", "T1413C", "A1415C", "G1442A", "T1452A", "A1467-", "A1478G", "T1480C", "A1481-", "T1482C", "G1493-", "T1497C", "A1509-", "C1510-", "A1511G", "T1512-", "A1525G", "A1532-", "T1534C", "G1541T", "A1553G", "G1561A", "A1575G", "A1586C", "T1589-", "A1590-", "A1593C", "T1627G", "T1628A", "T1631C", "T1634G", "-1636G", "A1638T", "G1639A", "A1647-", "G1648-", "A1652T", "A1653G", "A1655T", "G1661A", "A1665G", "T1667A", "T1670G", "G1674-", "T1675-", "T1676-", "G1679T", "-1680T", "-1681G", "T1683C", "-1685T", "-1688G", "T1707G", "T1759A", "A1760T", "A1777G", "C1797T"], "N": ["K73R", "T76S", "S226A", "A242S", "T252N", "R270K", "S289A", "T296K", "V324L", "E424G"], "NSs": ["W6L", "K7M", "Q23R", "P30Q", "L32S", "E33G", "S35L", "L39W", "W43L", "Q44R", "N47D"]}, "labels": {"aa": "N: K73R, T76S, S226A, A242S, T252N, R270K, S289A, T296K, V324L, E424G; NSs: W6L, K7M, Q23R, P30Q, L32S, E33G, S35L, L39W, W43L, Q44R, N47D"}}, "children": [{"name": "PP_006VX14|LBCE 9480|Brazil/2006-XX-XX", "node_attrs": {"div": 0.19338, "strain": {"value": "PP_006VX14|LBCE 9480|Brazil/2006-XX-XX"}, "accession": "PP_006VX14", "author": {"author": "Guterres, A.; de Oliveira, R. C.; Fernandes, J.; Schrago, C. G.; de Lemos, E. R.; Oliveira, R. C.; Lemos, E. R. S.", "value": "Guterres, A.; de Oliveira, R. C.; Fernandes, J.; Schrago, C. G.; de Lemos, E. R.; Oliveira, R. C.; Lemos, E. R. S."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2006-XX-XX"}, "abbr_authors": {"value": "Guterres et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2015-09-15"}, "country": {"value": "Brazil"}, "region": {"value": "South America"}, "division": {"value": "Goias State"}, "length": {"value": 1858}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Instituto Oswaldo Cruz - FIOCRUZ, Laboratorio de Hantaviroses e Rickettsioses"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VX14.1", "url": "https://pathoplexus.org/seq/PP_006VX14.1"}, "INSDC_accession": {"value": "KP202360.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/KP202360.1"}, "host": {"value": "hairy-tailed bolo mouse"}}, "branch_attrs": {"mutations": {"nuc": ["G165A", "C235T", "G297A", "C306T", "C310T", "A318G", "G330T", "C354T", "A372G", "C471T", "G483A", "A513T", "T555C", "T576C", "T651C", "G654T", "T663A", "G672A", "A675G", "T684C", "T690C", "T714C", "G719C", "C720A", "C723T", "A744G", "G747A", "G771A", "T786C", "T801C", "C837T", "C843T", "A844C", "A870G", "C876T", "A915G", "C921T", "A930G", "A954T", "T963C", "T972C", "G981A", "A990G", "T1008C", "A1014G", "C1050T", "C1065T", "C1074T", "G1077A", "G1086C", "A1104G", "C1119T", "C1122T", "C1134T", "G1197A", "G1218A", "T1230C", "T1248C", "G1254A", "T1260C", "G1299-", "T1302C", "G1323A", "C1331-", "G1333A", "T1335A", "G1339T", "-1343C", "-1344G", "-1345G", "A1348G", "C1350G", "C1352T", "A1353C", "A1357G", "A1359T", "C1364T", "C1369T", "C1370G", "T1373A", "C1393T", "G1394A", "C1397G", "C1400A", "-1406T", "T1410-", "C1417-", "T1423C", "T1425A", "A1441G", "A1442T", "A1452G", "T1453C", "A1468-", "G1471-", "C1474A", "A1475C", "T1477G", "G1478T", "C1482-", "T1483-", "-1493T", "G1495-", "G1503-", "T1508-", "G1511-", "G1525C", "A1526G", "-1529G", "-1530G", "-1531T", "C1534G", "C1535G", "T1538C", "A1539C", "T1545A", "G1547C", "T1548C", "T1549A", "A1551G", "G1553-", "T1555G", "A1561-", "A1565T", "T1569A", "T1570A", "G1575C", "T1577A", "C1578A", "G1581T", "-1582T", "C1586T", "-1588A", "-1589G", "-1590T", "C1593T", "T1595A", "T1602C", "C1624T", "C1631-", "T1644C", "A1694G", "T1697C", "C1717A", "A1721G", "T1739C", "T1755-", "T1803C", "T1833C", "G1835T"], "N": ["L324M"], "NSs": ["R15K", "S59N", "T62I"]}, "labels": {"aa": "N: L324M; NSs: R15K, S59N, T62I"}}}, {"name": "PP_006VR9U|P5/Cajuru|Brazil/XXXX-XX-XX", "node_attrs": {"div": 0.182833, "strain": {"value": "PP_006VR9U|P5/Cajuru|Brazil/XXXX-XX-XX"}, "accession": "PP_006VR9U", "author": {"author": "de Sousa, R. L.; Moreli, M. L.; Borges, A. A.; Campos, G. M.; Livonesi, M. C.; Figueiredo, L. T.; Pinto, A. A.; Sousa, R. L. M.; Figueiredo, L. T. M.", "value": "de Sousa, R. L.; Moreli, M. L.; Borges, A. A.; Campos, G. M.; Livonesi, M. C.; Figueiredo, L. T.; Pinto, A. A.; Sousa, R. L. M.; Figueiredo, L. T. M."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "de Sousa et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2007-05-22"}, "country": {"value": "Brazil"}, "region": {"value": "South America"}, "division": {"value": "Sao Paulo State"}, "length": {"value": 1858}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Universidade de Sao Paulo, Centro de Pesquisa em Virologia"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VR9U.1", "url": "https://pathoplexus.org/seq/PP_006VR9U.1"}, "INSDC_accession": {"value": "EF571895.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/EF571895.1"}}, "branch_attrs": {"mutations": {"nuc": ["G156A", "G222A", "G231A", "A324G", "T357C", "T358C", "T363C", "A384C", "A426T", "G492A", "A501G", "A510G", "G552A", "T591A", "G597A", "A708G", "A777T", "T792C", "C813T", "C819A", "G828A", "G849A", "A864G", "C873T", "T927C", "A933G", "C942T", "T978C", "A993T", "G999A", "A1011G", "A1012T", "C1041T", "G1101A", "G1110A", "C1125T", "G1137A", "G1149A", "G1158A", "C1165T", "C1185T", "A1263G", "T1287C", "A1313G", "G1314A", "T1317C", "A1328G", "G1332A", "T1334C", "A1337T", "A1340G", "A1342-", "G1351C", "G1354C", "A1355C", "T1356C", "G1358C", "C1360G", "T1361C", "T1362C", "T1363C", "G1372A", "G1374C", "T1378-", "A1379-", "C1380-", "A1381-", "T1382-", "A1384G", "A1385C", "T1386C", "T1389C", "T1391C", "G1395A", "C1402A", "A1407-", "A1409T", "-1411C", "A1416C", "T1424A", "T1428C", "A1429T", "T1430C", "A1432C", "G1433A", "G1434C", "T1436C", "A1440C", "A1441C", "G1444C", "T1447G", "T1448C", "C1455A", "T1459C", "A1461C", "G1463C", "G1464-", "G1465-", "T1466-", "-1469G", "-1470G", "T1473C", "T1476C", "-1481C", "T1484C", "T1485G", "T1486C", "G1487C", "A1489C", "A1492-", "A1499T", "-1500A", "-1501T", "-1502C", "-1504C", "-1505C", "-1506A", "-1507C", "-1509C", "-1510G", "-1512G", "-1513G", "-1514G", "T1515C", "A1516T", "T1517G", "T1518C", "T1519G", "C1523-", "G1527T", "G1528T", "-1529T", "-1530C", "-1531A", "-1532T", "T1533C", "G1536C", "T1542G", "G1543-", "T1544-", "G1558A", "T1559A", "G1566C", "T1571A", "T1572C", "A1573G", "A1576C", "T1580C", "A1587C", "G1591-", "T1592G", "A1594C", "T1596C", "T1600C", "G1601T", "T1602G", "A1607-", "A1611C", "G1612C", "A1619G", "T1620A", "C1621T", "A1622C", "T1625A", "T1629C", "G1636A", "A1641C", "T1643C", "A1645C", "T1646A", "T1654C", "A1661T", "C1668A", "A1678C", "T1679C", "T1682C", "T1690C", "A1691C", "T1696C", "A1704C", "G1715-", "T1716-", "T1720G", "T1736C", "T1740G", "G1741C", "C1742T", "-1745G", "-1746C", "T1747A", "G1748-", "C1749-", "T1750-", "C1756-", "A1762G", "T1787C", "C1802T", "T1834-", "T1848-", "T1853C"], "N": ["S106P", "A226G"], "NSs": ["R12K", "S34N", "G37D"]}, "labels": {"aa": "N: S106P, A226G; NSs: R12K, S34N, G37D"}}}]}]}]}, {"name": "NODE_0000004", "node_attrs": {"div": 0.0157484, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A106C", "G111A", "C135G", "G480A", "G654C", "A696T", "A796G", "G859A", "T907A", "C1029T", "G1149A", "T1200A", "T1317A", "G1333C", "C1380T", "C1417T", "-1469G", "-1470G", "-1506A", "-1531A", "T1534G", "C1535G", "C1542G", "A1568T", "-1588T", "G1612C", "A1666G", "T1670G", "-1681T"], "N": ["D273N", "Q276K", "S289T", "S300T"], "NSs": ["K7R", "Q10R", "L32S", "S34N"]}, "labels": {"aa": "N: D273N, Q276K, S289T, S300T; NSs: K7R, Q10R, L32S, S34N"}}, "children": [{"name": "NODE_0000005", "node_attrs": {"div": 0.0440953, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G129A", "T435A", "G450A", "A486T", "C534A", "G552T", "T555C", "A564T", "T591A", "C600A", "A609G", "A615G", "T684C", "T765A", "A768T", "G828A", "T867A", "T903A", "A933C", "A979C", "G981T", "A996C", "G999A", "A1014T", "A1054C", "T1089A", "A1092T", "T1215A", "T1242C", "G1273T", "T1331A", "G1419C", "T1422G", "T1472A", "T1473A", "T1476C", "T1483C", "C1510T", "A1511T", "T1582A", "T1600C", "G1633-", "G1639-", "A1651T", "A1655-", "G1656-", "T1658-", "A1710T", "T1711A", "T1716C", "A1721G", "A1734G", "C1738A", "T1820A", "C1830A", "A1831T", "T1840C"], "N": ["A31T", "E297D"], "NSs": ["Q5R"]}, "labels": {"aa": "N: A31T, E297D; NSs: Q5R"}}, "children": [{"name": "PP_006W0VA|VARS/22-01|Brazil/2022-12-09", "node_attrs": {"div": 0.132861, "strain": {"value": "PP_006W0VA|VARS/22-01|Brazil/2022-12-09"}, "accession": "PP_006W0VA", "author": {"author": "Amgarten, D.; Dorlass, E.; dos Santos Soares, A. C.; Moreira Salles, A. P.; Takara, A.; da Silva Santos, A.; Oliveira Sartori, B. S.; Petroni, R. C.; Sallum Filho, C. F. C.; Hidal, J. T.; Camargo, L. F. A.; Doi, A.; Rebello Pinho, J. R.", "value": "Amgarten, D.; Dorlass, E.; dos Santos Soares, A. C.; Moreira Salles, A. P.; Takara, A.; da Silva Santos, A.; Oliveira Sartori, B. S.; Petroni, R. C.; Sallum Filho, C. F. C.; Hidal, J. T.; Camargo, L. F. A.; Doi, A.; Rebello Pinho, J. R."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2022-12-09"}, "abbr_authors": {"value": "Amgarten et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-01-18"}, "country": {"value": "Brazil"}, "region": {"value": "South America"}, "length": {"value": 1912}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Hospital Israelita Albert Einstein, Varsomics"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0VA.1", "url": "https://pathoplexus.org/seq/PP_006W0VA.1"}, "INSDC_accession": {"value": "OQ092245.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OQ092245.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T24A", "A42C", "T61C", "T62A", "C75T", "G99C", "C115T", "T117G", "C125A", "G135T", "G136C", "G138C", "T143A", "G156A", "C216T", "A222G", "G234A", "C262T", "G312A", "A321G", "T327G", "A333G", "G369A", "A372G", "A375G", "T396C", "T405C", "C413T", "T414G", "C441T", "C454T", "T465A", "C471T", "C507A", "A508C", "T537C", "C555A", "G558A", "T570C", "C579T", "A582C", "A621C", "A627T", "G633A", "A639G", "A657G", "C660T", "A669G", "G672A", "A675G", "C678A", "T693C", "G714T", "T717C", "C723T", "G729C", "G732A", "C735A", "T756C", "T792C", "G796A", "T804A", "A807G", "G817T", "T831C", "T834C", "C837T", "G840A", "A858T", "A864C", "A876G", "G885C", "C889T", "G906A", "C908T", "T909C", "C945T", "T978C", "C996T", "G1011A", "C1021T", "C1050T", "A1056T", "T1059C", "C1065T", "A1074T", "A1086T", "A1089G", "G1110A", "C1119T", "C1122T", "C1135T", "G1140A", "A1141C", "G1143A", "A1146T", "A1149G", "T1152C", "A1164G", "G1167T", "C1170T", "G1176A", "C1179T", "C1185T", "G1209A", "G1218T", "T1233C", "G1254A", "A1260G", "T1275A", "T1284C", "G1296A", "T1302C", "T1334C", "G1339C", "A1359T", "C1365T", "C1378A", "C1397-", "C1398-", "-1400A", "A1418T", "T1425C", "T1427C", "A1429C", "T1430G", "A1432-", "A1468T", "A1516G", "A1526C", "G1561A", "T1568G", "T1570A", "T1571G", "T1572G", "T1577G", "C1578T", "A1579G", "T1584C", "G1591T", "T1592G", "A1593T", "T1602A", "T1620C", "T1627A", "T1629A", "T1635-", "A1637-", "-1639T", "A1642T", "T1644C", "A1645T", "T1650A", "G1659-", "T1660-", "A1664T", "G1666A", "G1670-", "T1673G", "G1680T", "T1683G", "-1685T", "-1687G", "-1688G", "C1703T", "-1745G", "-1746C", "G1751T", "T1753A", "T1755-", "C1756-", "T1759C", "T1769A", "T1787C", "C1791A", "T1805G", "C1816-", "C1818T"], "N": ["L7Q", "A28D", "V32L", "V34E", "A124V", "D231E", "A259S", "E274D", "T289I"], "NSs": ["P2T", "R5L", "W6S", "W8R", "R12K", "S32L", "N34S"]}, "labels": {"aa": "N: L7Q, A28D, V32L, V34E, A124V, D231E, A259S, E274D, T289I; NSs: P2T, R5L, W6S, W8R, R12K, S32L, N34S"}}}, {"name": "NODE_0000006", "node_attrs": {"div": 0.0614475, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C306T", "T357C", "T519C", "A543G", "C579G", "T636C", "A657C", "A762G", "G771A", "C879T", "G891C", "C921A", "A1005T", "A1020G", "C1062A", "G1098A", "T1206C", "T1399-", "C1403T", "A1530G", "T1562A", "C1612T", "A1817T"], "N": ["T252A"], "NSs": ["T62I"]}, "labels": {"aa": "N: T252A; NSs: T62I"}}, "children": [{"name": "NODE_0000007", "node_attrs": {"div": 0.12948, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T61C", "C172T", "C225T", "A240G", "G315A", "G330C", "A331C", "A333T", "G369T", "A375G", "G378A", "G402A", "T414C", "C421T", "A432C", "A447G", "A456C", "A501G", "C507T", "T528C", "T549C", "G561A", "T564G", "G573C", "A591T", "G615A", "A627T", "A631C", "A639G", "C654A", "A681G", "T690C", "T696A", "G705A", "T711C", "C735T", "A750T", "A753G", "G789A", "T792C", "T798A", "C799T", "C800T", "A801G", "C822T", "C843T", "G849A", "A850C", "A852G", "A858G", "A864T", "G885T", "C908T", "G912A", "G924T", "T927C", "C939A", "C942T", "G954T", "T963C", "T981C", "A990G", "T1008A", "A1017T", "G1023A", "T1026G", "T1038C", "G1083A", "G1101A", "A1113G", "C1119A", "A1141C", "G1158A", "A1200C", "T1257C", "G1263A", "T1275C", "T1287C", "G1293T", "G1299A", "A1341G", "A1345T", "T1350G", "A1352T", "A1355T", "T1356C", "C1397A", "T1427C", "G1433A", "T1436-", "G1437-", "T1439G", "A1440T", "A1441G", "T1449C", "C1450A", "A1472G", "C1476T", "C1479-", "T1480-", "C1504T", "T1511C", "T1517G", "A1532T", "T1571G", "A1576G", "C1578A", "A1579G", "T1585A", "A1586T", "T1589A", "A1594G", "T1595A", "A1597G", "T1602A", "T1620A", "T1627G", "T1628A", "T1629G", "T1631C", "-1633A", "-1634T", "-1636T", "A1638T", "A1641-", "T1649G", "T1654-", "G1666T", "G1674T", "A1677T", "A1686-", "T1689-", "T1690-", "A1691-", "T1696C", "A1711G", "T1719C", "G1721A", "T1769-", "A1777-", "C1791A", "C1794A", "A1815T", "C1840T"], "N": ["P253L", "E274D", "T289I"], "NSs": ["S35L", "N38S", "Q40R"]}, "labels": {"aa": "N: P253L, E274D, T289I; NSs: S35L, N38S, Q40R"}}, "children": [{"name": "PP_006VLUU|Ol22996|nan/XXXX-XX-XX", "node_attrs": {"div": 0.130147, "strain": {"value": "PP_006VLUU|Ol22996|nan/XXXX-XX-XX"}, "accession": "PP_006VLUU", "author": {"author": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C.", "value": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Calderon et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "1997-12-01"}, "length": {"value": 1919}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "University of Nevada, Microbiology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VLUU.1", "url": "https://pathoplexus.org/seq/PP_006VLUU.1"}, "INSDC_accession": {"value": "AF482715.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF482715.1"}, "host": {"value": "mice and others"}}, "branch_attrs": {"mutations": {"nuc": ["G483A", "A1514G", "G1543T", "G1547C", "T1548A", "T1554A", "T1559G", "A1565G", "T1568A", "T1635G", "-1639G", "T1640-"]}}}, {"name": "PP_006VP38|AND Nort|nan/XXXX-XX-XX", "node_attrs": {"div": 0.135038, "strain": {"value": "PP_006VP38|AND Nort|nan/XXXX-XX-XX"}, "accession": "PP_006VP38", "author": {"author": "Gonzalez Della Valle, M.; Edelstein, A.; Miguel, S.; Martinez, V.; Cortez, J.; Cacace, M. L.; Jurgelenas, G.; Sosa Estani, S.; Padula, P.; Gonzalez Della Valle, M. O.; Miguel, S. D. L.; Martinez, V. P.; Cortes, J.; Cacace, M.; Padula, P. J.", "value": "Gonzalez Della Valle, M.; Edelstein, A.; Miguel, S.; Martinez, V.; Cortez, J.; Cacace, M. L.; Jurgelenas, G.; Sosa Estani, S.; Padula, P.; Gonzalez Della Valle, M. O.; Miguel, S. D. L.; Martinez, V. P.; Cortes, J.; Cacace, M.; Padula, P. J."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Gonzalez Della Valle et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2001-02-19"}, "length": {"value": 1921}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Instituto Nacional de Enfermedades Infecciosas, A.N.L.I.S. Dr. Carlos G. Malbran, Departamento de Virologia"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VP38.1", "url": "https://pathoplexus.org/seq/PP_006VP38.1"}, "INSDC_accession": {"value": "AF325966.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF325966.1"}, "host": {"value": "Chacoan pygmy rice rat"}}, "branch_attrs": {"mutations": {"nuc": ["G312A", "A318G", "T693C", "C760T", "C945T", "C1151A", "C1242T", "A1353T", "G1354A", "C1356A", "T1533C", "A1546T", "T1550A", "T1555A", "T1560A", "A1562G", "G1566A", "T1567G", "T1569A", "-1641G", "T1673C", "C1756A", "C1800T"], "N": ["S370Y"]}, "labels": {"aa": "N: S370Y"}}}]}, {"name": "NODE_0000008", "node_attrs": {"div": 0.0796753, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G66A", "C328T", "A401G", "C459T", "A478C", "A540G", "T552C", "A630C", "T786C", "G855A", "C933T", "C945A", "T948C", "C1042T", "T1044A", "C1308T", "A1357G", "T1538A", "T1570G", "T1697A", "G1715T", "T1761C", "C1816A", "C1818A", "T1834C"], "N": ["K120R"]}, "labels": {"aa": "N: K120R"}}, "children": [{"name": "NODE_0000009", "node_attrs": {"div": 0.102176, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G231A", "G234A", "G339C", "A387G", "C441T", "A450G", "T453C", "C454T", "A456G", "C468T", "T474A", "A492G", "A514C", "G558A", "C678A", "A708C", "C760T", "C774T", "T792A", "T819C", "G840A", "G849A", "C939T", "G1011T", "G1083A", "C1135T", "A1137G", "G1140A", "C1161T", "T1224C", "-1636T", "-1657T", "-1658T"], "NSs": ["G37D"]}, "labels": {"aa": "NSs: G37D"}}, "children": [{"name": "PP_006W2BB|Guachipas 2024|Argentina/2024-XX-XX", "node_attrs": {"div": 0.173432, "strain": {"value": "PP_006W2BB|Guachipas 2024|Argentina/2024-XX-XX"}, "accession": "PP_006W2BB", "author": {"author": "Bellomo, C. M.; Kehl, S.; Alonso, D. O.; Lopez, W.; Cassinelli, F.; Coelho, R. M.; Bravo, G.; Aguirre, S.; Dib, M.; Periolo, N.; Toscano, C.; Gil, J.; Garcia Campos, F.; Ferro, I.; Martinez, V. P.; Kehl, S. D.", "value": "Bellomo, C. M.; Kehl, S.; Alonso, D. O.; Lopez, W.; Cassinelli, F.; Coelho, R. M.; Bravo, G.; Aguirre, S.; Dib, M.; Periolo, N.; Toscano, C.; Gil, J.; Garcia Campos, F.; Ferro, I.; Martinez, V. P.; Kehl, S. D."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2024-XX-XX"}, "abbr_authors": {"value": "Bellomo et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-10"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Guachipas, Salta"}, "length": {"value": 1253}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W2BB.1", "url": "https://pathoplexus.org/seq/PP_006W2BB.1"}, "INSDC_accession": {"value": "PQ181488.2", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PQ181488.2"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["G33A", "C50A", "T117A", "A129G", "G135A", "G156A", "C168T", "C172T", "C244T", "A258G", "C310T", "A318G", "T327G", "T342C", "C357T", "T366C", "T381C", "T408C", "C421T", "A423G", "A438G", "T441A", "C444T", "T465C", "G477A", "C478A", "G483A", "T486A", "C495T", "G504A", "A510G", "G522A", "G543A", "C552A", "C556A", "A621C", "C636T", "A637C", "T690C", "T711C", "C720T", "G729T", "C735T", "A744G", "A753G", "C767G", "C780T", "G789A", "G795A", "T798A", "A807G", "G817T", "A828G", "C843T", "A850C", "T879C", "C891T", "G906A", "A918C", "C922T", "A966C", "T1008C", "T1014C", "G1023T", "G1036T", "A1056G", "G1077A", "T1092A", "C1125T", "G1128A", "C1134T", "A1141C", "A1149G", "T1152C", "C1170T", "A1173G", "C1191T", "A1197C", "A1200G", "G1209A", "A1212G", "G1218A", "C1227T", "T1230C", "T1236A"], "N": ["T3N", "A242G", "A259S", "A332S"], "NSs": ["K3R", "R5Q", "R12K", "A16V", "K46R"]}, "labels": {"aa": "N: T3N, A242G, A259S, A332S; NSs: K3R, R5Q, R12K, A16V, K46R"}}}, {"name": "NODE_0000010", "node_attrs": {"div": 0.126764, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A219G", "G312A", "A321G", "T327C", "A333G", "G378A", "T384A", "G403T", "C417T", "A480G", "C571T", "A582C", "C654T", "A675G", "G714A", "A777T", "T831C", "C838T", "A864G", "A876G", "G885T", "C942T", "A960G", "C984T", "G1020A", "T1029A", "T1038C", "T1188C", "C1206G", "C1242T", "A1305C", "C1360T", "C1398-", "T1425G", "A1468G", "T1512A", "A1539G", "T1569A", "T1577G", "T1592G", "T1595A", "T1602G", "A1632-", "G1659A", "G1674A", "T1696A", "T1714A", "C1768T", "T1769C", "A1777C"], "N": ["A121S"], "NSs": ["E33G"]}, "labels": {"aa": "N: A121S; NSs: E33G"}}, "children": [{"name": "NODE_0000011", "node_attrs": {"div": 0.147708, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G330A", "A426C", "A435C", "G540A", "T564C", "G672T", "G705A", "G729A", "T756C", "T781C", "C786A", "C822T", "T825C", "C837T", "C843T", "A852G", "C1021T", "T1059C", "A1071T", "A1086G", "C1195T", "G1209A", "T1335G", "T1346A", "G1351T", "C1365T", "-1401T", "T1404C", "A1431G", "G1527T", "G1542T", "G1543-", "T1580G", "-1639T", "T1640C", "T1644A", "T1660A", "G1670A", "A1672-", "A1678G", "G1680A", "T1683C", "A1684T", "-1685T", "-1687G", "-1688G", "C1791A", "A1815C"]}}, "children": [{"name": "PP_006VR7Y|Neembucu|Paraguay/XXXX-XX-XX", "node_attrs": {"div": 0.191932, "strain": {"value": "PP_006VR7Y|Neembucu|Paraguay/XXXX-XX-XX"}, "accession": "PP_006VR7Y", "author": {"author": "Chu, Y. K.; Milligan, B.; Owen, R. D.; Goodin, D. G.; Jonsson, C. B.; Chu, Y.-K.", "value": "Chu, Y. K.; Milligan, B.; Owen, R. D.; Goodin, D. G.; Jonsson, C. B.; Chu, Y.-K."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Chu et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2006-01-25"}, "country": {"value": "Paraguay"}, "region": {"value": "South America"}, "length": {"value": 1931}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Southern Research Institute, Viral Biochemistry"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VR7Y.1", "url": "https://pathoplexus.org/seq/PP_006VR7Y.1"}, "INSDC_accession": {"value": "DQ345763.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/DQ345763.1"}, "host": {"value": "Chacoan pygmy rice rat"}}, "branch_attrs": {"mutations": {"nuc": ["T72C", "A90G", "A272G", "T342C", "A384G", "T393C", "T396C", "G411A", "G450A", "G456A", "C472A", "A510G", "A534T", "G579A", "C630T", "G633A", "T634C", "C636T", "C657A", "T672C", "A681G", "A683G", "C687T", "T690C", "T711C", "A750T", "T774C", "A783G", "A786G", "A828G", "A850C", "G876A", "C888T", "T909C", "T927C", "G960A", "T981C", "C996T", "C1032T", "T1071C", "G1077A", "A1113G", "C1119T", "G1137A", "A1149G", "T1152C", "A1182C", "A1197G", "A1200T", "G1206A", "T1236G", "A1272G", "G1296A", "T1318C", "A1331T", "T1334C", "G1335A", "T1338A", "A1342G", "T1350C", "C1378A", "A1379T", "A1440G", "A1481G", "A1526C", "A1531G", "A1532T", "T1533A", "A1538G", "T1545A", "T1549C", "T1550C", "C1578A", "G1580A", "A1582T", "T1588G", "G1592A", "A1608G", "A1611G", "T1629G", "-1634G", "A1645G", "T1646G", "G1648T", "T1651A", "A1652G", "A1653T", "A1669T", "T1671A", "-1672T", "T1673C", "A1705G", "G1734A", "C1756T", "T1768C", "C1769A", "T1787C", "C1797T", "C1802T", "T1805A", "C1815T", "T1867A"], "N": ["K77R", "F198L", "N214S"], "NSs": ["N51D"]}, "labels": {"aa": "N: K77R, F198L, N214S; NSs: N51D"}}}, {"name": "PP_006VQ45|Oc22531|nan/XXXX-XX-XX", "node_attrs": {"div": 0.179288, "strain": {"value": "PP_006VQ45|Oc22531|nan/XXXX-XX-XX"}, "accession": "PP_006VQ45", "author": {"author": "Bohlman, M. C.; Morzunov, S. P.; Meissner, J.; Taylor, M. B.; Ishibashi, K.; Rowe, J.; Levis, S.; Enria, D.; St Jeor, S. C.; St. Jeor, S. C.", "value": "Bohlman, M. C.; Morzunov, S. P.; Meissner, J.; Taylor, M. B.; Ishibashi, K.; Rowe, J.; Levis, S.; Enria, D.; St Jeor, S. C.; St. Jeor, S. C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Bohlman et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2002-02-27"}, "length": {"value": 1933}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "University of Nevada, Reno, Microbiology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VQ45.1", "url": "https://pathoplexus.org/seq/PP_006VQ45.1"}, "INSDC_accession": {"value": "AF482713.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF482713.1"}, "host": {"value": "Chacoan pygmy rice rat"}}, "branch_attrs": {"mutations": {"nuc": ["T117C", "A213G", "C244T", "T441C", "A474C", "G480T", "G492A", "C498T", "C507T", "C519T", "T570C", "A597G", "C630G", "T654C", "C708T", "G732A", "C735T", "C759T", "G846A", "A858G", "A903G", "C922T", "A930G", "T1005C", "T1008C", "C1041T", "A1044G", "C1065T", "A1083T", "G1101A", "G1110A", "A1173G", "C1185T", "C1227T", "T1257C", "T1266C", "T1275C", "A1328G", "C1333T", "A1341T", "T1349A", "T1351C", "A1381-", "T1428C", "T1460A", "C1462T", "G1468A", "C1483T", "A1512C", "G1530A", "G1535T", "G1536T", "G1541C", "T1542C", "T1552G", "T1555-", "T1556-", "G1558A", "G1577T", "C1578T", "G1583C", "A1586G", "G1591A", "A1607C", "T1621C", "-1632A", "A1645-", "-1655C", "T1676C", "G1679T", "T1682C", "A1711G", "C1767T", "A1790C", "C1794A"], "NSs": ["N31S"]}, "labels": {"aa": "NSs: N31S"}}}]}, {"name": "NODE_0000012", "node_attrs": {"div": 0.139895, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C345T", "T408C", "A474G", "C507A", "A588C", "G615A", "G633A", "T717C", "G789A", "A855G", "A858T", "T1042C", "C1050T", "C1104G", "G1218A", "C1397T", "T1567A", "A1582G", "T1628C", "T1629A", "-1634G", "A1641C", "-1655A", "A1659T", "A1674T", "A1686-"]}}, "children": [{"name": "PP_006W29F|URU_1|Uruguay/1996-XX-XX", "node_attrs": {"div": 0.181816, "strain": {"value": "PP_006W29F|URU_1|Uruguay/1996-XX-XX"}, "accession": "PP_006W29F", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "1996-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-23"}, "country": {"value": "Uruguay"}, "region": {"value": "South America"}, "length": {"value": 1934}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W29F.1", "url": "https://pathoplexus.org/seq/PP_006W29F.1"}, "INSDC_accession": {"value": "PP504848.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP504848.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["A28G", "G33T", "A129G", "C225T", "C244T", "G369T", "A378G", "G387A", "T393C", "T417C", "A426G", "T465C", "T468C", "C478T", "C489T", "C495T", "A510G", "T525C", "T528C", "C546T", "T571C", "C582T", "A597G", "G618A", "A642G", "A681G", "A714G", "C720T", "A792T", "A810G", "T858C", "T861C", "T894C", "C897T", "C922T", "T927C", "T984C", "A990G", "C1021T", "A1056G", "A1071T", "G1101A", "C1102T", "G1107A", "C1119T", "G1137A", "A1146G", "G1176A", "C1188T", "G1206A", "T1266A", "A1272G", "T1281C", "C1305T", "T1318C", "A1320G", "A1341G", "C1344G", "A1345C", "A1348T", "T1350G", "A1352T", "A1355G", "A1359G", "C1364T", "-1398C", "T1510G", "A1516G", "G1529A", "G1530T", "A1531T", "T1533G", "A1537T", "G1539A", "G1543T", "A1551G", "T1554A", "T1560C", "G1577A", "T1588G", "T1644A", "A1645G", "-1656A", "T1657G", "T1658G", "T1662A", "A1664C", "G1666-", "T1673C", "T1674C", "T1675C", "A1677T", "T1689-", "T1690-", "A1691-", "A1738G", "C1756T", "C1777A", "A1792T", "T1804A", "A1815T", "A1816C", "A1818C", "C1834T", "C1840T"], "N": ["R146W"], "NSs": ["K3R", "S35L"]}, "labels": {"aa": "N: R146W; NSs: K3R, S35L"}}}, {"name": "NODE_0000013", "node_attrs": {"div": 0.16908, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T202C", "T328C", "G333A", "G369A", "G402A", "A423T", "A447C", "C519T", "G522A", "G579A", "G672C", "G675A", "A678T", "C735T", "T798A", "T834C", "A840G", "G846A", "A850C", "C873T", "T879C", "T939A", "C1038T", "A1062G", "A1098G", "G1110A", "G1158A", "C1170T", "C1191T", "A1212G", "C1221T", "C1227T", "T1275C", "T1284C", "A1311G", "G1339T", "G1357T", "A1379T", "-1401T", "C1462T", "G1541A", "G1542A", "A1551T", "T1552C", "T1572G", "A1586G", "G1591A", "A1593T", "A1595G", "T1630A", "T1649G", "T1650-", "T1651A", "A1652T", "-1656G", "G1680T", "C1761T", "C1763T", "C1794A"]}}, "children": [{"name": "PP_006W100|Lechiguanas|Argentina/2022-XX-XX", "node_attrs": {"div": 0.181783, "strain": {"value": "PP_006W100|Lechiguanas|Argentina/2022-XX-XX"}, "accession": "PP_006W100", "author": {"author": "Bellomo, C. M.; Alonso, D. O.; Martinez, V. P.; Sanchez Loria, J.; Campos, J.", "value": "Bellomo, C. M.; Alonso, D. O.; Martinez, V. P.; Sanchez Loria, J.; Campos, J."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2022-XX-XX"}, "abbr_authors": {"value": "Bellomo et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-07-01"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1938}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "INEI-ANLIS \"Dr C. G. Malbran\", Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W100.1", "url": "https://pathoplexus.org/seq/PP_006W100.1"}, "INSDC_accession": {"value": "OR890439.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR890439.1"}, "host": {"value": "yellow pygmy rice rat"}}, "branch_attrs": {"mutations": {"nuc": ["A71G", "C216T", "A438G", "G618A", "A681G", "G876A", "T909C", "T969C", "T997C", "C1054A", "T1059C", "A1182C", "G1209A", "T1233C", "T1242C", "T1335G", "T1428C", "A1467G", "T1510C", "G1530T", "G1535T", "G1536C", "A1541T", "A1542C", "G1543A", "T1545-", "T1549C", "T1550C", "T1551C", "C1552A", "T1556-", "A1653T", "G1670A", "A1672T", "T1673A", "A1678T", "G1679T", "T1680C", "T1683C", "-1685T", "-1686T", "-1687T", "-1688T", "A1714C"], "N": ["N10S"], "NSs": ["S32L"]}, "labels": {"aa": "N: N10S; NSs: S32L"}}}, {"name": "NODE_0000014", "node_attrs": {"div": 0.181415, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C360T", "T414A", "A426G", "T454C", "A513C", "G567A", "C588T", "C657T", "C660T", "C897T", "T900C", "T1008C", "C1032T", "C1041T", "A1140G", "A1272G", "T1404C", "A1461G", "G1468T", "T1507C", "A1526C", "G1527T", "A1532T", "G1534A", "A1537G", "A1538G", "G1539T", "T1554A", "T1559C", "T1560C", "T1612C", "T1671C", "T1675C", "A1677T", "A1684-"]}}, "children": [{"name": "NODE_0000015", "node_attrs": {"div": 0.182372, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A1056G", "G1062A"]}}, "children": [{"name": "PP_006W1D8|ER19-SP1693|Argentina/2019-XX-XX", "node_attrs": {"div": 0.19338, "strain": {"value": "PP_006W1D8|ER19-SP1693|Argentina/2019-XX-XX"}, "accession": "PP_006W1D8", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2019-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Entre Rios"}, "length": {"value": 1925}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W1D8.1", "url": "https://pathoplexus.org/seq/PP_006W1D8.1"}, "INSDC_accession": {"value": "OR908896.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908896.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["C447T", "T465C", "A627T", "C672T", "G732A", "T942C", "C996T", "T997C", "C1008A", "G1137A", "T1227C", "G1278A", "T1287C", "A1317G", "T1335-", "T1339A", "A1342T", "G1347C", "T1349C", "T1356A", "T1357A", "T1360G", "C1404T", "G1602A", "C1769T"]}}}, {"name": "PP_006VLSY|Of22819|nan/XXXX-XX-XX", "node_attrs": {"div": 0.191029, "strain": {"value": "PP_006VLSY|Of22819|nan/XXXX-XX-XX"}, "accession": "PP_006VLSY", "author": {"author": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C.", "value": "Calderon, G.; Enria, D.; Levis, S.; Morzunov, S. P.; Pini, N.; Rowe, J. E.; Sabattini, M.; St Jeor, S. C.; St. Jeor, S. C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Calderon et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "1997-12-01"}, "length": {"value": 1938}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "University of Nevada, Microbiology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VLSY.1", "url": "https://pathoplexus.org/seq/PP_006VLSY.1"}, "INSDC_accession": {"value": "AF482714.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF482714.1"}, "host": {"value": "yellow pygmy rice rat"}}, "branch_attrs": {"mutations": {"nuc": ["C339T", "C408T", "G456A", "A531T", "C636T", "T760C", "C879A", "C922T", "G954A", "T984C", "A1164G", "T1428C", "G1461T", "T1551C", "C1552A", "A1554G", "T1556-", "A1645G", "A1696G", "T1719C", "T1833C", "C1834T"], "N": ["D279E"]}, "labels": {"aa": "N: D279E"}}}]}, {"name": "NODE_0000016", "node_attrs": {"div": 0.184291, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A240C", "A534T", "C1305T"], "NSs": ["Q40P"]}, "labels": {"aa": "NSs: Q40P"}}, "children": [{"name": "PP_006W1Y3|15631_S|Argentina|1998|Argentina/1998-XX-XX", "node_attrs": {"div": 0.192038, "strain": {"value": "PP_006W1Y3|15631_S|Argentina|1998|Argentina/1998-XX-XX"}, "accession": "PP_006W1Y3", "author": {"author": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J.", "value": "Shedroff, E.; Whitmer, S.; Garcia, J.; Fabbri, C.; Sen, C.; Nazar, Y.; Brignone, J.; Martin, M.; Morales-Betoulle, M.; Montgomery, J.; Morales, A.; Klena, J."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "1998-XX-XX"}, "abbr_authors": {"value": "Shedroff et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-04-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 2122}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Centers for Disease Control and Prevention, Viral Special Pathogens Branch"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W1Y3.1", "url": "https://pathoplexus.org/seq/PP_006W1Y3.1"}, "INSDC_accession": {"value": "PP058740.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP058740.1"}}, "branch_attrs": {"mutations": {"nuc": ["G179A", "C310T", "C472T", "T534C", "C552T", "G795A", "A1017G", "T1050C", "T1191C", "T1281C", "T1356G", "C1392T", "C1559T", "T1803C"], "N": ["S46N", "R144W"], "NSs": ["V20I"]}, "labels": {"aa": "N: S46N, R144W; NSs: V20I"}}}, {"name": "NODE_0000017", "node_attrs": {"div": 0.185136, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T306C"], "NSs": ["I62T"]}, "labels": {"aa": "NSs: I62T"}}, "children": [{"name": "PP_006W1E6|BA18-RR1620|Argentina/2018-XX-XX", "node_attrs": {"div": 0.190613, "strain": {"value": "PP_006W1E6|BA18-RR1620|Argentina/2018-XX-XX"}, "accession": "PP_006W1E6", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2018-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1911}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W1E6.1", "url": "https://pathoplexus.org/seq/PP_006W1E6.1"}, "INSDC_accession": {"value": "OR908897.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908897.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["C216T", "A318G", "C339T", "T363C", "G426A", "T588C", "T1276C", "T1349G", "T1350A", "T1356A", "T1357A", "A1554G", "T1739C", "A1794C"], "NSs": ["S32L"]}, "labels": {"aa": "NSs: S32L"}}}, {"name": "PP_006W1F4|BA18-LD1633|Argentina/2018-XX-XX", "node_attrs": {"div": 0.192184, "strain": {"value": "PP_006W1F4|BA18-LD1633|Argentina/2018-XX-XX"}, "accession": "PP_006W1F4", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2018-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1889}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W1F4.1", "url": "https://pathoplexus.org/seq/PP_006W1F4.1"}, "INSDC_accession": {"value": "OR908898.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908898.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["C453T", "C454T", "C478A", "T537C", "T549C", "T571C", "A753G", "G960A", "A1218G", "C1526A", "T1527G", "G1530T", "T1532A", "A1534G", "G1535T", "G1536T", "G1537A", "G1538A", "T1539G", "A1541C", "A1542C", "G1543A", "T1545-", "A1714C", "C1791A", "C1834T"]}}}]}]}]}]}]}]}]}, {"name": "NODE_0000018", "node_attrs": {"div": 0.14915, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G33A", "A240C", "C310T", "T327A", "A331C", "A333T", "C345G", "T384C", "G411A", "A423T", "A432T", "A435T", "A438C", "A447T", "C471T", "G504A", "C546T", "C555T", "C556A", "T564C", "G567A", "C571T", "G573A", "T612A", "G618A", "C630T", "C678T", "T693C", "C699G", "G729T", "G732A", "C759T", "C780T", "A783G", "G795A", "A807G", "C813T", "T825C", "T831A", "C838T", "A852G", "A858C", "T861C", "A867T", "A870G", "A882T", "C889T", "C891A", "C897T", "G912A", "A915G", "A975G", "A990G", "C996A", "A999G", "T1008C", "T1014C", "A1017T", "G1023A", "T1029A", "C1041T", "A1044G", "G1047A", "A1056G", "G1077A", "C1104T", "A1131T", "A1137C", "G1143A", "A1146G", "T1152A", "G1158A", "C1170T", "A1173G", "T1188C", "A1197C", "T1248C", "G1254A", "T1257G", "A1260G", "A1320G", "T1334C", "T1335A", "A1340T", "T1343C", "C1344A", "A1345G", "G1347A", "T1349C", "A1352G", "A1359T", "C1365T", "T1373A", "-1399T", "C1402-", "T1403-", "A1418G", "A1473-", "A1492G", "T1511C", "A1526C", "G1527-", "G1528-", "G1529-", "G1530-", "A1531-", "A1532-", "G1534T", "A1537G", "A1538G", "A1539T", "T1544A", "G1547A", "T1549G", "T1550G", "A1551G", "T1555A", "G1561C", "T1572A", "A1576G", "A1579C", "A1582G", "T1589A", "T1612A", "-1655T", "T1660-", "G1661-", "A1669C", "G1670A", "T1671A", "A1672T", "G1679T", "A1684T", "-1685T", "-1687G", "-1688G", "T1707C", "A1711T", "T1712A", "A1713C", "T1715C", "C1716T", "C1717-", "T1755C", "C1756T", "A1792T", "T1805A", "T1831A", "T1870C"], "NSs": ["N38S", "Q40P"]}, "labels": {"aa": "NSs: N38S, Q40P"}}, "children": [{"name": "NODE_0000019", "node_attrs": {"div": 0.157468, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A33T", "A90G", "A321G", "C367T", "G378A", "A675G", "T717C", "T768G", "C1161T", "T1236C", "C1324T", "G1354T", "T1356G", "T1423C", "T1630A", "A1632T", "-1633G", "-1634A", "-1639T", "A1645-", "T1651A", "A1652T", "T1654G", "T1655A", "G1659-", "G1674A"]}}, "children": [{"name": "PP_006W1AE|BA10-OE1169|Argentina/2010-XX-XX", "node_attrs": {"div": 0.157469, "strain": {"value": "PP_006W1AE|BA10-OE1169|Argentina/2010-XX-XX"}, "accession": "PP_006W1AE", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2010-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1852}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W1AE.1", "url": "https://pathoplexus.org/seq/PP_006W1AE.1"}, "INSDC_accession": {"value": "OR908893.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908893.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W19G|BA10-GJ1165|Argentina/2010-XX-XX", "node_attrs": {"div": 0.157469, "strain": {"value": "PP_006W19G|BA10-GJ1165|Argentina/2010-XX-XX"}, "accession": "PP_006W19G", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2010-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1838}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W19G.1", "url": "https://pathoplexus.org/seq/PP_006W19G.1"}, "INSDC_accession": {"value": "OR908892.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908892.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["-1745G", "-1746C", "G1751A", "T1754G", "T1756C", "G1757A", "T1759A", "A1760-", "C1761-", "A1762-", "T1764G", "A1766G", "A1778G", "T1784G", "C1795G", "T1798A", "C1799A", "C1801T", "T1808A", "A1815C", "A1820G", "C1822A", "A1831G", "T1833G", "G1835A", "T1841A"]}}}]}, {"name": "NODE_0000020", "node_attrs": {"div": 0.158894, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C244T", "C438T", "C468T", "A510G", "G516A", "C519T", "T528C", "T549C", "A831G", "C1032T", "T1239C", "T1276C", "G1299A", "G1570A", "A1626T", "T1627G", "T1628C", "-1636T", "A1637G", "T1646G", "A1647C", "G1648A", "-1656G", "-1657T", "-1658A", "-1660A", "C1669T"]}}, "children": [{"name": "PP_006W17L|BA16_LJC1557|Argentina/2002-XX-XX", "node_attrs": {"div": 0.16366, "strain": {"value": "PP_006W17L|BA16_LJC1557|Argentina/2002-XX-XX"}, "accession": "PP_006W17L", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1877}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W17L.1", "url": "https://pathoplexus.org/seq/PP_006W17L.1"}, "INSDC_accession": {"value": "OR908890.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908890.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["G345A", "C441T", "G561A", "G990A", "G994A", "C1185A", "C1504T", "C1561T", "T1592C"], "N": ["A318T"]}, "labels": {"aa": "N: A318T"}}}, {"name": "NODE_0000021", "node_attrs": {"div": 0.16004, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A642G"]}}, "children": [{"name": "NODE_0000022", "node_attrs": {"div": 0.164278, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C564T", "A732G", "G831A", "T882C", "T1092C", "T1281C", "G1566A"]}}, "children": [{"name": "NODE_0000023", "node_attrs": {"div": 0.165049, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T1230C"]}}, "children": [{"name": "PP_006W16N|BA02_ROM495|Argentina/2002-XX-XX", "node_attrs": {"div": 0.165825, "strain": {"value": "PP_006W16N|BA02_ROM495|Argentina/2002-XX-XX"}, "accession": "PP_006W16N", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1847}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W16N.1", "url": "https://pathoplexus.org/seq/PP_006W16N.1"}, "INSDC_accession": {"value": "OR908889.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908889.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T447C", "C1834T"]}}}, {"name": "NODE_0000024", "node_attrs": {"div": 0.165052, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W15Q|BA02_AOA490|Argentina/2002-XX-XX", "node_attrs": {"div": 0.165054, "strain": {"value": "PP_006W15Q|BA02_AOA490|Argentina/2002-XX-XX"}, "accession": "PP_006W15Q", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1887}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W15Q.1", "url": "https://pathoplexus.org/seq/PP_006W15Q.1"}, "INSDC_accession": {"value": "OR908888.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908888.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W13U|BA02_RJF487|Argentina/2002-XX-XX", "node_attrs": {"div": 0.165054, "strain": {"value": "PP_006W13U|BA02_RJF487|Argentina/2002-XX-XX"}, "accession": "PP_006W13U", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1794}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W13U.1", "url": "https://pathoplexus.org/seq/PP_006W13U.1"}, "INSDC_accession": {"value": "OR908886.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908886.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000025", "node_attrs": {"div": 0.166618, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G510A", "G1176A", "T1318C", "C1390T"]}}, "children": [{"name": "PP_006W11Y|BA02_VVN481|Argentina/2002-XX-XX", "node_attrs": {"div": 0.168172, "strain": {"value": "PP_006W11Y|BA02_VVN481|Argentina/2002-XX-XX"}, "accession": "PP_006W11Y", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1886}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W11Y.1", "url": "https://pathoplexus.org/seq/PP_006W11Y.1"}, "INSDC_accession": {"value": "OR908884.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908884.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T690C", "C1165T"]}}}, {"name": "NODE_0000026", "node_attrs": {"div": 0.166621, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W14S|BA02_VO483|Argentina/2002-XX-XX", "node_attrs": {"div": 0.166624, "strain": {"value": "PP_006W14S|BA02_VO483|Argentina/2002-XX-XX"}, "accession": "PP_006W14S", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1887}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W14S.1", "url": "https://pathoplexus.org/seq/PP_006W14S.1"}, "INSDC_accession": {"value": "OR908887.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908887.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W12W|BA02_VVD480|Argentina/2002-XX-XX", "node_attrs": {"div": 0.167397, "strain": {"value": "PP_006W12W|BA02_VVD480|Argentina/2002-XX-XX"}, "accession": "PP_006W12W", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1881}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W12W.1", "url": "https://pathoplexus.org/seq/PP_006W12W.1"}, "INSDC_accession": {"value": "OR908885.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908885.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T663C"]}}}]}]}]}, {"name": "NODE_0000027", "node_attrs": {"div": 0.161665, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C489T", "T546C"]}}, "children": [{"name": "NODE_0000028", "node_attrs": {"div": 0.162844, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T117C", "T1092C", "A1570C", "C1628T", "G1637-", "A1638-"]}}, "children": [{"name": "PP_006W18J|BA17_SD1583|Argentina/2002-XX-XX", "node_attrs": {"div": 0.163622, "strain": {"value": "PP_006W18J|BA17_SD1583|Argentina/2002-XX-XX"}, "accession": "PP_006W18J", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1836}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W18J.1", "url": "https://pathoplexus.org/seq/PP_006W18J.1"}, "INSDC_accession": {"value": "OR908891.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908891.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["C1242T", "T1626A", "G1627T", "T1630A", "A1632C", "-1633G", "-1634A", "T1636-", "T1640-", "A1775G", "T1853G", "T1854A"]}}}, {"name": "NODE_0000029", "node_attrs": {"div": 0.167521, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A33T", "A372G", "A387G", "G924A", "A1095G", "T1230C", "G1320A", "G1394A", "G1411A", "T1635-", "-1637C", "-1638G", "-1639A", "C1834T"]}}, "children": [{"name": "PP_006W1CA|BA11-IM1254|Argentina/2011-XX-XX", "node_attrs": {"div": 0.167522, "strain": {"value": "PP_006W1CA|BA11-IM1254|Argentina/2011-XX-XX"}, "accession": "PP_006W1CA", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2011-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1844}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W1CA.1", "url": "https://pathoplexus.org/seq/PP_006W1CA.1"}, "INSDC_accession": {"value": "OR908895.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908895.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W1BC|BA11-MH1249|Argentina/2011-XX-XX", "node_attrs": {"div": 0.167522, "strain": {"value": "PP_006W1BC|BA11-MH1249|Argentina/2011-XX-XX"}, "accession": "PP_006W1BC", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2011-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-06"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1843}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W1BC.1", "url": "https://pathoplexus.org/seq/PP_006W1BC.1"}, "INSDC_accession": {"value": "OR908894.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR908894.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000030", "node_attrs": {"div": 0.165163, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G339A", "A765G", "A921C", "C1206T"]}}, "children": [{"name": "PP_006W0Z2|BA02_SMM484|Argentina/2002-XX-XX", "node_attrs": {"div": 0.165164, "strain": {"value": "PP_006W0Z2|BA02_SMM484|Argentina/2002-XX-XX"}, "accession": "PP_006W0Z2", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-12-31"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1881}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0Z2.1", "url": "https://pathoplexus.org/seq/PP_006W0Z2.1"}, "INSDC_accession": {"value": "OR875982.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR875982.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000031", "node_attrs": {"div": 0.165164, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W28H|BA02_SMM478|Argentina/2002-XX-XX", "node_attrs": {"div": 0.165164, "strain": {"value": "PP_006W28H|BA02_SMM478|Argentina/2002-XX-XX"}, "accession": "PP_006W28H", "author": {"author": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P.", "value": "Alonso, D. O.; Kehl, S. D.; Coelho, R. M.; Periolo, N.; Campos, J.; Poklepovich Caride, T.; Perez-Sautu, U.; Sanchez-Lockhart, M.; Palacios, G.; Bellomo, C. M.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2002-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-23"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "division": {"value": "Buenos Aires"}, "length": {"value": 1848}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W28H.1", "url": "https://pathoplexus.org/seq/PP_006W28H.1"}, "INSDC_accession": {"value": "PP504847.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PP504847.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["A1846C", "T1848G", "G1849T", "T1852C"]}}}, {"name": "PP_006W0UC|Arg-h484|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165164, "strain": {"value": "PP_006W0UC|Arg-h484|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0UC", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-10-10"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1881}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0UC.1", "url": "https://pathoplexus.org/seq/PP_006W0UC.1"}, "INSDC_accession": {"value": "OP555730.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555730.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000032", "node_attrs": {"div": 0.0408272, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A133G", "G156C", "G234A", "A387G", "A420C", "C421T", "G483A", "A510G", "A603T", "T663A", "A669G", "A679C", "G729A", "G846A", "A870G", "C873T", "T894A", "A918T", "C942A", "G954C", "T978C", "G1077A", "C1104A", "G1128A", "T1257A", "A1260G", "A1305C", "C1324T"], "N": ["E38D"], "NSs": ["K3R", "R12T"]}, "labels": {"aa": "N: E38D; NSs: K3R, R12T"}}, "children": [{"name": "NODE_0000033", "node_attrs": {"div": 0.116178, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C50A", "G66A", "A90G", "G135A", "C172T", "A183G", "C184A", "T202C", "G231A", "C244A", "A321G", "A324T", "T363C", "T366C", "T393A", "T405A", "T414C", "A426T", "T435C", "C441A", "C445T", "T453A", "A456G", "C468T", "T474A", "A492G", "C534T", "A540G", "C546A", "G558A", "C579A", "A594C", "T603C", "T636C", "C678A", "A708C", "T717C", "C720T", "A750T", "C767A", "A777T", "T786A", "G795A", "G796T", "T798A", "T819A", "C822T", "T831A", "G840T", "C843T", "A864T", "T867A", "T909A", "A933T", "C939T", "A960T", "C984T", "G1011T", "A1014C", "A1017T", "A1020G", "C1021T", "T1044C", "T1059C", "A1095G", "C1102T", "A1104G", "C1119T", "C1122T", "C1134T", "A1137T", "A1164G", "G1167T", "C1170T", "G1176A", "A1182C", "C1185T", "C1191T", "C1195T", "A1197G", "A1200C", "T1206G", "G1218A", "T1224C", "T1233C", "T1236A", "A1272G", "T1275A", "G1296A", "G1323A", "A1329G"], "N": ["T3N", "L68M", "A242D", "T252S", "E274D", "E297D", "S411A"], "NSs": ["D21G", "G37D"]}, "labels": {"aa": "N: T3N, L68M, A242D, T252S, E274D, E297D, S411A; NSs: D21G, G37D"}}, "children": [{"name": "PP_006VX06|769|Peru/2010-XX-XX", "node_attrs": {"div": 0.16677, "strain": {"value": "PP_006VX06|769|Peru/2010-XX-XX"}, "accession": "PP_006VX06", "author": {"author": "Razuri, H.; Tokarz, R.; Ghersi, B. M.; Salmon-Mulanovich, G.; Guezala, M. C.; Albujar, C.; Mendoza, A. P.; Tinoco, Y. O.; Cruz, C.; Silva, M.; Vasquez, A.; Pacheco, V.; Stroher, U.; Guerrero, L. W.; Cannon, D.; Nichol, S. T.; Hirschberg, D. L.; Lipkin, W. I.; Bausch, D. G.; Montgomery, J. M.", "value": "Razuri, H.; Tokarz, R.; Ghersi, B. M.; Salmon-Mulanovich, G.; Guezala, M. C.; Albujar, C.; Mendoza, A. P.; Tinoco, Y. O.; Cruz, C.; Silva, M.; Vasquez, A.; Pacheco, V.; Stroher, U.; Guerrero, L. W.; Cannon, D.; Nichol, S. T.; Hirschberg, D. L.; Lipkin, W. I.; Bausch, D. G.; Montgomery, J. M."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2010-XX-XX"}, "abbr_authors": {"value": "Razuri et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2014-03-16"}, "country": {"value": "Peru"}, "region": {"value": "South America"}, "length": {"value": 1068}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Columbia University, Center for Infection and Immunity"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VX06.1", "url": "https://pathoplexus.org/seq/PP_006VX06.1"}, "INSDC_accession": {"value": "KF581134.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/KF581134.1"}, "host": {"value": "bristly mouse"}}, "branch_attrs": {"mutations": {"nuc": ["A63G", "T72C", "A111G", "C188G", "A219G", "A222G", "C345T", "C346T", "G348A", "G369A", "G378A", "A401G", "C417T", "T429C", "A447G", "C489G", "C495T", "C507T", "G522A", "T528C", "A543G", "A546G", "G561A", "A564T", "G573A", "A579G", "A588G", "A630C", "T645A", "A648T", "T651C", "C660T", "T711C", "C723T", "C735T", "G747A", "T756C", "G763T", "T781C", "T792G", "A807G", "G828A", "A858G", "A867G", "C879T", "C889T", "G891A", "G912A", "G924A", "T927C", "T933C", "C1014T", "T1017C"], "N": ["A49G", "K120R", "A241S", "D242E"], "NSs": ["Q23E", "E33G", "N34S"]}, "labels": {"aa": "N: A49G, K120R, A241S, D242E; NSs: Q23E, E33G, N34S"}}}, {"name": "NODE_0000034", "node_attrs": {"div": 0.159819, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T61C", "G132A", "G142A", "A240G", "C354T", "A372G", "T384C", "T396C", "G402A", "G403T", "C444T", "C454T", "C498T", "T519C", "A531G", "G567A", "C654T", "T684C", "C687T", "T690C", "T696C", "G732A", "A744G", "A745C", "A768T", "A783G", "G849A", "G855A", "A876G", "G885A", "G906A", "T1026G", "C1032T", "T1038A", "G1047A", "C1050T", "T1089A", "G1101A", "A1113G", "C1125T"], "N": ["V34M", "A121S"], "NSs": ["R4K", "Q40R"]}, "labels": {"aa": "N: V34M, A121S; NSs: R4K, Q40R"}}, "children": [{"name": "PP_006VVXD|FVB799|Bolivia/2009-XX-XX", "node_attrs": {"div": 0.161199, "strain": {"value": "PP_006VVXD|FVB799|Bolivia/2009-XX-XX"}, "accession": "PP_006VVXD", "author": {"author": "Cruz, C. D.; Forshey, B. M.; Vallejo, E.; Agudo, R.; Vargas, J.; Blazes, D. L.; Guevara, C.; Laguna-Torres, V. A.; Halsey, E. S.; Kochel, T. J.; Laguna, V. A.; Guevara, C. L.", "value": "Cruz, C. D.; Forshey, B. M.; Vallejo, E.; Agudo, R.; Vargas, J.; Blazes, D. L.; Guevara, C.; Laguna-Torres, V. A.; Halsey, E. S.; Kochel, T. J.; Laguna, V. A.; Guevara, C. L."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2009-XX-XX"}, "abbr_authors": {"value": "Cruz et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2011-09-21"}, "country": {"value": "Bolivia"}, "region": {"value": "South America"}, "length": {"value": 1287}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "NAMRU-6, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VVXD.1", "url": "https://pathoplexus.org/seq/PP_006VVXD.1"}, "INSDC_accession": {"value": "JF750417.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/JF750417.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["A66G", "G129A"], "NSs": ["R3K"]}, "labels": {"aa": "NSs: R3K"}}}, {"name": "NODE_0000035", "node_attrs": {"div": 0.160782, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A597G"]}}, "children": [{"name": "PP_006VVYB|FVB640|Bolivia/2008-XX-XX", "node_attrs": {"div": 0.162349, "strain": {"value": "PP_006VVYB|FVB640|Bolivia/2008-XX-XX"}, "accession": "PP_006VVYB", "author": {"author": "Cruz, C. D.; Forshey, B. M.; Vallejo, E.; Agudo, R.; Vargas, J.; Blazes, D. L.; Guevara, C.; Laguna-Torres, V. A.; Halsey, E. S.; Kochel, T. J.; Laguna, V. A.; Guevara, C. L.", "value": "Cruz, C. D.; Forshey, B. M.; Vallejo, E.; Agudo, R.; Vargas, J.; Blazes, D. L.; Guevara, C.; Laguna-Torres, V. A.; Halsey, E. S.; Kochel, T. J.; Laguna, V. A.; Guevara, C. L."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2008-XX-XX"}, "abbr_authors": {"value": "Cruz et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2011-09-21"}, "country": {"value": "Bolivia"}, "region": {"value": "South America"}, "length": {"value": 1287}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "NAMRU-6, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VVYB.1", "url": "https://pathoplexus.org/seq/PP_006VVYB.1"}, "INSDC_accession": {"value": "JF750418.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/JF750418.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["C384G", "T693C"]}}}, {"name": "PP_006VVZ9|FVB554|Bolivia/2008-XX-XX", "node_attrs": {"div": 0.161557, "strain": {"value": "PP_006VVZ9|FVB554|Bolivia/2008-XX-XX"}, "accession": "PP_006VVZ9", "author": {"author": "Cruz, C. D.; Forshey, B. M.; Vallejo, E.; Agudo, R.; Vargas, J.; Blazes, D. L.; Guevara, C.; Laguna-Torres, V. A.; Halsey, E. S.; Kochel, T. J.; Laguna, V. A.; Guevara, C. L.", "value": "Cruz, C. D.; Forshey, B. M.; Vallejo, E.; Agudo, R.; Vargas, J.; Blazes, D. L.; Guevara, C.; Laguna-Torres, V. A.; Halsey, E. S.; Kochel, T. J.; Laguna, V. A.; Guevara, C. L."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2008-XX-XX"}, "abbr_authors": {"value": "Cruz et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2011-09-21"}, "country": {"value": "Bolivia"}, "region": {"value": "South America"}, "length": {"value": 1287}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "NAMRU-6, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VVZ9.1", "url": "https://pathoplexus.org/seq/PP_006VVZ9.1"}, "INSDC_accession": {"value": "JF750419.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/JF750419.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["A447G"]}}}]}]}]}, {"name": "NODE_0000036", "node_attrs": {"div": 0.117691, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A28G", "T72C", "C262T", "C354T", "C360A", "C367T", "T384A", "T408A", "G411A", "T414A", "A426G", "A438G", "T453C", "T465G", "C468A", "A486T", "C489G", "A531T", "T555A", "G558T", "G561A", "G567A", "T570C", "G573T", "A609G", "G618A", "A621C", "A624G", "A631C", "A639G", "A648T", "A657T", "G672C", "C687A", "T690A", "C699A", "G705A", "G714A", "A718G", "A744T", "A745C", "T756G", "A762G", "C774T", "T792A", "C797T", "C799G", "A801C", "T804A", "A810C", "G817T", "G829A", "C830T", "T831G", "G855A", "A858C", "A882T", "G883A", "G885T", "C888T", "C889T", "A915T", "C922T", "C939A", "A960G", "A975T", "A979C", "A987T", "A993T", "A1005T", "T1008A", "G1023T", "T1029A", "G1036T", "A1054C", "A1056T", "A1074T", "G1083A", "A1086G", "G1140A", "A1173G", "G1209A", "C1221T", "T1248C", "G1254A", "T1266A", "G1273T", "T1276C", "T1302C", "T1318C", "A1320T", "T1356A", "-1400A", "-1401T", "A1440T", "G1442A", "T1447G", "C1450A", "A1451G", "-1500A", "T1507C", "A1514G", "T1538G", "A1539G", "T1589G", "T1592G", "-1634G", "-1636T", "A1645G", "-1657T", "-1685T", "-1687G", "-1688G", "T1740G", "-1745G", "-1746C", "G1748T", "T1759A", "A1760T", "A1762G", "T1804A"], "N": ["S226G", "E234D", "D238E", "T252V", "P253A", "A259S", "A263M", "V281I", "A332S"]}, "labels": {"aa": "N: S226G, E234D, D238E, T252V, P253A, A259S, A263M, V281I, A332S"}}, "children": [{"name": "NODE_0000037", "node_attrs": {"div": 0.137722, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A63G", "A120G", "G135A", "C225T", "C244T", "C306T", "G312A", "C454T", "T576C", "A597G", "G633A", "C660T", "C735T", "C759T", "T798C", "C837T", "C879T", "T885C", "T909C", "A933G", "A1017G", "C1032T", "G1110A", "G1158A", "T1224C", "A1257C", "T1269A", "T1281C", "A1329G", "T1436C", "G1437A", "A1450G", "C1462T", "T1480C", "A1551G", "A1607T", "T1707C", "A1777G", "T1787C", "A1792T"], "NSs": ["S35L", "T62I"]}, "labels": {"aa": "NSs: S35L, T62I"}}, "children": [{"name": "PP_006W0D9|Chile-9717869|Chile/1997-XX-XX", "node_attrs": {"div": 0.138498, "strain": {"value": "PP_006W0D9|Chile-9717869|Chile/1997-XX-XX"}, "accession": "PP_006W0D9", "author": {"author": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D.", "value": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "1997-XX-XX"}, "abbr_authors": {"value": "Warner et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2021-02-27"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 1871}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Public Health Agency of Canada, Special Pathogens"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0D9.1", "url": "https://pathoplexus.org/seq/PP_006W0D9.1"}, "INSDC_accession": {"value": "MT956622.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MT956622.1"}, "host": {"value": "mice and others"}}, "branch_attrs": {"mutations": {"nuc": ["T1C", "G179A", "A1871T"], "N": ["S46N"], "NSs": ["V20I"]}, "labels": {"aa": "N: S46N; NSs: V20I"}}}, {"name": "NODE_0000038", "node_attrs": {"div": 0.137724, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VQGF|PP_006VQGF|nan/XXXX-XX-XX", "node_attrs": {"div": 0.137725, "strain": {"value": "PP_006VQGF|PP_006VQGF|nan/XXXX-XX-XX"}, "accession": "PP_006VQGF", "author": {"author": "Hall, T. A.; Sampath, R.; Eshoo, M. W.", "value": "Hall, T. A.; Sampath, R.; Eshoo, M. W."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Hall et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2008-09-26"}, "length": {"value": 1871}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VQGF.1", "url": "https://pathoplexus.org/seq/PP_006VQGF.1"}, "INSDC_accession": {"value": "DL138931.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/DL138931.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000039", "node_attrs": {"div": 0.137725, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0E7|Chile-9717869|nan/XXXX-XX-XX", "node_attrs": {"div": 0.137725, "strain": {"value": "PP_006W0E7|Chile-9717869|nan/XXXX-XX-XX"}, "accession": "PP_006W0E7", "author": {"author": "Bohlman, M. C.; Borucki, M.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; St Jeor, S.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B.", "value": "Bohlman, M. C.; Borucki, M.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; St Jeor, S.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Bohlman et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2000-10-10"}, "length": {"value": 1871}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "National Center for Biotechnology Information, NIH"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0E7.1", "url": "https://pathoplexus.org/seq/PP_006W0E7.1"}, "INSDC_accession": {"value": "NC_003466.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/NC_003466.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000040", "node_attrs": {"div": 0.137725, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W1PM|PP_006W1PM|nan/XXXX-XX-XX", "node_attrs": {"div": 0.137725, "strain": {"value": "PP_006W1PM|PP_006W1PM|nan/XXXX-XX-XX"}, "accession": "PP_006W1PM", "author": {"author": "Gimenez, C. A.; Farias, M. E.; Repizo, G. D.; Curti, L. A.; Goytia, F.; Bonnet, F. A. P.", "value": "Gimenez, C. A.; Farias, M. E.; Repizo, G. D.; Curti, L. A.; Goytia, F.; Bonnet, F. A. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Gimenez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2025-02-28"}, "length": {"value": 1871}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W1PM.1", "url": "https://pathoplexus.org/seq/PP_006W1PM.1"}, "INSDC_accession": {"value": "PG081425.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PG081425.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VNZG|Chile-9717869|nan/XXXX-XX-XX", "node_attrs": {"div": 0.137725, "strain": {"value": "PP_006VNZG|Chile-9717869|nan/XXXX-XX-XX"}, "accession": "PP_006VNZG", "author": {"author": "Bohlman, M. C.; Borucki, M. K.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; Rowe, J. E.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B.", "value": "Bohlman, M. C.; Borucki, M. K.; Enria, D.; Ishibashi, K.; Levis, S.; Meissner, J.; Meissner, J. D.; Morzunov, S. P.; Rowe, J.; Rowe, J. E.; St Jeor, S. C.; St. Jeor, S. C.; Taylor, M. B."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Bohlman et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2000-10-10"}, "length": {"value": 1871}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "University of Nevada-Reno, Microbiology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VNZG.1", "url": "https://pathoplexus.org/seq/PP_006VNZG.1"}, "INSDC_accession": {"value": "AF291702.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF291702.1"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000041", "node_attrs": {"div": 0.145199, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G66A", "A219G", "G315A", "A318G", "T357C", "C417T", "C444A", "G450A", "C459T", "G477A", "G504A", "C600T", "C678T", "A753G", "G756A", "A783G", "T825C", "C897T", "G906A", "A972G", "T1038C", "C1041T", "T1074C", "C1125T", "A1131T", "C1161T", "C1185T", "T1188C", "T1275C", "T1284C", "T1287C", "T1343G", "C1344T", "T1423C", "T1443-", "A1526C", "T1549C", "T1572G", "A1573-", "A1576C", "T1582G", "G1589A", "T1596C", "A1641G", "T1646C", "G1648T", "T1681C", "T1682C", "T1696C", "A1721G", "A1734G", "A1776T", "C1794A", "C1830T"], "NSs": ["Q5R", "E33G"]}, "labels": {"aa": "NSs: Q5R, E33G"}}, "children": [{"name": "NODE_0000042", "node_attrs": {"div": 0.153213, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A483G", "A699G", "G849A", "G891A", "A990G", "A1083G", "A1104G", "G1176A", "A1197T", "T1344G", "T1449C", "A1499G", "T1513C", "G1661T", "C1738T"]}}, "children": [{"name": "NODE_0000043", "node_attrs": {"div": 0.160715, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T117C", "A450G", "A630G", "C801T", "T888C", "G972A", "G1086A", "G1173A", "G1278A", "T1320C", "T1533G", "C1612A"]}}, "children": [{"name": "PP_006VZ6S|NRC-5/18_06/01/2018|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.163328, "strain": {"value": "PP_006VZ6S|NRC-5/18_06/01/2018|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ6S", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1857}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZ6S.1", "url": "https://pathoplexus.org/seq/PP_006VZ6S.1"}, "INSDC_accession": {"value": "MN258227.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258227.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["C72T", "T531C", "C1032T", "G1344A", "C1799A"]}}}, {"name": "NODE_0000044", "node_attrs": {"div": 0.16199, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G699A", "A1029G"]}}, "children": [{"name": "PP_006VLDR|AH-1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.161991, "strain": {"value": "PP_006VLDR|AH-1|nan/XXXX-XX-XX"}, "accession": "PP_006VLDR", "author": {"author": "Lopez, N.; Padula, P.; Rossi, C.; Miguel, S.; Edelstein, A.; Ramirez, E.; Franze-Fernandez, M. T.", "value": "Lopez, N.; Padula, P.; Rossi, C.; Miguel, S.; Edelstein, A.; Ramirez, E.; Franze-Fernandez, M. T."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Lopez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "1997-09-03"}, "length": {"value": 1876}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "CONICET, CEVAN"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VLDR.1", "url": "https://pathoplexus.org/seq/PP_006VLDR.1"}, "INSDC_accession": {"value": "AF004660.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF004660.1"}}, "branch_attrs": {"mutations": {"nuc": ["C1862T", "A1863C"]}}}, {"name": "PP_006VP2A|AH-1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.161991, "strain": {"value": "PP_006VP2A|AH-1|nan/XXXX-XX-XX"}, "accession": "PP_006VP2A", "author": {"author": "Padula, P. J.; Sanchez, A. J.; Edelstein, A.; Nichol, S. T.", "value": "Padula, P. J.; Sanchez, A. J.; Edelstein, A.; Nichol, S. T."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Padula et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2001-03-01"}, "length": {"value": 1876}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Instituto Nacional de Enfermedades Infecciosas, A.N.L.I.S. Dr. Carlos G. Malbran, Departamento de Virologia"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VP2A.1", "url": "https://pathoplexus.org/seq/PP_006VP2A.1"}, "INSDC_accession": {"value": "AF324902.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AF324902.1"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000045", "node_attrs": {"div": 0.156117, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T363C", "A543G", "A564G"]}}, "children": [{"name": "PP_006VZ3Y|NRC-2/97_06/01/1996|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.166381, "strain": {"value": "PP_006VZ3Y|NRC-2/97_06/01/1996|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ3Y", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1852}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZ3Y.1", "url": "https://pathoplexus.org/seq/PP_006VZ3Y.1"}, "INSDC_accession": {"value": "MN258224.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258224.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T327C", "G330T", "A492G", "C570T", "G633A", "C672T", "C720A", "C723T", "A855G", "C1032T", "T1041C", "G1158A", "A1257G", "G1347A", "A1432G", "G1435T", "G1464A", "C1513T", "T1548C", "C1549T", "C1576T", "A1590G", "C1737T", "T1743A"]}}}, {"name": "NODE_0000046", "node_attrs": {"div": 0.156923, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T657C"]}}, "children": [{"name": "NODE_0000047", "node_attrs": {"div": 0.165439, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G378A", "A450G", "C495T", "T537C", "T798C", "C813T", "C825T", "C858T", "G1083A", "T1221C", "C1287T", "C1378A", "C1479A", "C1526T", "A1607G", "G1659A", "T1660C", "C1756T"]}}, "children": [{"name": "PP_006VXAL|ANDV LS-CH-2016 ex Chile|Switzerland/2016-12-26", "node_attrs": {"div": 0.170115, "strain": {"value": "PP_006VXAL|ANDV LS-CH-2016 ex Chile|Switzerland/2016-12-26"}, "accession": "PP_006VXAL", "author": {"author": "Beuret, C. M.; Siegrist, D.", "value": "Beuret, C. M.; Siegrist, D."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2016-12-26"}, "abbr_authors": {"value": "Beuret et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2018-01-29"}, "country": {"value": "Switzerland"}, "region": {"value": "Europe"}, "length": {"value": 1874}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Spiez Laboratory, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VXAL.1", "url": "https://pathoplexus.org/seq/PP_006VXAL.1"}, "INSDC_accession": {"value": "KY659432.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/KY659432.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T117C", "C134G", "A140T", "T584C", "G585A", "T781C", "T1798A"], "N": ["A31G", "E33V", "M181T"], "NSs": ["R5G", "R7W"]}, "labels": {"aa": "N: A31G, E33V, M181T; NSs: R5G, R7W"}}}, {"name": "NODE_0000048", "node_attrs": {"div": 0.165441, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0X6|ANDV-CH-LS-2016|Switzerland/2016-XX-XX", "node_attrs": {"div": 0.165442, "strain": {"value": "PP_006W0X6|ANDV-CH-LS-2016|Switzerland/2016-XX-XX"}, "accession": "PP_006W0X6", "author": {"author": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N.", "value": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2016-XX-XX"}, "abbr_authors": {"value": "Zuest et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-10-02"}, "country": {"value": "Switzerland"}, "region": {"value": "Europe"}, "length": {"value": 1793}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Spiez Laboratory, Biology Department"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0X6.1", "url": "https://pathoplexus.org/seq/PP_006W0X6.1"}, "INSDC_accession": {"value": "OR405525.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR405525.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0W8|ANDV-CH-LS-2022|Switzerland/2022-XX-XX", "node_attrs": {"div": 0.165442, "strain": {"value": "PP_006W0W8|ANDV-CH-LS-2022|Switzerland/2022-XX-XX"}, "accession": "PP_006W0W8", "author": {"author": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N.", "value": "Zuest, R.; Aeckermann-Gaeumann, R.; Liechti, N.; Siegrist, D.; Ryter, S.; Portmann, J.; Beuret, C.; Koller, R.; Staehelin, C.; Kuenzli, A.; Marschall, J.; Rothenberger, S.; Engler, O.; Ackermann-Gaeumann, R.; Lenz, N."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2022-XX-XX"}, "abbr_authors": {"value": "Zuest et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-10-02"}, "country": {"value": "Switzerland"}, "region": {"value": "Europe"}, "length": {"value": 1760}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Spiez Laboratory, Biology Department"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0W8.1", "url": "https://pathoplexus.org/seq/PP_006W0W8.1"}, "INSDC_accession": {"value": "OR405520.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OR405520.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["G1493T", "T1496-", "T1497-", "A1498-", "G1499-", "A1500-", "G1501-", "G1502-", "G1503-", "C1504-", "C1505-", "A1506-", "C1507-", "T1508-", "A1509-", "C1510-", "A1511-", "T1512-", "C1513-", "G1514-", "T1515-", "A1516-", "T1517-", "T1518-", "T1519-", "G1520-", "C1521-", "A1522-", "C1523-", "T1524-", "A1525-", "T1526-", "G1527-", "G1528-"]}}}]}]}, {"name": "NODE_0000049", "node_attrs": {"div": 0.158477, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C660T", "T781C"]}}, "children": [{"name": "NODE_0000050", "node_attrs": {"div": 0.168778, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G179A", "G231A", "C328T", "A615G", "C621T", "T711C", "A729G", "C837T", "C843T", "T882C", "G912A", "T1056C", "C1122T", "T1552C", "G1605T", "T1643C"], "N": ["S46N"], "NSs": ["V20I", "G37D"]}, "labels": {"aa": "N: S46N; NSs: V20I, G37D"}}, "children": [{"name": "PP_006VQHC|CHI-7913|Chile/XXXX-XX-XX", "node_attrs": {"div": 0.169553, "strain": {"value": "PP_006VQHC|CHI-7913|Chile/XXXX-XX-XX"}, "accession": "PP_006VQHC", "author": {"author": "Tischler, N. D.; Fernandez, J.; Muller, I.; Martinez, R.; Galeno, H.; Villagra, E.; Mora, J.; Ramirez, E.; Rosemblatt, M.; Valenzuela, P. D.; Mueller, I.; Valenzuela, P. D. T.", "value": "Tischler, N. D.; Fernandez, J.; Muller, I.; Martinez, R.; Galeno, H.; Villagra, E.; Mora, J.; Ramirez, E.; Rosemblatt, M.; Valenzuela, P. D.; Mueller, I.; Valenzuela, P. D. T."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Tischler et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2003-05-01"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 1802}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Fundacion Ciencia para la Vida, Departamento de Desarrollo e Investigacion"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VQHC.1", "url": "https://pathoplexus.org/seq/PP_006VQHC.1"}, "INSDC_accession": {"value": "AY228237.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AY228237.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["G33T", "A484G", "T1776C"], "N": ["T148A"]}, "labels": {"aa": "N: T148A"}}}, {"name": "NODE_0000051", "node_attrs": {"div": 0.16878, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000052", "node_attrs": {"div": 0.168782, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2HY|CHI-7913|Chile/1999-XX-XX", "node_attrs": {"div": 0.168784, "strain": {"value": "PP_006W2HY|CHI-7913|Chile/1999-XX-XX"}, "accession": "PP_006W2HY", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "1999-XX-XX"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2025-11-04"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 1872}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W2HY.1", "url": "https://pathoplexus.org/seq/PP_006W2HY.1"}, "INSDC_accession": {"value": "PV808470.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808470.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["G1487T"]}}}, {"name": "PP_006W0CB|CHI-7913|Chile/1999-XX-XX", "node_attrs": {"div": 0.168784, "strain": {"value": "PP_006W0CB|CHI-7913|Chile/1999-XX-XX"}, "accession": "PP_006W0CB", "author": {"author": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D.", "value": "Warner, B. M.; Sloan, A.; Deschambault, Y.; Dowhanik, S.; Tierney, K.; Audet, J.; Stein, D. R.; Lung, O.; Buchanan, C.; Sroga, P.; Griffin, B. D.; Siragam, V.; Frost, K. L.; Booth, S.; Kobasa, D.; Safronetz, D."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "1999-XX-XX"}, "abbr_authors": {"value": "Warner et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2021-02-27"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 1802}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Public Health Agency of Canada, Special Pathogens"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0CB.1", "url": "https://pathoplexus.org/seq/PP_006W0CB.1"}, "INSDC_accession": {"value": "MT956618.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MT956618.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000053", "node_attrs": {"div": 0.172671, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A63G", "A66G", "A1329G", "G1330T", "T1331A"]}}, "children": [{"name": "PP_006VR28|PP_006VR28|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172672, "strain": {"value": "PP_006VR28|PP_006VR28|nan/XXXX-XX-XX"}, "accession": "PP_006VR28", "author": {"author": "Pichuantesu, S.; Nguyen, S. H.", "value": "Pichuantesu, S.; Nguyen, S. H."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Pichuantesu et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2008-09-26"}, "length": {"value": 1290}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VR28.1", "url": "https://pathoplexus.org/seq/PP_006VR28.1"}, "INSDC_accession": {"value": "DL139703.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/DL139703.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000054", "node_attrs": {"div": 0.172672, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VVWF|PP_006VVWF|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172672, "strain": {"value": "PP_006VVWF|PP_006VVWF|nan/XXXX-XX-XX"}, "accession": "PP_006VVWF", "author": {"author": "Nguyen, S. H.; Pichuantes, S.", "value": "Nguyen, S. H.; Pichuantes, S."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Nguyen et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2013-02-13"}, "length": {"value": 1290}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VVWF.1", "url": "https://pathoplexus.org/seq/PP_006VVWF.1"}, "INSDC_accession": {"value": "HV984420.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/HV984420.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VR0C|PP_006VR0C|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172672, "strain": {"value": "PP_006VR0C|PP_006VR0C|nan/XXXX-XX-XX"}, "accession": "PP_006VR0C", "author": {"author": "Nguyen, S. H.; Pichuantes, S.", "value": "Nguyen, S. H.; Pichuantes, S."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Nguyen et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2008-02-21"}, "length": {"value": 1290}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VR0C.1", "url": "https://pathoplexus.org/seq/PP_006VR0C.1"}, "INSDC_accession": {"value": "DI163829.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/DI163829.1"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000055", "node_attrs": {"div": 0.16453, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T202C", "C363T", "G378A", "G465A", "A477G", "A561G", "T1116C", "C1119T", "A1336G", "T1436C", "G1451A", "C1576T", "G1659A"]}}, "children": [{"name": "NODE_0000056", "node_attrs": {"div": 0.167809, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C357T", "T549C", "G624A", "A1176G", "A1586G"]}}, "children": [{"name": "NODE_0000057", "node_attrs": {"div": 0.171445, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T354G", "T882C", "C1050T", "C1188T", "A1468G", "C1767T"]}}, "children": [{"name": "PP_006VZ5U|NRC-4/18_06/01/2018|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.171446, "strain": {"value": "PP_006VZ5U|NRC-4/18_06/01/2018|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ5U", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1860}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZ5U.1", "url": "https://pathoplexus.org/seq/PP_006VZ5U.1"}, "INSDC_accession": {"value": "MN258226.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258226.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZ4W|NRC-3/18_06/01/1997|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.171446, "strain": {"value": "PP_006VZ4W|NRC-3/18_06/01/1997|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ4W", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1857}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZ4W.1", "url": "https://pathoplexus.org/seq/PP_006VZ4W.1"}, "INSDC_accession": {"value": "MN258225.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258225.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000058", "node_attrs": {"div": 0.177483, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {"nuc": ["T1C", "A2T", "T4C", "T7A", "A8T", "G9A", "A10T", "G312A", "C328T", "A378G", "A627G", "A630G", "T660C", "T927C", "A930G", "A996G", "T1059C", "G1143A", "G1293T", "G1296A", "A1451G", "G1622A", "A1710C"]}, "labels": {"outbreak": "2026-Hondius"}}, "children": [{"name": "PP_006W3U9|PP_006W3U9|Netherlands/2026-05-06", "node_attrs": {"div": 0.177486, "strain": {"value": "PP_006W3U9|PP_006W3U9|Netherlands/2026-05-06"}, "accession": "PP_006W3U9", "author": {"author": "Oude Munnink, B. B.; Nieuwenhuijsse, D.; van der Boom, S.; Zaeck, L.; Boter, M.; Cassidy, H.; Schuele, L.; Molenkamp, R.; van der Eijk, A.; GeurtsvanKessel, C.; Koopmans, M.", "value": "Oude Munnink, B. B.; Nieuwenhuijsse, D.; van der Boom, S.; Zaeck, L.; Boter, M.; Cassidy, H.; Schuele, L.; Molenkamp, R.; van der Eijk, A.; GeurtsvanKessel, C.; Koopmans, M."}, "restrictedUntil": {"value": "2027-05-10"}, "date": {"value": "2026-05-06"}, "abbr_authors": {"value": "Oude Munnink et al."}, "outbreak": {"value": "2026-Hondius"}, "date_released": {"value": "2026-05-10"}, "country": {"value": "Netherlands"}, "region": {"value": "Europe"}, "length": {"value": 1807}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "institution": {"value": "ErasmusMC"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W3U9.1", "url": "https://pathoplexus.org/seq/PP_006W3U9.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000059", "node_attrs": {"div": 0.177486, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000060", "node_attrs": {"div": 0.177488, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {"nuc": ["G28A", "C1850T", "T1851G", "T1852A"]}}, "children": [{"name": "PP_006WDJK|PP_006WDJK|South Africa/2026-05-02", "node_attrs": {"div": 0.17749, "strain": {"value": "PP_006WDJK|PP_006WDJK|South Africa/2026-05-02"}, "accession": "PP_006WDJK", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "restrictedUntil": {"value": "2027-05-12"}, "date": {"value": "2026-05-02"}, "abbr_authors": {"value": "Weyer et al."}, "outbreak": {"value": "2026-Hondius"}, "date_released": {"value": "2026-05-12"}, "country": {"value": "South Africa"}, "region": {"value": "Africa"}, "length": {"value": 1860}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "institution": {"value": "National Institute of Communicable Diseases"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006WDJK.1", "url": "https://pathoplexus.org/seq/PP_006WDJK.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006WANE|PP_006WANE|South Africa/2026-05-02", "node_attrs": {"div": 0.17749, "strain": {"value": "PP_006WANE|PP_006WANE|South Africa/2026-05-02"}, "accession": "PP_006WANE", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "restrictedUntil": {"value": "2027-05-11"}, "date": {"value": "2026-05-02"}, "abbr_authors": {"value": "Weyer et al."}, "outbreak": {"value": "2026-Hondius"}, "date_released": {"value": "2026-05-11"}, "country": {"value": "South Africa"}, "region": {"value": "Africa"}, "length": {"value": 1860}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "institution": {"value": "National Institute of Communicable Diseases"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006WANE.2", "url": "https://pathoplexus.org/seq/PP_006WANE.2"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000061", "node_attrs": {"div": 0.177489, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006WBLH|ANDV/Switzerland/Hu-3337/2026|Switzerland/2026-05-04", "node_attrs": {"div": 0.177491, "strain": {"value": "PP_006WBLH|ANDV/Switzerland/Hu-3337/2026|Switzerland/2026-05-04"}, "accession": "PP_006WBLH", "author": {"author": "Bloemberg, G.; Chudzinski, V.; Cordey, S.; Huber, M.; Laubscher, F.; Perez-Rodriguez, F.-J.; Pichler, I.; Schibler, M.; Thomasson, V.; Ziltener, G.", "value": "Bloemberg, G.; Chudzinski, V.; Cordey, S.; Huber, M.; Laubscher, F.; Perez-Rodriguez, F.-J.; Pichler, I.; Schibler, M.; Thomasson, V.; Ziltener, G."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2026-05-04"}, "abbr_authors": {"value": "Bloemberg et al."}, "outbreak": {"value": "2026-Hondius"}, "date_released": {"value": "2026-05-11"}, "country": {"value": "Switzerland"}, "region": {"value": "Europe"}, "length": {"value": 1853}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "University Hospitals of Geneva, Laboratory of Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006WBLH.1", "url": "https://pathoplexus.org/seq/PP_006WBLH.1"}, "INSDC_accession": {"value": "PZ385163.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PZ385163.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000062", "node_attrs": {"div": 0.177491, "outbreak": {"value": "2026-Hondius"}}, "branch_attrs": {"mutations": {"nuc": ["G22T"]}}, "children": [{"name": "PP_006WDKH|PP_006WDKH|South Africa/2026-04-26", "node_attrs": {"div": 0.177491, "strain": {"value": "PP_006WDKH|PP_006WDKH|South Africa/2026-04-26"}, "accession": "PP_006WDKH", "author": {"author": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A.", "value": "Weyer, J.; Moolla, N.; Grobbelaar, A.; Govender, K.; Featherston, J.; Ismail, A.; Genu, S.; Moodley, M.; Moultrie, A."}, "restrictedUntil": {"value": "2027-05-12"}, "date": {"value": "2026-04-26"}, "abbr_authors": {"value": "Weyer et al."}, "outbreak": {"value": "2026-Hondius"}, "date_released": {"value": "2026-05-12"}, "country": {"value": "South Africa"}, "region": {"value": "Africa"}, "length": {"value": 1811}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "institution": {"value": "National Institute of Communicable Diseases"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006WDKH.1", "url": "https://pathoplexus.org/seq/PP_006WDKH.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T1823A", "A1824T"]}}}, {"name": "PP_006W6RC|PP_006W6RC|Netherlands/2026-05-03", "node_attrs": {"div": 0.177491, "strain": {"value": "PP_006W6RC|PP_006W6RC|Netherlands/2026-05-03"}, "accession": "PP_006W6RC", "author": {"author": "Diagne, Moussa Moise; Sankhe, Safietou; Ndiaye, Ndeye Awa; Kane, Mouhamed; Diop, Seynabou M. B. S.; Seye, Seynabou; Fall, Gamou", "value": "Diagne, Moussa Moise; Sankhe, Safietou; Ndiaye, Ndeye Awa; Kane, Mouhamed; Diop, Seynabou M. B. S.; Seye, Seynabou; Fall, Gamou"}, "restrictedUntil": {"value": "2027-05-11"}, "date": {"value": "2026-05-03"}, "abbr_authors": {"value": "Diagne et al."}, "outbreak": {"value": "2026-Hondius"}, "date_released": {"value": "2026-05-11"}, "country": {"value": "Netherlands"}, "region": {"value": "Europe"}, "length": {"value": 1829}, "dataUseTerms": {"value": "RESTRICTED", "url": "https://pathoplexus.org/about/terms-of-use/restricted-data"}, "institution": {"value": "Institut Pasteur de Dakar"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W6RC.2", "url": "https://pathoplexus.org/seq/PP_006W6RC.2"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}, {"name": "NODE_0000063", "node_attrs": {"div": 0.17081, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T367C", "C453T", "G564A", "G828A", "A930G", "G972A", "G990A", "G1083A", "C1333T", "C1526T", "T1830C"]}}, "children": [{"name": "NODE_0000064", "node_attrs": {"div": 0.173755, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C225T", "T354C", "C858T", "C1116T", "G1344A", "A1500C", "G1666A"], "NSs": ["S35L"]}, "labels": {"aa": "NSs: S35L"}}, "children": [{"name": "PP_006W2KU|CHI-Hu13724_P2|Chile/2024-07-30", "node_attrs": {"div": 0.174531, "strain": {"value": "PP_006W2KU|CHI-Hu13724_P2|Chile/2024-07-30"}, "accession": "PP_006W2KU", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2024-07-30"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2025-11-04"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 1861}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W2KU.1", "url": "https://pathoplexus.org/seq/PP_006W2KU.1"}, "INSDC_accession": {"value": "PV808476.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808476.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["G179A"], "N": ["S46N"], "NSs": ["V20I"]}, "labels": {"aa": "N: S46N; NSs: V20I"}}}, {"name": "NODE_0000065", "node_attrs": {"div": 0.173757, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2JW|CHI-Hu13724_P1|Chile/2024-07-24", "node_attrs": {"div": 0.173758, "strain": {"value": "PP_006W2JW|CHI-Hu13724_P1|Chile/2024-07-24"}, "accession": "PP_006W2JW", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2024-07-24"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2025-11-04"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "length": {"value": 1869}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W2JW.1", "url": "https://pathoplexus.org/seq/PP_006W2JW.1"}, "INSDC_accession": {"value": "PV808473.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808473.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000066", "node_attrs": {"div": 0.173758, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2G1|137|Chile/2024-06-27", "node_attrs": {"div": 0.173758, "strain": {"value": "PP_006W2G1|137|Chile/2024-06-27"}, "accession": "PP_006W2G1", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2024-06-27"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2025-11-04"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "division": {"value": "Los Rios CL"}, "length": {"value": 1865}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W2G1.1", "url": "https://pathoplexus.org/seq/PP_006W2G1.1"}, "INSDC_accession": {"value": "PV808467.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV808467.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W2F3|136|Chile/2024-06-27", "node_attrs": {"div": 0.173758, "strain": {"value": "PP_006W2F3|136|Chile/2024-06-27"}, "accession": "PP_006W2F3", "author": {"author": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N.", "value": "Barrera, A.; Ramos, H.; Fuentes-Luppichini, E.; Martinez-Valdebenito, C.; Pradenas, J.; Rogers, C.; Palma, C.; Campillo, C.; Navarrete, M.; Corre, N. L.; Angulo, J.; Ferres, M.; Le Corre, N."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2024-06-27"}, "abbr_authors": {"value": "Barrera et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2025-11-04"}, "country": {"value": "Chile"}, "region": {"value": "South America"}, "division": {"value": "Los Rios CL"}, "length": {"value": 1870}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Pontificia Universidad Catolica de Chile, Area de biomedicina"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W2F3.1", "url": "https://pathoplexus.org/seq/PP_006W2F3.1"}, "INSDC_accession": {"value": "PV796316.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PV796316.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000067", "node_attrs": {"div": 0.172534, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T417C", "G870A", "T1744C", "A1792G"]}}, "children": [{"name": "PP_006W0SG|Andes/ARG_p19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.17331, "strain": {"value": "PP_006W0SG|Andes/ARG_p19|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0SG", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-10-10"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1873}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0SG.1", "url": "https://pathoplexus.org/seq/PP_006W0SG.1"}, "INSDC_accession": {"value": "OP555722.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555722.1"}}, "branch_attrs": {"mutations": {"nuc": ["G103A", "G1487T"], "N": ["A21T"]}, "labels": {"aa": "N: A21T"}}}, {"name": "NODE_0000068", "node_attrs": {"div": 0.173309, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A57G"]}}, "children": [{"name": "NODE_0000069", "node_attrs": {"div": 0.174084, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G179A"], "N": ["S46N"], "NSs": ["V20I"]}, "labels": {"aa": "N: S46N; NSs: V20I"}}, "children": [{"name": "PP_006W0TE|Andes/ARG-M.a.|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.174085, "strain": {"value": "PP_006W0TE|Andes/ARG-M.a.|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0TE", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-10-10"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1868}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0TE.1", "url": "https://pathoplexus.org/seq/PP_006W0TE.1"}, "INSDC_accession": {"value": "OP555728.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555728.1"}, "host": {"value": "Syrian golden hamster; Syrian golden hamsters; Syrian hamster; golden hamster"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0RJ|Andes/ARG_p9|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.174085, "strain": {"value": "PP_006W0RJ|Andes/ARG_p9|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0RJ", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-10-10"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1872}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0RJ.1", "url": "https://pathoplexus.org/seq/PP_006W0RJ.1"}, "INSDC_accession": {"value": "OP555721.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555721.1"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000070", "node_attrs": {"div": 0.173312, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0NQ|Arg-O.l.444|nan/XXXX-XX-XX", "node_attrs": {"div": 0.173313, "strain": {"value": "PP_006W0NQ|Arg-O.l.444|nan/XXXX-XX-XX"}, "accession": "PP_006W0NQ", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-10-10"}, "length": {"value": 1845}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0NQ.1", "url": "https://pathoplexus.org/seq/PP_006W0NQ.1"}, "INSDC_accession": {"value": "OP555719.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555719.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000071", "node_attrs": {"div": 0.173313, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0MS|PP_006W0MS|nan/XXXX-XX-XX", "node_attrs": {"div": 0.173313, "strain": {"value": "PP_006W0MS|PP_006W0MS|nan/XXXX-XX-XX"}, "accession": "PP_006W0MS", "author": {"author": "Alonso, D.", "value": "Alonso, D."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-09-21"}, "length": {"value": 1845}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0MS.1", "url": "https://pathoplexus.org/seq/PP_006W0MS.1"}, "INSDC_accession": {"value": "OP493851.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP493851.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000072", "node_attrs": {"div": 0.173313, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W0QL|Andes/ARG_p3|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.173313, "strain": {"value": "PP_006W0QL|Andes/ARG_p3|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0QL", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-10-10"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1861}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0QL.1", "url": "https://pathoplexus.org/seq/PP_006W0QL.1"}, "INSDC_accession": {"value": "OP555720.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555720.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W0PN|Andes/ARG-O.l.444|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.173313, "strain": {"value": "PP_006W0PN|Andes/ARG-O.l.444|Argentina/XXXX-XX-XX"}, "accession": "PP_006W0PN", "author": {"author": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V.", "value": "Alonso, D.; Bellomo, C.; Perez-Sautu, U.; Prieto, K.; Kehl, S.; Coelho, R.; Periolo, N.; Sanchez Lockhart, M.; Palacios, G.; Martinez, V."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2023-10-10"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1845}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "Malbran Institute, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0PN.1", "url": "https://pathoplexus.org/seq/PP_006W0PN.1"}, "INSDC_accession": {"value": "OP555723.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OP555723.1"}, "host": {"value": "mice and others"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000073", "node_attrs": {"div": 0.149102, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A261G", "C498T", "T684C", "T693C", "A708G", "G1645A", "A1672G"], "NSs": ["N47S"]}, "labels": {"aa": "NSs: N47S"}}, "children": [{"name": "PP_006W0AF|ARCH14/NRC1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.176462, "strain": {"value": "PP_006W0AF|ARCH14/NRC1|nan/XXXX-XX-XX"}, "accession": "PP_006W0AF", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-03-31"}, "length": {"value": 1860}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0AF.1", "url": "https://pathoplexus.org/seq/PP_006W0AF.1"}, "INSDC_accession": {"value": "MN850086.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850086.1"}}, "branch_attrs": {"mutations": {"nuc": ["C72T", "T354C", "A372G", "G378A", "A401G", "T417C", "G426A", "G438A", "C471T", "T525C", "A540G", "A543G", "A594G", "T678C", "A705G", "C723T", "G771A", "G783A", "T918C", "C945A", "T975C", "C978T", "G1047A", "G1101A", "G1110A", "C1135T", "T1152C", "C1188T", "A1200T", "T1221C", "C1255T", "G1296A", "C1302T", "T1320C", "T1349C", "C1360T", "T1405C", "G1447T", "T1485C", "G1558A", "G1572T", "-1573G", "G1634A", "G1641A", "A1642G", "A1652C", "G1721A"], "N": ["K120R"]}, "labels": {"aa": "N: K120R"}}}, {"name": "NODE_0000074", "node_attrs": {"div": 0.163811, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C172T", "A240G", "T366C", "T474C", "A477G", "A588G", "A597G", "G633T", "T657C", "A729G", "A930G", "C1074T", "A1137G", "G1173A", "T1185C", "A1197C", "T1269A", "T1320A", "G1330A", "G1332A", "A1356G", "C1397T", "T1436C", "T1452A", "A1586T", "A1607G"], "NSs": ["Q40R"]}, "labels": {"aa": "NSs: Q40R"}}, "children": [{"name": "NODE_0000075", "node_attrs": {"div": 0.168504, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T459C", "G516A", "C546T", "G912A", "T918C", "G1326A", "A1336G", "G1395A", "A1499G", "A1530G", "G1672A"]}}, "children": [{"name": "PP_006W07M|AREB14/P1|nan/XXXX-XX-XX", "node_attrs": {"div": 0.168505, "strain": {"value": "PP_006W07M|AREB14/P1|nan/XXXX-XX-XX"}, "accession": "PP_006W07M", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-03-31"}, "length": {"value": 1850}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W07M.1", "url": "https://pathoplexus.org/seq/PP_006W07M.1"}, "INSDC_accession": {"value": "MN850083.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850083.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000076", "node_attrs": {"div": 0.168505, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W09H|AREB14/P3|nan/XXXX-XX-XX", "node_attrs": {"div": 0.168505, "strain": {"value": "PP_006W09H|AREB14/P3|nan/XXXX-XX-XX"}, "accession": "PP_006W09H", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-03-31"}, "length": {"value": 1819}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W09H.1", "url": "https://pathoplexus.org/seq/PP_006W09H.1"}, "INSDC_accession": {"value": "MN850085.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850085.1"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006W08K|AREB14/P2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.168505, "strain": {"value": "PP_006W08K|AREB14/P2|nan/XXXX-XX-XX"}, "accession": "PP_006W08K", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-03-31"}, "length": {"value": 1876}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W08K.1", "url": "https://pathoplexus.org/seq/PP_006W08K.1"}, "INSDC_accession": {"value": "MN850084.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850084.1"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000077", "node_attrs": {"div": 0.164566, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["C507T", "T1449C"]}}, "children": [{"name": "NODE_0000078", "node_attrs": {"div": 0.164569, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ7Q|NRC-6/18_05/21/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.167676, "strain": {"value": "PP_006VZ7Q|NRC-6/18_05/21/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ7Q", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1867}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZ7Q.1", "url": "https://pathoplexus.org/seq/PP_006VZ7Q.1"}, "INSDC_accession": {"value": "MN258228.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258228.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["G330A", "T651C", "A846G", "C1255T", "C1436T", "G1558T", "C1800T"]}}}, {"name": "NODE_0000079", "node_attrs": {"div": 0.166903, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G318A", "G624A", "A1077G"]}}, "children": [{"name": "PP_006W0BD|ARLA17/NRC2|nan/XXXX-XX-XX", "node_attrs": {"div": 0.172368, "strain": {"value": "PP_006W0BD|ARLA17/NRC2|nan/XXXX-XX-XX"}, "accession": "PP_006W0BD", "author": {"author": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P.", "value": "Alonso, D. O.; Perez-Sautu, U.; Bellomo, C. M.; Prieto, K.; Iglesias, A.; Coelho, R.; Periolo, N.; Domenech, I.; Talmon, G.; Hansen, R.; Palacios, G.; Martinez, V. P."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Alonso et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-03-31"}, "length": {"value": 1844}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "INEI - ANLIS Dr C G Malbran, Virologia"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W0BD.1", "url": "https://pathoplexus.org/seq/PP_006W0BD.1"}, "INSDC_accession": {"value": "MN850087.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN850087.1"}}, "branch_attrs": {"mutations": {"nuc": ["C244T", "T336C", "T396C", "T636C", "A846G", "G930A", "A1330C", "A1340G", "A1530G", "G1661-", "T1662-", "T1663-"]}}}, {"name": "PP_006VZ20|Epilink/96_2/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.170019, "strain": {"value": "PP_006VZ20|Epilink/96_2/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ20", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1867}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZ20.1", "url": "https://pathoplexus.org/seq/PP_006VZ20.1"}, "INSDC_accession": {"value": "MN258223.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258223.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T172C", "C420T", "A990G", "C1065T", "G1734A", "C1756T"]}}}]}]}, {"name": "NODE_0000080", "node_attrs": {"div": 0.169233, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T61C", "T363C", "T1005C", "G1143A", "C1197T", "T1281C", "T1350G", "A1793C"]}}, "children": [{"name": "PP_006VZY7|Epuyen/18-19_Patient_7_12/7/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.170008, "strain": {"value": "PP_006VZY7|Epuyen/18-19_Patient_7_12/7/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZY7", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1856}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZY7.1", "url": "https://pathoplexus.org/seq/PP_006VZY7.1"}, "INSDC_accession": {"value": "MN258254.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258254.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T782C"], "N": ["L247S"]}, "labels": {"aa": "N: L247S"}}}, {"name": "NODE_0000081", "node_attrs": {"div": 0.169234, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZF8|Epuyen/18-19_Patient_17_12/31/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169236, "strain": {"value": "PP_006VZF8|Epuyen/18-19_Patient_17_12/31/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZF8", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1861}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZF8.1", "url": "https://pathoplexus.org/seq/PP_006VZF8.1"}, "INSDC_accession": {"value": "MN258236.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258236.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000082", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZQP|Epuyen/18-19_Patient_26_1/4/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZQP|Epuyen/18-19_Patient_26_1/4/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZQP", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1858}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZQP.1", "url": "https://pathoplexus.org/seq/PP_006VZQP.1"}, "INSDC_accession": {"value": "MN258245.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258245.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000083", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZ8N|Epuyen/18-19_Patient_10_12/10/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZ8N|Epuyen/18-19_Patient_10_12/10/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ8N", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1843}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZ8N.1", "url": "https://pathoplexus.org/seq/PP_006VZ8N.1"}, "INSDC_accession": {"value": "MN258229.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258229.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000084", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W2C9|Epuyen|Argentina/2022-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006W2C9|Epuyen|Argentina/2022-XX-XX"}, "accession": "PP_006W2C9", "author": {"author": "Coelho, R.; Kehl, S.; Periolo, N.; Alonso, D.; Bellomo, C.; Martinez, V.", "value": "Coelho, R.; Kehl, S.; Periolo, N.; Alonso, D.; Bellomo, C.; Martinez, V."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "2022-XX-XX"}, "abbr_authors": {"value": "Coelho et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2024-09-25"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1848}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "INEI ANLIS, Virology"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W2C9.1", "url": "https://pathoplexus.org/seq/PP_006W2C9.1"}, "INSDC_accession": {"value": "PQ215668.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/PQ215668.1"}}, "branch_attrs": {"mutations": {"nuc": ["G1520A", "C1869T"]}}}, {"name": "NODE_0000085", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W01Z|Epuyen/18-19_Patient_2_11/23/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006W01Z|Epuyen/18-19_Patient_2_11/23/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006W01Z", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1804}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W01Z.1", "url": "https://pathoplexus.org/seq/PP_006W01Z.1"}, "INSDC_accession": {"value": "MN258249.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258249.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000086", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZZ5", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1858}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZZ5.1", "url": "https://pathoplexus.org/seq/PP_006VZZ5.1"}, "INSDC_accession": {"value": "MN258255.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258255.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000087", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZPR|Epuyen/18-19_Patient_25_1/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZPR|Epuyen/18-19_Patient_25_1/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZPR", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1861}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZPR.1", "url": "https://pathoplexus.org/seq/PP_006VZPR.1"}, "INSDC_accession": {"value": "MN258244.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258244.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000088", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZKZ|Epuyen/18-19_Patient_20_1/1/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZKZ|Epuyen/18-19_Patient_20_1/1/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZKZ", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1862}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZKZ.1", "url": "https://pathoplexus.org/seq/PP_006VZKZ.1"}, "INSDC_accession": {"value": "MN258240.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258240.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000089", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZRM|Epuyen/18-19_Patient_27_1/8/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZRM|Epuyen/18-19_Patient_27_1/8/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZRM", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1848}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZRM.1", "url": "https://pathoplexus.org/seq/PP_006VZRM.1"}, "INSDC_accession": {"value": "MN258246.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258246.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000090", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZSK", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1849}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZSK.1", "url": "https://pathoplexus.org/seq/PP_006VZSK.1"}, "INSDC_accession": {"value": "MN258247.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258247.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000091", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZUF|Epuyen/18-19_Patient_3_11/20/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZUF|Epuyen/18-19_Patient_3_11/20/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZUF", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1851}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZUF.1", "url": "https://pathoplexus.org/seq/PP_006VZUF.1"}, "INSDC_accession": {"value": "MN258250.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258250.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000092", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZJ1|Epuyen/18-19_Patient_1_11/3/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZJ1|Epuyen/18-19_Patient_1_11/3/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZJ1", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1851}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZJ1.1", "url": "https://pathoplexus.org/seq/PP_006VZJ1.1"}, "INSDC_accession": {"value": "MN258239.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258239.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000093", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZTH|Epuyen/18-19_Patient_29_1/14/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZTH|Epuyen/18-19_Patient_29_1/14/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZTH", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1861}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZTH.1", "url": "https://pathoplexus.org/seq/PP_006VZTH.1"}, "INSDC_accession": {"value": "MN258248.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258248.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000094", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZX9|Epuyen/18-19_Patient_6_11/25/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZX9|Epuyen/18-19_Patient_6_11/25/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZX9", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1866}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZX9.1", "url": "https://pathoplexus.org/seq/PP_006VZX9.1"}, "INSDC_accession": {"value": "MN258253.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258253.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000095", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZBG|Epuyen/18-19_Patient_13_12/24/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZBG|Epuyen/18-19_Patient_13_12/24/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZBG", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1851}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZBG.1", "url": "https://pathoplexus.org/seq/PP_006VZBG.1"}, "INSDC_accession": {"value": "MN258232.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258232.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000096", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZLX|Epuyen/18-19_Patient_22_1/1/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZLX|Epuyen/18-19_Patient_22_1/1/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZLX", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1863}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZLX.1", "url": "https://pathoplexus.org/seq/PP_006VZLX.1"}, "INSDC_accession": {"value": "MN258241.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258241.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T1428C"]}}}, {"name": "NODE_0000097", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZEA", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1859}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZEA.1", "url": "https://pathoplexus.org/seq/PP_006VZEA.1"}, "INSDC_accession": {"value": "MN258235.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258235.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000098", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZMV|Epuyen/18-19_Patient_23_1/7/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZMV|Epuyen/18-19_Patient_23_1/7/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZMV", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1850}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZMV.1", "url": "https://pathoplexus.org/seq/PP_006VZMV.1"}, "INSDC_accession": {"value": "MN258242.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258242.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {"nuc": ["T1391C", "T1650C"]}}}, {"name": "NODE_0000099", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZNT", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1849}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZNT.1", "url": "https://pathoplexus.org/seq/PP_006VZNT.1"}, "INSDC_accession": {"value": "MN258243.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258243.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000100", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZVD|Epuyen/18-19_Patient_4_11/27/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZVD|Epuyen/18-19_Patient_4_11/27/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZVD", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1856}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZVD.1", "url": "https://pathoplexus.org/seq/PP_006VZVD.1"}, "INSDC_accession": {"value": "MN258251.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258251.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000101", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZAJ", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1853}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZAJ.1", "url": "https://pathoplexus.org/seq/PP_006VZAJ.1"}, "INSDC_accession": {"value": "MN258231.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258231.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000102", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006W001|Epuyen/18-19_Patient_9_12/12/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006W001|Epuyen/18-19_Patient_9_12/12/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006W001", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1868}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006W001.1", "url": "https://pathoplexus.org/seq/PP_006W001.1"}, "INSDC_accession": {"value": "MN258256.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258256.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000103", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZH3|Epuyen/18-19_Patient_19_1/2/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZH3|Epuyen/18-19_Patient_19_1/2/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZH3", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1865}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZH3.1", "url": "https://pathoplexus.org/seq/PP_006VZH3.1"}, "INSDC_accession": {"value": "MN258238.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258238.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000104", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZWB", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1849}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZWB.1", "url": "https://pathoplexus.org/seq/PP_006VZWB.1"}, "INSDC_accession": {"value": "MN258252.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258252.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000105", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZCE|Epuyen/18-19_Patient_14_12/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZCE|Epuyen/18-19_Patient_14_12/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZCE", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1855}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZCE.1", "url": "https://pathoplexus.org/seq/PP_006VZCE.1"}, "INSDC_accession": {"value": "MN258233.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258233.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000106", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZDC|Epuyen/18-19_Patient_15_12/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZDC|Epuyen/18-19_Patient_15_12/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZDC", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1828}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZDC.1", "url": "https://pathoplexus.org/seq/PP_006VZDC.1"}, "INSDC_accession": {"value": "MN258234.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258234.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000107", "node_attrs": {"div": 0.169235, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZG6|Epuyen/18-19_Patient_18_12/31/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZG6|Epuyen/18-19_Patient_18_12/31/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZG6", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1827}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZG6.1", "url": "https://pathoplexus.org/seq/PP_006VZG6.1"}, "INSDC_accession": {"value": "MN258237.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258237.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ9L", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1844}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZ9L.1", "url": "https://pathoplexus.org/seq/PP_006VZ9L.1"}, "INSDC_accession": {"value": "MN258230.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258230.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, "root_sequence": {"N": "MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQSRRAAVSTLETKLGELKRQLADLVAAQKLATKPVDPTGLEPDDHLKEKSSLRYGNVLDVNSIDLEEPSGQTADWKAIGAYILGFAIPIILKALYMLSTRGRQTVKDNKGTRIRFKDDSSFEEVNGIRKPKHLYVSMPTAQSTMKAEEITPGRFRTIACGLFPAQVKARNIISPVMGVIGFGFFVKDWMDRIEEFLAAECPFLPKPKVASEAFMSTNKMYFLNRQRQVNESKVQDIIDLIDHAETESATLFTEIATPHSVWVFACAPDRCPPTALYVAGVPELGAFFSILQDMRNTIMASKSVGTAEEKLKKKSAFYQSYLRRTQSMGIQLDQKIIILYMLSWGKEAVNHFHLGDDMDPELRQLAQSLIDTKVKEISNQEPLKL*", "NSs": "MPRRQWRWTRMTLTRAHYKVDGQLCLHWRPNSENLRGNLQIWWQLKNWLQNQLIQQGLSLMII*", "nuc": "TAGTAGTAGACTCCTTGAGAAGCTACTGCTGCGAAAGCTGGAATGAGCACCCTCCAAGAATTGCAGGAAAACATCACAGCACACGAACAACAGCTCGTGACTGCTCGGCAAAAGCTTAAGGATGCCGAGAAGGCAGTGGAGGTGGACCCGGATGACGTTAACAAGAGCACACTACAAAGTAGACGGGCAGCTGTGTCTACATTGGAGACCAAACTCGGAGAACTTAAGAGGCAACTTGCAGATTTGGTGGCAGCTCAAAAATTGGCTACAAAACCAGTTGATCCAACAGGGCTTGAGCCTGATGATCATCTAAAGGAAAAATCATCTCTGAGATATGGGAATGTCCTGGATGTTAATTCAATTGATTTGGAAGAACCGAGTGGACAGACTGCTGATTGGAAGGCTATAGGAGCATACATCTTAGGGTTTGCAATTCCGATCATCCTAAAGGCCTTATACATGCTGTCAACCCGTGGGAGACAAACTGTGAAAGACAACAAAGGGACCAGGATAAGGTTTAAGGATGATTCTTCCTTTGAAGAAGTCAATGGGATACGTAAACCAAAACACCTTTACGTCTCAATGCCAACTGCACAGTCCACTATGAAGGCTGAAGAAATCACGCCAGGACGATTTAGGACAATTGCTTGTGGCCTTTTTCCAGCACAGGTCAAAGCCCGAAATATAATAAGTCCTGTAATGGGAGTAATTGGATTTGGCTTCTTTGTAAAGGATTGGATGGATCGGATAGAAGAGTTTCTGGCTGCAGAGTGTCCATTCTTACCTAAGCCAAAGGTCGCCTCAGAAGCCTTCATGTCTACCAATAAGATGTATTTTCTGAACAGACAGAGACAAGTCAATGAATCTAAGGTTCAAGATATTATCGATTTGATAGACCATGCTGAGACCGAGTCTGCTACCTTGTTTACAGAGATTGCAACACCCCATTCAGTCTGGGTGTTTGCATGTGCACCTGACCGGTGCCCTCCAACTGCATTGTATGTTGCAGGGGTACCGGAACTTGGTGCATTTTTTTCTATCCTTCAGGACATGCGTAATACCATCATGGCATCTAAATCTGTAGGGACTGCAGAAGAGAAGCTAAAGAAAAAATCTGCCTTCTACCAATCATACCTAAGAAGGACACAATCTATGGGAATCCAACTGGACCAGAAGATCATAATCCTTTACATGCTATCATGGGGTAAAGAAGCTGTGAATCACTTCCATCTTGGTGATGATATGGACCCTGAACTCAGGCAGCTAGCACAATCTCTGATCGATACTAAGGTGAAGGAGATCTCCAACCAAGAGCCACTTAAGTTGTAGGTGCTTAATGAAATCATGATTGAAGAAAGACTTTCCGGGCTTGTGCCACATATTAATCATCTCAGGACCTATCCTTAATGTGATTAATAGGGTTTTATTATAAGGGCAGTTAATGGGGTTGGTTACTAACTATGGGTAAGGGTTCATTACCATTTTTGCACTAGGGTTAAAGGGCCACTACATTGTATTTGCACTAAGGGAAATGGGAGGTGGGTTAGTTTGTATTTAGTTGTTAAGTTTTTTATAATCATATGTTAATGAGGAATTAGCTATATGATATCACTGATTGATTGGCTATTTTTAGGTTAAGTAATTGTAGTTAAATAGTTGTGTTAAGTTAGTATGTTAAGGTTTATAGGTTAAGATTTACTAACAATCATATTATGTCATTAGATGTAAATTTCATTCCTGGCTTGCTTCTGCTTTCGCATTGCTAACCTACAACAAGACTACCTCACCCACTACCCCTCCCCTATTCTACCTCAACACATACTACCTCACATTTGATTTTTCTTGATTGCTTTTCAAGGAGCATACTACTA"}} \ No newline at end of file