From 766399bae2491959e0730faaddd88f814fca6a50 Mon Sep 17 00:00:00 2001 From: Richard Neher Date: Tue, 12 May 2026 17:36:07 +0200 Subject: [PATCH 1/7] andv: update datasets --- data/nextstrain/orthohantavirus/andv/l/CHANGELOG.md | 7 +++++++ data/nextstrain/orthohantavirus/andv/l/pathogen.json | 1 - data/nextstrain/orthohantavirus/andv/l/tree.json | 2 +- data/nextstrain/orthohantavirus/andv/m/CHANGELOG.md | 6 ++++++ data/nextstrain/orthohantavirus/andv/m/pathogen.json | 1 - data/nextstrain/orthohantavirus/andv/m/tree.json | 2 +- data/nextstrain/orthohantavirus/andv/s/CHANGELOG.md | 7 +++++++ data/nextstrain/orthohantavirus/andv/s/pathogen.json | 1 - data/nextstrain/orthohantavirus/andv/s/tree.json | 2 +- 9 files changed, 23 insertions(+), 6 deletions(-) diff --git a/data/nextstrain/orthohantavirus/andv/l/CHANGELOG.md b/data/nextstrain/orthohantavirus/andv/l/CHANGELOG.md index 247243235..894bac942 100644 --- a/data/nextstrain/orthohantavirus/andv/l/CHANGELOG.md +++ b/data/nextstrain/orthohantavirus/andv/l/CHANGELOG.md @@ -1,3 +1,10 @@ +## Unreleased + +- update outbreak name to 2026-Hondius +- make nucleotide default sequence view. +- add GPC amino acid substitutions + + ## 2026-05-11T18:59:50Z - Updating Nextclade dataset with the latest sequences and metadata from Pathoplexus diff --git a/data/nextstrain/orthohantavirus/andv/l/pathogen.json b/data/nextstrain/orthohantavirus/andv/l/pathogen.json index 15d39a799..217dac6c9 100644 --- a/data/nextstrain/orthohantavirus/andv/l/pathogen.json +++ b/data/nextstrain/orthohantavirus/andv/l/pathogen.json @@ -10,7 +10,6 @@ "changelog": "CHANGELOG.md" }, "schemaVersion": "3.0.0", - "defaultCds": "RdRp", "attributes": { "name": "Andesvirus (segment L)", "reference name": "Chile-9717869", diff --git a/data/nextstrain/orthohantavirus/andv/l/tree.json b/data/nextstrain/orthohantavirus/andv/l/tree.json index be2cabbdc..282720abe 100644 --- a/data/nextstrain/orthohantavirus/andv/l/tree.json +++ b/data/nextstrain/orthohantavirus/andv/l/tree.json @@ -1 +1 @@ -{"version": "v2", "meta": {"title": "Andes Virus L Segment (ANDV)", "updated": "2026-05-11", "build_url": "https://github.com/nextstrain/andv", "data_provenance": [{"name": "Pathoplexus", "url": "https://pathoplexus.org/"}], "maintainers": [{"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}], "display_defaults": {"map_triplicate": false, "color_by": "outbreak", "distance_measure": "div"}, "genome_annotations": {"RdRp": {"end": 6497, "seqid": "defaults/l/reference.gb", "start": 36, "strand": "+", "type": "CDS"}, "nuc": {"end": 6562, "start": 1, "strand": "+", "type": "source"}}, "colorings": [{"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "date", "title": "Collection Date", "type": "categorical"}, {"key": "region", "title": "Region", "type": "categorical", "scale": [["Africa", "#CEB541"], ["Europe", "#E39B39"], ["South America", "#E56C2F"]]}, {"key": "country", "title": "Country", "type": "categorical"}, {"key": "division", "title": "Admin Division", "type": "categorical"}, {"key": "host", "title": "Host", "type": "categorical"}, {"key": "abbr_authors", "title": "Authors", "type": "categorical"}, {"key": "dataUseTerms", "title": "Data use terms", "type": "categorical"}, {"key": "restrictedUntil", "title": "Restricted Until", "type": "categorical"}, {"key": "date_released", "title": "Release Date", "type": "categorical"}, {"key": "length", "title": "Length", "type": "continuous"}, {"key": "INSDC_accession", "title": "INSDC Accession", "type": "categorical"}, {"key": "PPX_accession", "title": "Pathoplexus Accession", "type": "categorical"}, {"key": "institution", "title": "Author Affiliations", "type": "categorical"}, {"key": "totalAmbiguousNucs", "title": "Ambiguous Nucleotides", "type": "continuous"}, {"key": "outbreak", "title": "outbreak", "type": "categorical"}], "filters": ["country", "division", "host", "abbr_authors", "clade_membership"], "geo_resolutions": [{"key": "country", "demes": {"Netherlands": {"latitude": 52.1326, "longitude": 5.2913}, "Paraguay": {"latitude": -23.3165935, "longitude": -58.1693445}, "South Africa": {"latitude": -28.8166235, "longitude": 24.991639}, "Switzerland": {"latitude": 46.8182, "longitude": 8.2275}, "Brazil": {"latitude": -10.3333332, "longitude": -53.1999999}, "Argentina": {"latitude": -37.052315, "longitude": -64.869142}, "Chile": {"latitude": -31.7613364, "longitude": -71.3187696}}}], "panels": ["tree", "entropy"], "extensions": {"nextclade": {"clade_node_attrs": [{"name": "outbreak", "displayName": "Outbreak", "description": "Annotation of recent outbreaks (to be refined)", "skipAsReference": false}]}}}, "tree": {"name": "NODE_0000000", "node_attrs": {"div": 0, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A26G", "G44A", "T47C", "G62A", "T77G", "G89T", "T91C", "C107T", "C131T", "C147T", "C155T", "G158A", "C173T", "T182C", "A188G", "A200C", "C210T", 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H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258188.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258188.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006W001.1", "url": "https://pathoplexus.org/seq/PP_006W001.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6549}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000073", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZNT|Epuyen/18-19_Patient_24_1/3/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZNT", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258176.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258176.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZNT.1", "url": "https://pathoplexus.org/seq/PP_006VZNT.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6532}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000074", "node_attrs": {"div": 0.165356, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZZ5|Epuyen/18-19_Patient_8_12/13/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZZ5", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258187.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258187.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZZ5.1", "url": "https://pathoplexus.org/seq/PP_006VZZ5.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6543}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165356, "strain": {"value": "PP_006VZEA|Epuyen/18-19_Patient_16_12/28/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZEA", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date_released": {"value": "2020-09-30"}, "region": {"value": "South America"}, "abbr_authors": {"value": "Martinez et al."}, "INSDC_accession": {"value": "MN258168.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258168.1"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "PPX_accession": {"value": "PP_006VZEA.1", "url": "https://pathoplexus.org/seq/PP_006VZEA.1"}, "country": {"value": "Argentina"}, "date": {"value": "XXXX-XX-XX"}, "outbreak": {"value": "unassigned"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "totalAmbiguousNucs": {"value": 0}, "length": {"value": 6541}, "host": {"value": "human"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, "root_sequence": {"RdRp": "MEKYREIHQRVRDLAPGTVSALECIDLLDRLYAVRHDLVDQMIKHDWSDNKDVERPIGQVLLMAGIPNDIIQGMEKKIIPNSPSGQVLKSFFRMTPDNYKITGNLIEFIEVTVTADVSRGIREKKIKYEGGLQFVEHLLETESRKGNIPQPYKITFSVVAVKTDGSNISTQWPSRRNDGVVQHMRLVQADINYVREHLIKLDERASLEAMFNLKFHVSGPKLRYFNIPDYRPQQLCEPRIDNLIQYCKNWLTKEHKFVFKEVSGANVIQAFESHEQLHLQKYNESRKPRNFLLLQLTVQGAYLPSTISSDQCNTRIGCLEISKNQPETPVQMLALDISYKYLSLTRDELINYYSPRVHFQSSPNVKEPGTLKLGLSQLNPLSKSILDNVGKHKKDKGLFGEIIDSINVASQIQINACAKIIEQILSNLEINIGEINASMPSPNKTTGVDDLLNKFYDNELGKYMLSILRKTAAWHIGHLVRDITESLIAHAGLRRSKYWSVHAYDHGNVILFILPSKSLEVVGSYIRYFTVFKDGIGLIDADNIDSKAEIDGVTWCYSKVMSIDLNRLLALNIAFEKSLLATATWFQYYTEDQGHFPLQHALRSIFSFHFLLCVSQKMKLCAIFDNLRYLIPSVTSLYSGYELLIEKFFERPFKSSLDVYLYSIIKSLLISLAQNNKVRFYSRVRLLGLTVDHSTVGASGVYPSLMSRVVYKHYRSLISEATTCFFLFEKGLHGNLPEEAKIHLETIEWARKFQEKEKQYGDILLKEGYTIESVINGEVDVEQQLFCQEVSELSAQELNKYLQAKSQVLCANIMNKHWDKPYFSQTRNISLKGMSGALQEDGHLAASVTLIEAIRFLNRSQTNPNVIDMYEQTKQSKAQARIVRKYQRTEADRGFFITTLPTRVRLEIIEDYFDAIAKVVPEEYISYGGDKKVLNIQNALEKALRWASGVSEITTSTGKSIKFKRKLMYVSADATKWSPGDNSAKFRRFTQAIYDGLSDNKLKCCVVDALRNIYETEFFMSRKLHRYIDSMENHSDAVEDFLAFFSNGVSANVKGNWLQGNLNKCSSLFGAAVSLLFREVWKQLFPELECFFEFAHHSDDALFIYGYLEPEDDGTDWFLYVSQQIQAGNFHWHAINQEMWKSMFNLHEHLLLMGSIKVSPKKTTVSPTNAEFLSTFFEGCAVSIPFVKILLGSLSDLPGLGFFDDLAAAQSRCVKSLDLGACPQLAQLAIVLCTSKVERLYGTADGMVNSPTAFLKVNKAHVPVPLGGDGSMSIMELATAGFGMADKNILKNAFISYKHTRRDGDRYVLGLFKFLMSLSEDVFQHDRLGEFSFVGKVQWKVFTPKAEFEFHDQFSHNYLLEWTRQHPVYDYIIPRNRDNLLVYLVRKLNDPSIITAMTMQSPLQLRFRMQAKQHMKVCRYEGEWVTFREVLAAADSFATSYQPTERDMDLFNTLVSCTFSKEYAWKDFLNEVRCEVLTTRHVHRPKIARTFTVREKDQAIQNPINSVIGYKYALTVDEVSDVLDSAFFPESLSADLQVMKDGVYRELGLDISSPEVLKRIAPLLYKAGRSRVVIVEGNVEGTAESICSYWLKTMSLIKTIRVRPKKEVLKAMSLYSVKENIGLQDDIAATRLCIEIWRWCKANEQDVKEWLTSLYFEKQTLMDWVERFRRKGVVPIDPEIQCIGLLLYDVLGYKSVLQMQANRRAYSGKQYDAYCVQTYNEETKLYEGDLRVTFNFGLDCARLEVFWDKKEYILETSITQRHVLRLLMEEVSQELIRCGMRFKTEQVNQTRSLVLFKTEAGFEWGKPNVPCIVYKHCVLRTGLRTKQPINKEFMINVQSDGFRAIAQMDIESPRFLLAHAYHTLRDIRYQAVQAVGNVWFKTEQHKLFINPIISSGLLENFMKGLPAAIPPAAYSLIMNKAKISVDLFMFNELLALINRNNILNLDGIEETSEGYSTVTSMSSKQWSEEMSLMSDDDIDDMEDFTIALDDIDFEQINLEEDIQHFLQDESAYVGDLLIQTEDIEVKKIRGVTRVLEPVKLLKSWVSKGLAIDKVYNPIGIILMARYMSKTYNFSSTPLALLNPYDLTELESVVKGWGETVNDRFKDLDIEAQTVVKEKGVQPEDVLPDSLFSFRHVDVLLRRLFPRDPVSTFY*", "nuc": "TAGTAGTAGACTCCGGGATAGAAAAAGTTAGAAAAATGGAAAAGTATAGAGAGATTCATCAGAGAGTTAGGGACCTTGCACCTGGAACGGTATCAGCATTAGAATGCATAGATCTACTGGATAGGCTCTACGCTGTCAGACATGACCTGGTTGACCAGATGATAAAACATGACTGGTCTGATAATAAAGATGTAGAAAGACCTATAGGTCAAGTTTTACTGATGGCTGGCATACCTAATGATATTATACAAGGCATGGAGAAGAAGATTATACCAAATAGCCCTTCTGGACAAGTATTGAAAAGCTTTTTCCGAATGACACCAGATAATTATAAAATTACAGGTAACTTGATTGAGTTTATTGAAGTGACTGTAACAGCTGATGTGTCACGAGGTATTAGGGAGAAGAAAATAAAGTATGAAGGAGGCCTCCAATTTGTTGAGCACTTACTGGAAACTGAATCAAGGAAGGGTAATATACCGCAACCTTATAAAATAACATTCTCAGTGGTTGCAGTTAAAACAGATGGATCAAACATCTCGACTCAGTGGCCCAGTCGGAGGAACGATGGGGTAGTTCAGCACATGCGTCTAGTCCAAGCTGATATAAATTATGTCAGAGAGCATTTAATAAAGTTAGATGAGAGAGCATCTTTGGAGGCAATGTTTAACTTAAAGTTCCATGTATCAGGCCCTAAACTGAGATACTTTAACATCCCTGATTATAGACCACAGCAGCTATGTGAACCACGGATTGACAACTTAATACAATATTGCAAGAATTGGTTGACAAAAGAACATAAGTTTGTATTCAAAGAAGTCAGTGGAGCTAATGTGATTCAAGCATTTGAGAGTCATGAACAGTTACATTTACAGAAATACAACGAATCACGAAAACCAAGAAATTTTTTACTCTTGCAGCTTACAGTGCAAGGGGCATATCTACCATCAACAATCAGTTCTGACCAGTGCAATACTAGGATTGGGTGTCTAGAAATATCAAAAAACCAACCAGAAACACCAGTACAGATGCTTGCATTGGATATATCTTATAAGTATCTGAGTCTTACAAGGGATGAGTTGATCAATTATTATAGCCCTAGAGTGCACTTTCAATCGAGCCCTAATGTGAAGGAACCAGGGACACTGAAGTTAGGATTATCACAATTAAATCCACTCTCTAAATCAATTCTTGACAATGTTGGAAAGCATAAAAAGGATAAAGGATTATTTGGTGAGATCATAGATAGCATAAATGTGGCAAGTCAAATACAGATCAATGCATGTGCAAAAATAATTGAGCAGATCTTATCAAATCTTGAAATAAACATTGGAGAAATAAATGCTAGTATGCCTTCTCCTAATAAGACAACAGGTGTAGATGACCTGTTAAATAAATTTTATGATAATGAGCTTGGTAAATATATGTTATCCATTCTGAGGAAAACAGCAGCATGGCATATAGGCCATCTAGTCAGAGATATCACAGAAAGTTTAATTGCACATGCTGGGCTGCGCCGTTCTAAATATTGGTCAGTACATGCATATGACCATGGGAATGTAATTTTGTTTATCTTGCCATCAAAGTCACTAGAGGTAGTAGGTTCTTATATAAGGTATTTCACAGTATTTAAAGATGGTATAGGGTTGATAGACGCAGATAATATTGATTCTAAGGCCGAAATTGATGGTGTCACCTGGTGTTATTCTAAGGTCATGAGTATTGATTTAAACAGGTTATTGGCTTTGAACATAGCTTTTGAGAAGTCACTTCTTGCCACGGCTACATGGTTCCAATATTATACTGAAGACCAAGGCCATTTTCCCCTTCAACATGCATTAAGGTCAATCTTTTCTTTCCACTTTTTACTCTGTGTGTCACAAAAGATGAAGCTATGTGCAATATTTGATAACCTTCGTTATCTGATACCATCAGTAACATCTTTGTACTCTGGGTACGAGTTGTTAATAGAAAAATTCTTTGAGAGACCATTTAAGAGTTCACTGGATGTATACCTTTATTCTATCATAAAATCTCTATTAATTAGTTTGGCACAAAATAATAAAGTTCGATTTTACTCAAGAGTTCGTTTGTTAGGATTGACAGTTGATCACTCCACGGTCGGAGCAAGTGGTGTTTACCCCTCTTTAATGTCCCGTGTTGTTTACAAACATTACAGAAGTTTAATCTCTGAAGCTACAACTTGTTTTTTCTTATTTGAAAAGGGTTTGCATGGGAATTTACCAGAAGAGGCTAAAATACATCTTGAAACCATTGAATGGGCTCGGAAGTTCCAGGAGAAAGAAAAACAATATGGTGATATTCTTCTAAAGGAAGGCTATACAATTGAATCTGTAATCAATGGAGAAGTTGATGTAGAACAACAGCTTTTTTGTCAGGAGGTCTCAGAGCTAAGTGCACAAGAGCTCAACAAATATTTACAGGCAAAATCTCAAGTTTTATGTGCTAATATCATGAATAAACACTGGGACAAACCATATTTCAGTCAAACACGCAATATCAGTCTCAAGGGAATGTCTGGGGCATTGCAAGAGGATGGACATTTAGCTGCTAGTGTGACACTGATTGAAGCAATTAGGTTTTTAAATAGATCACAAACCAATCCAAATGTTATTGATATGTATGAGCAGACTAAACAATCAAAGGCACAAGCTAGGATTGTTAGGAAATACCAGAGAACAGAAGCAGATAGAGGATTTTTTATCACAACATTACCAACTAGGGTGCGATTAGAAATAATAGAAGATTATTTCGATGCAATTGCAAAGGTTGTGCCTGAAGAATATATTTCTTATGGTGGGGATAAAAAAGTTCTAAATATTCAGAATGCACTAGAGAAAGCACTTAGATGGGCATCTGGAGTATCAGAAATTACAACAAGCACTGGTAAAAGCATCAAGTTTAAGCGGAAATTAATGTATGTTAGTGCTGATGCCACAAAATGGTCACCAGGAGATAATTCTGCTAAGTTTAGGAGATTTACACAAGCAATATATGATGGCTTATCAGACAACAAACTGAAATGTTGTGTTGTTGATGCATTACGTAACATTTATGAGACTGAATTTTTTATGTCCAGGAAATTACACCGATATATTGATAGTATGGAAAATCATTCAGATGCGGTTGAAGATTTCTTGGCATTTTTCTCAAATGGAGTCTCAGCCAATGTAAAGGGAAACTGGCTTCAAGGGAACTTAAATAAATGCTCATCATTATTTGGTGCTGCTGTCTCATTACTTTTTCGGGAGGTCTGGAAACAATTGTTTCCAGAATTAGAGTGTTTTTTTGAATTTGCACATCATTCAGATGATGCATTGTTCATTTATGGCTATCTGGAGCCTGAAGATGATGGAACAGATTGGTTTTTGTATGTATCACAGCAGATACAGGCAGGAAACTTTCATTGGCATGCTATAAATCAAGAGATGTGGAAGAGCATGTTTAATCTACATGAGCACTTACTATTAATGGGTTCTATTAAAGTGTCACCTAAGAAGACAACAGTATCACCTACTAATGCAGAATTTCTTTCTACTTTTTTTGAAGGTTGTGCTGTGTCAATCCCTTTTGTTAAAATCTTACTGGGTTCATTATCAGATCTTCCTGGGTTAGGTTTCTTTGATGATTTAGCAGCAGCACAAAGCAGATGTGTAAAGTCACTAGATTTGGGTGCTTGCCCACAATTAGCTCAACTAGCTATAGTATTATGCACAAGCAAAGTTGAGAGGTTGTATGGTACTGCTGATGGAATGGTAAACTCTCCAACAGCATTCCTTAAGGTGAATAAAGCACACGTACCAGTACCACTTGGTGGTGATGGCTCAATGTCTATTATGGAGCTTGCAACAGCTGGTTTTGGGATGGCAGATAAGAATATTTTAAAAAATGCATTCATATCTTATAAGCATACTCGTAGAGATGGTGATAGGTACGTATTGGGTTTATTTAAATTTTTGATGTCATTAAGTGAGGATGTATTCCAGCACGACCGATTGGGTGAGTTTAGTTTTGTAGGTAAAGTTCAATGGAAAGTGTTCACTCCTAAAGCTGAATTTGAATTTCATGATCAATTTTCACATAATTATTTATTAGAGTGGACACGTCAACATCCTGTGTATGACTATATTATTCCTAGAAATAGAGATAATTTGCTTGTATACCTTGTAAGAAAGTTGAATGATCCTAGCATCATTACAGCTATGACTATGCAGTCACCATTACAACTTCGTTTCCGTATGCAAGCAAAGCAACATATGAAAGTATGCCGGTATGAAGGTGAATGGGTCACATTCAGGGAGGTACTTGCTGCAGCTGATAGTTTTGCTACGAGTTACCAACCTACTGAAAGGGACATGGATCTCTTTAATACACTTGTAAGTTGTACATTTTCTAAAGAGTATGCTTGGAAAGACTTTTTAAATGAAGTAAGGTGTGAGGTCTTAACAACAAGACATGTACATAGGCCTAAAATTGCTAGGACATTCACTGTTAGAGAAAAGGACCAGGCTATACAAAATCCAATAAATTCGGTGATTGGCTATAAGTATGCTCTTACAGTGGATGAAGTCAGTGATGTTCTTGATAGTGCATTCTTCCCAGAGTCTCTATCTGCAGACTTACAGGTTATGAAAGATGGAGTTTACAGAGAATTAGGACTTGATATAAGTTCTCCTGAAGTCCTAAAACGCATAGCACCACTATTATATAAGGCAGGAAGGTCACGTGTTGTTATTGTGGAAGGAAATGTAGAAGGGACAGCTGAGTCAATCTGTAGTTATTGGCTCAAGACAATGTCACTGATTAAAACAATCAGAGTAAGACCTAAGAAGGAGGTACTGAAAGCTATGTCTTTATATAGTGTTAAAGAAAATATTGGATTGCAGGATGATATTGCAGCAACTCGACTATGCATAGAAATCTGGAGATGGTGTAAGGCAAATGAACAGGATGTTAAAGAATGGCTAACATCTCTGTACTTTGAAAAACAGACATTGATGGATTGGGTAGAAAGGTTTAGAAGGAAAGGAGTTGTTCCTATTGATCCTGAAATACAATGTATTGGCCTACTCTTATATGATGTATTAGGTTATAAAAGTGTGTTACAAATGCAAGCAAACCGAAGAGCCTATTCAGGTAAGCAATATGATGCATACTGTGTGCAAACATATAACGAGGAAACAAAACTATATGAAGGTGACCTTCGTGTTACTTTTAATTTTGGTTTAGATTGTGCAAGGTTAGAAGTTTTTTGGGATAAAAAAGAGTATATCTTAGAGACATCTATCACCCAACGACATGTGTTGCGGTTACTGATGGAAGAAGTGTCACAAGAATTAATTAGATGTGGAATGAGATTCAAAACAGAGCAAGTCAATCAAACTCGGAGCTTAGTGTTATTCAAAACAGAGGCTGGTTTTGAATGGGGTAAGCCTAATGTGCCATGTATTGTATATAAACACTGTGTCTTGAGAACTGGGCTTCGTACGAAACAGCCAATTAATAAAGAGTTCATGATAAATGTACAAAGTGATGGTTTCCGTGCAATAGCACAGATGGATATTGAGAGTCCACGGTTCTTGTTAGCACATGCATATCATACACTGCGTGATATTAGATATCAAGCAGTGCAGGCAGTAGGGAATGTATGGTTTAAAACAGAACAGCACAAACTATTTATTAACCCAATTATATCATCAGGGCTTTTAGAAAACTTTATGAAAGGCTTACCTGCTGCCATACCTCCTGCTGCATATTCCCTCATAATGAACAAGGCTAAGATTTCTGTGGATTTGTTTATGTTCAATGAGCTATTAGCACTTATAAATAGGAATAATATCCTCAACCTTGATGGGATTGAAGAAACATCTGAAGGTTATAGTACTGTGACATCAATGTCTAGCAAGCAGTGGTCTGAAGAGATGAGTTTAATGTCTGATGATGATATTGATGATATGGAGGACTTTACTATAGCACTGGATGATATTGACTTTGAACAAATAAATTTGGAAGAGGATATACAACACTTTCTGCAGGATGAATCAGCATATGTTGGTGATTTATTGATTCAGACAGAAGACATTGAGGTTAAAAAGATACGTGGGGTGACAAGAGTATTAGAGCCAGTCAAGCTATTAAAAAGCTGGGTTTCTAAAGGCCTTGCTATAGACAAAGTATACAATCCTATCGGGATAATCTTAATGGCAAGATACATGTCAAAAACATACAATTTCAGTTCAACACCTCTTGCACTATTAAATCCATATGACTTGACAGAACTTGAAAGTGTTGTAAAGGGATGGGGAGAAACTGTAAATGATCGATTCAAAGATTTAGATATTGAGGCACAAACAGTTGTTAAAGAAAAGGGTGTACAGCCAGAAGATGTACTCCCTGATTCATTATTCTCTTTCAGGCATGTTGATGTTTTGCTGCGAAGGTTGTTCCCGCGTGACCCTGTATCAACATTCTATTAGTGGATTTTATACCTTATTCATACAGTATGTATATTGTAGTGTTCTTTTCCCGGAGCATACTACTA"}} \ No newline at end of file +{"version": "v2", "meta": {"title": "Andes Virus L Segment (ANDV)", "updated": "2026-05-12", "build_url": "https://github.com/nextstrain/andv", "data_provenance": [{"name": "Pathoplexus", "url": "https://pathoplexus.org/"}], "maintainers": [{"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}], "display_defaults": {"map_triplicate": false, "color_by": "outbreak", "distance_measure": "div"}, "genome_annotations": {"RdRp": {"end": 6497, "seqid": "defaults/l/reference.gb", "start": 36, "strand": "+", "type": "CDS"}, "nuc": {"end": 6562, "start": 1, "strand": "+", "type": "source"}}, "colorings": [{"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "date", "title": "Collection Date", "type": "categorical"}, {"key": "region", "title": "Region", "type": "categorical", "scale": [["Africa", "#CEB541"], ["Europe", "#E39B39"], ["South America", "#E56C2F"]]}, {"key": "country", "title": "Country", "type": "categorical"}, {"key": "division", "title": "Admin Division", "type": "categorical"}, {"key": "host", "title": "Host", "type": "categorical"}, {"key": "abbr_authors", "title": "Authors", "type": "categorical"}, {"key": "dataUseTerms", "title": "Data use terms", "type": "categorical"}, {"key": "restrictedUntil", "title": "Restricted Until", "type": "categorical"}, {"key": "date_released", "title": "Release Date", "type": "categorical"}, {"key": "length", "title": "Length", "type": "continuous"}, {"key": "INSDC_accession", "title": "INSDC Accession", "type": "categorical"}, {"key": "PPX_accession", "title": "Pathoplexus Accession", "type": "categorical"}, {"key": "institution", "title": "Author Affiliations", "type": "categorical"}, {"key": "totalAmbiguousNucs", "title": "Ambiguous Nucleotides", "type": "continuous"}, {"key": "outbreak", "title": "outbreak", "type": "categorical"}], "filters": ["country", "division", "host", "abbr_authors", "clade_membership"], "geo_resolutions": [{"key": "country", "demes": {"Brazil": {"latitude": -10.3333332, "longitude": -53.1999999}, "Switzerland": {"latitude": 46.8182, "longitude": 8.2275}, "South Africa": {"latitude": -28.8166235, "longitude": 24.991639}, "Netherlands": {"latitude": 52.1326, "longitude": 5.2913}, "Paraguay": {"latitude": -23.3165935, "longitude": -58.1693445}, "Chile": {"latitude": -31.7613364, "longitude": -71.3187696}, "Argentina": {"latitude": -37.052315, "longitude": -64.869142}}}], "panels": ["tree", "entropy"], "extensions": {"nextclade": {"clade_node_attrs": [{"name": "outbreak", "displayName": "Outbreak", "description": "Annotation of recent outbreaks (to be refined)", "skipAsReference": false}]}}}, "tree": {"name": "NODE_0000000", "node_attrs": {"div": 0, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["T47C", "T77G", "C88G", "C107T", "C146T", "C147T", "C173T", "T182C", "T191C", "G192A", "A200G", "T209C", "T215C", "G221C", "C230T", "T245C", "C254A", "G260A", "A272C", "C281T", "T285A", "T287A", "A290C", "A293G", "G294A", "A296T", "G299A", "C311T", "C312A", "A323T", "A331T", "T332C", "T338A", "T344C", "G350C", "A374C", "T395A", "G401A", "G404A", "A410G", "G424A", "C431T", "C432A", "A434G", "C444A", "A445G", "C446T", "G452T", "C457T", "T462G", "G470A", "G482A", "A485G", "A493G", "C503T", "T512G", "T518C", "C536T", "C539T", "G542A", "G548A", "C554T", "C558A", "G563A", "C566T", "G572T", "T590C", "C591T", "A608T", "C617G", "A632T", "A647G", "T653C", "G656A", "A674G", "G677A", "C680T", "A686C", "T695A", "G701A", "A704G", "C707T", "C713T", "A728G", "G737A", "A746G", "A749T", "C750A", "G751A", "A770G", "A792G", "A797G", "A815G", "G823C", "T824A", "G836T", "A842G", "A845C", "G851A", "T864G", "A866G", "A872G", "C873A", "A878G", "C881T", "C884T", "A896G", "A899T", "C914G", "T915C", "T923A", "G929A", "A938C", "C956T", "C971T", "A972G", "T983A", "G986C", "A995G", "A1004G", "C1007T", "A1013T", "G1023A", "A1025T", "G1028A", "T1034A", "A1046C", "T1047G", "C1059T", "T1064C", "G1072A", "G1079A", "T1080C", "G1082T", "C1085A", "C1097T", "G1102A", "T1116G", "G1118A", "G1133A", "G1142A", "A1157T", "A1160T", "C1178T", "T1190C", "T1193A", "C1196T", "T1227C", "G1238A", "G1257A", "G1259T", "C1277T", "A1289T", "A1293G", "A1295T", "T1319A", "C1328T", "A1334G", "A1337G", "T1339C", "T1358C", "A1370C", "T1376A", "A1379T", "C1385G", "C1386T", "T1389C", "A1391G", "A1397G", "T1415A", "C1433T", "T1436A", "A1445G", "A1454C", "A1472T", "A1478G", "A1490G", "A1496G", "C1517T", "C1550T", "T1565A", "T1571C", "C1574A", "C1590T", "G1595A", "A1598T", "T1610C", "T1619C", "A1625T", "G1646C", "G1649A", "C1655T", "G1656C", "T1661C", "T1670C", "T1691G", "C1694T", "C1696T", "C1697A", "T1709A", "G1712A", "C1715T", "C1733T", "G1736A", "G1748A", "C1751T", "T1757A", "G1763A", "C1778A", "G1781A", "T1784A", "C1793T", "C1811T", "A1814G", "T1823C", "T1829A", "A1832G", "A1847C", "A1848G", "T1865C", "C1871A", "G1875A", "C1917A", "G1925T", "A1934T", "A1937C", "T1944C", "C1949T", "G1955T", "C1958T", "T1962C", "A1970T", "A1976G", "T1994C", "T2018A", "C2027A", "A2033G", "T2036A", "C2037T", "A2039G", "T2045A", "G2051A", "T2069A", "A2072G", "C2078T", "G2083A", "C2088A", "T2090A", "G2093A", "A2099T", "T2100C", "C2114T", "C2117T", "G2120A", "C2123A", "A2126T", "C2141T", "C2144A", "T2147A", "T2148C", "A2150G", "T2159G", "T2165C", "C2168T", "C2177T", "A2180G", "A2186G", "C2189T", "T2192A", "T2198A", "C2213T", "G2225A", "G2237T", "A2249G", "G2252A", "T2255A", "C2265T", "T2267A", "A2270G", "T2285A", "G2288A", "G2291A", "C2294T", "G2300A", "A2308T", "C2310A", "C2328T", "C2360A", "T2372A", "G2373A", "A2384G", "T2390A", "T2393C", "G2399A", "C2405T", "C2412T", "C2429T", "C2432T", "T2459A", "A2462G", "T2480C", "C2486T", "C2504T", "T2525C", "C2528A", "G2543T", "G2544A", "T2547C", "T2548A", "G2555A", "A2582T", "C2583T", "A2591G", "T2597A", "C2621A", "T2624C", "G2648A", "T2654A", "A2660T", "C2662A", "A2663C", "G2678A", "G2687A", "C2693T", "G2696A", "T2733C", "T2741A", "G2747T", "C2748A", "A2753G", "A2756G", "A2762T", "C2774T", "T2783A", "G2795C", "T2810A", "T2813A", "G2822A", "A2831G", "G2832A", "T2834C", "C2835T", "T2843C", "A2861G", "G2883A", "C2903T", "T2906A", "A2913G", "G2914T", "G2921A", "C2957T", "A2975G", "T2984A", "T2987C", "G2990A", "G2996A", "C3023G", "T3024C", "A3026T", "A3038G", "C3039T", "G3041A", "A3062C", "T3063A", "C3066A", "T3068A", "T3074A", "T3083A", "C3098T", "A3131T", "A3132G", "T3134A", "G3146A", "G3150A", "A3152G", "G3161A", "C3170T", "A3174G", "A3179T", "C3182T", "A3185T", "C3188T", "A3190T", "G3197A", "C3207T", "T3209A", "C3218T", "G3252A", "C3254A", "C3261T", "T3263G", "G3272A", "C3275A", "A3281G", "G3302A", "T3305C", "A3320C", "A3329T", "C3344T", "C3353T", "C3357T", "G3359A", "G3362A", "A3377C", "G3392A", "A3401T", "G3404A", "G3407A", "G3413A", "C3422T", "T3424A", "G3449A", "C3461T", "T3483C", "A3488T", "T3515A", "G3521A", "A3527T", "A3530G", "T3536A", "T3539A", "A3548G", "T3554G", "T3560A", "G3581A", "T3590A", "C3602A", "C3606T", "T3623C", "C3624T", "T3626G", 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"MEKYREIHQRVRDLAPGTVSALECIDLLDRLYAVRHDLVDQMIKHDWSDNKDVERPIGQVLLMAGIPNDIIQGMEKKIIPNSPSGQVLKSFFRMTPDNYKITGNLIEFIEVTVTADVSRGIREKKIKYEGGLQFVEHLLETESRKGNIPQPYKITFSVVAVKTDGSNISTQWPSRRNDGVVQHMRLVQADINYVREHLIKLDERASLEAMFNLKFHVSGPKLRYFNIPDYRPQQLCEPRIDNLIQYCKNWLTKEHKFVFKEVSGANVIQAFESHEQLHLQKYNESRKPRNFLLLQLTVQGAYLPSTISSDQCNTRIGCLEISKNQPETPVQMLALDISYKYLSLTRDELINYYSPRVHFQSSPNVKEPGTLKLGLSQLNPLSKSILDNVGKHKKDKGLFGEIIDSINVASQIQINACAKIIEQILSNLEINIGEINASMPSPNKTTGVDDLLNKFYDNELGKYMLSILRKTAAWHIGHLVRDITESLIAHAGLRRSKYWSVHAYDHGNVILFILPSKSLEVVGSYIRYFTVFKDGIGLIDADNIDSKAEIDGVTWCYSKVMSIDLNRLLALNIAFEKSLLATATWFQYYTEDQGHFPLQHALRSIFSFHFLLCVSQKMKLCAIFDNLRYLIPSVTSLYSGYELLIEKFFERPFKSSLDVYLYSIIKSLLISLAQNNKVRFYSRVRLLGLTVDHSTVGASGVYPSLMSRVVYKHYRSLISEATTCFFLFEKGLHGNLPEEAKIHLETIEWARKFQEKEKQYGDILLKEGYTIESVINGEVDVEQQLFCQEVSELSAQELNKYLQAKSQVLCANIMNKHWDKPYFSQTRNISLKGMSGALQEDGHLAASVTLIEAIRFLNRSQTNPNVIDMYEQTKQSKAQARIVRKYQRTEADRGFFITTLPTRVRLEIIEDYFDAIAKVVPEEYISYGGDKKVLNIQNALEKALRWASGVSEITTSTGKSIKFKRKLMYVSADATKWSPGDNSAKFRRFTQAIYDGLSDNKLKCCVVDALRNIYETEFFMSRKLHRYIDSMENHSDAVEDFLAFFSNGVSANVKGNWLQGNLNKCSSLFGAAVSLLFREVWKQLFPELECFFEFAHHSDDALFIYGYLEPEDDGTDWFLYVSQQIQAGNFHWHAINQEMWKSMFNLHEHLLLMGSIKVSPKKTTVSPTNAEFLSTFFEGCAVSIPFVKILLGSLSDLPGLGFFDDLAAAQSRCVKSLDLGACPQLAQLAIVLCTSKVERLYGTADGMVNSPTAFLKVNKAHVPVPLGGDGSMSIMELATAGFGMADKNILKNAFISYKHTRRDGDRYVLGLFKFLMSLSEDVFQHDRLGEFSFVGKVQWKVFTPKAEFEFHDQFSHNYLLEWTRQHPVYDYIIPRNRDNLLVYLVRKLNDPSIITAMTMQSPLQLRFRMQAKQHMKVCRYEGEWVTFREVLAAADSFATSYQPTERDMDLFNTLVSCTFSKEYAWKDFLNEVRCEVLTTRHVHRPKIARTFTVREKDQAIQNPINSVIGYKYALTVDEVSDVLDSAFFPESLSADLQVMKDGVYRELGLDISSPEVLKRIAPLLYKAGRSRVVIVEGNVEGTAESICSYWLKTMSLIKTIRVRPKKEVLKAMSLYSVKENIGLQDDIAATRLCIEIWRWCKANEQDVKEWLTSLYFEKQTLMDWVERFRRKGVVPIDPEIQCIGLLLYDVLGYKSVLQMQANRRAYSGKQYDAYCVQTYNEETKLYEGDLRVTFNFGLDCARLEVFWDKKEYILETSITQRHVLRLLMEEVSQELIRCGMRFKTEQVNQTRSLVLFKTEAGFEWGKPNVPCIVYKHCVLRTGLRTKQPINKEFMINVQSDGFRAIAQMDIESPRFLLAHAYHTLRDIRYQAVQAVGNVWFKTEQHKLFINPIISSGLLENFMKGLPAAIPPAAYSLIMNKAKISVDLFMFNELLALINRNNILNLDGIEETSEGYSTVTSMSSKQWSEEMSLMSDDDIDDMEDFTIALDDIDFEQINLEEDIQHFLQDESAYVGDLLIQTEDIEVKKIRGVTRVLEPVKLLKSWVSKGLAIDKVYNPIGIILMARYMSKTYNFSSTPLALLNPYDLTELESVVKGWGETVNDRFKDLDIEAQTVVKEKGVQPEDVLPDSLFSFRHVDVLLRRLFPRDPVSTFY*", "nuc": "TAGTAGTAGACTCCGGGATAGAAAAAGTTAGAAAAATGGAAAAGTATAGAGAGATTCATCAGAGAGTTAGGGACCTTGCACCTGGAACGGTATCAGCATTAGAATGCATAGATCTACTGGATAGGCTCTACGCTGTCAGACATGACCTGGTTGACCAGATGATAAAACATGACTGGTCTGATAATAAAGATGTAGAAAGACCTATAGGTCAAGTTTTACTGATGGCTGGCATACCTAATGATATTATACAAGGCATGGAGAAGAAGATTATACCAAATAGCCCTTCTGGACAAGTATTGAAAAGCTTTTTCCGAATGACACCAGATAATTATAAAATTACAGGTAACTTGATTGAGTTTATTGAAGTGACTGTAACAGCTGATGTGTCACGAGGTATTAGGGAGAAGAAAATAAAGTATGAAGGAGGCCTCCAATTTGTTGAGCACTTACTGGAAACTGAATCAAGGAAGGGTAATATACCGCAACCTTATAAAATAACATTCTCAGTGGTTGCAGTTAAAACAGATGGATCAAACATCTCGACTCAGTGGCCCAGTCGGAGGAACGATGGGGTAGTTCAGCACATGCGTCTAGTCCAAGCTGATATAAATTATGTCAGAGAGCATTTAATAAAGTTAGATGAGAGAGCATCTTTGGAGGCAATGTTTAACTTAAAGTTCCATGTATCAGGCCCTAAACTGAGATACTTTAACATCCCTGATTATAGACCACAGCAGCTATGTGAACCACGGATTGACAACTTAATACAATATTGCAAGAATTGGTTGACAAAAGAACATAAGTTTGTATTCAAAGAAGTCAGTGGAGCTAATGTGATTCAAGCATTTGAGAGTCATGAACAGTTACATTTACAGAAATACAACGAATCACGAAAACCAAGAAATTTTTTACTCTTGCAGCTTACAGTGCAAGGGGCATATCTACCATCAACAATCAGTTCTGACCAGTGCAATACTAGGATTGGGTGTCTAGAAATATCAAAAAACCAACCAGAAACACCAGTACAGATGCTTGCATTGGATATATCTTATAAGTATCTGAGTCTTACAAGGGATGAGTTGATCAATTATTATAGCCCTAGAGTGCACTTTCAATCGAGCCCTAATGTGAAGGAACCAGGGACACTGAAGTTAGGATTATCACAATTAAATCCACTCTCTAAATCAATTCTTGACAATGTTGGAAAGCATAAAAAGGATAAAGGATTATTTGGTGAGATCATAGATAGCATAAATGTGGCAAGTCAAATACAGATCAATGCATGTGCAAAAATAATTGAGCAGATCTTATCAAATCTTGAAATAAACATTGGAGAAATAAATGCTAGTATGCCTTCTCCTAATAAGACAACAGGTGTAGATGACCTGTTAAATAAATTTTATGATAATGAGCTTGGTAAATATATGTTATCCATTCTGAGGAAAACAGCAGCATGGCATATAGGCCATCTAGTCAGAGATATCACAGAAAGTTTAATTGCACATGCTGGGCTGCGCCGTTCTAAATATTGGTCAGTACATGCATATGACCATGGGAATGTAATTTTGTTTATCTTGCCATCAAAGTCACTAGAGGTAGTAGGTTCTTATATAAGGTATTTCACAGTATTTAAAGATGGTATAGGGTTGATAGACGCAGATAATATTGATTCTAAGGCCGAAATTGATGGTGTCACCTGGTGTTATTCTAAGGTCATGAGTATTGATTTAAACAGGTTATTGGCTTTGAACATAGCTTTTGAGAAGTCACTTCTTGCCACGGCTACATGGTTCCAATATTATACTGAAGACCAAGGCCATTTTCCCCTTCAACATGCATTAAGGTCAATCTTTTCTTTCCACTTTTTACTCTGTGTGTCACAAAAGATGAAGCTATGTGCAATATTTGATAACCTTCGTTATCTGATACCATCAGTAACATCTTTGTACTCTGGGTACGAGTTGTTAATAGAAAAATTCTTTGAGAGACCATTTAAGAGTTCACTGGATGTATACCTTTATTCTATCATAAAATCTCTATTAATTAGTTTGGCACAAAATAATAAAGTTCGATTTTACTCAAGAGTTCGTTTGTTAGGATTGACAGTTGATCACTCCACGGTCGGAGCAAGTGGTGTTTACCCCTCTTTAATGTCCCGTGTTGTTTACAAACATTACAGAAGTTTAATCTCTGAAGCTACAACTTGTTTTTTCTTATTTGAAAAGGGTTTGCATGGGAATTTACCAGAAGAGGCTAAAATACATCTTGAAACCATTGAATGGGCTCGGAAGTTCCAGGAGAAAGAAAAACAATATGGTGATATTCTTCTAAAGGAAGGCTATACAATTGAATCTGTAATCAATGGAGAAGTTGATGTAGAACAACAGCTTTTTTGTCAGGAGGTCTCAGAGCTAAGTGCACAAGAGCTCAACAAATATTTACAGGCAAAATCTCAAGTTTTATGTGCTAATATCATGAATAAACACTGGGACAAACCATATTTCAGTCAAACACGCAATATCAGTCTCAAGGGAATGTCTGGGGCATTGCAAGAGGATGGACATTTAGCTGCTAGTGTGACACTGATTGAAGCAATTAGGTTTTTAAATAGATCACAAACCAATCCAAATGTTATTGATATGTATGAGCAGACTAAACAATCAAAGGCACAAGCTAGGATTGTTAGGAAATACCAGAGAACAGAAGCAGATAGAGGATTTTTTATCACAACATTACCAACTAGGGTGCGATTAGAAATAATAGAAGATTATTTCGATGCAATTGCAAAGGTTGTGCCTGAAGAATATATTTCTTATGGTGGGGATAAAAAAGTTCTAAATATTCAGAATGCACTAGAGAAAGCACTTAGATGGGCATCTGGAGTATCAGAAATTACAACAAGCACTGGTAAAAGCATCAAGTTTAAGCGGAAATTAATGTATGTTAGTGCTGATGCCACAAAATGGTCACCAGGAGATAATTCTGCTAAGTTTAGGAGATTTACACAAGCAATATATGATGGCTTATCAGACAACAAACTGAAATGTTGTGTTGTTGATGCATTACGTAACATTTATGAGACTGAATTTTTTATGTCCAGGAAATTACACCGATATATTGATAGTATGGAAAATCATTCAGATGCGGTTGAAGATTTCTTGGCATTTTTCTCAAATGGAGTCTCAGCCAATGTAAAGGGAAACTGGCTTCAAGGGAACTTAAATAAATGCTCATCATTATTTGGTGCTGCTGTCTCATTACTTTTTCGGGAGGTCTGGAAACAATTGTTTCCAGAATTAGAGTGTTTTTTTGAATTTGCACATCATTCAGATGATGCATTGTTCATTTATGGCTATCTGGAGCCTGAAGATGATGGAACAGATTGGTTTTTGTATGTATCACAGCAGATACAGGCAGGAAACTTTCATTGGCATGCTATAAATCAAGAGATGTGGAAGAGCATGTTTAATCTACATGAGCACTTACTATTAATGGGTTCTATTAAAGTGTCACCTAAGAAGACAACAGTATCACCTACTAATGCAGAATTTCTTTCTACTTTTTTTGAAGGTTGTGCTGTGTCAATCCCTTTTGTTAAAATCTTACTGGGTTCATTATCAGATCTTCCTGGGTTAGGTTTCTTTGATGATTTAGCAGCAGCACAAAGCAGATGTGTAAAGTCACTAGATTTGGGTGCTTGCCCACAATTAGCTCAACTAGCTATAGTATTATGCACAAGCAAAGTTGAGAGGTTGTATGGTACTGCTGATGGAATGGTAAACTCTCCAACAGCATTCCTTAAGGTGAATAAAGCACACGTACCAGTACCACTTGGTGGTGATGGCTCAATGTCTATTATGGAGCTTGCAACAGCTGGTTTTGGGATGGCAGATAAGAATATTTTAAAAAATGCATTCATATCTTATAAGCATACTCGTAGAGATGGTGATAGGTACGTATTGGGTTTATTTAAATTTTTGATGTCATTAAGTGAGGATGTATTCCAGCACGACCGATTGGGTGAGTTTAGTTTTGTAGGTAAAGTTCAATGGAAAGTGTTCACTCCTAAAGCTGAATTTGAATTTCATGATCAATTTTCACATAATTATTTATTAGAGTGGACACGTCAACATCCTGTGTATGACTATATTATTCCTAGAAATAGAGATAATTTGCTTGTATACCTTGTAAGAAAGTTGAATGATCCTAGCATCATTACAGCTATGACTATGCAGTCACCATTACAACTTCGTTTCCGTATGCAAGCAAAGCAACATATGAAAGTATGCCGGTATGAAGGTGAATGGGTCACATTCAGGGAGGTACTTGCTGCAGCTGATAGTTTTGCTACGAGTTACCAACCTACTGAAAGGGACATGGATCTCTTTAATACACTTGTAAGTTGTACATTTTCTAAAGAGTATGCTTGGAAAGACTTTTTAAATGAAGTAAGGTGTGAGGTCTTAACAACAAGACATGTACATAGGCCTAAAATTGCTAGGACATTCACTGTTAGAGAAAAGGACCAGGCTATACAAAATCCAATAAATTCGGTGATTGGCTATAAGTATGCTCTTACAGTGGATGAAGTCAGTGATGTTCTTGATAGTGCATTCTTCCCAGAGTCTCTATCTGCAGACTTACAGGTTATGAAAGATGGAGTTTACAGAGAATTAGGACTTGATATAAGTTCTCCTGAAGTCCTAAAACGCATAGCACCACTATTATATAAGGCAGGAAGGTCACGTGTTGTTATTGTGGAAGGAAATGTAGAAGGGACAGCTGAGTCAATCTGTAGTTATTGGCTCAAGACAATGTCACTGATTAAAACAATCAGAGTAAGACCTAAGAAGGAGGTACTGAAAGCTATGTCTTTATATAGTGTTAAAGAAAATATTGGATTGCAGGATGATATTGCAGCAACTCGACTATGCATAGAAATCTGGAGATGGTGTAAGGCAAATGAACAGGATGTTAAAGAATGGCTAACATCTCTGTACTTTGAAAAACAGACATTGATGGATTGGGTAGAAAGGTTTAGAAGGAAAGGAGTTGTTCCTATTGATCCTGAAATACAATGTATTGGCCTACTCTTATATGATGTATTAGGTTATAAAAGTGTGTTACAAATGCAAGCAAACCGAAGAGCCTATTCAGGTAAGCAATATGATGCATACTGTGTGCAAACATATAACGAGGAAACAAAACTATATGAAGGTGACCTTCGTGTTACTTTTAATTTTGGTTTAGATTGTGCAAGGTTAGAAGTTTTTTGGGATAAAAAAGAGTATATCTTAGAGACATCTATCACCCAACGACATGTGTTGCGGTTACTGATGGAAGAAGTGTCACAAGAATTAATTAGATGTGGAATGAGATTCAAAACAGAGCAAGTCAATCAAACTCGGAGCTTAGTGTTATTCAAAACAGAGGCTGGTTTTGAATGGGGTAAGCCTAATGTGCCATGTATTGTATATAAACACTGTGTCTTGAGAACTGGGCTTCGTACGAAACAGCCAATTAATAAAGAGTTCATGATAAATGTACAAAGTGATGGTTTCCGTGCAATAGCACAGATGGATATTGAGAGTCCACGGTTCTTGTTAGCACATGCATATCATACACTGCGTGATATTAGATATCAAGCAGTGCAGGCAGTAGGGAATGTATGGTTTAAAACAGAACAGCACAAACTATTTATTAACCCAATTATATCATCAGGGCTTTTAGAAAACTTTATGAAAGGCTTACCTGCTGCCATACCTCCTGCTGCATATTCCCTCATAATGAACAAGGCTAAGATTTCTGTGGATTTGTTTATGTTCAATGAGCTATTAGCACTTATAAATAGGAATAATATCCTCAACCTTGATGGGATTGAAGAAACATCTGAAGGTTATAGTACTGTGACATCAATGTCTAGCAAGCAGTGGTCTGAAGAGATGAGTTTAATGTCTGATGATGATATTGATGATATGGAGGACTTTACTATAGCACTGGATGATATTGACTTTGAACAAATAAATTTGGAAGAGGATATACAACACTTTCTGCAGGATGAATCAGCATATGTTGGTGATTTATTGATTCAGACAGAAGACATTGAGGTTAAAAAGATACGTGGGGTGACAAGAGTATTAGAGCCAGTCAAGCTATTAAAAAGCTGGGTTTCTAAAGGCCTTGCTATAGACAAAGTATACAATCCTATCGGGATAATCTTAATGGCAAGATACATGTCAAAAACATACAATTTCAGTTCAACACCTCTTGCACTATTAAATCCATATGACTTGACAGAACTTGAAAGTGTTGTAAAGGGATGGGGAGAAACTGTAAATGATCGATTCAAAGATTTAGATATTGAGGCACAAACAGTTGTTAAAGAAAAGGGTGTACAGCCAGAAGATGTACTCCCTGATTCATTATTCTCTTTCAGGCATGTTGATGTTTTGCTGCGAAGGTTGTTCCCGCGTGACCCTGTATCAACATTCTATTAGTGGATTTTATACCTTATTCATACAGTATGTATATTGTAGTGTTCTTTTCCCGGAGCATACTACTA"}} \ No newline at end of file diff --git a/data/nextstrain/orthohantavirus/andv/m/CHANGELOG.md b/data/nextstrain/orthohantavirus/andv/m/CHANGELOG.md index 247243235..64bfe4ca6 100644 --- a/data/nextstrain/orthohantavirus/andv/m/CHANGELOG.md +++ b/data/nextstrain/orthohantavirus/andv/m/CHANGELOG.md @@ -1,3 +1,9 @@ +## Unreleased + +- update outbreak name to 2026-Hondius +- make nucleotide default sequence view. +- add GPC amino acid substitutions + ## 2026-05-11T18:59:50Z - Updating Nextclade dataset with the latest sequences and metadata from Pathoplexus diff --git a/data/nextstrain/orthohantavirus/andv/m/pathogen.json b/data/nextstrain/orthohantavirus/andv/m/pathogen.json index 632d22a56..e10117588 100644 --- a/data/nextstrain/orthohantavirus/andv/m/pathogen.json +++ b/data/nextstrain/orthohantavirus/andv/m/pathogen.json @@ -10,7 +10,6 @@ "changelog": "CHANGELOG.md" }, "schemaVersion": "3.0.0", - "defaultCds": "GPC", "attributes": { "name": "Andesvirus (segment M)", "reference name": "Chile-9717869", diff --git a/data/nextstrain/orthohantavirus/andv/m/tree.json b/data/nextstrain/orthohantavirus/andv/m/tree.json index ba3986fd7..4e932fdea 100644 --- a/data/nextstrain/orthohantavirus/andv/m/tree.json +++ b/data/nextstrain/orthohantavirus/andv/m/tree.json @@ -1 +1 @@ -{"version": "v2", "meta": {"title": "Andes Virus M Segment (ANDV)", "updated": "2026-05-11", "build_url": "https://github.com/nextstrain/andv", "data_provenance": [{"name": "Pathoplexus", "url": "https://pathoplexus.org/"}], "maintainers": [{"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}], "display_defaults": {"map_triplicate": false, "color_by": "outbreak", "distance_measure": "div"}, "genome_annotations": {"Gc": {"end": 3468, "seqid": "defaults/m/reference.gb", "start": 2005, "strand": "+", "type": "CDS"}, "Gn": {"end": 2004, "seqid": "defaults/m/reference.gb", "start": 52, "strand": "+", "type": "CDS"}, "nuc": {"end": 3671, "start": 1, "strand": "+", "type": "source"}}, "colorings": [{"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "date", "title": "Collection Date", "type": "categorical"}, {"key": "region", "title": "Region", "type": "categorical", "scale": [["Africa", "#CEB541"], ["Europe", "#E39B39"], ["South America", "#E56C2F"]]}, {"key": "country", "title": "Country", "type": "categorical"}, {"key": "division", "title": "Admin Division", "type": "categorical"}, {"key": "host", "title": "Host", "type": "categorical"}, {"key": "abbr_authors", "title": "Authors", "type": "categorical"}, {"key": "dataUseTerms", "title": "Data use terms", "type": "categorical"}, {"key": "restrictedUntil", "title": "Restricted Until", "type": "categorical"}, {"key": "date_released", "title": "Release Date", "type": "categorical"}, {"key": "length", "title": "Length", "type": "continuous"}, {"key": "INSDC_accession", "title": "INSDC Accession", "type": "categorical"}, {"key": "PPX_accession", "title": "Pathoplexus Accession", "type": "categorical"}, {"key": "institution", "title": "Author Affiliations", "type": "categorical"}, {"key": "totalAmbiguousNucs", "title": "Ambiguous Nucleotides", "type": "continuous"}, {"key": "outbreak", "title": "outbreak", "type": "categorical"}], "filters": ["country", "division", "host", "abbr_authors", "clade_membership"], "geo_resolutions": [{"key": "country", "demes": {"Chile": {"latitude": -31.7613364, "longitude": -71.3187696}, "South Africa": {"latitude": -28.8166235, "longitude": 24.991639}, "Brazil": {"latitude": -10.3333332, "longitude": -53.1999999}, "Netherlands": {"latitude": 52.1326, "longitude": 5.2913}, "Switzerland": {"latitude": 46.8182, "longitude": 8.2275}, "Argentina": {"latitude": -37.052315, "longitude": -64.869142}}}], "panels": ["tree", "entropy"], "extensions": {"nextclade": {"clade_node_attrs": [{"name": "outbreak", "displayName": "Outbreak", "description": "Annotation of recent outbreaks (to be refined)", "skipAsReference": false}]}}}, "tree": {"name": "NODE_0000000", "node_attrs": {"div": 0, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A32C", "T34G", "G38A", "G43T", "G45A", "T47G", "T48A", "A51G", "C67T", "T75C", "C76T", "T78G", "A89C", "G93A", "C94T", "G114A", "G126A", "C141T", "C147T", "C159G", "C171T", "C174T", "A186T", "A189G", "T195G", "C201T", "T202C", "T219A", "A223T", "C231G", "G234A", "T240A", "T255C", "T267A", "G271A", "C273T", "G276A", "T282C", "T284A", "C285T", "C288A", "A291G", "C315A", "T324C", "C327A", "G339A", "C342A", "T345A", "C348A", "A360G", "T363C", "T372A", "A379C", "T387C", "A391G", "A393C", "C394T", "T402A", "C408T", "T414C", "A429T", "G444T", "C447T", "A456G", "A459C", "T462C", "T465C", "A468G", "T474C", "T477C", "T486A", "A507G", "T508A", "G510A", "A528G", "T531C", "T540A", "G546C", "A552T", "C555T", "A582C", "A591T", "G600A", "G603A", "G609A", "G615A", "C621T", "C624T", "A627T", "A636T", "T637C", "T643C", "A645C", "T648A", "T669G", "T672G", "C675A", "C678A", "T681G", "A685G", "C687T", 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Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3417}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VXMX|ANDV/Oligoryzomys longicaudatus/CHL/9717869_14/2002|nan/XXXX-XX-XX", "node_attrs": {"div": 0.208232, "strain": {"value": "PP_006VXMX|ANDV/Oligoryzomys longicaudatus/CHL/9717869_14/2002|nan/XXXX-XX-XX"}, "accession": "PP_006VXMX", "author": {"author": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F.", "value": "Tan, G.; Pickett, B.; Fedorova, N.; Amedeo, P.; Isom, R.; Hu, L.; Christensen, J.; Miller, J.; Durbin, A.; Williams, T.; Arumemi, F.; Noack, D.; Duehr, J.; Krammer, F."}, "outbreak": {"value": "unassigned"}, "date": {"value": "XXXX-XX-XX"}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2018-12-15"}, "PPX_accession": {"value": "PP_006VXMX.1", "url": "https://pathoplexus.org/seq/PP_006VXMX.1"}, "abbr_authors": {"value": "Tan et al."}, "INSDC_accession": {"value": "MK059782.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MK059782.1"}, "institution": {"value": "J. Craig Venter Institute"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "length": {"value": 3418}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, "root_sequence": {"GPC": "MEGWYLVVLGVCYTLTLAMPKTIYELKMECPHTVGLGQGYIIGSTELGLISIEAASDIKLESSCNFDLHTTSMAQKSFTQVEWRKKSDTTDTTNAASTTFEAQTKTVNLRGTCILAPELYDTLKKVKKTVLCYDLTCNQTHCQPTVYLIAPVLTCMSIRSCMASVFTSRIQVIYEKTHCVTGQLIEGQCFNPAHTLTLSQPAHTYDTVTLPISCFFTPKKSEQLKVIKTFEGILTKTGCTENALQGYYVCFLGSHSEPLIVPSLEDIRSAEVVSRMLVHPRGEDHDAIQNSQSHLRIVGPITAKVPSTSSTDTLKGTAFAGVPMYSSLSTLVRNADPEFVFSPGIVPESNHSTCDKKTVPITWTGYLPISGEMEKVTGCTVFCTLAGPGASCEAYSENGIFNISSPTCLVNKVQRFRGSEQKINFICQRVDQDVVVYCNGQKKVILTKTLVIGQCIYTFTSLFSLMPDVAHSLAVELCVPGLHGWATVMLLSTFCFGWVLIPAVTLIILKCLRVLTFSCSHYTNESKFKFILEKVKIEYQKTMGSMVCDVCHHECETAKELESHRQSCINGQCPYCMTITEATESALQAHYSICKLTGRFQEALKKSLKKPEVKKGCYRTLGVFRYKSRCYVGLVWCLLLTCEIVIWAASAETPLMESGWSDTAHGVGEIPMKTDLELDFSLPSSSSYSYRRKLTNPANKEESIPFHFQMEKQVIHAEIQPLGHWMDATFNIKTAFHCYGACQKYSYPWQTSKCFFEKDYQYETGWGCNPGDCPGVGTGCTACGVYLDKLKSVGKAYKIISLKYTRKVCIQLGTEQTCKHIDANDCLVTPSVKVCIVGTVSKLQPSDTLLFLGPLEQGGIILKQWCTTSCAFGDPGDIMSTPSGMRCPEHTGSFRKICGFATTPVCEYQGNTISGYKRMMATKDSFQSFNLTEPHITTNKLEWIDPDGNTRDHVNLVLNRDVSFQDLSDNPCKVDLHTQAIEGAWGSGVGFTLTCTVGLTECPSFMTSIKACDLAMCYGSTVTNLARGSNTVKVVGKGGHSGSSFKCCHDTDCSSEGLLASAPHLERVTGFNQIDSDKVYDDGAPPCTFKCWFTKSGEWLLGILNGNWIVVVVLVVILILSIIMFSVLCPRRGHKKTV*", "Gc": "ETPLMESGWSDTAHGVGEIPMKTDLELDFSLPSSSSYSYRRKLTNPANKEESIPFHFQMEKQVIHAEIQPLGHWMDATFNIKTAFHCYGACQKYSYPWQTSKCFFEKDYQYETGWGCNPGDCPGVGTGCTACGVYLDKLKSVGKAYKIISLKYTRKVCIQLGTEQTCKHIDANDCLVTPSVKVCIVGTVSKLQPSDTLLFLGPLEQGGIILKQWCTTSCAFGDPGDIMSTPSGMRCPEHTGSFRKICGFATTPVCEYQGNTISGYKRMMATKDSFQSFNLTEPHITTNKLEWIDPDGNTRDHVNLVLNRDVSFQDLSDNPCKVDLHTQAIEGAWGSGVGFTLTCTVGLTECPSFMTSIKACDLAMCYGSTVTNLARGSNTVKVVGKGGHSGSSFKCCHDTDCSSEGLLASAPHLERVTGFNQIDSDKVYDDGAPPCTFKCWFTKSGEWLLGILNGNWIVVVVLVVILILSIIMFSVLCPRRGHKKTV*", "Gn": "MEGWYLVVLGVCYTLTLAMPKTIYELKMECPHTVGLGQGYIIGSTELGLISIEAASDIKLESSCNFDLHTTSMAQKSFTQVEWRKKSDTTDTTNAASTTFEAQTKTVNLRGTCILAPELYDTLKKVKKTVLCYDLTCNQTHCQPTVYLIAPVLTCMSIRSCMASVFTSRIQVIYEKTHCVTGQLIEGQCFNPAHTLTLSQPAHTYDTVTLPISCFFTPKKSEQLKVIKTFEGILTKTGCTENALQGYYVCFLGSHSEPLIVPSLEDIRSAEVVSRMLVHPRGEDHDAIQNSQSHLRIVGPITAKVPSTSSTDTLKGTAFAGVPMYSSLSTLVRNADPEFVFSPGIVPESNHSTCDKKTVPITWTGYLPISGEMEKVTGCTVFCTLAGPGASCEAYSENGIFNISSPTCLVNKVQRFRGSEQKINFICQRVDQDVVVYCNGQKKVILTKTLVIGQCIYTFTSLFSLMPDVAHSLAVELCVPGLHGWATVMLLSTFCFGWVLIPAVTLIILKCLRVLTFSCSHYTNESKFKFILEKVKIEYQKTMGSMVCDVCHHECETAKELESHRQSCINGQCPYCMTITEATESALQAHYSICKLTGRFQEALKKSLKKPEVKKGCYRTLGVFRYKSRCYVGLVWCLLLTCEIVIWAASA", "nuc": "TAGTAGTAGACTCCGCAAGAAGAAGCAAAAAATTAAAGAAGTGAGTTTAAAATGGAAGGGTGGTATCTGGTTGTTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCCAAGACCATTTATGAGCTTAAAATGGAATGCCCGCACACTGTGGGTCTCGGTCAAGGTTACATCATTGGCTCAACAGAACTAGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTCGAGAGCTCTTGCAATTTTGATCTTCATACAACATCTATGGCCCAGAAGAGTTTCACCCAAGTTGAATGGAGAAAGAAAAGTGACACAACTGATACCACAAATGCTGCGTCCACTACCTTTGAAGCACAAACTAAAACTGTTAACCTTAGAGGGACTTGTATACTGGCACCTGAACTCTATGATACATTGAAGAAAGTAAAAAAGACAGTCCTGTGCTATGATCTAACATGTAATCAAACACATTGTCAGCCAACTGTCTATCTGATTGCACCTGTATTGACATGCATGTCAATAAGAAGTTGTATGGCTAGTGTGTTTACAAGCAGGATTCAGGTGATTTATGAAAAGACACATTGTGTAACAGGTCAGCTGATTGAGGGTCAGTGTTTCAACCCAGCACACACATTGACATTATCTCAGCCTGCTCACACTTATGATACTGTCACCCTTCCTATCTCTTGTTTTTTCACACCAAAGAAGTCGGAGCAACTAAAAGTTATAAAAACATTTGAAGGAATTCTGACGAAGACAGGTTGCACGGAGAATGCATTGCAGGGTTATTATGTGTGTTTTTTAGGGAGTCATTCAGAACCTTTAATTGTTCCGAGTTTGGAGGACATACGGTCTGCTGAAGTTGTTAGTAGGATGCTTGTACACCCTAGGGGAGAAGACCATGATGCCATACAGAATTCACAAAGTCACTTAAGAATAGTGGGACCTATCACAGCAAAAGTGCCATCAACTAGTTCCACAGATACCCTAAAGGGGACAGCCTTTGCAGGCGTCCCAATGTATAGCTCTTTATCTACACTAGTCAGAAATGCAGACCCAGAATTTGTATTTTCTCCAGGTATAGTACCTGAATCTAATCACAGTACATGTGATAAGAAGACAGTACCTATCACATGGACAGGCTACCTACCAATATCAGGTGAGATGGAAAAAGTGACTGGATGTACAGTTTTTTGTACACTAGCAGGACCTGGTGCTAGTTGTGAGGCCTATTCTGAAAATGGTATATTTAACATCAGTTCTCCAACATGTCTTGTAAACAAAGTCCAAAGATTTCGTGGATCTGAACAGAAAATAAATTTTATCTGTCAGCGGGTAGATCAGGATGTTGTTGTATACTGCAATGGGCAAAAGAAAGTCATATTAACCAAAACTTTGGTTATTGGGCAGTGTATTTATACATTCACAAGCCTATTTTCATTGATGCCTGATGTAGCCCACTCATTGGCTGTAGAATTATGTGTCCCGGGATTACATGGATGGGCCACTGTCATGCTTCTATCAACATTCTGCTTTGGGTGGGTCTTGATTCCTGCGGTCACATTAATAATATTAAAGTGTCTAAGGGTTTTGACGTTTTCTTGTTCCCATTACACTAATGAGTCAAAATTTAAATTCATCCTGGAAAAAGTTAAAATTGAATACCAAAAGACTATGGGATCAATGGTGTGCGATGTATGTCATCATGAGTGTGAAACAGCAAAAGAACTTGAATCACATAGACAGAGTTGTATCAATGGACAATGTCCTTATTGCATGACAATAACTGAAGCAACTGAAAGTGCCTTGCAAGCCCATTATTCCATTTGTAAATTGACAGGAAGATTTCAGGAGGCACTGAAAAAGTCACTTAAAAAGCCAGAGGTAAAAAAAGGTTGTTACAGAACACTCGGGGTATTTAGATATAAAAGTAGATGTTATGTGGGTTTGGTATGGTGCCTATTGTTGACATGTGAAATTGTTATTTGGGCCGCAAGTGCAGAGACTCCACTAATGGAGTCAGGCTGGTCAGATACGGCTCATGGTGTTGGTGAGATTCCAATGAAGACAGACCTCGAGCTGGACTTTTCACTGCCTTCTTCATCCTCTTACAGTTATAGGAGAAAGCTCACAAACCCAGCCAATAAAGAAGAGTCTATTCCCTTCCACTTCCAGATGGAAAAACAAGTAATTCATGCTGAAATCCAACCCCTGGGTCATTGGATGGATGCGACATTTAATATTAAGACTGCATTTCATTGTTATGGTGCATGCCAGAAATACTCTTATCCATGGCAGACATCTAAGTGCTTCTTTGAAAAGGACTACCAGTATGAAACAGGCTGGGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGATGCACTGCTTGTGGTGTTTATCTCGATAAACTAAAATCTGTTGGGAAGGCCTATAAGATAATTTCTTTAAAATATACCAGAAAGGTTTGTATTCAGTTAGGAACAGAACAAACTTGCAAGCATATTGATGCAAATGATTGTTTAGTGACACCATCTGTGAAAGTTTGCATAGTGGGCACAGTTTCAAAACTTCAACCATCTGATACTCTTTTGTTCTTAGGTCCACTAGAACAAGGGGGAATCATTCTTAAGCAATGGTGCACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCCACTCCCAGTGGTATGAGGTGTCCAGAGCACACTGGATCATTTAGGAAAATTTGCGGTTTTGCTACTACACCAGTTTGTGAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATGGCAACAAAAGATTCATTCCAATCATTTAACTTAACAGAACCTCACATCACAACAAACAAGCTTGAATGGATCGACCCAGATGGGAATACAAGAGACCACGTAAACCTTGTCTTAAATAGAGATGTCTCATTTCAGGATTTAAGTGATAACCCCTGTAAAGTAGACCTACACACACAAGCAATAGAAGGGGCATGGGGTTCTGGTGTAGGGTTTACACTCACATGTACTGTCGGATTAACAGAGTGCCCAAGTTTTATGACATCAATTAAGGCATGTGACCTAGCTATGTGTTATGGATCAACAGTAACAAACCTTGCCAGGGGCTCTAATACAGTGAAAGTAGTTGGTAAAGGAGGCCATTCAGGGTCCTCATTTAAATGCTGTCATGATACAGATTGCTCCTCTGAAGGTTTACTTGCATCAGCCCCTCATCTTGAGAGGGTAACAGGATTCAATCAAATTGATTCAGATAAGGTTTATGATGATGGTGCACCACCTTGCACATTCAAATGCTGGTTCACTAAGTCAGGTGAGTGGCTTCTTGGGATCTTAAACGGGAATTGGATTGTTGTTGTAGTGCTTGTTGTGATACTCATTCTCTCTATCATAATGTTCAGTGTTTTGTGTCCCAGGAGAGGGCACAAGAAAACTGTCTAAGCATTGACCTCAACTCCTACATTAGATCATATACATTTATGCACTTCCTCATATTTAGCTGCACTAAGATATTAATAAACTCTAGTTATTGACTTTATAAGATTATTATGGAACTAACCTCACTTAAAAAAAACAAATACTTTACTCATATATAACTCCATATTCTCTTACCGAGGCTTTTGTTCCTGCGGAGCATACTACTA"}} \ No newline at end of file diff --git a/data/nextstrain/orthohantavirus/andv/s/CHANGELOG.md b/data/nextstrain/orthohantavirus/andv/s/CHANGELOG.md index 247243235..894bac942 100644 --- a/data/nextstrain/orthohantavirus/andv/s/CHANGELOG.md +++ b/data/nextstrain/orthohantavirus/andv/s/CHANGELOG.md @@ -1,3 +1,10 @@ +## Unreleased + +- update outbreak name to 2026-Hondius +- make nucleotide default sequence view. +- add GPC amino acid substitutions + + ## 2026-05-11T18:59:50Z - Updating Nextclade dataset with the latest sequences and metadata from Pathoplexus diff --git a/data/nextstrain/orthohantavirus/andv/s/pathogen.json b/data/nextstrain/orthohantavirus/andv/s/pathogen.json index 0db90ae3b..6234b2ea0 100644 --- a/data/nextstrain/orthohantavirus/andv/s/pathogen.json +++ b/data/nextstrain/orthohantavirus/andv/s/pathogen.json @@ -10,7 +10,6 @@ "changelog": "CHANGELOG.md" }, "schemaVersion": "3.0.0", - "defaultCds": "N", "attributes": { "name": "Andesvirus (segment S)", "reference name": "Chile-9717869", diff --git a/data/nextstrain/orthohantavirus/andv/s/tree.json b/data/nextstrain/orthohantavirus/andv/s/tree.json index c7392873c..0396df329 100644 --- a/data/nextstrain/orthohantavirus/andv/s/tree.json +++ b/data/nextstrain/orthohantavirus/andv/s/tree.json @@ -1 +1 @@ -{"version": "v2", "meta": {"title": "Andes Virus S Segment (ANDV)", "updated": "2026-05-11", "build_url": "https://github.com/nextstrain/andv", "data_provenance": [{"name": "Pathoplexus", "url": "https://pathoplexus.org/"}], "maintainers": [{"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}], "display_defaults": {"map_triplicate": false, "color_by": "outbreak", "distance_measure": "div"}, "genome_annotations": {"N": {"end": 1329, "seqid": "defaults/s/reference.gb", "start": 43, "strand": "+", "type": "CDS"}, "NSs": {"end": 313, "seqid": "defaults/s/reference.gb", "start": 122, "strand": "+", "type": "CDS"}, "nuc": {"end": 1871, "start": 1, "strand": "+", "type": "source"}}, "colorings": [{"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "date", "title": "Collection Date", "type": "categorical"}, {"key": "region", "title": "Region", "type": "categorical", "scale": [["Africa", "#CEB541"], ["Europe", "#E39B39"], ["South America", "#E56C2F"]]}, {"key": "country", "title": "Country", "type": "categorical"}, {"key": "division", "title": "Admin Division", "type": "categorical"}, {"key": "host", "title": "Host", "type": "categorical"}, {"key": "abbr_authors", "title": "Authors", "type": "categorical"}, {"key": "dataUseTerms", "title": "Data use terms", "type": "categorical"}, {"key": "restrictedUntil", "title": "Restricted Until", "type": "categorical"}, {"key": "date_released", "title": "Release Date", "type": "categorical"}, {"key": "length", "title": "Length", "type": "continuous"}, {"key": "INSDC_accession", "title": "INSDC Accession", "type": "categorical"}, {"key": "PPX_accession", "title": "Pathoplexus Accession", "type": "categorical"}, {"key": "institution", "title": "Author Affiliations", "type": "categorical"}, {"key": "totalAmbiguousNucs", "title": "Ambiguous Nucleotides", "type": "continuous"}, {"key": "outbreak", "title": "outbreak", "type": "categorical"}], "filters": ["country", "division", "host", "abbr_authors", "clade_membership"], "geo_resolutions": [{"key": "country", "demes": {"Switzerland": {"latitude": 46.8182, "longitude": 8.2275}, "Netherlands": {"latitude": 52.1326, "longitude": 5.2913}, "Chile": {"latitude": -31.7613364, "longitude": -71.3187696}, "Paraguay": {"latitude": -23.3165935, "longitude": -58.1693445}, "South Africa": {"latitude": -28.8166235, "longitude": 24.991639}, "Brazil": {"latitude": -10.3333332, "longitude": -53.1999999}, "Uruguay": {"latitude": -33.0, "longitude": -56.0}, "Peru": {"latitude": -9.650468, "longitude": -75.328211}, "Bolivia": {"latitude": -17.0568696, "longitude": -64.9912286}, "Argentina": {"latitude": -37.052315, "longitude": -64.869142}}}], "panels": ["tree", "entropy"], "extensions": {"nextclade": {"clade_node_attrs": [{"name": "outbreak", "displayName": "Outbreak", "description": "Annotation of recent outbreaks (to be refined)", "skipAsReference": false}], "placement_masks": [{"begin": 0, "end": 42}, {"begin": 1329, "end": 1871}]}}}, "tree": {"name": "NODE_0000000", "node_attrs": {"div": 0, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["G63A", "C72T", "A78C", "G120A", "G129A", "A135G", "G150A", "C156G", "T225C", "T244C", "T262C", "T306C", "A312G", "A321G", "A333G", "T354C", "T357C", "A360C", "T366C", "T367C", "G369T", "G378A", "A384T", "G387A", "T390A", "A408T", "A411G", "A414T", "C420A", "T421C", "A423G", "G426A", "G438A", "C444A", "G450A", "C453T", "G465T", "A468C", "A480G", "A483G", "T486A", "G489C", "A492G", "G510A", "T519C", "T531A", "C546G", "T558G", "A561G", "A567G", "C570T", "T573G", "C576T", "G597A", "T603A", "A618G", "C621A", "G624A", "C631A", "A633G", "T636C", "G639A", "T648A", "C654T", "T657A", 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\ No newline at end of file From aee2b400ab219e241153886413013af910f759a7 Mon Sep 17 00:00:00 2001 From: nextstrain-bot Date: Tue, 12 May 2026 15:40:15 +0000 Subject: [PATCH 2/7] chore: rebuild [skip ci] --- data_output/index.json | 18 +- .../andv/l/unreleased/CHANGELOG.md | 16 + .../andv/l/unreleased/README.md | 18 + .../andv/l/unreleased/dataset.zip | Bin 0 -> 311155 bytes .../andv/l/unreleased/genome_annotation.gff3 | 7 + .../andv/l/unreleased/pathogen.json | 65 + .../andv/l/unreleased/reference.fasta | 111 ++ .../andv/l/unreleased/sequences.fasta | 1102 +++++++++++++++++ .../andv/l/unreleased/tree.json | 1 + .../andv/m/unreleased/CHANGELOG.md | 15 + .../andv/m/unreleased/README.md | 17 + .../andv/m/unreleased/dataset.zip | Bin 0 -> 328326 bytes .../andv/m/unreleased/genome_annotation.gff3 | 9 + .../andv/m/unreleased/pathogen.json | 65 + .../andv/m/unreleased/reference.fasta | 63 + .../andv/m/unreleased/sequences.fasta | 466 +++++++ .../andv/m/unreleased/tree.json | 1 + .../andv/s/unreleased/CHANGELOG.md | 16 + .../andv/s/unreleased/README.md | 18 + .../andv/s/unreleased/dataset.zip | Bin 0 -> 244944 bytes .../andv/s/unreleased/genome_annotation.gff3 | 8 + .../andv/s/unreleased/pathogen.json | 67 + .../andv/s/unreleased/reference.fasta | 33 + .../andv/s/unreleased/sequences.fasta | 293 +++++ .../andv/s/unreleased/tree.json | 1 + 25 files changed, 2404 insertions(+), 6 deletions(-) create mode 100644 data_output/nextstrain/orthohantavirus/andv/l/unreleased/CHANGELOG.md create mode 100644 data_output/nextstrain/orthohantavirus/andv/l/unreleased/README.md create mode 100644 data_output/nextstrain/orthohantavirus/andv/l/unreleased/dataset.zip create mode 100644 data_output/nextstrain/orthohantavirus/andv/l/unreleased/genome_annotation.gff3 create mode 100644 data_output/nextstrain/orthohantavirus/andv/l/unreleased/pathogen.json create mode 100644 data_output/nextstrain/orthohantavirus/andv/l/unreleased/reference.fasta create mode 100644 data_output/nextstrain/orthohantavirus/andv/l/unreleased/sequences.fasta create mode 100644 data_output/nextstrain/orthohantavirus/andv/l/unreleased/tree.json create mode 100644 data_output/nextstrain/orthohantavirus/andv/m/unreleased/CHANGELOG.md create mode 100644 data_output/nextstrain/orthohantavirus/andv/m/unreleased/README.md create mode 100644 data_output/nextstrain/orthohantavirus/andv/m/unreleased/dataset.zip create mode 100644 data_output/nextstrain/orthohantavirus/andv/m/unreleased/genome_annotation.gff3 create mode 100644 data_output/nextstrain/orthohantavirus/andv/m/unreleased/pathogen.json create mode 100644 data_output/nextstrain/orthohantavirus/andv/m/unreleased/reference.fasta create mode 100644 data_output/nextstrain/orthohantavirus/andv/m/unreleased/sequences.fasta create mode 100644 data_output/nextstrain/orthohantavirus/andv/m/unreleased/tree.json create mode 100644 data_output/nextstrain/orthohantavirus/andv/s/unreleased/CHANGELOG.md create mode 100644 data_output/nextstrain/orthohantavirus/andv/s/unreleased/README.md create mode 100644 data_output/nextstrain/orthohantavirus/andv/s/unreleased/dataset.zip create mode 100644 data_output/nextstrain/orthohantavirus/andv/s/unreleased/genome_annotation.gff3 create mode 100644 data_output/nextstrain/orthohantavirus/andv/s/unreleased/pathogen.json create mode 100644 data_output/nextstrain/orthohantavirus/andv/s/unreleased/reference.fasta create mode 100644 data_output/nextstrain/orthohantavirus/andv/s/unreleased/sequences.fasta create mode 100644 data_output/nextstrain/orthohantavirus/andv/s/unreleased/tree.json diff --git a/data_output/index.json b/data_output/index.json index 304808e62..1525f3dc1 100644 --- a/data_output/index.json +++ b/data_output/index.json @@ -2972,6 +2972,9 @@ ] }, "versions": [ + { + "tag": "unreleased" + }, { "updatedAt": "2026-05-11T18:59:50Z", "tag": "2026-05-11--18-59-50Z" @@ -2982,8 +2985,7 @@ } ], "version": { - "updatedAt": "2026-05-11T18:59:50Z", - "tag": "2026-05-11--18-59-50Z" + "tag": "unreleased" } }, { @@ -3016,6 +3018,9 @@ ] }, "versions": [ + { + "tag": "unreleased" + }, { "updatedAt": "2026-05-11T18:59:50Z", "tag": "2026-05-11--18-59-50Z" @@ -3026,8 +3031,7 @@ } ], "version": { - "updatedAt": "2026-05-11T18:59:50Z", - "tag": "2026-05-11--18-59-50Z" + "tag": "unreleased" } }, { @@ -3060,6 +3064,9 @@ ] }, "versions": [ + { + "tag": "unreleased" + }, { "updatedAt": "2026-05-11T18:59:50Z", "tag": "2026-05-11--18-59-50Z" @@ -3070,8 +3077,7 @@ } ], "version": { - "updatedAt": "2026-05-11T18:59:50Z", - "tag": "2026-05-11--18-59-50Z" + "tag": "unreleased" } }, { diff --git a/data_output/nextstrain/orthohantavirus/andv/l/unreleased/CHANGELOG.md b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/CHANGELOG.md new file mode 100644 index 000000000..894bac942 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/CHANGELOG.md @@ -0,0 +1,16 @@ +## Unreleased + +- update outbreak name to 2026-Hondius +- make nucleotide default sequence view. +- add GPC amino acid substitutions + + +## 2026-05-11T18:59:50Z + +- Updating Nextclade dataset with the latest sequences and metadata from Pathoplexus +- Include 2026 outbreak sequences +- add 2026 outbreak annotation + +## 2026-05-08T21:17:05Z + + - initial release diff --git a/data_output/nextstrain/orthohantavirus/andv/l/unreleased/README.md b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/README.md new file mode 100644 index 000000000..cf68bab91 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/README.md @@ -0,0 +1,18 @@ +# Andesvirus segment L dataset + +| Key | Value | +| :-- | :-- | +| name | Andes virus segment L Tree | +| authors | [Nextstrain](https://nextstrain.org) | +| reference | [NC_003468](www.ncbi.nlm.nih.gov/nuccore/NC_003468) | +| workflow | https://github.com/nextstrain/andv/tree/main/nextclade | +| path | `nextstrain/orthohantavirus/andv/l` | + + +This dataset aligns sequences to the RefSeq entry [NC_003468](www.ncbi.nlm.nih.gov/nuccore/NC_003468) and places the sequences onto a tree build using sequences from INSDC and Pathoplexus. +Sequences from the 2026 outbreak were rapidly shared by several laboratories around the world to facilitate outbreak investigations. These data have been released under RESTRICTED USE terms on Pathoplexus. +We refer to the [summary of the initial investigations by this collaboration on virological.org](https://virological.org/t/preliminary-analysis-of-orthohantavirus-andesense-virus-sequences-from-a-cruise-ship-related-cluster-may-2026/1029) for further details. + +## What are Nextclade datasets + +Read more about Nextclade datasets in the Nextclade documentation: https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html diff --git a/data_output/nextstrain/orthohantavirus/andv/l/unreleased/dataset.zip b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/dataset.zip new file mode 100644 index 0000000000000000000000000000000000000000..276084415a2fb4b95b996716bf112dbcec6a8388 GIT binary patch literal 311155 zcmeF(%dTbFmEL#Ck_9ke!yVfVH;f~e8!AY7C6iaMjI1P;qE*GB$gC1zK`0$YoXiYW zWJD@1yx0=pw{XLcVE8!R?K#IB;~U@j#$0Rd zeNJTl>>vHjzxAJf?L7X@*Z#Nv;~)Re|NL)!?Q35DQN|Dc;rl=R@W+4hXCJ=#*`q)B 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zznKAHOcM6SveTf-s_%Rd7SLo-i50f8szt-f4;xQCQ6X>vo;N5MN%KblE5FvW&lnwJ zN>r_ljdkDFg5VSE))7lln|0P;LKhumA1eJbR}9|6#n< zuYctE*|X|F1sQthPt7ksyt`fUzxcoZw}1XW{Cm%y>Hj}h=J@lEfAeoCJ3tbCSYJ@= zpT7B*|Lnj1C(oYg|9_gw@cSSC=HQ<_d-mP*?EJ&@_2lgA++AIL`Q5kQ=5IIsfBq-` z@Bh~%xBmY}H|qFb{)1=FOc9!jzWn>k^RwGU|GU#~FKhq#vuFDMAKxhYpYeDx{dRgG zZJIB?om^f`ZWsP{h3dciAOH4mp6UP1!vFSPK6{olaV{4Z{-6JwL8NC_003468.2 Andes virus segment L, complete genome +TAGTAGTAGACTCCGGGATAGAAAAAGTTAGAAAAATGGAAAAGTATAGAGAGATTCATC +AGAGAGTTAGGGACCTTGCACCTGGAACGGTATCAGCATTAGAATGCATAGATCTACTGG +ATAGGCTCTACGCTGTCAGACATGACCTGGTTGACCAGATGATAAAACATGACTGGTCTG +ATAATAAAGATGTAGAAAGACCTATAGGTCAAGTTTTACTGATGGCTGGCATACCTAATG +ATATTATACAAGGCATGGAGAAGAAGATTATACCAAATAGCCCTTCTGGACAAGTATTGA +AAAGCTTTTTCCGAATGACACCAGATAATTATAAAATTACAGGTAACTTGATTGAGTTTA +TTGAAGTGACTGTAACAGCTGATGTGTCACGAGGTATTAGGGAGAAGAAAATAAAGTATG +AAGGAGGCCTCCAATTTGTTGAGCACTTACTGGAAACTGAATCAAGGAAGGGTAATATAC +CGCAACCTTATAAAATAACATTCTCAGTGGTTGCAGTTAAAACAGATGGATCAAACATCT +CGACTCAGTGGCCCAGTCGGAGGAACGATGGGGTAGTTCAGCACATGCGTCTAGTCCAAG +CTGATATAAATTATGTCAGAGAGCATTTAATAAAGTTAGATGAGAGAGCATCTTTGGAGG +CAATGTTTAACTTAAAGTTCCATGTATCAGGCCCTAAACTGAGATACTTTAACATCCCTG +ATTATAGACCACAGCAGCTATGTGAACCACGGATTGACAACTTAATACAATATTGCAAGA +ATTGGTTGACAAAAGAACATAAGTTTGTATTCAAAGAAGTCAGTGGAGCTAATGTGATTC +AAGCATTTGAGAGTCATGAACAGTTACATTTACAGAAATACAACGAATCACGAAAACCAA +GAAATTTTTTACTCTTGCAGCTTACAGTGCAAGGGGCATATCTACCATCAACAATCAGTT +CTGACCAGTGCAATACTAGGATTGGGTGTCTAGAAATATCAAAAAACCAACCAGAAACAC +CAGTACAGATGCTTGCATTGGATATATCTTATAAGTATCTGAGTCTTACAAGGGATGAGT +TGATCAATTATTATAGCCCTAGAGTGCACTTTCAATCGAGCCCTAATGTGAAGGAACCAG +GGACACTGAAGTTAGGATTATCACAATTAAATCCACTCTCTAAATCAATTCTTGACAATG +TTGGAAAGCATAAAAAGGATAAAGGATTATTTGGTGAGATCATAGATAGCATAAATGTGG +CAAGTCAAATACAGATCAATGCATGTGCAAAAATAATTGAGCAGATCTTATCAAATCTTG +AAATAAACATTGGAGAAATAAATGCTAGTATGCCTTCTCCTAATAAGACAACAGGTGTAG +ATGACCTGTTAAATAAATTTTATGATAATGAGCTTGGTAAATATATGTTATCCATTCTGA +GGAAAACAGCAGCATGGCATATAGGCCATCTAGTCAGAGATATCACAGAAAGTTTAATTG +CACATGCTGGGCTGCGCCGTTCTAAATATTGGTCAGTACATGCATATGACCATGGGAATG +TAATTTTGTTTATCTTGCCATCAAAGTCACTAGAGGTAGTAGGTTCTTATATAAGGTATT +TCACAGTATTTAAAGATGGTATAGGGTTGATAGACGCAGATAATATTGATTCTAAGGCCG +AAATTGATGGTGTCACCTGGTGTTATTCTAAGGTCATGAGTATTGATTTAAACAGGTTAT +TGGCTTTGAACATAGCTTTTGAGAAGTCACTTCTTGCCACGGCTACATGGTTCCAATATT +ATACTGAAGACCAAGGCCATTTTCCCCTTCAACATGCATTAAGGTCAATCTTTTCTTTCC +ACTTTTTACTCTGTGTGTCACAAAAGATGAAGCTATGTGCAATATTTGATAACCTTCGTT +ATCTGATACCATCAGTAACATCTTTGTACTCTGGGTACGAGTTGTTAATAGAAAAATTCT +TTGAGAGACCATTTAAGAGTTCACTGGATGTATACCTTTATTCTATCATAAAATCTCTAT +TAATTAGTTTGGCACAAAATAATAAAGTTCGATTTTACTCAAGAGTTCGTTTGTTAGGAT +TGACAGTTGATCACTCCACGGTCGGAGCAAGTGGTGTTTACCCCTCTTTAATGTCCCGTG +TTGTTTACAAACATTACAGAAGTTTAATCTCTGAAGCTACAACTTGTTTTTTCTTATTTG +AAAAGGGTTTGCATGGGAATTTACCAGAAGAGGCTAAAATACATCTTGAAACCATTGAAT +GGGCTCGGAAGTTCCAGGAGAAAGAAAAACAATATGGTGATATTCTTCTAAAGGAAGGCT +ATACAATTGAATCTGTAATCAATGGAGAAGTTGATGTAGAACAACAGCTTTTTTGTCAGG +AGGTCTCAGAGCTAAGTGCACAAGAGCTCAACAAATATTTACAGGCAAAATCTCAAGTTT +TATGTGCTAATATCATGAATAAACACTGGGACAAACCATATTTCAGTCAAACACGCAATA +TCAGTCTCAAGGGAATGTCTGGGGCATTGCAAGAGGATGGACATTTAGCTGCTAGTGTGA +CACTGATTGAAGCAATTAGGTTTTTAAATAGATCACAAACCAATCCAAATGTTATTGATA +TGTATGAGCAGACTAAACAATCAAAGGCACAAGCTAGGATTGTTAGGAAATACCAGAGAA +CAGAAGCAGATAGAGGATTTTTTATCACAACATTACCAACTAGGGTGCGATTAGAAATAA +TAGAAGATTATTTCGATGCAATTGCAAAGGTTGTGCCTGAAGAATATATTTCTTATGGTG +GGGATAAAAAAGTTCTAAATATTCAGAATGCACTAGAGAAAGCACTTAGATGGGCATCTG +GAGTATCAGAAATTACAACAAGCACTGGTAAAAGCATCAAGTTTAAGCGGAAATTAATGT +ATGTTAGTGCTGATGCCACAAAATGGTCACCAGGAGATAATTCTGCTAAGTTTAGGAGAT +TTACACAAGCAATATATGATGGCTTATCAGACAACAAACTGAAATGTTGTGTTGTTGATG +CATTACGTAACATTTATGAGACTGAATTTTTTATGTCCAGGAAATTACACCGATATATTG +ATAGTATGGAAAATCATTCAGATGCGGTTGAAGATTTCTTGGCATTTTTCTCAAATGGAG +TCTCAGCCAATGTAAAGGGAAACTGGCTTCAAGGGAACTTAAATAAATGCTCATCATTAT +TTGGTGCTGCTGTCTCATTACTTTTTCGGGAGGTCTGGAAACAATTGTTTCCAGAATTAG +AGTGTTTTTTTGAATTTGCACATCATTCAGATGATGCATTGTTCATTTATGGCTATCTGG +AGCCTGAAGATGATGGAACAGATTGGTTTTTGTATGTATCACAGCAGATACAGGCAGGAA +ACTTTCATTGGCATGCTATAAATCAAGAGATGTGGAAGAGCATGTTTAATCTACATGAGC +ACTTACTATTAATGGGTTCTATTAAAGTGTCACCTAAGAAGACAACAGTATCACCTACTA +ATGCAGAATTTCTTTCTACTTTTTTTGAAGGTTGTGCTGTGTCAATCCCTTTTGTTAAAA +TCTTACTGGGTTCATTATCAGATCTTCCTGGGTTAGGTTTCTTTGATGATTTAGCAGCAG +CACAAAGCAGATGTGTAAAGTCACTAGATTTGGGTGCTTGCCCACAATTAGCTCAACTAG +CTATAGTATTATGCACAAGCAAAGTTGAGAGGTTGTATGGTACTGCTGATGGAATGGTAA +ACTCTCCAACAGCATTCCTTAAGGTGAATAAAGCACACGTACCAGTACCACTTGGTGGTG +ATGGCTCAATGTCTATTATGGAGCTTGCAACAGCTGGTTTTGGGATGGCAGATAAGAATA +TTTTAAAAAATGCATTCATATCTTATAAGCATACTCGTAGAGATGGTGATAGGTACGTAT +TGGGTTTATTTAAATTTTTGATGTCATTAAGTGAGGATGTATTCCAGCACGACCGATTGG +GTGAGTTTAGTTTTGTAGGTAAAGTTCAATGGAAAGTGTTCACTCCTAAAGCTGAATTTG +AATTTCATGATCAATTTTCACATAATTATTTATTAGAGTGGACACGTCAACATCCTGTGT +ATGACTATATTATTCCTAGAAATAGAGATAATTTGCTTGTATACCTTGTAAGAAAGTTGA +ATGATCCTAGCATCATTACAGCTATGACTATGCAGTCACCATTACAACTTCGTTTCCGTA +TGCAAGCAAAGCAACATATGAAAGTATGCCGGTATGAAGGTGAATGGGTCACATTCAGGG +AGGTACTTGCTGCAGCTGATAGTTTTGCTACGAGTTACCAACCTACTGAAAGGGACATGG +ATCTCTTTAATACACTTGTAAGTTGTACATTTTCTAAAGAGTATGCTTGGAAAGACTTTT +TAAATGAAGTAAGGTGTGAGGTCTTAACAACAAGACATGTACATAGGCCTAAAATTGCTA +GGACATTCACTGTTAGAGAAAAGGACCAGGCTATACAAAATCCAATAAATTCGGTGATTG +GCTATAAGTATGCTCTTACAGTGGATGAAGTCAGTGATGTTCTTGATAGTGCATTCTTCC +CAGAGTCTCTATCTGCAGACTTACAGGTTATGAAAGATGGAGTTTACAGAGAATTAGGAC +TTGATATAAGTTCTCCTGAAGTCCTAAAACGCATAGCACCACTATTATATAAGGCAGGAA +GGTCACGTGTTGTTATTGTGGAAGGAAATGTAGAAGGGACAGCTGAGTCAATCTGTAGTT +ATTGGCTCAAGACAATGTCACTGATTAAAACAATCAGAGTAAGACCTAAGAAGGAGGTAC +TGAAAGCTATGTCTTTATATAGTGTTAAAGAAAATATTGGATTGCAGGATGATATTGCAG +CAACTCGACTATGCATAGAAATCTGGAGATGGTGTAAGGCAAATGAACAGGATGTTAAAG +AATGGCTAACATCTCTGTACTTTGAAAAACAGACATTGATGGATTGGGTAGAAAGGTTTA +GAAGGAAAGGAGTTGTTCCTATTGATCCTGAAATACAATGTATTGGCCTACTCTTATATG +ATGTATTAGGTTATAAAAGTGTGTTACAAATGCAAGCAAACCGAAGAGCCTATTCAGGTA +AGCAATATGATGCATACTGTGTGCAAACATATAACGAGGAAACAAAACTATATGAAGGTG +ACCTTCGTGTTACTTTTAATTTTGGTTTAGATTGTGCAAGGTTAGAAGTTTTTTGGGATA +AAAAAGAGTATATCTTAGAGACATCTATCACCCAACGACATGTGTTGCGGTTACTGATGG +AAGAAGTGTCACAAGAATTAATTAGATGTGGAATGAGATTCAAAACAGAGCAAGTCAATC +AAACTCGGAGCTTAGTGTTATTCAAAACAGAGGCTGGTTTTGAATGGGGTAAGCCTAATG +TGCCATGTATTGTATATAAACACTGTGTCTTGAGAACTGGGCTTCGTACGAAACAGCCAA +TTAATAAAGAGTTCATGATAAATGTACAAAGTGATGGTTTCCGTGCAATAGCACAGATGG +ATATTGAGAGTCCACGGTTCTTGTTAGCACATGCATATCATACACTGCGTGATATTAGAT +ATCAAGCAGTGCAGGCAGTAGGGAATGTATGGTTTAAAACAGAACAGCACAAACTATTTA +TTAACCCAATTATATCATCAGGGCTTTTAGAAAACTTTATGAAAGGCTTACCTGCTGCCA +TACCTCCTGCTGCATATTCCCTCATAATGAACAAGGCTAAGATTTCTGTGGATTTGTTTA +TGTTCAATGAGCTATTAGCACTTATAAATAGGAATAATATCCTCAACCTTGATGGGATTG +AAGAAACATCTGAAGGTTATAGTACTGTGACATCAATGTCTAGCAAGCAGTGGTCTGAAG +AGATGAGTTTAATGTCTGATGATGATATTGATGATATGGAGGACTTTACTATAGCACTGG +ATGATATTGACTTTGAACAAATAAATTTGGAAGAGGATATACAACACTTTCTGCAGGATG +AATCAGCATATGTTGGTGATTTATTGATTCAGACAGAAGACATTGAGGTTAAAAAGATAC +GTGGGGTGACAAGAGTATTAGAGCCAGTCAAGCTATTAAAAAGCTGGGTTTCTAAAGGCC +TTGCTATAGACAAAGTATACAATCCTATCGGGATAATCTTAATGGCAAGATACATGTCAA +AAACATACAATTTCAGTTCAACACCTCTTGCACTATTAAATCCATATGACTTGACAGAAC +TTGAAAGTGTTGTAAAGGGATGGGGAGAAACTGTAAATGATCGATTCAAAGATTTAGATA +TTGAGGCACAAACAGTTGTTAAAGAAAAGGGTGTACAGCCAGAAGATGTACTCCCTGATT +CATTATTCTCTTTCAGGCATGTTGATGTTTTGCTGCGAAGGTTGTTCCCGCGTGACCCTG +TATCAACATTCTATTAGTGGATTTTATACCTTATTCATACAGTATGTATATTGTAGTGTT +CTTTTCCCGGAGCATACTACTA diff --git a/data_output/nextstrain/orthohantavirus/andv/l/unreleased/sequences.fasta b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/sequences.fasta new file mode 100644 index 000000000..e6b84a36f --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/sequences.fasta @@ -0,0 +1,1102 @@ +>AF291704 +TAGTAGTAGACTCCGGGATAGAAAAAGTTAGAAAAATGGAAAAGTATAGAGAGATTCATC +AGAGAGTTAGGGACCTTGCACCTGGAACGGTATCAGCATTAGAATGCATAGATCTACTGG +ATAGGCTCTACGCTGTCAGACATGACCTGGTTGACCAGATGATAAAACATGACTGGTCTG +ATAATAAAGATGTAGAAAGACCTATAGGTCAAGTTTTACTGATGGCTGGCATACCTAATG +ATATTATACAAGGCATGGAGAAGAAGATTATACCAAATAGCCCTTCTGGACAAGTATTGA +AAAGCTTTTTCCGAATGACACCAGATAATTATAAAATTACAGGTAACTTGATTGAGTTTA +TTGAAGTGACTGTAACAGCTGATGTGTCACGAGGTATTAGGGAGAAGAAAATAAAGTATG +AAGGAGGCCTCCAATTTGTTGAGCACTTACTGGAAACTGAATCAAGGAAGGGTAATATAC +CGCAACCTTATAAAATAACATTCTCAGTGGTTGCAGTTAAAACAGATGGATCAAACATCT +CGACTCAGTGGCCCAGTCGGAGGAACGATGGGGTAGTTCAGCACATGCGTCTAGTCCAAG +CTGATATAAATTATGTCAGAGAGCATTTAATAAAGTTAGATGAGAGAGCATCTTTGGAGG +CAATGTTTAACTTAAAGTTCCATGTATCAGGCCCTAAACTGAGATACTTTAACATCCCTG +ATTATAGACCACAGCAGCTATGTGAACCACGGATTGACAACTTAATACAATATTGCAAGA +ATTGGTTGACAAAAGAACATAAGTTTGTATTCAAAGAAGTCAGTGGAGCTAATGTGATTC +AAGCATTTGAGAGTCATGAACAGTTACATTTACAGAAATACAACGAATCACGAAAACCAA +GAAATTTTTTACTCTTGCAGCTTACAGTGCAAGGGGCATATCTACCATCAACAATCAGTT +CTGACCAGTGCAATACTAGGATTGGGTGTCTAGAAATATCAAAAAACCAACCAGAAACAC +CAGTACAGATGCTTGCATTGGATATATCTTATAAGTATCTGAGTCTTACAAGGGATGAGT +TGATCAATTATTATAGCCCTAGAGTGCACTTTCAATCGAGCCCTAATGTGAAGGAACCAG +GGACACTGAAGTTAGGATTATCACAATTAAATCCACTCTCTAAATCAATTCTTGACAATG +TTGGAAAGCATAAAAAGGATAAAGGATTATTTGGTGAGATCATAGATAGCATAAATGTGG +CAAGTCAAATACAGATCAATGCATGTGCAAAAATAATTGAGCAGATCTTATCAAATCTTG +AAATAAACATTGGAGAAATAAATGCTAGTATGCCTTCTCCTAATAAGACAACAGGTGTAG +ATGACCTGTTAAATAAATTTTATGATAATGAGCTTGGTAAATATATGTTATCCATTCTGA +GGAAAACAGCAGCATGGCATATAGGCCATCTAGTCAGAGATATCACAGAAAGTTTAATTG +CACATGCTGGGCTGCGCCGTTCTAAATATTGGTCAGTACATGCATATGACCATGGGAATG +TAATTTTGTTTATCTTGCCATCAAAGTCACTAGAGGTAGTAGGTTCTTATATAAGGTATT +TCACAGTATTTAAAGATGGTATAGGGTTGATAGACGCAGATAATATTGATTCTAAGGCCG +AAATTGATGGTGTCACCTGGTGTTATTCTAAGGTCATGAGTATTGATTTAAACAGGTTAT +TGGCTTTGAACATAGCTTTTGAGAAGTCACTTCTTGCCACGGCTACATGGTTCCAATATT +ATACTGAAGACCAAGGCCATTTTCCCCTTCAACATGCATTAAGGTCAATCTTTTCTTTCC +ACTTTTTACTCTGTGTGTCACAAAAGATGAAGCTATGTGCAATATTTGATAACCTTCGTT +ATCTGATACCATCAGTAACATCTTTGTACTCTGGGTACGAGTTGTTAATAGAAAAATTCT +TTGAGAGACCATTTAAGAGTTCACTGGATGTATACCTTTATTCTATCATAAAATCTCTAT +TAATTAGTTTGGCACAAAATAATAAAGTTCGATTTTACTCAAGAGTTCGTTTGTTAGGAT +TGACAGTTGATCACTCCACGGTCGGAGCAAGTGGTGTTTACCCCTCTTTAATGTCCCGTG +TTGTTTACAAACATTACAGAAGTTTAATCTCTGAAGCTACAACTTGTTTTTTCTTATTTG +AAAAGGGTTTGCATGGGAATTTACCAGAAGAGGCTAAAATACATCTTGAAACCATTGAAT +GGGCTCGGAAGTTCCAGGAGAAAGAAAAACAATATGGTGATATTCTTCTAAAGGAAGGCT +ATACAATTGAATCTGTAATCAATGGAGAAGTTGATGTAGAACAACAGCTTTTTTGTCAGG +AGGTCTCAGAGCTAAGTGCACAAGAGCTCAACAAATATTTACAGGCAAAATCTCAAGTTT +TATGTGCTAATATCATGAATAAACACTGGGACAAACCATATTTCAGTCAAACACGCAATA +TCAGTCTCAAGGGAATGTCTGGGGCATTGCAAGAGGATGGACATTTAGCTGCTAGTGTGA +CACTGATTGAAGCAATTAGGTTTTTAAATAGATCACAAACCAATCCAAATGTTATTGATA +TGTATGAGCAGACTAAACAATCAAAGGCACAAGCTAGGATTGTTAGGAAATACCAGAGAA +CAGAAGCAGATAGAGGATTTTTTATCACAACATTACCAACTAGGGTGCGATTAGAAATAA +TAGAAGATTATTTCGATGCAATTGCAAAGGTTGTGCCTGAAGAATATATTTCTTATGGTG +GGGATAAAAAAGTTCTAAATATTCAGAATGCACTAGAGAAAGCACTTAGATGGGCATCTG +GAGTATCAGAAATTACAACAAGCACTGGTAAAAGCATCAAGTTTAAGCGGAAATTAATGT +ATGTTAGTGCTGATGCCACAAAATGGTCACCAGGAGATAATTCTGCTAAGTTTAGGAGAT +TTACACAAGCAATATATGATGGCTTATCAGACAACAAACTGAAATGTTGTGTTGTTGATG +CATTACGTAACATTTATGAGACTGAATTTTTTATGTCCAGGAAATTACACCGATATATTG +ATAGTATGGAAAATCATTCAGATGCGGTTGAAGATTTCTTGGCATTTTTCTCAAATGGAG +TCTCAGCCAATGTAAAGGGAAACTGGCTTCAAGGGAACTTAAATAAATGCTCATCATTAT +TTGGTGCTGCTGTCTCATTACTTTTTCGGGAGGTCTGGAAACAATTGTTTCCAGAATTAG +AGTGTTTTTTTGAATTTGCACATCATTCAGATGATGCATTGTTCATTTATGGCTATCTGG +AGCCTGAAGATGATGGAACAGATTGGTTTTTGTATGTATCACAGCAGATACAGGCAGGAA +ACTTTCATTGGCATGCTATAAATCAAGAGATGTGGAAGAGCATGTTTAATCTACATGAGC +ACTTACTATTAATGGGTTCTATTAAAGTGTCACCTAAGAAGACAACAGTATCACCTACTA +ATGCAGAATTTCTTTCTACTTTTTTTGAAGGTTGTGCTGTGTCAATCCCTTTTGTTAAAA +TCTTACTGGGTTCATTATCAGATCTTCCTGGGTTAGGTTTCTTTGATGATTTAGCAGCAG +CACAAAGCAGATGTGTAAAGTCACTAGATTTGGGTGCTTGCCCACAATTAGCTCAACTAG +CTATAGTATTATGCACAAGCAAAGTTGAGAGGTTGTATGGTACTGCTGATGGAATGGTAA +ACTCTCCAACAGCATTCCTTAAGGTGAATAAAGCACACGTACCAGTACCACTTGGTGGTG +ATGGCTCAATGTCTATTATGGAGCTTGCAACAGCTGGTTTTGGGATGGCAGATAAGAATA +TTTTAAAAAATGCATTCATATCTTATAAGCATACTCGTAGAGATGGTGATAGGTACGTAT +TGGGTTTATTTAAATTTTTGATGTCATTAAGTGAGGATGTATTCCAGCACGACCGATTGG +GTGAGTTTAGTTTTGTAGGTAAAGTTCAATGGAAAGTGTTCACTCCTAAAGCTGAATTTG +AATTTCATGATCAATTTTCACATAATTATTTATTAGAGTGGACACGTCAACATCCTGTGT +ATGACTATATTATTCCTAGAAATAGAGATAATTTGCTTGTATACCTTGTAAGAAAGTTGA +ATGATCCTAGCATCATTACAGCTATGACTATGCAGTCACCATTACAACTTCGTTTCCGTA +TGCAAGCAAAGCAACATATGAAAGTATGCCGGTATGAAGGTGAATGGGTCACATTCAGGG +AGGTACTTGCTGCAGCTGATAGTTTTGCTACGAGTTACCAACCTACTGAAAGGGACATGG +ATCTCTTTAATACACTTGTAAGTTGTACATTTTCTAAAGAGTATGCTTGGAAAGACTTTT +TAAATGAAGTAAGGTGTGAGGTCTTAACAACAAGACATGTACATAGGCCTAAAATTGCTA +GGACATTCACTGTTAGAGAAAAGGACCAGGCTATACAAAATCCAATAAATTCGGTGATTG +GCTATAAGTATGCTCTTACAGTGGATGAAGTCAGTGATGTTCTTGATAGTGCATTCTTCC +CAGAGTCTCTATCTGCAGACTTACAGGTTATGAAAGATGGAGTTTACAGAGAATTAGGAC +TTGATATAAGTTCTCCTGAAGTCCTAAAACGCATAGCACCACTATTATATAAGGCAGGAA +GGTCACGTGTTGTTATTGTGGAAGGAAATGTAGAAGGGACAGCTGAGTCAATCTGTAGTT +ATTGGCTCAAGACAATGTCACTGATTAAAACAATCAGAGTAAGACCTAAGAAGGAGGTAC +TGAAAGCTATGTCTTTATATAGTGTTAAAGAAAATATTGGATTGCAGGATGATATTGCAG +CAACTCGACTATGCATAGAAATCTGGAGATGGTGTAAGGCAAATGAACAGGATGTTAAAG +AATGGCTAACATCTCTGTACTTTGAAAAACAGACATTGATGGATTGGGTAGAAAGGTTTA +GAAGGAAAGGAGTTGTTCCTATTGATCCTGAAATACAATGTATTGGCCTACTCTTATATG +ATGTATTAGGTTATAAAAGTGTGTTACAAATGCAAGCAAACCGAAGAGCCTATTCAGGTA +AGCAATATGATGCATACTGTGTGCAAACATATAACGAGGAAACAAAACTATATGAAGGTG +ACCTTCGTGTTACTTTTAATTTTGGTTTAGATTGTGCAAGGTTAGAAGTTTTTTGGGATA +AAAAAGAGTATATCTTAGAGACATCTATCACCCAACGACATGTGTTGCGGTTACTGATGG +AAGAAGTGTCACAAGAATTAATTAGATGTGGAATGAGATTCAAAACAGAGCAAGTCAATC +AAACTCGGAGCTTAGTGTTATTCAAAACAGAGGCTGGTTTTGAATGGGGTAAGCCTAATG +TGCCATGTATTGTATATAAACACTGTGTCTTGAGAACTGGGCTTCGTACGAAACAGCCAA +TTAATAAAGAGTTCATGATAAATGTACAAAGTGATGGTTTCCGTGCAATAGCACAGATGG +ATATTGAGAGTCCACGGTTCTTGTTAGCACATGCATATCATACACTGCGTGATATTAGAT +ATCAAGCAGTGCAGGCAGTAGGGAATGTATGGTTTAAAACAGAACAGCACAAACTATTTA +TTAACCCAATTATATCATCAGGGCTTTTAGAAAACTTTATGAAAGGCTTACCTGCTGCCA +TACCTCCTGCTGCATATTCCCTCATAATGAACAAGGCTAAGATTTCTGTGGATTTGTTTA +TGTTCAATGAGCTATTAGCACTTATAAATAGGAATAATATCCTCAACCTTGATGGGATTG +AAGAAACATCTGAAGGTTATAGTACTGTGACATCAATGTCTAGCAAGCAGTGGTCTGAAG +AGATGAGTTTAATGTCTGATGATGATATTGATGATATGGAGGACTTTACTATAGCACTGG +ATGATATTGACTTTGAACAAATAAATTTGGAAGAGGATATACAACACTTTCTGCAGGATG +AATCAGCATATGTTGGTGATTTATTGATTCAGACAGAAGACATTGAGGTTAAAAAGATAC +GTGGGGTGACAAGAGTATTAGAGCCAGTCAAGCTATTAAAAAGCTGGGTTTCTAAAGGCC +TTGCTATAGACAAAGTATACAATCCTATCGGGATAATCTTAATGGCAAGATACATGTCAA +AAACATACAATTTCAGTTCAACACCTCTTGCACTATTAAATCCATATGACTTGACAGAAC +TTGAAAGTGTTGTAAAGGGATGGGGAGAAACTGTAAATGATCGATTCAAAGATTTAGATA +TTGAGGCACAAACAGTTGTTAAAGAAAAGGGTGTACAGCCAGAAGATGTACTCCCTGATT +CATTATTCTCTTTCAGGCATGTTGATGTTTTGCTGCGAAGGTTGTTCCCGCGTGACCCTG +TATCAACATTCTATTAGTGGATTTTATACCTTATTCATACAGTATGTATATTGTAGTGTT +CTTTTCCCGGAGCATACTACTA +>FV536444 +TAGTAGTATGTTTTGGGAAAAGAATATTATAATATATATATTGTATGAATAAGGTATAAA +ATTTATTAATAGAATGTTGATATAGGGTTATGTGGGAATAATTTTTGTAGTAAAATATTA +ATATGTTTGAAAGAGAATAATGAATTAGGGAGTATATTTTTTGGTTGTATATTTTTTTTT +TTAATAATTGTTTGTGTTTTAATATTTAAATTTTTGAATTGATTATTTATAGTTTTTTTT +TATTTTTTTATAATATTTTTAAGTTTTGTTAAGTTATATGGATTTAATAGTGTAAGAGGT +GTTGAATTGAAATTGTATGTTTTTGATATGTATTTTGTTATTAAGATTATTTTGATAGGA +TTGTATATTTTGTTTATAGTAAGGTTTTTAGAAATTTAGTTTTTTAATAGTTTGATTGGT +TTTAATATTTTTGTTATTTTATGTATTTTTTTAATTTTAATGTTTTTTGTTTGAATTAAT +AAATTATTAATATATGTTGATTTATTTTGTAGAAAGTGTTGTATATTTTTTTTTAAATTT +ATTTGTTTAAAGTTAATATTATTTAGTGTTATAGTAAAGTTTTTTATATTATTAATATTA +TTATTAGATATTAAATTTATTTTTTTAGATTATTGTTTGTTAGATATTGATGTTATAGTA +TTATAATTTTTAGATGTTTTTTTAATTTTATTAAGGTTGAGGATATTATTTTTATTTATA +AGTGTTAATAGTTTATTGAATATAAATAAATTTATAGAAATTTTAGTTTTGTTTATTATG +AGGGAATATGTAGTAGGAGGTATGGTAGTAGGTAAGTTTTTTATAAAGTTTTTTAAAAGT +TTTGATGATATAATTGGGTTAATAAATAGTTTGTGTTGTTTTGTTTTAAATTATATATTT +TTTATTGTTTGTATTGTTTGATATTTAATATTATGTAGTGTATGATATGTATGTGTTAAT +AAGAATTGTGGATTTTTAATATTTATTTGTGTTATTGTATGGAAATTATTATTTTGTATA +TTTATTATGAATTTTTTATTAATTGGTTGTTTTGTATGAAGTTTAGTTTTTAAGATATAG +TGTTTATATATAATATATGGTATATTAGGTTTATTTTATTTAAAATTAGTTTTTGTTTTG +AATAATATTAAGTTTTGAGTTTGATTGATTTGTTTTGTTTTGAATTTTATTTTATATTTA +ATTAATTTTTGTGATATTTTTTTTATTAGTAATTGTAATATATGTTGTTGGGTGATAGAT +GTTTTTAAGATATATTTTTTTTTATTTTAAAAAATTTTTAATTTTGTATAATTTAAATTA +AAATTAAAAGTAATATGAAGGTTATTTTTATATAGTTTTGTTTTTTTGTTATATGTTTGT +ATATAGTATGTATTATATTGTTTATTTGAATAGGTTTTTTGGTTTGTTTGTATTTGTAAT +ATATTTTTATAATTTAATATATTATATAAGAGTAGGTTAATATATTGTATTTTAGGATTA +ATAGGAATAATTTTTTTTTTTTTAAATTTTTTTATTTAATTTATTAATGTTTGTTTTTTA +AAGTATAGAGATGTTAGTTATTTTTTAATATTTTGTTTATTTGTTTTATATTATTTTTAG +ATTTTTATGTATAGTTGAGTTGTTGTAATATTATTTTGTAATTTAATATTTTTTTTAATA +TTATATAAAGATATAGTTTTTAGTATTTTTTTTTTAGGTTTTATTTTGATTGTTTTAATT +AGTGATATTGTTTTGAGTTAATAATTATAGATTGATTTAGTTGTTTTTTTTATATTTTTT +TTTATAATAATAATATGTGATTTTTTTGTTTTATATAATAGTGGTGTTATGTGTTTTAGG +ATTTTAGGAGAATTTATATTAAGTTTTAATTTTTTGTAAATTTTATTTTTTATAATTTGT +AAGTTTGTAGATAGAGATTTTGGGAAGAATGTATTATTAAGAATATTATTGATTTTATTT +ATTGTAAGAGTATATTTATAGTTAATTATTGAATTTATTGGATTTTGTATAGTTTGGTTT +TTTTTTTTAATAGTGAATGTTTTAGTAATTTTAGGTTTATGTATATGTTTTGTTGTTAAG +ATTTTATATTTTATTTTATTTAAAAAGTTTTTTTAAGTATATTTTTTAGAAAATGTATAA +TTTATAAGTGTATTAAAGAGATTTATGTTTTTTTTAGTAGGTTGGTAATTTGTAGTAAAA +TTATTAGTTGTAGTAAGTATTTTTTTGAATGTGATTTATTTATTTTTATATTGGTATATT +TTTATATGTTGTTTTGTTTGTATATGGAAATGAAGTTGTAATGGTGATTGTATAGTTATA +GTTGTAATGATGTTAGGATTATTTAATTTTTTTATAAGGTATATAAGTAAATTATTTTTA +TTTTTAGGAATAATATAGTTATATATAGGATGTTGATGTGTTTATTTTAATAAATAATTA +TGTGAAAATTGATTATGAAATTTAAATTTAGTTTTAGGAGTGAATATTTTTTATTGAATT +TTATTTATAAAATTAAATTTATTTAATTGGTTGTGTTGGAATATATTTTTATTTAATGAT +ATTAAAAATTTAAATAAATTTAATATGTATTTATTATTATTTTTATGAGTATGTTTATAA +GATATGAATGTATTTTTTAAAATATTTTTATTTGTTATTTTAAAATTAGTTGTTGTAAGT +TTTATAATAGATATTGAGTTATTATTATTAAGTGGTATTGGTATGTGTGTTTTATTTATT +TTAAGGAATGTTGTTGGAGAGTTTATTATTTTATTAGTAGTATTATATAATTTTTTAATT +TTGTTTGTGTATAATATTATAGTTAGTTGAGTTAATTGTGGGTAAGTATTTAAATTTAGT +GATTTTATATATTTGTTTTGTGTTGTTGTTAAATTATTAAAGAAATTTAATTTAGGAAGA +TTTGATAATGAATTTAGTAAGATTTTAATAAAAGGGATTGATATAGTATAATTTTTAAAA +AAAGTAGAAAGAAATTTTGTATTAGTAGGTGATATTGTTGTTTTTTTAGGTGATATTTTA +ATAGAATTTATTAATAGTAAGTGTTTATGTAGATTAAATATGTTTTTTTATATTTTTTGA +TTTATAGTATGTTAATGAAAGTTTTTTGTTTGTATTTGTTGTGATATATATAAAAATTAA +TTTGTTTTATTATTTTTAGGTTTTAGATAGTTATAAATGAATAATGTATTATTTGAATGA +TGTGTAAATTTAAAAAAATATTTTAATTTTGGAAATAATTGTTTTTAGATTTTTTGAAAA +AGTAATGAGATAGTAGTATTAAATAATGATGAGTATTTATTTAAGTTTTTTTGAAGTTAG +TTTTTTTTTATATTGGTTGAGATTTTATTTGAGAAAAATGTTAAGAAATTTTTAATTGTA +TTTGAATGATTTTTTATATTATTAATATATTGGTGTAATTTTTTGGATATAAAAAATTTA +GTTTTATAAATGTTATGTAATGTATTAATAATATAATATTTTAGTTTGTTGTTTGATAAG +TTATTATATATTGTTTGTGTAAATTTTTTAAATTTAGTAGAATTATTTTTTGGTGATTAT +TTTGTGGTATTAGTATTAATATATATTAATTTTTGTTTAAATTTGATGTTTTTATTAGTG +TTTGTTGTAATTTTTGATATTTTAGATGTTTATTTAAGTGTTTTTTTTAGTGTATTTTGA +ATATTTAGAATTTTTTTATTTTTATTATAAGAAATATATTTTTTAGGTATAATTTTTGTA +ATTGTATTGAAATAATTTTTTATTATTTTTAATTGTATTTTAGTTGGTAATGTTGTGATA +AAAAATTTTTTATTTGTTTTTGTTTTTTGGTATTTTTTAATAATTTTAGTTTGTGTTTTT +GATTGTTTAGTTTGTTTATATATATTAATAATATTTGGATTGGTTTGTGATTTATTTAAA +AATTTAATTGTTTTAATTAGTGTTATATTAGTAGTTAAATGTTTATTTTTTTGTAATGTT +TTAGATATTTTTTTGAGATTGATATTGTGTGTTTGATTGAAATATGGTTTGTTTTAGTGT +TTATTTATGATATTAGTATATAAAATTTGAGATTTTGTTTGTAAATATTTGTTGAGTTTT +TGTGTATTTAGTTTTGAGATTTTTTGATAAAAAAGTTGTTGTTTTATATTAATTTTTTTA +TTGATTATAGATTTAATTGTATAGTTTTTTTTTAGAAGAATATTATTATATTGTTTTTTT +TTTTTTTGGAATTTTTGAGTTTATTTAATGGTTTTAAGATGTATTTTAGTTTTTTTTGGT +AAATTTTTATGTAAATTTTTTTTAAATAAGAAAAAATAAGTTGTAGTTTTAGAGATTAAA +TTTTTGTAATGTTTGTAAATAATATGGGATATTAAAGAGGGGTAAATATTATTTGTTTTG +ATTGTGGAGTGATTAATTGTTAATTTTAATAAATGAATTTTTGAGTAAAATTGAATTTTA +TTATTTTGTGTTAAATTAATTAATAGAGATTTTATGATAGAATAAAGGTATATATTTAGT +GAATTTTTAAATGGTTTTTTAAAGAATTTTTTTATTAATAATTTGTATTTAGAGTATAAA +GATGTTATTGATGGTATTAGATAATGAAGGTTATTAAATATTGTATATAGTTTTATTTTT +TGTGATATATAGAGTAAAAAGTGGAAAGAAAAGATTGATTTTAATGTATGTTGAAGGGGA +AAATGGTTTTGGTTTTTAGTATAATATTGGAATTATGTAGTTGTGGTAAGAAGTGATTTT +TTAAAAGTTATGTTTAAAGTTAATAATTTGTTTAAATTAATATTTATGATTTTAGAATAA +TATTAGGTGATATTATTAATTTTGGTTTTAGAATTAATATTATTTGTGTTTATTAATTTT +ATATTATTTTTAAATATTGTGAAATATTTTATATAAGAATTTATTATTTTTAGTGATTTT +GATGGTAAGATAAATAAAATTATATTTTTATGGTTATATGTATGTATTGATTAATATTTA +GAATGGTGTAGTTTAGTATGTGTAATTAAATTTTTTGTGATATTTTTGATTAGATGGTTT +ATATGTTATGTTGTTGTTTTTTTTAGAATGGATAATATATATTTATTAAGTTTATTATTA +TAAAATTTATTTAATAGGTTATTTATATTTGTTGTTTTATTAGGAGAAGGTATATTAGTA +TTTATTTTTTTAATGTTTATTTTAAGATTTGATAAGATTTGTTTAATTATTTTTGTATAT +GTATTGATTTGTATTTGATTTGTTATATTTATGTTATTTATGATTTTATTAAATAATTTT +TTATTTTTTTTATGTTTTTTAATATTGTTAAGAATTGATTTAGAGAGTGGATTTAATTGT +GATAATTTTAATTTTAGTGTTTTTGGTTTTTTTATATTAGGGTTTGATTGAAAGTGTATT +TTAGGGTTATAATAATTGATTAATTTATTTTTTGTAAGATTTAGATATTTATAAGATATA +TTTAATGTAAGTATTTGTATTGGTGTTTTTGGTTGGTTTTTTGATATTTTTAGATATTTA +ATTTTAGTATTGTATTGGTTAGAATTGATTGTTGATGGTAGATATGTTTTTTGTATTGTA +AGTTGTAAGAGTAAAAAATTTTTTGGTTTTTGTGATTTGTTGTATTTTTGTAAATGTAAT +TGTTTATGATTTTTAAATGTTTGAATTATATTAGTTTTATTGATTTTTTTGAATATAAAT +TTATGTTTTTTTGTTAATTAATTTTTGTAATATTGTATTAAGTTGTTAATTTGTGGTTTA +TATAGTTGTTGTGGTTTATAATTAGGGATGTTAAAGTATTTTAGTTTAGGGTTTGATATA +TGGAATTTTAAGTTAAATATTGTTTTTAAAGATGTTTTTTTATTTAATTTTATTAAATGT +TTTTTGATATAATTTATATTAGTTTGGATTAGATGTATGTGTTGAATTATTTTATTGTTT +TTTTGATTGGGTTATTGAGTTGAGATGTTTGATTTATTTGTTTTAATTGTAATTATTGAG +AATGTTATTTTATAAGGTTGTGGTATATTATTTTTTTTTGATTTAGTTTTTAGTAAGTGT +TTAATAAATTGGAGGTTTTTTTTATATTTTATTTTTTTTTTTTTAATATTTTGTGATATA +TTAGTTGTTATAGTTATTTTAATAAATTTAATTAAGTTATTTGTAATTTTATAATTATTT +GGTGTTATTTGGAAAAAGTTTTTTAATATTTGTTTAGAAGGGTTATTTGGTATAATTTTT +TTTTTTATGTTTTGTATAATATTATTAGGTATGTTAGTTATTAGTAAAATTTGATTTATA +GGTTTTTTTATATTTTTATTATTAGATTAGTTATGTTTTATTATTTGGTTAATTAGGTTA +TGTTTGATAGTGTAGAGTTTATTTAGTAGATTTATGTATTTTAATGTTGATATTGTTTTA +GGTGTAAGGTTTTTAATTTTTTGATGAATTTTTTTATATTTTTTTATTTTTTTAATTTTT +TTTATTTTGGAGTTTATTATTA +>MN258187 +GTAGACTCCGGGATAGAAAAAGTTAGAAAAATGGAAAAGTACAGAGAAATTCATCAGAGA +GTTAGGGATCTTGCACCTGGGACAGTATCAGCATTAGAATGCATAGATCTACTGGATAGG +CTCTATGCTGTCAGACACGATTTAGTTGATCAGATGATAAAACATGACTGGTCTGACAAT +AAAGATGTAGAAAGGCCTATAGGTCAAGTTTTGCTGATGGCTGGCATACCTAATGATATT +ATACAAGGCATGGAGAAGAAGATTATACCAAATAGCCCTTCTGGACAAGTGCTGAAGAGC +TTTTTCCGAATGACACCAGACAATTATAAAATCACCGGCAATTTGATTGAGTTTATTGAA +GTGACTGTAACAGCTGATGTATCACGAGGTATTAGGGAGAAGAAAATAAAGTATGAAGGT +GGCCTTCAATTTGTTGAGCACTTACTTGAGGTTGAATCAAGGAAGGGTAACATACCGCAA +CCCTATAAAATAACATTCTCAGTAGTGGCAGTTAAAACAGATGGATCAAACATCTCAACT +CAATGGCCTAGTCGAAGGAACGATGGGGTAGTTCAGCACATGCGTCTAGTCCAAGCTGAT +ATTAATTATGTCAGAGAGCACTTAATAAAGTTAGATGAGAGAGCATCACTGGAAGCAATG +TTCAACTTAAAATTCCATGTGTCAGGCCCTAAATTGAGATACTTCAACATCCCTGATTAT +AGACCACAGCAGCTATGTGAACCACGGATTGATAACTTAATACAATATTGCAAGAATTGG +TTGACAAAAGAACATAAGTTTGTATTCAAGGAAGTCAGTGGAGCTAATGTGATTCAAGCA +TTTGAGAGTCATGAGCAGTCACACTTACAGAAATACAATGAATCACGGAAACCGAGAAAT +TTTTTACTCTTGCAGCTTACAGTGCAAGGGGCATATCTGCCATCGACAATCAGCTCTGAC +CAGTGCAATACTAGGATTGGGTGTCTAGAAATATCCAAAAACCAACCAGAGACACCAGTA +CAGATGCTTGCATTAGATATAGCTTATAAGTATCTGAGCCTTACAAAGGATGAGTTAATT +AACTATTATAGTCCTAGAGTGCACTTTCAATCAAGCCCCAGTGTAAAGGAACCGGGGACA +TTAAAGTTAGGATTATCACAATTAAATCCACTGTCTAAATCAATCCTTGACAATGTTGGA +AAGCATAAAAAGGATAAGGGATTGTTTGGTGAGATTATAGATAGTATAAATGTAGCAAGT +CAAATACAGATCAATGCATGTGCAAAAATAATTGAGCAGATCTTATCTAATCTTGAAATA +AACATTGGAGAAATAAATGCTAGTATGCCTTCCCCTAATAAGACAACAGGCGTAGATGAC +TTGTTGAATAAATTTTATGATAATGAGCTTGGGAAATATATGTTATCCATTCTGAGGAAA +ACAGCAGCATGGCATATAGGCCATTTAGTCAGAGATATCACAGAAAGTTTAATTGCACAT +GCCGGTCTGCGTCGTTCTAAATACTGGTCAGTGCATGCATATGACCATGGGAATGTAATT +TTGTTTATTTTGCCATCAAAGTCATTGGAAGTAGTAGGTTCTTATATAAGGTATTTCACA +GTATTCAAGGACGGTATAGGATTGATTGATGCGGACAATATTGATTCTAAAGCTGAAATT +GATGGTGTTACTTGGTGTTATTCTAAAGTCATGAGTATCGATTTAAACAGGCTATTAGCC +TTGAATATAGCCTTTGAGAAGTCACTTCTTGCCACAGCAACATGGTTCCAATATTATACT +GAAGACCAAGGCCATTTTCCCCTTCAACATGCATTAAGGTCAATCTTTTCTTTTCACTTT +TTACTATGTGTGTCACAGAAGATGAAACTATGCGCAATATTTGATAACCTTCGTTATCTG +ATACCATCAGTAACATCTTTGTATTCTGGGTATGAATTGCTAATAGAAAAATTCTTTGAG +AGGCCATTTAAGAGTTCACTGGATGTATACCTTTATTCTATTATAAAGTCTCTGTTAATT +AGTTTGGCACAAAATAATAAAGTTCGATTTTACTCAAGAGTTCGCTTGTTAGGATTGACA +GTTGATCATTCTACGGTTGGAGCAAGTGGTGTTTATCCCTCTTTAATGTCCCGTGTTGTC +TATAAACACTACAGAAGTCTAATCTCTGAAGCTACAACCTGTTTTTTCTTATTTGAAAAG +GGTTTGCATGGGAATCTACCAGAAGAGGCCAAAATACATCTTGAAACCATTGAATGGGCT +CGAAAGTTTCAGGAGAAAGAGAAACAATACGGTGATATTCTTCTAAAGGAAGGCTATACA +ATTGAATCTGTAATCAATGGAGAAGTTAATGTAGAACAACAGCTCTTTTGTCAAGAGGTT +TCAGAGCTAAGTGCACAAGAACTTAACAAATATCTACAAGCAAAATCTCAAGTTTTATGT +GCCAATATCATGAATAAGCACTGGGATAAACCATACTTTAGTCAAACACGCAATATCAGC +CTTAAGGGAATGTCCGGTGCATTGCAAGAAGATGGGCATTTAGCTGCTAGTGTAACACTA +ATTGAAGCAATTAGATTTTTAAATAGATCACAGACTAATCCAAATGTTATTGATATGTAT +GAGCAAACTAAACAAGCAAAGGCACAAGCTAGGATTGTCAGGAAATACCAGAGAACAGAA +GCAGATAGAGGATTTTTTATTACAACATTACCAACTAGGGTGCGACTGGAGATAATAGAA +GATTATTTCGATGCAATTGCAAAGGTTGTGCCTGAAGAATACATTTCTTATGGTGGGGAT +AAAAAGGTTCTAAATATTCAGAATGCACTAGAGAAAGCACTTAGATGGGCATCTGGGGTA +TCAGAAATTACAACAAGTACTGGTAAAAGCATCAAGTTTAAGCGGAAATTAATGTATGTT +AGTGCTGATGCAACAAAATGGTCACCAGGAGACAATTCTGCCAAATTCAGGAGATTTACA +CAAGCAATATATGATGGTTTATCAGACAACAAGTTAAAATGTTGTGTTGTTGATGCATTA +CGCAATATTTATGAGACTGAATTCTTTATGTCTAGAAAATTACACCGATATATTGATAGT +ATGGAAGATCATTCAGATGCAGTTGAAGACTTCTTGGCGTTTTTTTCAAATGGAGTCTCA +GCCAATGTGAAGGGAAATTGGCTTCAAGGGAATTTAAATAAATGCTCATCGTTATTTGGT +GCTGCTGTCTCATTACTTTTTCGGGAGGTCTGGAAACAATTATTTCCAGAATTAGAGTGC +TTTTTTGAATTTGCACATCATTCAGATGATGCATTATTTATTTATGGCTATCTAGAGCCT +GAAGATGATGGAACAGATTGGTTTTTGTATGTATCACAGCAGATACAAGCAGGAAACTTT +CATTGGCATGCTATAAATCAAGAGATGTGGAAGAGTATGTTTAATCTACATGAACATTTA +CTATTAATGGGCTCCATTAAAGTGTCACCTAAGAAGACAACAGTGTCACCCACTAATGCA +GAATTTCTTTCTACTTTCTTTGAAGGTTGTGCTGTGTCAATTCCCTTTGTTAAAATATTA +CTAGGCTCATTATCAGATCTTCCTGGGTTAGGTTTCTTTGATGATTTGGCAGCAGCACAG +AGCAGATGTGTAAAGTCATTGGATTTAGGTGCTTGCCCACAGTTAGCTCAACTAGCTATA +GTGTTATGCACAAGCAAAGTTGAGAGGTTGTATGGTACTGCTGATGGAATGGTGAACTCT +CCAACAGCATTCCTTAAGGTAAATAAAGCACATGTACCAGTACCACTTGGTGGTGATGGC +TCGATGTCTATTATGGAACTTGCAACAGCTGGTTTTGGAATGGCAGATAAGAATATTTTA +AAAAATGCATTCATATCTTATAAGCATACTCGTAGAGAAGGTGATAGATATGTCTTGGGT +TTATTTAAATTTTTGATGTCATTAAGTGAGGATGTATTCCAGCATGACCGATTAGGTGAG +TTTAGTTTTGTAGGTAAAGTTCAATGGAAGGTGTTTACTCCTAAAGCTGAATTTGAATTT +CATGATCAATTTTCGCATAATTATTTATTAGAATGGACACGTCAACATCCTGTGTATGAC +TATATTATTCCTAGAAATAGGGATAACTTGCTTGTATACCTTGTGAGAAAGTTGAATGAT +CCTAGCATCATCACAGCTATGACTATGCAGTCACCATTGCAACTCCGTTTTCGTATGCAG +GCGAAACAACATATGAAAGTATGCCGGTATGAAGGTGAATGGGTCACATTCAGGGAGGTA +CTTGCTGCAGCTGATAGTTTTGCCACAAATTACCAGCCTACTGAAAGGGACATGGATCTC +TTTAATACACTTGTAAGTTGTACATTCTCTAAAGAGTATGCTTGGAAAGATTTTTTAAAT +GAAGTAAGGTGTGAGGTCTTAACAACAAGGCATGTACATAGGCCTAAAATTGCTAGGACA +TTCACTGTTAGGGAAAAGGACCAGGCTATACAAAATCCAATAAACTCTGTAATTGGTTAT +AAGTATGCTCTTACAGTAGATGAAGTCAGTGATGTCCTTGATAGTGCATTCTTCCCGGAG +TCTTTATCCGCAGACTTACAGGTTATGAAGGATGGAGTTTACAGAGAATTAGGACTTGAC +ATAAGTTCTCCTGAGGTTTTAAAACGTATAGCACCGCTATTATATAAGGCAGGAAGGTCA +CGTGTTGTTATTGTTGAAGGAAATGTAGAGGGGACAGCTGAGTCAATCTGTAGTTATTGG +CTTAAGACAATGTCACTAATTAAAACAATTAGAGTAAGACCTAAGAAGGAAGTATTGAAA +GCTATGTCTTTATACAGTGTTAAGGAAAATATTGGATTACAGGATGATATTGCAGCAACT +CGACTGTGCATAGAAATCTGGAGGTGGTGTAAGGCAAATGAACAGGATGTCAAGGAATGG +CTAACATCTTTATACTTTGAAAAACAAACATTGATGGATTGGGTAGAAAGGTTTAGAAGG +AAAGGAGTTGTGCCTATTGATCCTGAAATACAGTGTATTGGCCTGCTCTTATATGATGTA +TTAGGTTATAAAAGTGTTTTACAAATGCAAGCAAACCGAAGAGCCTATTCAGGTAAGCAG +TATGATGCATACTGTGTGCAGACGTATAACGAGGAAACAAAACTATATGAAGGTGACCTC +CGTGTTACTTTCAATTTTGGTCTAGATTGTGCAAGGTTAGAAGTTTTTTGGGATAAAAGA +GAATATATCTTAGAGACATCGATCACCCAACGACATGTATTGCGGTTGTTGATGGAAGAA +GTGTCACAAGAATTGATTAGATGTGGAATGAGATTCAAAACAGAACAGGTCAATCAAACT +CGGAGCTTAGTGTTATTCAAAACAGAGGCTGGTTTTGAATGGGGCAAGCCTAATGTACCA +TGTATTGTATATAAACACTGTGTTTTGAGAACTGGACTCCGTACAAAACAGCCAATTAAC +AAAGAGTTCATGATAAATGTACAAAGTGACGGGTTCCGTGCAATAGCACAGATGGATATT +GAAAGTCCACGGTTCTTGTTGGCACATGCATATCATACATTGCGTGATATTAGGTATCAG +GCAGTACAGGCGGTAGGGAATGTATGGTTTAAAACAGAACAGCACAAACTATTCATCAAC +CCAATCATATCATCAGGACTTTTAGAAAACTTTATGAAAGGCTTACCTGCTGCCATACCT +CCTGCTGCATATTCTCTAATAATGAACAAGGCTAAAATTTCTGTGGATTTGTTTATGTTC +AATGAACTATTAGCACTTATAAATAGGAATAATATTCTCAACCTTGATGGGATTGAAGAA +ACATCTGAAGGTTATAGTACTGTGACATCAATGTCTAGCAAGCACTGGTCTGAAGAGATG +AGTTTAATGTCTGATGATGATATAGATGACATGGAGGATTTCACTATAGCGCTAGATGAT +ATTGACTTTGAACAAATAAATTTGGAAGAAGATATACAGCATTTCCTGCAGGATGAATCA +GCATATGTTGGTGATTTATTAATTCAGACAGAGGACATTGAAGTCAAGAAGATACGGGGA +GTGACAAGAGTATTAGAGCCAGTTAAGCTATTAAAAAGTTGGGTTTCTAAAGGTCTTGCT +ATAGATAAAGTATACAATCCTATTGGGATAATCTTAATGGCAAGATACATGTCAAAAACA +TACAATTTCAGTTCAACACCTCTTGCACTATTAAATCCATATGATTTGACAGAACTTGAA +AGTGTTGTAAAAGGATGGGGAGAAACTGTGAATGATCGATTCAAAGATTTAGATGTTGAG +GCACAAACAGTTGTTAAAGAGAAAGGTGTACAACCAGAAGATGTACTCCCTGATTCATTA +TTCTCTTTTAGGCATGTTGATGTTTTGCTACGAAGGTTGTTTCCGCGTGACCCTGTATCA +ACATTCTATTAGTGGATTTTATACCTTGTTCATACAGTATGTATATTGTAGTGTTCTTTT +CCC +>MN850097 +CTCCGGGATAGAAAAAGTTAGAAAAATGGAAAAGTACAGAGAAATTCATCAGAGAGTTAG +GGATCTTGCACCTGGAACGGTATCAGCATTAGAATGCATAGATCTACTGGATAGGCTCTA +TGCTGTCAGACACGATCTAGTTGATCAGATGATAAAACATGACTGGTCTGACAATAAAGA +TGTAGAGAGGCCTATAGGTCAAGTTTTGCTGATGGCTGGCATACCTAATGATATTATACA +AGGCATGGAGAAGAAGATCATACCAAATAGCCCTTCTGGACAAGTGCTGAAGAGCTTTTT +CCGAATGACACCAGACAATTATAAAATCACCGGCAATTTGATTGAGTTTATTGAAGTGAC +TGTAACAGCTGATGTATCACGAGGTATTAGGGAGAAGAAAATAAAGTATGAAGGTGGCCT +TCAATTTGTTGAGCACTTACTTGAGGTTGAATCAAGGAAGGGTAACATACCGCAACCTTA +TAAAATAACATTCTCAGTAGTAGCAGTTAAAACAGATGGATCAAACATCTCAACTCAATG +GCCTAGTCGAAGGAACGATGGGGTAGTTCAGCACATGCGTCTAGTCCAAGCTGATATTAA +TTATGTCAGAGAGCACTTAATAAAGTTAGATGAGAGAGCATCACTGGAAGCAATGTTCAA +CTTAAAATTTCATGTGTCAGGCCCTAAATTGAGATACTTCAATATCCCTGATTATAGACC +ACAGCAGCTATGTGAACCACGGATTGATAACTTAATACAATATTGTAAGAATTGGTTGAC +AAAAGAACATAAGTTTGTATTCAAGGAAGTCAGTGGAGCTAATGTGATTCAAGCATTTGA +GAGTCATGAGCAGTCACACTTACAGAAATACAATGAATCACGGAAACCGAGAAATTTTTT +ACTCTTGCAGCTTACAGTGCAAGGGGCATATCTGCCATCAACTATCAGTTCTGACCAGTG +CAATACTAGGATTGGGTGTCTAGAAATATCAAAGAACCAACCAGAGACACCAGTACAGAT +GCTTGCATTAGATATAGCTTATAAGTATCTGAGCCTTACAAAGGATGAGTTAATTAACTA +TTATAGTCCTAGAGTGCACTTTCAATCAAGCCCCAGTGTAAAGGAACCAGGGACATTAAA +GTTAGGGTTATCACAATTAAATCCACTGTCTAAATCAATCCTTGATAATGTTGGAAAGCA +CAAAAAGGATAAAGGATTGTTTGGTGAGATTATAGATAGTATAAATGTAGCAAGCCAAAT +ACAGATCAATGCATGTGCAAAAATAATTGAGCAGATCTTATCAAATCTTGAAATAAACAT +TGGAGAAATAAATGCTAGTATGCCTTCCCCTAATAAAACAACAGGTGTAGATGACTTGTT +GAATAAATTTTATGATAATGAGCTTGGGAAATATATGTTATCCATTCTGAGGAAAACAGC +AGCATGGCATATAGGCCATCTAGTCAGAGATATCACAGAAAGTTTAATTGCACATGCCGG +TCTGCGTCGTTCTAAATACTGGTCAGTGCATGCATATGACCATGGGAATGTAATTTTGTT +TATTTTGCCATCAAAGTCATTGGAAGTAGTAGGTTCTTATATAAGGTATTTCACAGTATT +CAAGGACGGTATAGGATTGATTGATGTGGACAATATTGATTCTAAAGCTGAAATTGACGG +TGTTACTTGGTGTTATTCTAAAGTCATGAGTATCGATTTAAACAGGCTATTAGCCTTGAA +TATAGCCTTTGAGAAGTCACTTCTTGCCACAGCAACATGGTTCCAATATTATACTGAAGA +CCAAGGCCATTTTCCCCTTCAACATGCATTAAGGTCAATCTTTTCTTTTCACTTTTTACT +ATGTGTGTCACAGAAGATGAAACTATGTGCAATATTTGATAACCTTCGTTATCTGATACC +ATCAGTAACATCTTTGTATTCTGGGTATGAATTGCTAATAGAAAAATTCTTTGAGAGGCC +ATTTAAGAGTTCACTGGATGTATACCTTTATTCTATTATAAAGTCTCTGTTAATTAGTTT +GGCACAAAATAATAAAGTTCGATTTTACTCAAGAGTTCGCTTGTTAGGATTGACAGTTGA +TCATTCTACAGTCGGAGCAAGTGGTGTTTATCCCTCTTTAATGTCCCGTGTTGTCTATAA +ACACTACAGAAGTCTGATCTCTGAAGCTACAACCTGTTTTTTCTTATTTGAAAAGGGTTT +GCATGGGAATCTACCAGAAGAGGCTAAAATACATCTTGAAACCATTGAATGGGCTCGAAA +GTTTCAGGAGAAAGAGAAACACTACGGTGATATTCTTCTAAAGGAAGGCTATACAATTGA +ATCTGTAATCAATGGGGAAGTTAATGTAGAACAACAGCTCTTTTGTCAAGAGGTTTCAGA +GCTAAGTGCACAAGAACTTAACAAATATCTACAAGCAAAATCTCAAGTTTTATGTGCCAA +TATCATGAATAAACACTGGGATAAACCATACTTTAGTCAAACACGCAATATCAGCCTTAA +GGGAATGTCCGGCGCATTGCAAGAAGATGGGCATTTAGCTGCTAGTGTAACACTAATTGA +AGCAATTAGATTTTTAAATAGATCACAGACTAATCCAAATGTTATTGATATGTATGAGCA +AACTAAACAAGCAAAGGCACAAGCTAGGATTGTCAGGAAATACCAGAGAACAGAAGCAGA +TAGAGGATTTTTTATTACAACATTACCAACTAGGGTGCGACTGGAGATAATAGAAGATTA +TTTTGATGCAATTGCAAAGGTTGTGCCTGAAGAATACATTTCTTATGGTGGGGATAAAAA +GGTTCTAAATATTCAAAATGCACTAGAGAAAGCACTTAGATGGGCATCTGGGGTGTCAGA +AATTACAACAAGTACTGGTAAAAGCATCAAGTTTAAGCGGAAATTAATGTATGTTAGTGC +CGATGCAACAAAATGGTCACCAGGAGATAATTCTGCCAAATTCAGGAGATTTACACAAGC +AATATATGATGGTTTATCAGACAACAAGTTAAAATGTTGTGTTGTTGATGCATTACGCAA +TATTTATGAGACTGAATTCTTTATGTCTAGAAAATTATACCGATATATTGATAGTATGGG +AGATCATTCAGATGCAGTTGAAGACTTCTTGGCGTTTTTTTCAAATGGAGTCTCAGCCAA +TGTGAAGGGAAATTGGCTTCAAGGGAATTTAAATAAATGCTCATCGTTATTTGGTGCTGC +TGTCTCATTACTTTTTCGGGAGGTCTGGAAACAATTATTTCCAGAATTAGAGTGCTTTTT +TGAATTTGCACATCATTCAGATGATGCATTATTTATTTATGGCTATCTAGAGCCTGAAGA +TGATGGAACAGATTGGTTTTTGTATGTATCACAGCAGATACAAGCAGGAAACTTTCATTG +GCATGCTATAAATCAAGAGATGTGGAAGAGTATGTTTAATCTACATGAACATTTACTATT +AATGGGCTCAATTAAAGTGTCACCAAAGAAGACAACAGTGTCACCTACTAATGCAGAATT +TCTTTCTACTTTCTTTGAAGGTTGTGCTGTGTCAATTCCCTTTGTTAAAATATTATTAGG +CTCATTATCAGATCTTCCTGGGTTAGGTTTCTTTGATGATTTGGCAGCAGCACAGAGCAG +ATGTGTAAAGTCATTGGATTTAGGTGCTTGCCCACAGTTAGCTCAACTAGCTATAGTGTT +ATGCACAAGCAAAGTTGAGAGGTTGTATGGTACTGCTGATGGAATGGTGAACTCTCCAAC +AGCATTCCTTAAGGTAAATAAAGCACATGTACCAGTACCACTTGGTGGTGATGGCTCGAT +GTCTATTATGGAACTTGCAACAGCTGGTTTTGGAATGGCAGATAAGAATATTTTAAAAAA +TGCATTCATATCTTATAAGCATACTCGTAGGGAAGGTGATAGATATGTCTTGGGTTTGTT +TAAATTTTTGATGTCATTAAGTGAGGATGTATTCCAGCATGACCGATTAGGTGAGTTTAG +TTTTGTAGGTAAAGTTCAATGGAAAGTGTTTACTCCTAAAGCTGAATTTGAATTTCATGA +TCAATTTTCGCATAATTATTTATTAGAATGGACACGTCAACATCCTGTGTATGACTATAT +TATTCCTAGAAATAGGGATAATTTGCTTGTATACCTTGTGAGAAAGTTGAATGATCCTAG +CATCATCACAGCTATGACTATGCAGTCACCATTGCAACTCCGTTTTCGTATGCAGGCGAA +ACAACATATGAAAGTATGCCGGTATGAAGGTGAATGGGTCACATTCAGGGAGGTACTTGC +TGCAGCTGATAGTTTTGCCACAAATTACCAGCCTACTGAAAGGGACATGGATCTCTTTAA +TACACTTGTAAGTTGTACATTCTCTAAAGAGTATGCTTGGAAAGACTTTTTAAATGAAGT +AAGGTGTGAGGTCTTAACAACAAGACATGTACATAGGCCTAAAATTGCTAGGACATTCAC +TGTTAGGGAAAAGGACCAGGCTATACAAAATCCAATAAACTCTGTGATTGGTTATAAGTA +TGCTCTTACAGTAGATGAAGTTAGTGATGTCCTTGATAGTGCATTCTTCCCGGAGTCTTT +ATCCGCAGACTTACAGGTTATGAAGGATGGAGTTTACAGGGAATTAGGACTTGACATAAG +TTCTCCTGAGGTTTTAAAACGTATAGCACCGCTATTATATAAGGCAGGAAGGTCACGTGT +TGTTATCGTTGAAGGAAATGTAGAGGGGACAGCTGAGTCAATCTGTAGTTATTGGCTTAA +GACAATGTCACTAATTAAAACAATTAGAGTAAGACCTAAGAAGGAAGTATTGAAAGCTAT +GTCTTTATACAGTGTTAAGGAAAATATTGGATTACAGGATGATATTGCGGCAACTCGACT +GTGCATAGAAATCTGGAGGTGGTGTAAGGCAAATGAACAGGATGTTAAGGAATGGCTAAC +ATCTTTATACTTTGAAAAACAAACATTAATGGATTGGGTAGAGAGGTTTAGAAGGAAAGG +AGTTGTGCCTATTGATCCTGAAATCCAGTGTATTGGCCTGCTCTTATATGATGTATTAGG +TTATAAAAGTGTTTTACAAATGCAAGCAAACCGAAGAGCTTATTCAGGTAAGCAGTATGA +TGCATACTGTGTGCAGACGTATAACGAGGAAACAAAACTATATGAAGGTGACCTCCGTGT +TACTTTCAATTTTGGTCTAGATTGTGCAAGGTTAGAAGTTTTTTGGGATAAAAGAGAATA +TATCTTAGAGACATCGATCACCCAACGACATGTATTGCGGTTGTTGATGGAAGAAGTGTC +ACAAGAATTGATTAGATGTGGAATGAGATTCAAAACAGAACAGGTCAATCAAACTCGGAG +CTTAGTGTTATTCAAAACAGAGGCTGGTTTTGAATGGGGTAAGCCTAATGTACCATGTAT +TGTATATAAACACTGTGTTTTGAGAACTGGACTCCGTACAAAACAGCCAATTAACAAAGA +GTTCATGATAAATGTACAAAGTGATGGGTTCCGTGCAATAGCACAGATGGATATTGAAAG +TCCACGGTTCTTGTTGGCACATGCATATCATACATTGCGTGATATTAGGTATCAGGCAGT +ACAGGCGGTAGGGAATGTATGGTTTAAAACAGAACAGCACAAACTATTCATCAACCCAAT +CATATCATCAGGACTTTTAGAAAACTTTATGAAAGGCTTACCCGCTGCCATACCTCCTGC +TGCATATTCTCTAATAATGAATAAGGCTAAAATTTCTGTGGATTTGTTTATGTTCAATGA +ACTATTAGCACTTATAAATAGGAATAATATTCTCAACCTTGATGGGATTGAAGAAACATC +TGAAGGTTATAGTACTGTGACATCAATGTCTAGCAAGCACTGGTCTGAAGAGATGAGTTT +AATGTCTGATGATGATATAGATGACATGGAGGATTTCACTATAGCACTAGATGATATTGA +CTTTGAACAAATAAATTTGGAAGAAGATATACAGCATTTCCTGCAGGATGAATCAGCATA +TGTTGGTGATTTATTAATTCAGACAGAGGACATTGAAGTCAAGAAGATACGGGGAGTGAC +AAGAGTATTAGAGCCAGTTAAGCTATTAAAAAGTTGGGTTTCTAAAGGTCTTGCTATAGA +CAAAGTATACAATCCTATTGGGATAATCTTAATGGCAAGATACATGTCAAAAACATACAA +TTTCAGTTCAACACCTCTTGCACTATTAAATCCATATGATTTGACAGAACTTGAAAGTGT +TGTAAAAGGATGGGGAGAAACTGTAAATGATCGATTCAAAGATTTAGATGTTGAGGCACA +AACAGTTGTTAAAGAGAAAGGTGTACAGCCAGAAGATGTACTCCCTGATTCATTATTCTC +TTTTAGGCATGTTGATGTTTTGCTGCGAAGGTTGTTTCCACGTGACCCTGTATCAACATT +CTATTAGTGGATTTTATACCTTGTTCATACAGTATGTATATTGTAGTGTTCT +>MT956621 +TAGTAGTAGACTCCGGGATAGAAAAAGTTAGAAAAATGGAAAAGTATAGAGAGATTCATC +AGAGAGTTAGGGACCTTGCACCTGGAACGGTATCAGCATTAGAATGCATAGATCTACTGG +ATAGGCTCTACGCTGTCAGACATGACCTGGTTGACCAGATGATAAAACATGACTGGTCTG +ATAATAAAGATGTAGAAAGACCTATAGGTCAAGTTTTACTGATGGCTGGCATACCTAATG +ATATTATACAAGGCATGGAGAAGAAGATTATACCAAATAGCCCTTCTGGACAAGTATTGA +AAAGCTTTTTCCGAATGACACCAGATAATTATAAAATTACAGGTAACTTGATTGAGTTTA +TTGAAGTGACTGTAACAGCTGATGTGTCACGAGGTATTAGGGAGAAGAAAATAAAGTATG +AAGGAGGCCTCCAATTTGTTGAGCACTTACTGGAAACTGAATCAAGGAAGGGTAATATAC +CGCAACCTTATAAAATAACATTCTCAGTGGTTGCAGTTAAAACAGATGGATCAAACATCT +CGACTCAGTGGCCCAGTCGGAGGAACGATGGGGTAATTCAGCACATGCGTCTAGTCCAAG +CTGATATAAATTATGTCAGAGAGCATTTAATAAAGTTAGATGAGAGAGCATCTTTGGAGG +CAATGTTTAACTTAAAGTTCCATGTATCAGGCCCTAAACTGAGATACTTTAACATCCCTG +ATTATAGACCACAGCAGCTATGTGAACCACGGATTGACAACTTAATACAATATTGCAAGA +ATTGGTTGACAAAAGAACATAAGTTTGTATTCAAAGAAGTCAGTGGAGCTAATGTGATTC +AAGCATTTGAGAGTCATGAACAGTTACATTTACAGAAATACAACGAATCACGAAAACCAA +GAAATTTTTTACTCTTGCAGCTTACAGTGCAAGGGGCATATCTACCATCAACAATCAGTT +CTGACCAGTGCAATACTAGGATTGGGTGTCTAGAAATATCAAAAAACCAACCAGAAACAC +CAGTACAGATGCTTGCATTGGATATATCTTATAAGTATCTGAGTCTTACAAGGGATGAGT +TGATCAATTATTATAGCCCTAGAGTGCACTTTCAATCGAGCCCTAATGTGAAGGAACCAG +GGACACTGAAGTTAGGATTATCACAATTAAATCCACTCTCTAAATCAATTCTTGACAATG +TTGGAAAGCATAAAAAGGATAAAGGATTATTTGGTGAGATCATAGATAGCATAAATGTGG +CAAGTCAAATACAGATCAATGCATGTGCAAAAATAATTGAGCAGATCTTATCAAATCTTG +AAATAAACATTGGAGAAATAAATGCTAGTATGCCTTCTCCTAATAAGACAACAGGTGTAG +ATGACCTGTTAAATAAATTTTATGATAATGAGCTTGGTAAATATATGTTATCCATTCTGA +GGAAAACAGCAGCATGGCATATAGGCCATCTAGTCAGAGATATCACAGAAAGTTTAATTG +CACATGCTGGGCTGCGCCGTTCTAAATATTGGTCAGTACATGCATATGACCATGGGAATG +TAATTTTGTTTATCTTGCCATCAAAGTCACTAGAGGTAGTAGGTTCTTATATAAGGTATT +TCACAGTATTTAAAGATGGTATAGGGTTGATAGACGCAGATAATATTGATTCTAAGGCCG +AAATTGATGGTGTCACCTGGTGTTATTCTAAGGTCATGAGTATTGATTTAAACAGGTTAT +TGGCTTTGAACATAGCTTTTGAGAAGTCACTTCTTGCCACGGCTACATGGTTCCAATATT +ATACTGAAGACCAAGGCCATTTTCCCCTTCAACATGCATTAAGGTCAATCTTTTCTTTCC +ACTTTTTACTCTGTGTGTCACAAAAGATGAAGCTATGTGCAATATTTGATAACCTTCGTT +ATCTGATACCATCAGTAACATCTTTGTACTCTGGGTACGAGTTGTTAATAGAAAAATTCT +TTGAGAGACCATTTAAGAGTTCACTGGATGTATACCTTTATTCTATCATAAAATCTCTAT +TAATTAGTTTGGCACAAAATAATAAAGTTCGATTTTACTCAAGAGTTCGTTTGTTAGGAT +TGACAGTTGATCACTCCACGGTCGGAGCAAGTGGTGTTTACCCCTCTTTAATGTCCCGTG +TTGTTTACAAACATTACAGAAGTTTAATCTCTGAAGCTACAACTTGTTTTTTCTTATTTG +AAAAGGGTTTGCATGGGAATTTACCAGAAGAGGCTAAAATACATCTTGAAACCATTGAAT +GGGCTCGGAAGTTCCAGGAGAAAGAAAAACAATATGGTGATATTCTTCTAAAGGAAGGCT +ATACAATTGAATCTGTAATCAATGGAGAAGTTGATGTAGAACAACAGCTTTTTTGTCAGG +AGGTCTCAGAGCTAAGTGCACAAGAGCTCAACAAATATTTACAGGCAAAATCTCAAGTTT +TATGTGCTAATATCATGAATAAACACTGGGACAAACCATATTTCAGTCAAACACGCAATA +TCAGTCTCAAGGGAATGTCTGGGGCATTGCAAGAGGATGGACATTTAGCTGCTAGTGTGA +CACTGATTGAAGCAATTAGGTTTTTAAATAGATCACAAACCAATCCAAATGTTATTGATA +TGTATGAGCAGACTAAACAATCAAAGGCACAAGCTAGGATTGTTAGGAAATACCAGAGAA +CAGAAGCAGATAGAGGATTTTTTATCACAACATTACCAACTAGGGTGCGATTAGAAATAA +TAGAAGATTATTTCGATGCAATTGCAAAGGTTGTGCCTGAAGAATATATTTCTTATGGTG +GGGATAAAAAAGTTCTAAATATTCAGAATGCACTAGAGAAAGCACTTAGATGGGCATCTG +GAGTATCAGAAATTACAACAAGCACTGGTAAAAGCATCAAGTTTAAGCGGAAATTAATGT +ATGTTAGTGCTGATGCCACAAAATGGTCACCAGGAGATAATTCTGCTAAGTTTAGGAGAT +TTACACAAGCAATATATGATGGCTTATCAGACAACAAACTGAAATGTTGTGTTGTTGATG +CATTACGTAACATTTATGAGACTGAATTTTTTATGTCCAGGAAATTACACCGATATATTG +ATAGTATGGAAAATCATTCAGATGCGGTTGAAGATTTCTTGGCATTTTTCTCAAATGGAG +TCTCAGCCAATGTAAAGGGAAACTGGCTTCAAGGGAACTTAAATAAATGCTCATCATTAT +TTGGTGCTGCTGTCTCATTACTTTTTCGGGAGGTCTGGAAACAATTGTTTCCAGAATTAG +AGTGTTTTTTTGAATTTGCACATCATTCAGATGATGCATTGTTCATTTATGGCTATCTGG +AGCCTGAAGATGATGGAACAGATTGGTTTTTGTATGTATCACAGCAGATACAGGCAGGAA +ACTTTCATTGGCATGCTATAAATCAAGAGATGTGGAAGAGCATGTTTAATCTACATGAGC +ACTTACTATTAATGGGTTCTATTAAAGTGTCACCTAAGAAGACAACAGTATCACCTACTA +ATGCAGAATTTCTTTCTACTTTTTTTGAAGGTTGTGCTGTGTCAATCCCTTTTGTTAAAA +TCTTACTGGGTTCATTATCAGATCTTCCTGGGTTAGGTTTCTTTGATGATTTAGCAGCAG +CACAAAGCAGATGTGTAAAGTCACTAGATTTGGGTGCTTGCCCACAATTAGCTCAACTAG +CTATAGTATTATGCACAAGCAAAGTTGAGAGGTTGTATGGTACTGCTGATGGAATGGTAA +ACTCTCCAACAGCATTCCTTAAGGTGAATAAAGCACACGTACCAGTACCACTTGGTGGTG +ATGGCTCAATGTCTATTATGGAGCTTGCAACAGCTGGTTTTGGGATGGCAGATAAGAATA +TTTTAAAAAATGCATTCATATCTTATAAGCATACTCGTAGAGATGGTGATAGGTACGTAT +TGGGTTTATTTAAATTTTTGATGTCATTAAGTGAGGATGTATTCCAGCACGACCGATTGG +GTGAGTTTAGTTTTGTAGGTAAAGTTCAATGGAAAGTGTTCACTCCTAAAGCTGAATTTG +AATTTCATGATCAATTTTCACATAATTATTTATTAGAGTGGACACGTCAACATCCTGTGT +ATGACTATATTATTCCTAGAAATAGAGATAATTTGCTTGTATACCTTGTAAGAAAGTTGA +ATGATCCTAGCATCATTACAGCTATGACTATGCAGTCACCATTACAACTTCGTTTCCGTA +TGCAAGCAAAGCAACATATGAAAGTATGCCGGTATGAAGGTGAATGGGTCACATTCAGGG +AGGTACTTGCTGCAGCTGATAGTTTTGCTACGAGTTACCAACCTACTGAAAGGGACATGG +ATCTCTTTAATACACTTGTAAGTTGTACATTTTCTAAAGAGTATGCTTGGAAAGACTTTT +TAAATGAAGTAAGGTGTGAGGTCTTAACAACAAGACATGTACATAGGCCTAAAATTGCTA +GGACATTCACTGTTAGAGAAAAGGACCAGGCTATACAAAATCCAATAAATTCGGTGATTG +GCTATAAGTATGCTCTTACAGTGGATGAAGTCAGTGATGTTCTTGATAGTGCATTCTTCC +CAGAGTCTCTATCTGCAGACTTACAGGTTATGAAAGATGGAGTTTACAGAGAATTAGGAC +TTGATATAAGTTCTCCTGAAGTCCTAAAACGCATAGCACCACTATTATATAAGGCAGGAA +GGTCACGTGTTGTTATTGTGGAAGGAAATGTAGAAGGGACAGCTGAGTCAATCTGTAGTT +ATTGGCTCAAGACAATGTCACTGATTAAAACAATCAGAGTAAGACCTAAGAAGGAGGTAC +TGAAAGCTATGTCTTTATATAGTGTTAAAGAAAATATTGGATTGCAGGATGATATTGCAG +CAACTCGACTATGCATAGAAATCTGGAGATGGTGTAAGGCAAATGAACAGGATGTTAAAG +AATGGCTAACATCTCTGTACTTTGAAAAACAGACATTGATGGATTGGGTAGAAAGGTTTA +GAAGGAAAGGAGTTGTTCCTATTGATCCTGAAATACAATGTATTGGCCTACTCTTATATG +ATGTATTAGGTTATAAAAGTGTGTTACAAATGCAAGCAAACCGAAGAGCCTATTCAGGTA +AGCAATATGATGCATACTGTGTGCAAACATATAACGAGGAAACAAAACTATATGAAGGTG +ACCTTCGTGTTACTTTTAATTTTGGTTTAGATTGTGCAAGGTTAGAAGTTTTTTGGGATA +AAAAAGAGTATATCTTAGAGACATCTATCACCCAACGACATGTGTTGCGGTTACTGATGG +AAGAAGTGTCACAAGAATTAATTAGATGTGGAATGAGATTCAAAACAGAGCAAGTCAATC +AAACTCGGAGCTTAGTGTTATTCAAAACAGAGGCTGGTTTTGAATGGGGTAAGCCTAATG +TGCCATGTATTGTATATAAACACTGTGTCTTGAGAACTGGGCTTCGTACGAAACAGACAA +TTAATAAAGAGTTCATGATAAATGTACAAAGTGATGGTTTCCGTGCAATAGCACAGATGG +ATATTGAGAGTCCACGGTTCTTGTTAGCACATGCATATCATACACTGCGTGATATTAGAT +ATCAAGCAGTGCAGGCAGTAGGGAATGTATGGTTTAAAACAGAACAGCACAAACTATTTA +TTAACCCAATTATATCATCAGGGCTTTTAGAAAACTTTATGAAAGGCTTACCTGCTGCCA +TACCTCCTGCTGCATATTCCCTCATAATGAACAAGGCTAAGATTTCTGTGGATTTGTTTA +TGTTCAATGAGCTATTAGCACTTATAAATAGGAATAATATCCTCAACCTTGATGGGATTG +AAGAAACATCTGAAGGTTATAGTACTGTGACATCAATGTCTAGCAAGCAGTGGTCTGAAG +AGATGAGTTTAATGTCTGATGATGATATTGATGATATGGAGGACTTTACTATAGCACTGG +ATGATATTGACTTTGAACAAATAAATTTGGAAGAGGATATACAACACTTTCTGCAGGATG +AATCAGCATATGTTGGTGATTTATTGATTCAGACAGAAGACATTGAGGTTAAAAAGATAC +GTGGGGTGACAAGAGTATTAGAGCCAGTCAAGCTATTAAAAAGCTGGGTTTCTAAAGGCC +TTGCTATAGACAAAGTATACAATCCTATCGGGATAATCTTAATGGCAAGATACATGTCAA +AAACATACAATTTCAGTTCAACACCTCTTGCACTATTAAATCCATATGACTTGACAGAAC +TTGAAAGTGTTGTAAAGGGATGGGGAGAAACTGTAAATGATCGATTCAAAGATTTAGATA +TTGAGGCACAAACAGTTGTTAAAGAAAAGGGTGTACAGCCAGAAGATGTACTCCCTGATT +CATTATTCTCTTTCAGGCATGTTGATGTTTTGCTGCGAAGGTTGTTCCCGCGTGACCCTG +TATCAACATTCTATTAGTGGATTTTATACCTTATTCATACAGTATGTATATTGTGGTGTT +CTTTTCCCGGAGACTACTAACTA +>OP555733 +TAGAAAAAGTTAGAAAAATGGAAAAGTACAGAGAGATTCATCAGAGAGTTAGGGATCTTG +CACCTGGAACGGTATCAGCATTAGAATGCATAGATCTACTGGATAGGCTCTATGCTGTTA +GACATGATTTAGTTGACCAGATGATAAAACATGATTGGTCTGACAATAAAGATGTAGAAA +GGCCTATAGGTCAAGTCTTGCTGATGGCTGGCATCCCTAATGATATTATACAAGGCATGG +AGAAGAAGATCATACCAAATAGCCCTTCTGGACAAGTGCTGAAGAGCTTTTTCCGAATGA +CACCAGACAACTATAAAATTACAGGCAATTTGATTGAGTTCATTGAAGTGACTGTGACAG +CTGATGTATCACGAGGTATTAGGGAGAAGAAAATAAAGTATGAAGGAGGTCTTCAGTTTG +TTGAGCACTTACTCGAAATCGAATCAAAGAAAGGTAACATACCGCAACCCTATAAAATAA +CATTCTCAGTGGTTGCAGTTAAAACAGATGGATCAAACATTTCGACTCAATGGCCTAGTC +GGAGAAACGATGGGGTAGTTCAGCACATGCGTCTAGTCCAAGCTGATATTAATTATGTCC +GAGAGCATTTAATAAAGTTAGATGAGAGAGCATCATTGGAAGCAATGTTCAACTTAAAAT +TTCATGTGTCAGGCCCTAAATTGAGATACTTCAACATCCCTGATTATAGACCACAGCAGC +TATGTGAACCGCGGATTGATAACTTAATACAATATTGCAAGAATTGGTTGACAAAAGAAC +ATAAATTTGTATTCAAGGAAGTCAGTGGAGCTAATGTGATTCAAGCATTTGAGAGTCATG +AGCAGTCACACTTACAGAAATACAATGAATCACGGAAACCGAGAAATTTTTTACTCTTGC +AACTTACGGTGCAAGGAGCATATCTGCCATCAACAATCAGTTCTGACCAGTGCAATACTA +GGATTGGGTGCCTAGAAATATCAAAAAACCAACCAGAAACACCAGTACAGATGCTTGCAT +TAGATATAGCTTATAAGTATCTGAGCCTCACAAAGGATGAGTTGATTAATTATTATAGCC +CTAGAGTGCACTTTCAATCAAGCCCTAATGTAAAGGAACCAGGGACATTAAAGTTAGGAT +TATCACAATTGAATCCACTCTCTAAATCCATCCTTGACAATGTTGGAAAGCACAAAAAGG +ATAAAGGGTTGTTTGGTGAGGTCATAGATAGCATAAATGTGGCAAGTCAAATACAGATCA +ATGCATGTGCAAAAATAATTGAGCAGATTTTATCAAATCTTGAAATAAATATTGGAGAAA +TAAATGCTAGTATGCCTTCTCCTAATAAGACAACAGGTGTGGACGACTTGTTGAATAAAT +TTTATGATAATGAGCTTGGGAAATATATGTTATCCATCCTGAGGAAAACAGCAGCATGGC +ATATAGGCCATTTAGTCAGAGATATCACAGAAAGTTTAATTGCACATGCCGGTCTGCGTC +GTTCTAAATACTGGTCAGTACATGCATATGACCATGGGAATGTAATTCTGTTTATTTTGC +CATCAAAGTCATTAGAAGTAGTAGGTTCTTATATAAGATATTTTACAGTATTTAAGGATG +GTATAGGATTAATAGATGTGGACAATATTGATTCTAAGGCCGAAATTGATGGTGTTACTT +GGTGTTACTCCAAAGTCATGAGTATTGATTTAAATAGATTATTGGCCTTAAATATAGCCT +TTGAGAAATCACTTCTTGCCACGGCAACATGGTTTCAATATTATACTGAAGACCAAGGTC +ATTTTCCCCTTCAACATGCATTGAGGTCAATCTTTTCTTTTCACTTTTTACTATGTGTGT +CACAGAAGATGAAACTATGTGCAATATTCGACAACCTTCGTTATCTGATACCATCAGTAA +CATCTTTATATTCTGGGTATGAGTTGTTAATAGAGAAATTCTTTGAGAGGCCTTTTAAGA +GTTCACTGGATGTATACCTTTATTCTATTATAAAGTCTCTGTTAATTAGTTTGGCACAAA +ATAATAAAGTTCGGTTTTACTCAAGAGTTCGCTTGTTAGGATTGACAGTTGATCATTCTA +CTGTCGGAGCAAGTGGTGTTTATCCCTCTTTAATGTCCCGTGTTGTTTATAAACATTATA +GAAGCTTAATCTCTGAAGCTACAACCTGTTTCTTCTTATTTGAAAAGGGTTTGCATGGGA +ATTTACCGGAAGAGGCTAAGATACATCTTGAAACCATCGAATGGGCTCGAAAGTTTCAGG +AGAAAGAGAAACAATATGGTGATATTCTTTTAAAGGAAGGCTATACGATTGAATCTGTAA +TTAACGGAGAAGTTAATGTAGAACAACAGCTCTTTTGTCAAGAGGTGTCGGAGCTAAGTG +CACAGGAACTCAACAAATATCTACAAGCAAAATCTCAAGTTTTATGTGCTAATATCATGA +ATAAGCACTGGGATAAACCATATTTTAGTCAAACACGCAATATCAGTCTTAAGGGAATGT +CCGGTGCATTGCAAGAAGATGGGCATTTAGCTGCTAGTGTAACACTAATTGAAGCAATTA +GATTTTTAAATAGATCACAGACCAATCCAAATGTTATTGATATGTATGAGCAAACTAAAC +AATCAAAGGCACAAGCTAGGATTGTCAGGAAGTACCAGAGAACAGAAGCAGATAGAGGAT +TTTTTATCACAACATTACCAACTAGGGTGCGACTAGAGATAATAGAAGATTATTTTGATG +CGATCGCAAAGGTTGTGCCTGAAGAATACATTTCTTATGGTGGGGATAAAAAGGTTCTAA +ATATTCAAAATGCACTAGAAAAAGCACTTAGATGGGCATCTGGAGTATCAGAAATTACAA +CAAGTACTGGTAAAAGCATTAAGTTTAAGCGGAAATTAATGTATGTTAGTGCTGATGCAA +CAAAATGGTCACCAGGAGACAATTCTGCCAAATTTAGGAGATTTACACAAGCAATATATG +ATGGTTTATCAGATAACAAGTTGAAATGTTGTGTTGTTGATGCATTGCGCAACATTTATG +AGACTGAATTCTTTATGTCTAGGAAATTACACCGATATATTGATAGTATGGAAGATCATT +CAGATGCAGTTGAAGACTTCTTGGCATTTTTTTCAAATGGAGTCTCAGCTAACGTAAAGG +GAAATTGGCTTCAAGGAAATTTAAATAAATGCTCATCGTTATTTGGTGCTGCTGTCTCAT +TACTTTTTCGGGAGGTCTGGAAACAATTATTTCCAGAATTAGAATGTTTTTTTGAATTTG +CACATCATTCAGATGATGCATTATTTATTTATGGCTATTTAGAGCCTGAAGATGATGGAA +CAGATTGGTTTTTGTATGTGTCACAGCAGATACAGGCAGGAAATTTTCATTGGCATGCTA +TAAATCAAGAGATGTGGAAGAGTATGTTTAATCTACATGAACATTTACTGTTAATGGGTT +CCATTAAAGTGTCACCTAAGAAGACAACAGTTTCACCTACTAATGCAGAATTTCTTTCTA +CTTTTTTTGAGGGTTGTGCTGTGTCAATCCCTTTTGTTAAAATATTACTAGGTTCATTAT +CAGATCTTCCTGGGTTAGGTTTCTTTGATGATTTAGCAGCAGCACAGAGTAGATGTGTAA +AGTCATTAGATTTGGGTGCTTGCCCACAATTAGCTCAACTAGCGATAGTGTTATGCACAA +GCAAAGTTGAGAGGTTGTATGGTACTGCTGATGGAATGGTAAACTCTCCAACAGCATTCC +TTAAGGTAAATAAAGCACATGTACCAGTACCACTTGGTGGTGATGGCTCAATGTCTATTA +TGGAACTTGCAACAGCTGGTTTTGGAATGGCAGATAAAAATATTCTAAAAAATGCATTCA +TGTCTTATAAGCATACTCGTAGAGAAGGTGATAGATATGTATTGGGCTTATTTAAATTTT +TGATGTCATTAAGTGAGGATGTATTCCAGCACGACCGATTAGGTGAGTTTAGTTTTGTAG +GTAAAGTTCAATGGAAAGTGTTTACTCCTAAAGCTGAATTTGAATTTCATGATCAATTTT +CGCACAATTATTTATTAGAGTGGACACGTCAACATCCTGTGTATGACTATATTATTCCTA +GAAATAGAGATAATTTGCTTGTATACCTTGTGAGAAAGTTGAATGATCCTAGCATCATCA +CAGCTATGACTATGCAGTCACCATTGCAACTCCGTTTTCGTATGCAGGCGAAACAACATA +TGAAAGTATGCCGGTATGAAGGTGAATGGGTCACATTCAGGGAGGTACTTGCTGCAGCTG +ATAGTTTCGCCACAAGTTACCAGCCTACTGAAAGGGACATGGATCTTTTTAATACACTTG +TAAGTTGTACATTCTCTAAAGAGTATGCTTGGAAAGACTTTTTAAATGAAGTAAGGTGTG +AGGTCTTAACAACAAGACATGTACATAGACCTAAAATTGCTAGGACATTCACTGTTAGGG +AAAAGGACCAGGCTATACAAAATCCAATAAATTCTGTGATTGGCTATAAGTATGCTCTCA +CAGTAGATGAAGTCAGTGATGTCCTTGATAGTGCATTCTTCCCAGAATCTTTATCCGCAG +ACTTACAGGTTATGAAGGATGGGGTTTATAGGGAATTAGGGCTTGATATAAGTTCTCCTG +AGGTTTTAAAACGCATAGCACCATTATTATATAAGGCAGGAAGGTCACGTGTTGTTATTG +TGGAAGGAAATGTAGAGGGGACAGCTGAGTCAATCTGTAGTTATTGGCTTAAGACAATGT +CACTGATTAAAACAATCAGAGTAAGACCTAAGAAGGAAGTACTGAAAGCTATGTCTTTAT +ATAGTGTTAAGGAAAATATTGGATTGCAGGACGATATTGCAGCAACTCGATTGTGCATAG +AAATCTGGAGGTGGTGTAAGGCAAATGAACAGGATGTTAAAGAATGGCTAACATCTTTGT +ATTTTGAAAAACAAACATTGATGGATTGGATAGAAAGGTTTAGAAGAAAAGGAGTTGTGC +CTATTGATCCTGAGATACAATGTATTGGCCTGCTCTTATATGATGTGTTAGGCTATAAAA +GTGTGTTACAAATGCAAGCAAACCGAAGAGCCTATTCGGGCAAGCAGTATGATGCATACT +GTGTGCAAACGTATAATGAGGAGACCAAACTATACGAAGGTGACCTCCGCGTCACTTTCA +ATTTTGGCCTAGACTGTGCAAGATTAGAAGTCTTTTGGGATAAAAGGGAGTATATTTTAG +AGACATCTATTACCCAGCGACATGTATTACGGTTGTTGATGGAAGAGGTGTCACAAGAAT +TAATTAGATGTGGAATGAGATTCAAAACAGAACAAGTCAATCAAACTAGGAGCTTAGTGT +TATTTAAAACAGAGGCTGGTTTTGAATGGGGTAAGCCTAATGTGCCATGTATTGTATATA +AACACTGTGTTTTGAGAACTGGACTTCGTACAAAACAGCCAATTAATAAAGAGTTTATGA +TAAATGTACAAAGTGATGGGTTCCGTGCAATAGCACAGATGGATATTGAAAGTCCACGGT +TCTTGTTGGCACATGCGTATCATACATTACGTGATATTAGGTATCAAGCAGTACAGGCAG +TAGGGAATGTATGGTTTAAAACAGAACAGCACAAACTATTTATTAACCCAATCATATCAT +CAGGACTCTTAGAAAATTTTATGAAAGGCTTACCTGCTGCCATACCTCCTGCTGCATATT +CTCTAATAATGAATAAGGCTAAAATCTCTGTGGATTTGTTTATGTTCAATGAACTATTAG +CACTTATAAATAGGAATAATATTCTCAACCTTGATGGGATTGAAGAAACATCTGAAGGTT +ATAGTACTGTGACATCAATGTCTAGCAAGCAGTGGTCTGAAGAGATGAGTTTAATGTCTG +ATGATGATATCGATGACATGGAGGATTTCACTATAGCATTAGATGATATTGACTTTGAAC +AAATAAATTTAGAAGAGGATATACAGCATTTTCTGCAGGATGAATCAGCATATGTTGGTG +ATTTATTAATTCAGACAGAGGACATTGAAGTTAAAAAGATACGTGGGGTGACAAGAGTAT +TAGAACCAGTTAAGCTATTAAAAAGTTGGGTTTCTAAAGGTCTTGCTATAGACAAAGTAT +ACAATCCCATTGGGATAATCCTAATGGCAAGATACATGTCAAAAACATACAATTTCAGTT +CAACACCTCTTGCACTACTAAACCCATATGACTTGACAGAGCTTGAAAGTGTTGTAAAGG +GATGGGGAGAAACTGTAAATGATCGATTTAAAGATTTAGATGTTGAGGCACAAGCTGTTG +TTAAAGAGAAAGGTGTACAACCAGAAGATGTACTCCCTGATTCATTATTCTCTTTCAGGC +ATGTTGATGTTCTGCTGCGAAGGTTGTTCCCGCGTGACCCTGTCTCAACATTCTA +>OP555735 +GTAGAAAAATGGAAAAGTACAGAGAGATTCATCAGAGAGTTAGGGATCTTGCACCTGGAA +CGGTATCAGCATTAGAATGCATAGATCTACTGGATAGGCTCTATGCTGTTAGACATGATT +TAGTTGACCAGATGATAAAACATGATTGGTCTGACAATAAAGATGTAGAAAGGCCTATAG +GTCAAGTCTTGCTGATGGCTGGCATCCCTAATGATATTATACAAGGCATGGAGAAGAAGA +TCATACCAAATAGCCCTTCTGGACAAGTGCTGAAGAGCTTTTTCCGAATGACACCAGACA +ACTATAAAATTACAGGCAATTTGATTGAGTTCATTGAAGTGACTGTGACAGCTGATGTAT +CACGAGGTATTAGGGAGAAGAAAATAAAGTATGAAGGAGGTCTTCAGTTTGTTGAGCACT +TACTCGAAATCGAATCAAAGAAAGGTAACATACCGCAACCCTATAAAATAACATTCTCAG +TGGTTGCAGTTAAAACAGATGGATCAAACATTTCGACTCAATGGCCTAGTCGGAGAAACG +ATGGGGTAGTTCAGCACATGCGTCTAGTCCAAGCTGATATTAATTATGTCCGAGAGCATT +TAATAAAGTTAGATGAGAGAGCATCATTGGAAGCAATGTTCAACTTAAAATTTCATGTGT +CAGGCCCTAAATTGAGATACTTCAACATCCCTGATTATAGACCACAGCAGCTATGTGAAC +CGCGGATTGATAACTTAATACAATATTGCAAGAATTGGTTGACAAAAGAACATAAATTTG +TATTCAAGGAAGTCAGTGGAGCTAATGTGATTCAAGCATTTGAGAGTCATGAGCAGTCAC +ACTTACAGAAATACAATGAATCACGGAAACCGAGAAATTTTTTACTCTTGCAACTTACGG +TGCAAGGAGCATATCTGCCATCAACAATCAGTTCTGACCAGTGCAATACTAGGATTGGGT +GCCTAGAAATATCAAAAAACCAACCAGAAACACCAGTACAGATGCTTGCATTAGATATAG +CTTATAAGTATCTGAGCCTCACAAAGGATGAGTTGATTAATTATTATAGCCCTAGAGTGC +ACTTTCAATCAAGCCCTAATGTAAAGGAACCAGGGACATTAAAGTTAGGATTATCACAAT +TGAATCCACTCTCTAAATCCATCCTTGACAATGTTGGAAAGCACAAAAAGGATAAAGGGT +TGTTTGGTGAGGTCATAGATAGCATAAATGTGGCAAGTCAAATACAGATCAATGCATGTG +CAAAAATAATTGAGCAGATTTTATCAAATCTTGAAATAAATATTGGAGAAATAAATGCTA +GTATGCCTTCTCCTAATAAGACAACAGGTGTGGACGACTTGTTGAATAAATTTTATGATA +ATGAGCTTGGGAAATATATGTTATCCATCCTGAGGAAAACAGCAGCATGGCATATAGGCC +ATTTAGTCAGAGATATCACAGAAAGTTTAATTGCACATGCCGGTCTGCGTCGTTCTAAAT +ACTGGTCAGTACATGCATATGACCATGGGAATGTAATTCTGTTTATTTTGCCATCAAAGT +CATTAGAAGTAGTAGGTTCTTATATAAGATATTTTACAGTATTTAAGGATGGTATAGGAT +TAATAGATGTGGACAATATTGATTCTAAGGCCGAAATTGATGGTGTTACTTGGTGTTACT +CCAAAGTCATGAGTATTGATTTAAATAGATTATTGGCCTTAAATATAGCCTTTGAGAAAT +CACTTCTTGCCACGGCAACATGGTTTCAATATTATACTGAAGACCAAGGTCATTTTCCCC +TTCAACATGCATTGAGGTCAATCTTTTCTTTTCACTTTTTACTATGTGTGTCACAGAAGA +TGAAACTATGTGCAATATTCGACAACCTTCGTTATCTGATACCATCAGTAACATCTTTAT +ATTCTGGGTATGAGTTGTTAATAGAGAAATTCTTTGAGAGGCCTTTTAAGAGTTCACTGG +ATGTATACCTTTATTCTATTATAAAGTCTCTGTTAATTAGTTTGGCACAAAATAATAAAG +TTCGGTTTTACTCAAGAGTTCGCTTGTTAGGATTGACAGTTGATCATTCTACTGTCGGAG +CAAGTGGTGTTTATCCCTCTTTAATGTCCCGTGTTGTTTATAAACATTATAGAAGCTTAA +TCTCTGAAGCTACAACCTGTTTCTTCTTATTTGAAAAGGGTTTGCATGGGAATTTACCGG +AAGAGGCTAAGATACATCTTGAAACCATCGAATGGGCTCGAAAGTTTCAGGAGAAAGAGA +AACAATATGGTGATATTCTTTTAAAGGAAGGCTATACGATTGAATCTGTAATTAACGGAG +AAGTTAATGTAGAACAACAGCTCTTTTGTCAAGAGGTGTCGGAGCTAAGTGCACAGGAAC +TCAACAAATATCTACAAGCAAAATCTCAAGTTTTATGTGCTAATATCATGAATAAGCACT +GGGATAAACCATATTTTAGTCAAACACGCAATATCAGTCTTAAGGGAATGTCCGGTGCAT +TGCAAGAAGATGGGCATTTAGCTGCTAGTGTAACACTAATTGAAGCAATTAGATTTTTAA +ATAGATCACAGACCAATCCAAATGTTATTGATATGTATGAGCAAACTAAACAATCAAAGG +CACAAGCTAGGATTGTCAGGAAGTACCAGAGAACAGAAGCAGATAGAGGATTTTTTATCA +CAACATTACCAACTAGGGTGCGACTAGAGATAATAGAAGATTATTTTGATGCGATCGCAA +AGGTTGTGCCTGAAGAATACATTTCTTATGGTGGGGATAAAAAGGTTCTAAATATTCAAA +ATGCACTAGAAAAAGCACTTAGATGGGCATCTGGAGTATCAGAAATTACAACAAGTACTG +GTAAAAGCATTAAGTTTAAGCGGAAATTAATGTATGTTAGTGCTGATGCAACAAAATGGT +CACCAGGAGACAATTCTGCCAAATTTAGGAGATTTACACAAGCAATATATGATGGTTTAT +CAGATAACAAGTTGAAATGTTGTGTTGTTGATGCATTGCGCAACATTTATGAGACTGAAT +TCTTTATGTCTAGGAAATTACACCGATATATTGATAGTATGGAAGATCATTCAGATGCAG +TTGAAGACTTCTTGGCATTTTTTTCAAATGGAGTCTCAGCTAACGTAAAGGGAAATTGGC +TTCAAGGAAATTTAAATAAATGCTCATCGTTATTTGGTGCTGCTGTCTCATTACTTTTTC +GGGAGGTCTGGAAACAATTATTTCCAGAATTAGAATGTTTTTTTGAATTTGCACATCATT +CAGATGATGCATTATTTATTTATGGCTATTTAGAGCCTGAAGATGATGGAACAGATTGGT +TTTTGTATGTGTCACAGCAGATACAGGCAGGAAATTTTCATTGGCATGCTATAAATCAAG +AGATGTGGAAGAGTATGTTTAATCTACATGAACATTTACTGTTAATGGGTTCCATTAAAG +TGTCACCTAAGAAGACAACAGTTTCACCTACTAATGCAGAATTTCTTTCTACTTTTTTTG +AGGGTTGTGCTGTGTCAATCCCTTTTGTTAAAATATTACTAGGTTCATTATCAGATCTTC +CTGGGTTAGGTTTCTTTGATGATTTAGCAGCAGCACAGAGTAGATGTGTAAAGTCATTAG +ATTTGGGTGCTTGCCCACAATTAGCTCAACTAGCGATAGTGTTATGCACAAGCAAAGTTG +AGAGGTTGTATGGTACTGCTGATGGAATGGTAAACTCTCCAACAGCATTCCTTAAGGTAA +ATAAAGCACATGTACCAGTACCACTTGGTGGTGATGGCTCAATGTCTATTATGGAACTTG +CAACAGCTGGTTTTGGAATGGCAGATAAAAATATTCTAAAAAATGCATTCATGTCTTATA +AGCATACTCGTAGAGAAGGTGATAGATATGTATTGGGCTTATTTAAATTTTTGATGTCAT +TAAGTGAGGATGTATTCCAGCACGACCGATTAGGTGAGTTTAGTTTTGTAGGTAAAGTTC +AATGGAAAGTGTTTACTCCTAAAGCTGAATTTGAATTTCATGATCAATTTTCGCACAATT +ATTTATTAGAGTGGACACGTCAACATCCTGTGTATGACTATATTATTCCTAGAAATAGAG +ATAATTTGCTTGTATACCTTGTGAGAAAGTTGAATGATCCTAGCATCATCACAGCTATGA +CTATGCAGTCACCATTGCAACTCCGTTTTCGTATGCAGGCGAAACAACATATGAAAGTAT +GCCGGTATGAAGGTGAATGGGTCACATTCAGGGAGGTACTTGCTGCAGCTGATAGTTTCG +CCACAAGTTACCAGCCTACTGAAAGGGACATGGATCTTTTTAATACACTTGTAAGTTGTA +CATTCTCTAAAGAGTATGCTTGGAAAGACTTTTTAAATGAAGTAAGGTGTGAGGTCTTAA +CAACAAGACATGTACATAGACCTAAAATTGCTAGGACATTCACTGTTAGGGAAAAGGACC +AGGCTATACAAAATCCAATAAATTCTGTGATTGGCTATAAGTATGCTCTCACAGTAGATG +AAGTCAGTGATGTCCTTGATAGTGCATTCTTCCCAGAATCTTTATCCGCAGACTTACAGG +TTATGAAGGATGGGGTTTATAGGGAATTAGGGCTTGATATAAGTTCTCCTGAGGTTTTAA +AACGCATAGCACCATTATTATATAAGGCAGGAAGGTCACGTGTTGTTATTGTGGAAGGAA +ATGTAGAGGGGACAGCTGAGTCAATCTGTAGTTATTGGCTTAAGACAATGTCACTGATTA +AAACAATCAGAGTAAGACCTAAGAAGGAAGTACTGAAAGCTATGTCTTTATATAGTGTTA +AGGAAAATATTGGATTGCAGGACGATATTGCAGCAACTCGATTGTGCATAGAAATCTGGA +GGTGGTGTAAGGCAAATGAACAGGATGTTAAAGAATGGCTAACATCTTTGTATTTTGAAA +AACAAACATTGATGGATTGGATAGAAAGGTTTAGAAGAAAAGGAGTTGTGCCTATTGATC +CTGAGATACAATGTATTGGCCTGCTCTTATATGATGTGTTAGGCTATAAAAGTGTGTTAC +AAATGCAAGCAAACCGAAGAGCCTATTCGGGCAAGCAGTATGATGCATACTGTGTGCAAA +CGTATAATGAGGAGACCAAACTATACGAAGGTGACCTCCGCGTCACTTTCAATTTTGGCC +TAGACTGTGCAAGATTAGAAGTCTTTTGGGATAAAAGGGAGTATATTTTAGAGACATCTA +TTACCCAGCGACATGTATTACGGTTGTTGATGGAAGAGGTGTCACAAGAATTAATTAGAT +GTGGAATGAGATTCAAAACAGAACAAGTCAATCAAACTAGGAGCTTAGTGTTATTTAAAA +CAGAGGCTGGTTTTGAATGGGGTAAGCCTAATGTGCCATGTATTGTATATAAACACTGTG +TTTTGAGAACTGGACTTCGTACAAAACAGCCAATTAATAAAGAGTTTATGATAAATGTAC +AAAGTGATGGGTTCCGTGCAATAGCACAGATGGATATTGAAAGTCCACGGTTCTTGTTGG +CACATGCGTATCATACATTACGTGATATTAGGTATCAAGCAGTACAGGCAGTAGGGAATG +TATGGTTTAAAACAGAACAGCACAAACTATTTATTAACCCAATCATATCATCAGGACTCT +TAGAAAATTTTATGAAAGGCTTACCTGCTGCCATACCTCCTGCTGCATATTCTCTAATAA +TGAATAAGGCTAAAATCTCTGTGGATTTGTTTATGTTCAATGAACTATTAGCACTTATAA +ATAGGAATAATATTCTCAACCTTGATGGGATTGAAGAAACATCTGAAGGTTATAGTACTG +TGACATCAATGTCTAGCAAGCAGTGGTCTGAAGAGATGAGTTTAATGTCTGATGATGATA +TCGATGACATGGAGGATTTCACTATAGCATTAGATGATATTGACTTTGAACAAATAAATT +TAGAAGAGGATATACAGCATTTTCTGCAGGATGAATCAGCATATGTTGGTGATTTATTAA +TTCAGACAGAGGACATTGAAGTTAAAAAGATACGTGGGGTGACAAGAGTATTAGAACCAG +TTAAGCTATTAAAAAGTTGGGTTTCTAAAGGTCTTGCTATAGACAAAGTATACAATCCCA +TTGGGATAATCCTAATGGCAAGATACATGTCAAAAACATACAATTTCAGTTCAACACCTC +TTGCACTACTAAACCCATATGACTTGACAGAGCTTGAAAGTGTTGTAAAGGGATGGGGAG +AAACTGTAAATGATCGATTTAAAGATTTAGATGTTGAGGCACAAGCTGTTGTTAAAGAGA +AAGGTGTACAACCAGAAGATGTACTCCCTGATTCATTATTCTCTTTCAGGCATGTTGATG +TTCTGCTGCGAAGGTTGTTCCCGCGTGACCCTGTCTCAACAT +>OQ092243 +AGTTTAGAAAAATGGAAAAATATAGAGAGATTCATCAGAGAGTTAGGGAACTTGCTCCTG +GAAGTGCATCAGCATTAGAGTGTATGGATTTGCTTGATAGACTTTATGCTGTAAGACATG +ACTTGGTTGATCAGATGATAAAGCATGATTGGTCAGACAATAAGGATATTGAACGCCCTA +TAGGCCAGGTTCTTCTTATGGCAGGCATACCAAATGACATTATACAAGGCATGGAAAAAA +AGATAATACCAAATAGTCCCACAGGCCAGGTTCTAAAGAGCTTTTTTAGGATGACACCTG +ACAATTTCAAAATAACAGGAAATTTAATTGAGTTCATAGAGGTCACCGTTACAGCAGATG +TATCTCGGGGGATTAGAGAAAAGAAGATAAAGTATGAAGAAGGTCTCAAATTTGTTGAAA +GTCTACTTGAAACTGAAGCACGGAAAGGTAACCTAACACAAGTATACAGGATAACTTTCT +CTGTGGTGGCAGTCAAGACTGATGGATCAAATATTTCCACACAATGGCCCAGTCGAAGAA +ATGATGGTGTTGTACAGCACATGCGCTTAGTCCAGGCTGACATAAACTATGTTCGAGAAC +ACCTAATTAGAGTTGATGAGAGGGCATCCCTTGAGGCAATGTTCAACTTGAAATTTCATG +TCTCTGGACCAAAGTTGAGGTATTTTAATGTTCCTGATTATAGGCCACAACAACTTTGTA +ATCCTAGGATAGACAACCTTATACATTATTGCAAGAATTGGTTAACAGAAGAACATAAAT +TTGTATTCAGGGAGGTTACAGGGGCTGCTGTGATCCATACATTTGAAGAGCATGAGCAGG +TGCATTTGAATAAGTATAATGAGTCGAGGAAGCCTCGAAATTTTTTACTAATTCAATTAA +CAGTACAAGGGGCCTACCTCCCTTCTACAATAAGTTCTGACCAGTGTGATACAAGGATAG +GTTGTTTAGAGATATCAAAAAACCAACCTGAGACACCTATTCAGATGCTTGCTTTAGATA +TAGCATTTAAATATTTAAGTCTTACAAAGGATGAACTCATAAATTTTTATAGTCCTAGGG +TGCACTTTCAAGCAAGTTCAAATGTAAAAGAACCAGGAACAATAAAATTAGGCCTGTCTC +AATTGAATCCGTTATCTAAATCAGTATTAGATAATGTTGGTAAACATAAAAAAGATAAGG +GCCTATTTGGTGAAGTCATTGAAAGCATCAATATTGCTAGTCAAATACAAGTTAATGCTT +GTGCTAAAGTTGTGGAGCAGATTCTTTCAAATTTAGAAATTAACATCGGGGAAACAAACA +CAGGTATGCCATCCCCACATAAAACCACAGGTGTAGATGAGTTGCTCAATAAGTTCTATG +ATAATGAAATCGGTAAGTATATGTTATCCATTCTCAGAAAAACAGCAGCCTGGCATATTG +GTCATCTTGTTAGGGACATCACAGAAAGTCTTATTGCTCATTCAGGGTTGCGTAGATCTA +AATACTGGTCGGTTCATGCATATGATCATGGAAATGTTATCTTATTTATCTTACCATCAA +AGTCATTGGAGGTGGTAGGTTCATACATAAGATATTTTACTGTCTTTAAGGATGGTATAG +GTCTAGTTGATTCAGACAATATTGACTCTAGAGTAGATATTGATGGGGTTGTATGGTGTT +ATTCAAAAGTAATGAGTATTGATTTAAACCGATTATTGGCCCTTAATATAGCATTTGAAA +AATCTCTCCTAGCGACAGCAACATGGTTTCAGTATTATACAGAGGATCAAGGACACTTTC +CCCTACAGCATGCATTGAGATCCGTGTTTTCTTTTCATCTTCTACTATGTATGTCTCAAA +AGATGAAACTGTGTGCGATATTTGATAACTTAAGGTACTTAATACCATCTGTGACATCTT +TGTATTCAGGTTACGAATTACTAATTGAGAAGTTTTTTGAAAGACCATTTAAGAGCTCAT +TAGATGTATACCTATATTCAATAATAAAGTCTTTGCTAATAAGCCTTGCACAAAACAATA +AAGTCCGGTTCTATTCTAAAGTGAGACTGCTGGGTCTAACAGTTGATCATTCTACTGTTG +GTGCAAGTGGAGTGTATCCCTCTTTAATGTCCAGAGTTGTTTATAAGCATTATAGGAGTC +TGATATCAGAAGCCACAACCTGTTTTTTCTTATTTGAAAAAGGGCTTCATGGAAATCTCC +CGGAGGAAGCAAAAATACACTTGGAGACTATTGAATGGGCAAGAAAGTTTCAGGCCAAAG +AAGCAAAATATGGGGATATCCTTCTAAAGGAAGGCTATACAATAGAGTCAGTAATAAATG +GAGAAGTGATAGTAGAACAACAGCTATTTTGTCAAGAGGTGTCAGAATTAAGTGCACAGG +AGCTTAATAAATATTTGCAGGCTAAATCACAAGTCTTATGTGCCAACATCATGAACAAAC +ATTGGGACAAGCCTTATTTTAGTCAAACCCGTAATATCAGTCTAAAAGGCATGTCTGGTG +CCCAGCAAGAAGATGGTCATCTAGCTGCTAGTGTCACTTTAATAGAGGCAATACGGTTCT +TGAATAGGTCACAGACTAACCCAAATGTTATTGATATGTATGAACAGACAAAACATAGCA +AGGCTCAAGCTAGGATAGTTAGGAAATATCAAAGGACAGAAGCAGATAGAGGGTTTTTTA +TAACAACACTACCAACAAGGGTAAGGTTGGAGATAATTGAAGATTATTTTGATGCAATAG +CAAAGGTTGTCCCTGAAGAATATATATCTTATGGTGGGGATAAAAAAATATTAAATATAC +AGAATGCTCTAGAAAAGGCACTTAGGTGGGCATCAGGTATGTCTGAAATAACCACTAGTA +CAGGCAAAGTGATCAAATTTAAGCGTAAACTAATGTATGTTAGTGCTGATGCTACAAAAT +GGTCACCTGGGGATAATTCGGCAAAGTTTAGGAGATTCACACAGGCAATTTATGATGGTT +TGTCTGACAATAAACTAAAGTGTTGTGTTGTTGATGCTATAAGAAATATATATGAAACAG +AGTTTTTTATGTCCCGGAAGCTACATCGATATATTGATAGCATGGATGAGCATTCAGATG +CTGTTAACGATTTTTTAGCATTCTTTTCTGGTGGCGTTTCTGCTGCTGTTAAAGGTAATT +GGTTGCAGGGTAATCTAAATAAATGTTCATCACTATATGGTGCTGCAATATCTCTCCTGT +TTAGAGAGGTGTGGAAGCAGCTGTTTCCAGAATTAGAATGCTTTTTCGAATTTGCTCACC +ACTCAGATGATGCATTATTTATATATGGTTATCTGGAACCTGAGGATGATGGAACAGATT +GGTTTCTCTATGTATCTCAACAAATACAGGCAGGAAATTATCACTGGCATGCAATTAACC +AAGAAATGTGGAAAAGTATGTTTAACCTACACGAGCATCTTCTTCTAATGGGTTCCATTA +AAGTTTCACCTAAGAAAACAACTGTTTCACCAACAAATGCTGAATTTTTATCCACATTCT +TCGAAGGTTGTGCTGTATCAATACCATTTGTTAAGATTTTGCTAGGTTCATTATCAGATT +TGCCTGGTTTAGGTTTTTTTGATGATCTAGCTGCTGCACAAAGTAGGTGTGTAAAGGCAT +TAGACTTAGGAGCATGCCCTCAGCTTGCTCAATTAGCCATAGTGCTTTGTACAAGTAAAG +TAGAGAGATTGTATGGGACTGCTGATGGTATGGTTAACTCACCTACAGCCTTTTTAAAAG +TACAGAAGTCACATGTCCCAATACCACTTGGGGGTGATGGATCCATGTCTATAATGGAAC +TAGCTACAGCGGGTTTCGGTATGGCTGATAAGAACATATTAAAGAATGCATTTATCTCAT +ATAAACACACTCGTCGAGATGGTGATAGGTACATTTTAGGTCTTTTTAAGTTCTTAATGT +CATTAAGTGAAGATGTGTTTCAACATGATAGGCTTGGTGAATTCAGCTTTGTAGGTAAAG +TCCAATGGAAGGTGTTTACTCCCAAAGCAGAGTTTGAGTTCCATGATCAATTTTCACATA +GTTACTTAGGGGACTGGACAAAACAACACCCAGTATATGACTATATAATCCCAAGAAATA +GGGATAATTTACTTGTTTATCTTGTGAGGAAGTTAAATGATCCTAGCATTATTACAGCAA +TGACAATGCAGTCTCCACTACAACTTCGATTCCGTATGCAGGCGAAACAGCACATGAAAG +TATGTAGGTATGAAGGTGAATGGGTCACGTTTAGGGAAATACTGGCAGCAGCTGACAGCT +TTGCCACAGTTTATCAACCAAGTGAGAGAGATATGGATTTGTTCAATACACTGGTGAGCT +GTACATTCTCAAAGGAATATGCATGGAAGGACTTTCTAAATGAAGTACGATGCGAGGTAT +TAACAACAAGGCATGTGCATAGGCCGAAAATTGCAAGAACATTCACTGTCAGGGAAAAAG +ATCAGGCAATCCAAAATCCCATTAATTCAGTGATAGGCTATAAGTATGCGATGACTGTTG +ATGAAATCAGTGATGTTCTAGATAGTGCATTCTTCCCTGAATCCTTGTCAGCTGACTTGC +AGGTTATGAAAGATGGGGTTTATCGAGAGCTTGGATTGGATATAAGCTCTCCAGAGGTCT +TAAAGCGCATAGCTCCATTACTATATAAAGCTGGGCGATCACGTGTGGTAATAGTTGAAG +GAAATGTTGAAGGCACAGCCGAGTCAATTTGCAGTTACTGGCTAAAGGCCATGTCATTAA +TTAAGACAATTAGGGTTCGACCAAAGAAAGAGGTTTTGAAAGCTATGTCTTTGTATAGCG +TTAAAGAAAATATAGGCCTACAAGATGATATTGCGGCTACACGATTGTGTATAGAGATTT +GGCGATGGTGTAAGGCTAATGACCAAGATGTTAGAGAGTGGTTAACATCGCTGTATTTTG +AGAAACAAACACTCATGGATTGGGTTGAAAGGTTCAGGAGAAAGGGGGTTGTTCCTATTG +ACCCTGAAATTCAATGCATTGGCTTATTGTTATATGATGTTCTAGGATATAAGAGTGTTT +TACAAATGCAAGCAAACCGTAGAGCTTATTCCGGCAAACAATATGATGCATATTGTGTTC +AAACATATAATGAAGAAACAAAGTTGTATGAAGGTGACCTCCGTGTAACCTTTAACTTTG +GTTTGGATTGTGCACGACTTGAGGTGTTTTGGGATAAGAAGGAATACATCCTAGAAACTT +CTATTACCCAAAGACATGTCTTGAGGCTTCTGATGGAAGAAGTATCTCAGGAGTTAGTTC +GATGTGGTATGAGATTCAAAACAGAGCAAGTCAATCAAACAAGAAGTTTAGTGTTATTTA +AAACAGAATCTGGATTTGAATGGGGAAAACCAAATGTCCCCTGCATTGTGTATAAGCATT +GTGTATTACGGACAGGTCTACGCACGAAACAGCCAATTAATAAAGAGTTCATGATTAATG +TCCAATCTGATGGATTCCGAGCAATAGCTCAAATGGATATCGAAAGTCCTAGATTTTTAT +TAGCCCATGCATATCATACGTTGCGTGACATTCGCTATCAAGCTGTTCAGGCAGTGGGAA +ATGTTTGGTTCAGGACGGAGCAGCATAAACTTTTTATTAATCCAATAATTTCTACAGGCT +TATTAGAAAACTTTATGAAGGGCTTGCCTGCAGCTATACCTCCTGCAGCATACTCATTAA +TAATGAATAAGGCTAAAATATCTGTAGATTTATTCATGTTTAATGAACTATTAGCTCTTA +TTAATAAAAATAACATCCTCAATTTAGATGGGATCGAAGAAACATCTGAGGGTTATAGTA +CAGTTACATCCATGTCAAGTAAACAATGGTCTGAAGAGATGAGTTTAATGTCAGAAGATG +ATATAGATGACATGGAAGATTTCACAATAGCACTGGATGATATTGACTTTGAACAGATTA +ATCTTGAGGAGGACATACAGCACTTTCTCCAGGATGAATCAGCTTATGTTGGTGATTTGC +TAATTCAAACTGAAGATATTGAGGTTAAAAGGATACGTGGGGTCACTAGGGTTTTAGAAC +CTGTGCGGTTATTAAAAAGTTGGGTGTCAAAGGGCTTAGCGATTGATAAAGTCTACAACC +CTGTTGGGATAATTCTTATGGCTAGATATATGTCAAAAACATATAACTTTAACTCAACAC +CCTTAGCATTATTAAATCCTTATGATCTCACAGAGTTAGAAAGTGTAGTTAAGGGCTGGG +GTGAGACAGTCAATGATAGATTTAAAGAATTAGATACTGAGGCACAAACAGTTGTAAAAG +AGAAAGGTGTCCAACCTGAGGATGTCCTTCCTGACTCTTTATTTTCATTTAGGCATGTAG +ATGTTCTCTTGCGTAGGCTTTTTCCACGTGATCCTGTGTCTAAGTTTTATTGAACAGAAT +TCTTATCTTGTTTATCCATTATGTAATGTTTAGTGTTCTTTTCCCGGAGCGGGTCGCA +>PP003837 +AGTAGACTCCGGGATAGAAAAAGTTAAAAAAATGGAAAAGTACAGAGAGATTCATCAAAG +GGTTAGGGAGTTGGCACCAGGAAGTGCTTCAGCATTGGAGTGTATAGACCTATTGGACAG +GCTTTATGCTGTAAGACATGACCTGGTTGATCAGATGATAAAACATGATTGGTCTGACAA +TAAGGACATAGAACGCCCTATAGGTCAAGTCCTCCTTATGGCCGGCATACCTAATGATGT +TATACAAGGTATGGAGAAGAAGATAATCCCAAACAGTCCTACAGGTCAGATCCTTAAAAG +TTTCTTCAGAATGACTCCTGATAATTTCAAAATAACAGGAAACCTCATTGAGTTTATAGA +GGTTACTGTTACAGCTGATGTGTCACGAGGGATCCGTGAAAAGAAGTTGAAATATGAGGA +AGGTCTTAAGTTTGTTGAGAGTCTACTTGAGGTTGAGGCTAGGAAAGGCAATCTGACACA +GGCATATAGGATAACATTCTCAGTAGTGGCAGTTAAAACAGATGGGTCTAATATTTCTAC +ACAGTGGCCTAGTCGTAGAAATGATGGTGTTGTTCAGCACATGCGCCTAGTCCAGGCTGA +CATTAATTATGTGCGGGAACACCTGATAAAGACAGATGAGAGGGCATCCCTAGAGGCAAT +GTTCAATTTAAAATTTCATGTTTCAGGTCCCAAGCTAAGGTATTTTAATATCCCTGATTA +TAGGCCCCAGCAACTTTGTGAGCCTAAGATTGATAATCTCATACAGTATTGCAAAAATTG +GTTGACAGAAGAGCATAGATTTGTATTTAAAGAGGTAACTGGGTCCAGCGTCATTCAAGC +CTTTGAAGGACATGAGAAGATGCACTTGGAGAGGTATAATGAGTCAAGAAAGCCTAGAAA +TTTTTTACTGTTACAGCTCACAATACAAGGGGCCTACCTCCCTTCCACAATTAGTTCTGA +CCAGTGTGATACAAGGATAGGCTGCCTAGAGATATCAAAGAATCAACCTGAAACTCCCAT +TCAAATGCTTGCTCTAGATATTGCTTATAAATACTTGAGTCTTACTAAAGATGAACTTGT +GAACTTCTATAGCCCTAAAGTACATTTCCAGGCAAGCCAAAATGTCAAGGAACCAGGTAC +AATAAAGCTAGGTCTCTCACAGTTAAACCCATTGTCAAAGTCGATTTTAGATAATGTTGG +TAAGCACAAAAAGGATAAAGGACTTTTTGGTGAAATCATAGAGAGTATAAACATAGCTAG +TCAGATACAAGTTAATGCATGTGCTAAAGTTGTAGAGCAGATCTTATCAAATTTGGAAAT +AAATGTTGGGGAGACAAATACAGGCATGGCATCCCCACATAAGACAACAGGGGTTGATGA +ATTGTTGAACAAGTTCTATGACAATGAGTTGGGGAAGTATATGTTGTCAATACTAAGGAA +AACAGCAGCCTGGCATATAGGCCACCTTGTTAGAGATATCACAGAGAGCCTTATCGCACA +TGCAGGCTTGCGTAGGTCCAAGTATTGGTCGGTGCATGCATATGACCATGGTAATGTGAT +ACTTTTTATATTGCCTTCAAAGTCATTGGAAGTTGTTGGTTCTTACATAAGATACTTCAC +TGTATTTAAGGATGGTATAGGTCTAGTTGACTCTGATAATATTGACTCTAAGGCTGATAT +TGACGGTGTGATATGGTGTTATTCTAAGGTGATGAGTATAGATTTAAATAGACTCTTGGC +ATTAAACATAGCATTTGAGAAGTCACTCCTTGCAACTGCTACATGGTTTCAATATTATGC +AGAAGACCAGGGACACTTTCCACTACAGCATGCACTTAGATCTGTCTTTTCCTTTCATTT +CTTATTATGCATGTCACAGAAGATGAAGCTTTGTGCAATATTTGATAACTTGAGGTACCT +TATACCATCTGTCACATCTCTTTATTCTGGTTATGAACTGTTGATTGAGAAGTTTTCTGA +AAGGCCATTCAAGAGTTCTTTGGATGTCTATTTATACTCTATAATAAAATCATTATTAAT +AAGTCTTGCACAGAACAATAAGGTACGGTTTTATTCAAAAGTGAGATTATTAGGTTTAAC +AGTTGATCATTCTACTGTTGGTGCAAGTGGGGTGTATCCTTCACTTATGTCAAGAGTTGT +TTATAAACACTATCGGAGTTTGATTTCTGAAGCAACAACCTGTTTTTTTCTGTTTGAAAA +GGGTCTTCATGGTAATCTTCCTGAGGAAGCAAAGATACACTTAGAAACCATTGAATGGGC +AAGAAAATTTCAGGAAAAGGAGGATAAATACGGTGATATACTTTTAAAAGAAGGTTACAC +AATAGAATCAGTCACAAGTGGGGAAGTAAAGGTAGAGCAGCAACTTTTCTGTCAAGAAGT +TTCAGAGTTAAGTGCTCAAGAGCTTAACAAGTACCTACAAGCTAAATCACAGGTGTTGTG +TGCTAATATTATGAATAAGCACTGGGATAAACCTTATTTTAGCCAAACCCGCAATATAAG +CTTAAAAGGAATGTCAGGAACACAGCAAGAAGATGGTCATTTATCTGCAAGTGTGACTTT +AATAGAGGCAATAAGGTTTTTAAATAGATCACAAACAAACCCAAATGTCATAGATATGTA +TGAGCAGACAAAGCACAACAAGGCACAGGCTCGAATTGTTAGAAAATATCAAAGAACAGA +AGCCGACAGGGGATTTTTTATCACAACATTACCCACGAGAGTCAGATTGGAGATCATTGA +GGATTATTTCGATGCAATAGCAAAAGTTGTCCCTGAGGAATATATCTCTTATGGCGGAGA +TAAGAAGATCTTAAATATACAGAATGCACTTGAAAAAGCACTGAGGTGGGCTTCAGGGAT +GTCAGAAATTACCACCAGCACAGGTAAAGTCATTAAATTTAAACGCAAGTTGATGTATGT +CAGTGCAGACGCAACAAAGTGGTCACCTGGTGATAACTCAGCTAAATTCAGACGATTCAC +ACAAGCAATATATGATGGGCTTTCTGATGATAAGTTAAAATGTTGTGTTGTAGATGCCAT +AAGGAATATATATGAGACAGAATTTTTTATGTCAAGAAAACTCCACCGATATATAGATAG +CATGGATGAACACTCAGATGCTGTGAAGGATTTCTTAGCTTTCTTTTCTGGAGGAGTTTC +TGCAGTTGTCAAAGGGAACTGGCTACAAGGAAATCTTAATAAATGCTCATCTTTGTTTGG +TGCAGCTGTATCATTATTATTTAGAGAAGTTTGGAAGCAATTGTTTCCAGAGTTAGATTG +CTTTTTTGAGTTTGCCCATCATTCTGATGATGCCTTATTTATATATGGATATTTAGAACC +AGAAGATGATGGCACAGATTGGTTTTTGTATGTCTCTCAACAAATACAAGCTGGCAATTA +TCACTGGCATGCTATTAACCAAGAGATGTGGAAAAGTATGTTTAACCTGCATGAGCATTT +ACTATTAATGGGTTCTATCAAGGTTTCTCCAAAAAAGACAACTGTTTCACCGACAAATGC +TGAATTCCTATCAACATTCTTTGAAGGGTGTGCTGTATCAATACCATTTGTGAAAATATT +GTTGGGTTCACTATCAGACTTACCTGGCCTTGGGTTCTTTGATGACCTGGCAGCTGCACA +GAGCAGATGTGTTAAATCACTAGATCTAGGTGCGTGCCCGCAGCTTGCACAATTGGCTAT +AGTCTTGTGTACTAGTAAAGTTGAGAGGCTGTACGGAACAGCTGATGGTATGGTAAACTC +ACCAACAGCATTCTTAAAAGTACAAAAATCACACGTCCCAATACCATTAGGAGGGGATGG +GTCCATGTCTATAATGGAGTTAGCCACAGCAGGTTTCGGTATGGCTGATAAGAACATATT +AAAGAATGCTTTCATTTCTTTTAGACACACTCGCAGGGATGGTGACAGGTATGTTTTAGG +CCTGTTTAAGTTCTTGATGTCATTAAGTGAAGATGTATTTCAGCATGATAGGTTAGGTGA +GTTTAGCTTTGTGGGCAAAGTGCAATGGAAAGTATTCACTCCAAAGGCTGAATTTGAATT +CCATGATCAATTTTCACACAGTTATTTAGGTGATTGGACACGTCAACATCCAGTATATGA +TTATATCATTCCAAGGAATAGAGACAACTTACTTGTATATCTTGTGAGAAAGTTAAATGA +TCCTAGTATTATAACAGCAATGACTATGCAATCCCCATTACAACTCAGATTTCGCATGCA +GGCAAAACAACATATGAAAGTATGTCGGTATGAAGGTGAATGGGTCACATTTAGAGAAAT +CCTTGCAGCAGCTGATAGTTTTGCTACAGCATATCAGCCAAGTGAAAGGGACATGGACTT +ATTCAACACCTTGGTGAGTTGTACATTTTCAAAGGAATATGCATGGAAAGATTTTCTGAA +TGAGGTGCGATGTGAAGTCTTGACAACTAGACATGTACATAGACCAAAGATTGCGCGGAC +ATTTACTGTTAGAGAAAAGGATCAGGCAATCCAAAATCCAATCAATTCAGTGATTGGATA +CAAGTATGCAATGACTGTTGATGAAATAAGTGATGTTTTAGACAGTGCATTCTTCCCTGA +ATCACTTTCAGCAGATTTACAGGTGATGAAAGAAGGAGTATACCGGGAACTTGGGTTAGA +TATCAGTTCCCCTGATGTTTTAAGGCGCATTGCACCTTTATTATATAAGGCAGGGAGATC +ACGTGTTGTGATAGTGGAAGGAAACGTAGAAGGTACAGCAGAATCAATCTGTAGTTATTG +GCTTAAAGCAATGTCATTGATAAAAACCGTAAGGGTGAGGCCCAAAAAGGAAGTCTTAAA +GGCAATGTCATTGTATAGCATTAAAGAGAATATAGGCTTACAGGATGATATTGCAGCTAC +ACGATTATGTATTGAAGTCTGGAGATGGTGTAAAGCTAATGAACAAGATGTAAGAGAATG +GCTTACATCATTATATTTTGAGAAGCAAACACTTATGGATTGGGTAGAACGTTTCAGACG +GAAAGGGGTAGTCCCTATAGACCCTGAGATACAGTGTATTGGTTTATTGTTATATGATGT +TTTAGGATATAAAAGTGTTTTACAGATGCAGGCAAATAGACGGGCTTATTCAGGAAAACA +GTATGATGCTTATTGTGTTCAAACATACAATGAAGAAACTAAGTTATATGAAGGAGACCT +ACGTGTTACATTCAATTTCGGTTTGGATTGTGCTAGGCTTGAGATCTTCTGGGATAAGAA +AGAATATATACTAGAAACCTCCATTACTCAGAGGCACGTGTTACGTCTATTGATGGAAGA +AGTGTCTCAGGAGTTAGTCCGTTGCGGGATGCGATTTAAAACAGAACAGGTAAACCAGAC +ACGAAGCCTAGTGTTATTCAAGACAGAGGCTGGTTTTGAGTGGGGAAAACCAAACGTACC +ATGTATAGTCTATAAGCATTGTGTGTTACGAACAGGGTTGAGGACCAAACAGCCTATCAA +TAAAGAGTTTATGATTACTGTTCAGGCCGATGGTTTCCGTGCAATAGCACAGATGGACAT +GGAAAGTCCTAGATTTTTACTTGCACATGCTTATCATACATTACGTGATATTCGCTACCA +GGCTGTTCAGGCTGTTGGTAATGTTTGGTTTAAAACAGAACAACATAAACTATTTGTAAA +TCCGATAATCTCCTCTGGACTTCTAGAGAATTTCATGAAAGGTTTACCTGCTGCCATACC +CCCTGCAGCTTATTCTTTAATTATGAATAAGGCCAAAATATCAGTAGACTTGTTCATGTT +TAATGAGCTACTAGCACTTATAAATAAAAATAATATTCTAAACTTGGATGGGATTGAGGA +GACATCTGAAGGTTATAGCACAGTAACATCTATGTCTAGTAAACAGTGGTCTGAAGAAAT +GAGTTTAATGTCAGATGATGACATTGACGATATGGAAGACTTCACAATAGCCTTGGATGA +TATTGATTTTGAGCAAATAAATCTTGAAGAGGATATCCAACATTTCCTCCAGGATGAGTC +TGCTTATGTAGGAGACTTGTTAATTCAAACAGAAGACATTGAAGTAAAGAAAATACGTGG +TGTAACTAGAGTATTAGAACCTGTACGTTTATTAAAAAGTTGGGTTTCGAAGGGTCTAGC +TATCGACAAGGTATACAATCCTGTAGGGATAATTCTTATGGCAAGGTATATGTCAAAGAC +ATATAATTTTAATTCAACACCATTGGCCCTACTAAACCCGTATGACCTGACAGAGTTAGA +GAGTGTTGTTAAAGGTTGGGGAGAAACAGTCAATGATAGGTTCCAGGAGTTAGACGTTGA +GGCTCAGACAGTTGTGAGGGAGAAGGGTGTTCAGCCTGAGGATGTTTTACCAGATTCTTT +GTTCTCTTTTAGACATGTGGATGTTCTCTTGCGTAGGCTTTTTCCCCGTGATCCTGTGTC +CACATTCTATTAAGTGGATTTTATATCTTATTTATACATCATGTAATATTTAGTGTTCTT +TTCCCGTGATCCTGTGTCCACATTCTATTAAGTGGATTTTATATCTT +>PP151170 +CTCCGGGATAGAAAAAGTTAGAAAAATGGAAAAGTACAGAGAGATTCATCAGAGGGTTAG +GGAGCTGGCACCAGGGAGTGCATCAGCATTAGAGTGTATAGATTTGCTGGATAGGCTCTA +TGCTGTGAGACATGATTTAGTTGATCAAATGATCAAACATGATTGGTCTGACAACAAAGA +CATTGAACGCCCAATAGGCCAAGTCCTTCTCATGGCAGGGATCCCAAATGACATCATACA +AGGTATGGAGAAAAAGATAATTCCAAATAGCCCAACAGGCCAAATTCTAAAAAGTTTCTT +TCGAATGACCCCTGATAATTTCAAGATAACAGGGAATCTCATTGAGTTTATTGAGGTTAC +TGTCACAGCTGATGTATCACGAGGGATTCGAGAGAAAAAGATGAAATATGAAGAAGGCCT +TAAATTTGTTGAGAGTCTACTCGAAATTGAAACAAGGAAAGGAAATTTAACACAGGTTTA +TCGGATTACCTTCTCAGTAGTAGCAGTCAAAACAGATGGATCAAATATATCAACTCAATG +GCCAAGTCGTAGAAATGACGGTGTTGTCCAACACATGCGCCTTGTCCAGGCTGATATTAA +TTATGTGAGAGAACATTTGATTAAAACAGATGAAAGGGCATCATTAGAGGCTATGTTTAA +TTTAAAGTTTCATGTCTCAGGTCCAAAGCTAAGGTATTTTAATATTCCTGATTATAGACC +ACAGCAGCTCTGTGAGCCTAAAATTGATAATCTCATACATTATTGTAAAAATTGGTTGAC +AGAAGAGCACAAGTTTGTATTCAAGGAAGTCACAGGCACAAATGTTATTCAGGCATTTGA +AGGGCATGAGCAGGTACATATGGAGAAGTACAATGAATCGAGAAAACCCCGTAATTTTTT +ACTCCTACAGCTAACTGTTCAAGGAGCTTATCTTCCTTCGACAATTAGTTCTGATCAGTG +TGATACAAGGATAGGCTGTTTAGAAATATCAAAGAATCAACCTGAGACACCTATTCAAAT +GCTTGCTTTAGATATTGCTTTTAAGTATTTGAGTCTTACCAAAGATGAGCTTGTTAACTT +CTATAGTCCCAAAGTGCACTTCCAGGCAAGCCCTAATGTGAAGGAACCAGGAACTATGAA +ATTAGGTCTATCTCAGCTGAACCCATTGTCAAAGTCAATACTCGATAATGTAGGGAAGCA +TAAAAAGGACAAAGGGCTATTTGGTGAGGTCATTGAGAGTATCAATATAGCTAGTCAAAT +ACAAGTTAATGCATGTGCTAAGGTCGTAGAGCAAATTCTCTCTAACCTTGAAATTAATAT +AGGGGAAATAAATACAGGGATGCCTGCACCGCATAAGACTACAGGAGTTGATGAACTGCT +TAATAAATTTTATGATAATGAACTAGGAAAATATATGCTATCTATATTGAGAAAAACAGC +TGCTTGGCATATTGGTCATTTAGTCAGGGATATAACTGAGAGCCTTATTGCACATGCAGG +GTTGCGTAGATCAAAATACTGGTCAGTTCATGCATATGATCATGGGAATGTTATACTGTT +TATCTTACCTTCAAAGTCTTTAGAGGTTGTTGGTTCTTATATTAGGTACTTTACTGTTTT +CAAAGATGGTATTGGTTTAGTTGATTCAGACAACATTGACTCCAAAGCAGATATTGATGG +GGTTATATGGTGCTATTCCAAGGTGATGAGTATTGATCTGAATCGATTACTAGCTCTGAA +TATAGCATTTGAAAAATCACTTCTAGCAACTGCAACATGGTTTCAGTACTATACAGAAGA +TCAAGGGCATTTTCCCTTACAGCATGCGTTACGATCAGTGTTTTCTTTCCATTTTTTATT +ATGTATGTCACAGAAGATGAAACTTTGTGCAATATTCGATAATCTAAGATACCTAATTCC +ATCTGTAACATCGCTTTACTCTGGCTATGAACTATTAATTGAAAAATTCTTTGAAAGGCC +ATTCAAAAGTTCCCTAGATGTATACCTTTATTCCATTATTAAATCACTGCTAATTAGCTT +GGCTCAAAATAATAAGGTACGGTTTTATTCTAAGGTACGGCTCTTAGGCTTAACGGTTGA +TCACTCAACTGTTGGTGCAAGTGGGGTATATCCATCTTTGATGTCAAGGGTTGTTTACAA +ACATTATCGGAGTTTAATTTCAGAAGCAACAACCTGTTTTTTCCTGTTTGAGAAGGGTCT +TCATGGAAATTTACCTGAGGAAGCAAAAATCCATTTAGAGACCATAGAATGGGCGCGGAA +ATTCCAGGAAAAAGAAGCTAAATATGGTGATATTCTTTTGAAAGAAGGCTATACAATTGA +ATCAATAACAAATGGGGAAGTGATGGTTGAACAGCAATTATTCTGTCAAGAGGTATCAGA +GCTCTGTGCACAAGAACTCAATAAATATTTACAGGCAAAATCACAAGTTTTGTGTGCTAA +TATCATGAATAAACACTGGGATAAACCCTATTTCAGTCAAACACGCAATATTAGCCTAAA +AGGTATGTCTGGGGCACAGCAAGAAGATGGCCATTTAGCTGCCAGTGTTACCTTAATTGA +GGCAATTCGATTCCTAAATCGATCACAAACAAATCCCAATGTTATAGATATGTATGAACA +AACAAAACATAGTAAGGCACAGGCCAGGATAGTCAGGAAATACCAAAGGACAGAAGCAGA +TAGGGGATTCTTTATAACAACACTACCGACAAGAGTCAGATTAGAGATAATTGAGGACTA +TTTTGATGCAATAGCAAAGGTAGTTCCTGAGGAGTATATATCCTATGGTGGTGATAAAAA +GATATTAAATATTCAGAATGCATTAGAGAAGGCACTTAGATGGGCATCAGGGATGTCAGA +AATAATAACAAGTACAGGTAAAGTTATTAAATTTAAACGTAAATTAATGTATGTGAGTGC +TGATGCTACAAAATGGTCACCAGGAGATAATTCAGCCAAGTTTAGGAGGTTTACACAAGC +TATTTATGATGGGCTCTCTGATAATAAGTTGAAATGTTGTGTTGTAGATGCCATTAGAAA +TATTTATGAAACAGAGTTTTTTATGTCTAGAAAATTGCATAGATATATAGATAGTATGGA +TGAGCACTCAGATGCTGTAAAGGACTTTTTGGCATTCTTTTCTGGAGGTGTGTCTGCTGC +AGTTAAGGGAAACTGGCTTCAAGGGAATTTGAACAAATGTTCATCATTATTTGGTGCTGC +CATTTCATTATTGTTTAGGGAAGTCTGGAAGCAGTTGTTCCCTGAGCTAGAATGCTTTTT +TGAGTTTGCCCACCATTCTGATGATGCTTTATTTATATATGGTTATTTAGAACCTGAAGA +TGATGGCACGGACTGGTTTTTATATGTGTCACAACAAATACAAGCTGGAAATTATCACTG +GCATGCAATAAATCAGGAAATGTGGAAGAGCATGTTTAATTTACATGAGCACCTACTCTT +AATGGGCTCAATTAAAGTTTCTCCAAAGAAAACTACTGTATCACCTACAAATGCTGAATT +TCTATCTACATTCTTTGAAGGTTGTGCTGTGTCAATACCTTTTGTTAAAATACTTTTAGG +TTCTCTCTCAGACTTGCCTGGTTTAGGCTTTTTTGATGATTTAGCTGCTGCTCAAAGTAG +ATGTGTGAAGTCATTAGATCTAGGTGCATGTCCACAACTTGCACAATTAGCCATAGTATT +ATGTACTAGTAAAGTAGAAAGATTATACGGGACAGCTGATGGTATGGTCAATTCCCCTAC +AGCCTTTCTAAAGGTACAAAAGTCACATGTGCCTATACCTCTTGGGGGTGATGGCTCTAT +GTCTATTATGGAGCTTGCCACAGCTGGATTTGGGATGGCTGACAAGAACATATTAAAAAA +TGCATTCATATCATATAAACACACTCGAAGAGAAGGTGATCGGTATGTTCTTGGTTTATT +TAAGTTTTTGATGTCATTAAGTGAAGATGTATTTCAGCATGACAGGTTGGGTGAGTTTAG +CTTTGTGGGTAAGGTCCAATGGAAGGTCTTTACCCCTAAGGCAGAGTTTGAATTTCATGA +TCAGTTCTCAAATAGTTATTTGGGAGACTGGACACGGCAGCATCCTGTTTACGACTACAT +AATTCCAAGAAATAGAGACAATTTACTTGTGTATCTTGTACGAAAACTAAATGACCCTAG +CATTATCACAGCAATGACAATGCAGTCTCCGTTACAACTTAGATTCAGAATGCAGGCAAA +GCAGCATATGAAGGTATGCCGTTATGAAGGTGAGTGGGTAACCTTTAGGGAAATTTTAGC +AGCTGCTGACAGCTTTGCTTCAGGTTATCAACCTAGCGAAAGAGACATGGACTTATTTAA +CACCTTGGTTAGCTGTACATTTTCTAAAGAATATGCATGGAAAGACTTTCTAAATGAAGT +AAGGTGTGAAGTCTTAACTACTAGACATGTCCATAGGCCCAAGATTGCGAGGACCTTCAC +TGTTAGGGAAAAGGATCAAGCAATTCAGAATCCAATTAACTCTGTGATAGGATACAAGTA +TGCCATGACAGTGGATGAAATAAGTGATGTTCTTGACAGTTCATTCTTTCCTGAGTCACT +TTCAGCAGATTTGCAAGTTATGAAAGATGGAGTCTATCGAGAATTAGGCTTAGACATTAG +TTCGCCTGATGTATTAAAGCGTATAGCCCCATTACTATACAAAGCTGGGCGGTCACGTGT +AGTTATAGTAGAAGGAAATGTTGAGGGCACAGCTGAATCAATCTGTAGTTATTGGCTAAA +GGCTATGTCATTGATCAAAACGATCAGAGTTAGACCAAAAAAAGAAGTCCTAAAGGCCAT +GTCATTATACAGCATTAAAGAAAACATAGGCCTACAAGATGATATCGCAGCTACACGATT +GTGTATAGAGATTTGGCGATGGTGTAAGGCTAATAATCAGGATGTTAAGGAATGGTTGAC +ATCATTATATTTTGAGAAACAGACATTGATGGATTGGGTTGAGAGGTTTAGGCGAAAAGG +TGTTGTACCTATTGATCCTGAAATTCAATGTATAGGTTTGCTTTTGTATGATGTTTTAGG +GTATAAGAGTGTCTTACAGATGCAAGCAAATAGGAGAGCATACTCAGGTAAGCAATATGA +CGCATATTGTGTCCAAACATATAATGAAGAAACTAAGTTGTATGAGGGTGATTTACGTGT +AACATTTAACTTTGGATTAGACTGTGCCAGACTTGAAGTCTTCTGGGACAAGAGAGAATA +TATTCTTGAGACATCAATCACTCAACGACATGTATTGAGGTTGCTGATGGAAGAAGTATC +ACAGGAGCTTGTTCGATGTGGTATGAGGTTTAAAACAGAGCAGGTAAATCAGACAAGAAG +CTTAGTGTTATTTAAAACTGAAGCTGGTTTTGAGTGGGGAAAGCCGAATGTTCCGTGTAT +AGTATATAAGCATTGTGTTCTACGGACAGGGTTGCGTACAAAGCAACCTATTAATAAAGA +ATTTATGATAAATGTACAAGCAGATGGTTTTCGTGCAATAGCACAAATGGATGTTGAAAG +CCCGCGATTCCTACTAGCACATGCCTATCACACATTGCGTGATATTCGGTATCAAGCTGT +GCAGGCAGTAGGCAATGTCTGGTTCAAAACAGAACAGCATAAGCTATTTATTAATCCAAT +AATTTCATCTGGGCTCTTAGAAAACTTTATGAAAGGTTTACCTGCAGCAATACCCCCAGC +AGCTTATTCATTGATTATGAATAAGGCAAAGATTTCTGTTGACTTATTCATGTTTAATGA +GTTACTTGCCCTCATAAATAAAAATAATATCCTTAATTTAGATGGGATTGAAGAAACATC +AGAAGGCTATAGCACAGTAACATCTATGTCTAGTAAGCAATGGTCAGAGGAAATGAGTCT +TATGTCAGATGATGATATAGATGATATGGAAGATTTCACTATAGCATTAGATGATATTGA +TTTTGAACAGATAAATTTGGAGGAAGATATACAGCACTTTCTTCAGGACGAATCTGCTTA +TGTCGGTGACTTATTAATTCAGACAGAAGATATTGAAGTTAAAAAGATACGTGGTGTTAC +AAGAGTTTTGGAGCCTGTGCGCCTACTTAAAAGTTGGGTTTCTAAAGGCTTGGCTATTGA +CAAAGTTTATAACCCTGTTGGTATAATCCTCATGGCTAGATACATGTCAAAAACATACAA +TTTCAGCACGACACCATTAGCATTACTAAATCCTTATGATTTAACTGAATTGGAAAGTGT +TGTTAAAGGTTGGGGTGAAACAGTGAACGATAGGTTCCAGGAATTGGATTTGGAAGCACA +AACAATTGTTAGAGAGAAAGGTGTGCAACCGGAAGATGTACTTCCAGACTCATTGTTTTC +TTTTCGGCATGTGGATGTTCTGC diff --git a/data_output/nextstrain/orthohantavirus/andv/l/unreleased/tree.json b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/tree.json new file mode 100644 index 000000000..282720abe --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/tree.json @@ -0,0 +1 @@ +{"version": "v2", "meta": {"title": "Andes Virus L Segment (ANDV)", "updated": "2026-05-12", "build_url": "https://github.com/nextstrain/andv", "data_provenance": [{"name": "Pathoplexus", "url": "https://pathoplexus.org/"}], "maintainers": [{"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}], "display_defaults": {"map_triplicate": false, "color_by": "outbreak", "distance_measure": "div"}, "genome_annotations": {"RdRp": {"end": 6497, "seqid": "defaults/l/reference.gb", "start": 36, "strand": "+", "type": "CDS"}, "nuc": {"end": 6562, "start": 1, "strand": "+", "type": "source"}}, "colorings": [{"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "date", "title": "Collection Date", "type": "categorical"}, {"key": "region", "title": "Region", "type": "categorical", "scale": [["Africa", "#CEB541"], ["Europe", "#E39B39"], ["South America", "#E56C2F"]]}, {"key": "country", "title": "Country", "type": "categorical"}, {"key": "division", "title": "Admin Division", "type": "categorical"}, {"key": "host", "title": "Host", "type": "categorical"}, {"key": "abbr_authors", "title": "Authors", "type": "categorical"}, {"key": "dataUseTerms", "title": "Data use terms", "type": "categorical"}, {"key": "restrictedUntil", "title": "Restricted Until", "type": "categorical"}, {"key": "date_released", "title": "Release Date", "type": "categorical"}, {"key": "length", "title": "Length", "type": "continuous"}, {"key": "INSDC_accession", "title": "INSDC Accession", "type": "categorical"}, {"key": "PPX_accession", "title": "Pathoplexus Accession", "type": "categorical"}, {"key": "institution", "title": "Author Affiliations", "type": "categorical"}, {"key": "totalAmbiguousNucs", "title": "Ambiguous Nucleotides", "type": "continuous"}, {"key": "outbreak", "title": "outbreak", "type": "categorical"}], "filters": ["country", "division", 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P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258173.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258173.1"}, "PPX_accession": {"value": "PP_006VZKZ.1", "url": "https://pathoplexus.org/seq/PP_006VZKZ.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6539}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000075", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZWB|Epuyen/18-19_Patient_5_11/26/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZWB", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258184.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258184.1"}, "PPX_accession": {"value": "PP_006VZWB.1", "url": "https://pathoplexus.org/seq/PP_006VZWB.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6542}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000076", "node_attrs": {"div": 0.165386, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZSK|Epuyen/18-19_Patient_28_1/6/19|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZSK", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258180.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258180.1"}, "PPX_accession": {"value": "PP_006VZSK.1", "url": "https://pathoplexus.org/seq/PP_006VZSK.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6532}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.165386, "strain": {"value": "PP_006VZAJ|Epuyen/18-19_Patient_12_12/19/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZAJ", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "INSDC_accession": {"value": "MN258164.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258164.1"}, "PPX_accession": {"value": "PP_006VZAJ.1", "url": "https://pathoplexus.org/seq/PP_006VZAJ.1"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "date_released": {"value": "2020-09-30"}, "host": {"value": "human"}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 6542}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, "root_sequence": {"RdRp": "MEKYREIHQRVRDLAPGTVSALECIDLLDRLYAVRHDLVDQMIKHDWSDNKDVERPIGQVLLMAGIPNDIIQGMEKKIIPNSPSGQVLKSFFRMTPDNYKITGNLIEFIEVTVTADVSRGIREKKIKYEGGLQFVEHLLETESRKGNIPQPYKITFSVVAVKTDGSNISTQWPSRRNDGVVQHMRLVQADINYVREHLIKLDERASLEAMFNLKFHVSGPKLRYFNIPDYRPQQLCEPRIDNLIQYCKNWLTKEHKFVFKEVSGANVIQAFESHEQLHLQKYNESRKPRNFLLLQLTVQGAYLPSTISSDQCNTRIGCLEISKNQPETPVQMLALDISYKYLSLTRDELINYYSPRVHFQSSPNVKEPGTLKLGLSQLNPLSKSILDNVGKHKKDKGLFGEIIDSINVASQIQINACAKIIEQILSNLEINIGEINASMPSPNKTTGVDDLLNKFYDNELGKYMLSILRKTAAWHIGHLVRDITESLIAHAGLRRSKYWSVHAYDHGNVILFILPSKSLEVVGSYIRYFTVFKDGIGLIDADNIDSKAEIDGVTWCYSKVMSIDLNRLLALNIAFEKSLLATATWFQYYTEDQGHFPLQHALRSIFSFHFLLCVSQKMKLCAIFDNLRYLIPSVTSLYSGYELLIEKFFERPFKSSLDVYLYSIIKSLLISLAQNNKVRFYSRVRLLGLTVDHSTVGASGVYPSLMSRVVYKHYRSLISEATTCFFLFEKGLHGNLPEEAKIHLETIEWARKFQEKEKQYGDILLKEGYTIESVINGEVDVEQQLFCQEVSELSAQELNKYLQAKSQVLCANIMNKHWDKPYFSQTRNISLKGMSGALQEDGHLAASVTLIEAIRFLNRSQTNPNVIDMYEQTKQSKAQARIVRKYQRTEADRGFFITTLPTRVRLEIIEDYFDAIAKVVPEEYISYGGDKKVLNIQNALEKALRWASGVSEITTSTGKSIKFKRKLMYVSADATKWSPGDNSAKFRRFTQAIYDGLSDNKLKCCVVDALRNIYETEFFMSRKLHRYIDSMENHSDAVEDFLAFFSNGVSANVKGNWLQGNLNKCSSLFGAAVSLLFREVWKQLFPELECFFEFAHHSDDALFIYGYLEPEDDGTDWFLYVSQQIQAGNFHWHAINQEMWKSMFNLHEHLLLMGSIKVSPKKTTVSPTNAEFLSTFFEGCAVSIPFVKILLGSLSDLPGLGFFDDLAAAQSRCVKSLDLGACPQLAQLAIVLCTSKVERLYGTADGMVNSPTAFLKVNKAHVPVPLGGDGSMSIMELATAGFGMADKNILKNAFISYKHTRRDGDRYVLGLFKFLMSLSEDVFQHDRLGEFSFVGKVQWKVFTPKAEFEFHDQFSHNYLLEWTRQHPVYDYIIPRNRDNLLVYLVRKLNDPSIITAMTMQSPLQLRFRMQAKQHMKVCRYEGEWVTFREVLAAADSFATSYQPTERDMDLFNTLVSCTFSKEYAWKDFLNEVRCEVLTTRHVHRPKIARTFTVREKDQAIQNPINSVIGYKYALTVDEVSDVLDSAFFPESLSADLQVMKDGVYRELGLDISSPEVLKRIAPLLYKAGRSRVVIVEGNVEGTAESICSYWLKTMSLIKTIRVRPKKEVLKAMSLYSVKENIGLQDDIAATRLCIEIWRWCKANEQDVKEWLTSLYFEKQTLMDWVERFRRKGVVPIDPEIQCIGLLLYDVLGYKSVLQMQANRRAYSGKQYDAYCVQTYNEETKLYEGDLRVTFNFGLDCARLEVFWDKKEYILETSITQRHVLRLLMEEVSQELIRCGMRFKTEQVNQTRSLVLFKTEAGFEWGKPNVPCIVYKHCVLRTGLRTKQPINKEFMINVQSDGFRAIAQMDIESPRFLLAHAYHTLRDIRYQAVQAVGNVWFKTEQHKLFINPIISSGLLENFMKGLPAAIPPAAYSLIMNKAKISVDLFMFNELLALINRNNILNLDGIEETSEGYSTVTSMSSKQWSEEMSLMSDDDIDDMEDFTIALDDIDFEQINLEEDIQHFLQDESAYVGDLLIQTEDIEVKKIRGVTRVLEPVKLLKSWVSKGLAIDKVYNPIGIILMARYMSKTYNFSSTPLALLNPYDLTELESVVKGWGETVNDRFKDLDIEAQTVVKEKGVQPEDVLPDSLFSFRHVDVLLRRLFPRDPVSTFY*", "nuc": "TAGTAGTAGACTCCGGGATAGAAAAAGTTAGAAAAATGGAAAAGTATAGAGAGATTCATCAGAGAGTTAGGGACCTTGCACCTGGAACGGTATCAGCATTAGAATGCATAGATCTACTGGATAGGCTCTACGCTGTCAGACATGACCTGGTTGACCAGATGATAAAACATGACTGGTCTGATAATAAAGATGTAGAAAGACCTATAGGTCAAGTTTTACTGATGGCTGGCATACCTAATGATATTATACAAGGCATGGAGAAGAAGATTATACCAAATAGCCCTTCTGGACAAGTATTGAAAAGCTTTTTCCGAATGACACCAGATAATTATAAAATTACAGGTAACTTGATTGAGTTTATTGAAGTGACTGTAACAGCTGATGTGTCACGAGGTATTAGGGAGAAGAAAATAAAGTATGAAGGAGGCCTCCAATTTGTTGAGCACTTACTGGAAACTGAATCAAGGAAGGGTAATATACCGCAACCTTATAAAATAACATTCTCAGTGGTTGCAGTTAAAACAGATGGATCAAACATCTCGACTCAGTGGCCCAGTCGGAGGAACGATGGGGTAGTTCAGCACATGCGTCTAGTCCAAGCTGATATAAATTATGTCAGAGAGCATTTAATAAAGTTAGATGAGAGAGCATCTTTGGAGGCAATGTTTAACTTAAAGTTCCATGTATCAGGCCCTAAACTGAGATACTTTAACATCCCTGATTATAGACCACAGCAGCTATGTGAACCACGGATTGACAACTTAATACAATATTGCAAGAATTGGTTGACAAAAGAACATAAGTTTGTATTCAAAGAAGTCAGTGGAGCTAATGTGATTCAAGCATTTGAGAGTCATGAACAGTTACATTTACAGAAATACAACGAATCACGAAAACCAAGAAATTTTTTACTCTTGCAGCTTACAGTGCAAGGGGCATATCTACCATCAACAATCAGTTCTGACCAGTGCAATACTAGGATTGGGTGTCTAGAAATATCAAAAAACCAACCAGAAACACCAGTACAGATGCTTGCATTGGATATATCTTATAAGTATCTGAGTCTTACAAGGGATGAGTTGATCAATTATTATAGCCCTAGAGTGCACTTTCAATCGAGCCCTAATGTGAAGGAACCAGGGACACTGAAGTTAGGATTATCACAATTAAATCCACTCTCTAAATCAATTCTTGACAATGTTGGAAAGCATAAAAAGGATAAAGGATTATTTGGTGAGATCATAGATAGCATAAATGTGGCAAGTCAAATACAGATCAATGCATGTGCAAAAATAATTGAGCAGATCTTATCAAATCTTGAAATAAACATTGGAGAAATAAATGCTAGTATGCCTTCTCCTAATAAGACAACAGGTGTAGATGACCTGTTAAATAAATTTTATGATAATGAGCTTGGTAAATATATGTTATCCATTCTGAGGAAAACAGCAGCATGGCATATAGGCCATCTAGTCAGAGATATCACAGAAAGTTTAATTGCACATGCTGGGCTGCGCCGTTCTAAATATTGGTCAGTACATGCATATGACCATGGGAATGTAATTTTGTTTATCTTGCCATCAAAGTCACTAGAGGTAGTAGGTTCTTATATAAGGTATTTCACAGTATTTAAAGATGGTATAGGGTTGATAGACGCAGATAATATTGATTCTAAGGCCGAAATTGATGGTGTCACCTGGTGTTATTCTAAGGTCATGAGTATTGATTTAAACAGGTTATTGGCTTTGAACATAGCTTTTGAGAAGTCACTTCTTGCCACGGCTACATGGTTCCAATATTATACTGAAGACCAAGGCCATTTTCCCCTTCAACATGCATTAAGGTCAATCTTTTCTTTCCACTTTTTACTCTGTGTGTCACAAAAGATGAAGCTATGTGCAATATTTGATAACCTTCGTTATCTGATACCATCAGTAACATCTTTGTACTCTGGGTACGAGTTGTTAATAGAAAAATTCTTTGAGAGACCATTTAAGAGTTCACTGGATGTATACCTTTATTCTATCATAAAATCTCTATTAATTAGTTTGGCACAAAATAATAAAGTTCGATTTTACTCAAGAGTTCGTTTGTTAGGATTGACAGTTGATCACTCCACGGTCGGAGCAAGTGGTGTTTACCCCTCTTTAATGTCCCGTGTTGTTTACAAACATTACAGAAGTTTAATCTCTGAAGCTACAACTTGTTTTTTCTTATTTGAAAAGGGTTTGCATGGGAATTTACCAGAAGAGGCTAAAATACATCTTGAAACCATTGAATGGGCTCGGAAGTTCCAGGAGAAAGAAAAACAATATGGTGATATTCTTCTAAAGGAAGGCTATACAATTGAATCTGTAATCAATGGAGAAGTTGATGTAGAACAACAGCTTTTTTGTCAGGAGGTCTCAGAGCTAAGTGCACAAGAGCTCAACAAATATTTACAGGCAAAATCTCAAGTTTTATGTGCTAATATCATGAATAAACACTGGGACAAACCATATTTCAGTCAAACACGCAATATCAGTCTCAAGGGAATGTCTGGGGCATTGCAAGAGGATGGACATTTAGCTGCTAGTGTGACACTGATTGAAGCAATTAGGTTTTTAAATAGATCACAAACCAATCCAAATGTTATTGATATGTATGAGCAGACTAAACAATCAAAGGCACAAGCTAGGATTGTTAGGAAATACCAGAGAACAGAAGCAGATAGAGGATTTTTTATCACAACATTACCAACTAGGGTGCGATTAGAAATAATAGAAGATTATTTCGATGCAATTGCAAAGGTTGTGCCTGAAGAATATATTTCTTATGGTGGGGATAAAAAAGTTCTAAATATTCAGAATGCACTAGAGAAAGCACTTAGATGGGCATCTGGAGTATCAGAAATTACAACAAGCACTGGTAAAAGCATCAAGTTTAAGCGGAAATTAATGTATGTTAGTGCTGATGCCACAAAATGGTCACCAGGAGATAATTCTGCTAAGTTTAGGAGATTTACACAAGCAATATATGATGGCTTATCAGACAACAAACTGAAATGTTGTGTTGTTGATGCATTACGTAACATTTATGAGACTGAATTTTTTATGTCCAGGAAATTACACCGATATATTGATAGTATGGAAAATCATTCAGATGCGGTTGAAGATTTCTTGGCATTTTTCTCAAATGGAGTCTCAGCCAATGTAAAGGGAAACTGGCTTCAAGGGAACTTAAATAAATGCTCATCATTATTTGGTGCTGCTGTCTCATTACTTTTTCGGGAGGTCTGGAAACAATTGTTTCCAGAATTAGAGTGTTTTTTTGAATTTGCACATCATTCAGATGATGCATTGTTCATTTATGGCTATCTGGAGCCTGAAGATGATGGAACAGATTGGTTTTTGTATGTATCACAGCAGATACAGGCAGGAAACTTTCATTGGCATGCTATAAATCAAGAGATGTGGAAGAGCATGTTTAATCTACATGAGCACTTACTATTAATGGGTTCTATTAAAGTGTCACCTAAGAAGACAACAGTATCACCTACTAATGCAGAATTTCTTTCTACTTTTTTTGAAGGTTGTGCTGTGTCAATCCCTTTTGTTAAAATCTTACTGGGTTCATTATCAGATCTTCCTGGGTTAGGTTTCTTTGATGATTTAGCAGCAGCACAAAGCAGATGTGTAAAGTCACTAGATTTGGGTGCTTGCCCACAATTAGCTCAACTAGCTATAGTATTATGCACAAGCAAAGTTGAGAGGTTGTATGGTACTGCTGATGGAATGGTAAACTCTCCAACAGCATTCCTTAAGGTGAATAAAGCACACGTACCAGTACCACTTGGTGGTGATGGCTCAATGTCTATTATGGAGCTTGCAACAGCTGGTTTTGGGATGGCAGATAAGAATATTTTAAAAAATGCATTCATATCTTATAAGCATACTCGTAGAGATGGTGATAGGTACGTATTGGGTTTATTTAAATTTTTGATGTCATTAAGTGAGGATGTATTCCAGCACGACCGATTGGGTGAGTTTAGTTTTGTAGGTAAAGTTCAATGGAAAGTGTTCACTCCTAAAGCTGAATTTGAATTTCATGATCAATTTTCACATAATTATTTATTAGAGTGGACACGTCAACATCCTGTGTATGACTATATTATTCCTAGAAATAGAGATAATTTGCTTGTATACCTTGTAAGAAAGTTGAATGATCCTAGCATCATTACAGCTATGACTATGCAGTCACCATTACAACTTCGTTTCCGTATGCAAGCAAAGCAACATATGAAAGTATGCCGGTATGAAGGTGAATGGGTCACATTCAGGGAGGTACTTGCTGCAGCTGATAGTTTTGCTACGAGTTACCAACCTACTGAAAGGGACATGGATCTCTTTAATACACTTGTAAGTTGTACATTTTCTAAAGAGTATGCTTGGAAAGACTTTTTAAATGAAGTAAGGTGTGAGGTCTTAACAACAAGACATGTACATAGGCCTAAAATTGCTAGGACATTCACTGTTAGAGAAAAGGACCAGGCTATACAAAATCCAATAAATTCGGTGATTGGCTATAAGTATGCTCTTACAGTGGATGAAGTCAGTGATGTTCTTGATAGTGCATTCTTCCCAGAGTCTCTATCTGCAGACTTACAGGTTATGAAAGATGGAGTTTACAGAGAATTAGGACTTGATATAAGTTCTCCTGAAGTCCTAAAACGCATAGCACCACTATTATATAAGGCAGGAAGGTCACGTGTTGTTATTGTGGAAGGAAATGTAGAAGGGACAGCTGAGTCAATCTGTAGTTATTGGCTCAAGACAATGTCACTGATTAAAACAATCAGAGTAAGACCTAAGAAGGAGGTACTGAAAGCTATGTCTTTATATAGTGTTAAAGAAAATATTGGATTGCAGGATGATATTGCAGCAACTCGACTATGCATAGAAATCTGGAGATGGTGTAAGGCAAATGAACAGGATGTTAAAGAATGGCTAACATCTCTGTACTTTGAAAAACAGACATTGATGGATTGGGTAGAAAGGTTTAGAAGGAAAGGAGTTGTTCCTATTGATCCTGAAATACAATGTATTGGCCTACTCTTATATGATGTATTAGGTTATAAAAGTGTGTTACAAATGCAAGCAAACCGAAGAGCCTATTCAGGTAAGCAATATGATGCATACTGTGTGCAAACATATAACGAGGAAACAAAACTATATGAAGGTGACCTTCGTGTTACTTTTAATTTTGGTTTAGATTGTGCAAGGTTAGAAGTTTTTTGGGATAAAAAAGAGTATATCTTAGAGACATCTATCACCCAACGACATGTGTTGCGGTTACTGATGGAAGAAGTGTCACAAGAATTAATTAGATGTGGAATGAGATTCAAAACAGAGCAAGTCAATCAAACTCGGAGCTTAGTGTTATTCAAAACAGAGGCTGGTTTTGAATGGGGTAAGCCTAATGTGCCATGTATTGTATATAAACACTGTGTCTTGAGAACTGGGCTTCGTACGAAACAGCCAATTAATAAAGAGTTCATGATAAATGTACAAAGTGATGGTTTCCGTGCAATAGCACAGATGGATATTGAGAGTCCACGGTTCTTGTTAGCACATGCATATCATACACTGCGTGATATTAGATATCAAGCAGTGCAGGCAGTAGGGAATGTATGGTTTAAAACAGAACAGCACAAACTATTTATTAACCCAATTATATCATCAGGGCTTTTAGAAAACTTTATGAAAGGCTTACCTGCTGCCATACCTCCTGCTGCATATTCCCTCATAATGAACAAGGCTAAGATTTCTGTGGATTTGTTTATGTTCAATGAGCTATTAGCACTTATAAATAGGAATAATATCCTCAACCTTGATGGGATTGAAGAAACATCTGAAGGTTATAGTACTGTGACATCAATGTCTAGCAAGCAGTGGTCTGAAGAGATGAGTTTAATGTCTGATGATGATATTGATGATATGGAGGACTTTACTATAGCACTGGATGATATTGACTTTGAACAAATAAATTTGGAAGAGGATATACAACACTTTCTGCAGGATGAATCAGCATATGTTGGTGATTTATTGATTCAGACAGAAGACATTGAGGTTAAAAAGATACGTGGGGTGACAAGAGTATTAGAGCCAGTCAAGCTATTAAAAAGCTGGGTTTCTAAAGGCCTTGCTATAGACAAAGTATACAATCCTATCGGGATAATCTTAATGGCAAGATACATGTCAAAAACATACAATTTCAGTTCAACACCTCTTGCACTATTAAATCCATATGACTTGACAGAACTTGAAAGTGTTGTAAAGGGATGGGGAGAAACTGTAAATGATCGATTCAAAGATTTAGATATTGAGGCACAAACAGTTGTTAAAGAAAAGGGTGTACAGCCAGAAGATGTACTCCCTGATTCATTATTCTCTTTCAGGCATGTTGATGTTTTGCTGCGAAGGTTGTTCCCGCGTGACCCTGTATCAACATTCTATTAGTGGATTTTATACCTTATTCATACAGTATGTATATTGTAGTGTTCTTTTCCCGGAGCATACTACTA"}} \ No newline at end of file diff --git a/data_output/nextstrain/orthohantavirus/andv/m/unreleased/CHANGELOG.md b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/CHANGELOG.md new file mode 100644 index 000000000..64bfe4ca6 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/CHANGELOG.md @@ -0,0 +1,15 @@ +## Unreleased + +- update outbreak name to 2026-Hondius +- make nucleotide default sequence view. +- add GPC amino acid substitutions + +## 2026-05-11T18:59:50Z + +- Updating Nextclade dataset with the latest sequences and metadata from Pathoplexus +- Include 2026 outbreak sequences +- add 2026 outbreak annotation + +## 2026-05-08T21:17:05Z + + - initial release diff --git a/data_output/nextstrain/orthohantavirus/andv/m/unreleased/README.md b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/README.md new file mode 100644 index 000000000..2b6dd8998 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/README.md @@ -0,0 +1,17 @@ +# Andesvirus segment M dataset + +| Key | Value | +| :-- | :-- | +| name | Andes virus segment M Tree | +| authors | [Nextstrain](https://nextstrain.org) | +| reference | [NC_003467](www.ncbi.nlm.nih.gov/nuccore/NC_003467) | +| workflow | https://github.com/nextstrain/andv/tree/main/nextclade | +| path | `nextstrain/orthohantavirus/andv/m` | + +This dataset aligns sequences to the RefSeq entry [NC_003467.1](www.ncbi.nlm.nih.gov/nuccore/NC_003467.1) and places the sequences onto a tree build using sequences from INSDC and Pathoplexus. +Sequences from the 2026 outbreak were rapidly shared by several laboratories around the world to facilitate outbreak investigations. These data have been released under RESTRICTED USE terms on Pathoplexus. +We refer to the [summary of the initial investigations by this collaboration on virological.org](https://virological.org/t/preliminary-analysis-of-orthohantavirus-andesense-virus-sequences-from-a-cruise-ship-related-cluster-may-2026/1029) for further details. + +## What are Nextclade datasets + +Read more about Nextclade datasets in the Nextclade documentation: https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html diff --git a/data_output/nextstrain/orthohantavirus/andv/m/unreleased/dataset.zip b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/dataset.zip new file mode 100644 index 0000000000000000000000000000000000000000..d3234dc7b71e8b94517ef2195d0e6fca9187a925 GIT binary patch literal 328326 zcmeFa%aWW&mY~Pcw8>O7Nn<7(n{_m*7u_~QBI6#xvT9jW5KN*8l4u}^nojlS=k<9|j1i3HeFJ$*xDW~Bdq zIX6Gzi6S@3k@%i5EyI<_>Jb(Pt zpZ2~yI@ug<)~B1t@4tVucmCq>`fSrXK0kYOvRQxAJ6b>A^v;fZgWbX8<|oHTj}OjI 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b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/genome_annotation.gff3 new file mode 100644 index 000000000..68df2a679 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/genome_annotation.gff3 @@ -0,0 +1,9 @@ +##gff-version 3 +#!gff-spec-version 1.21 +#!processor NCBI annotwriter +##sequence-region NC_003467.2 1 3671 +##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1980456 +NC_003467.2 RefSeq region 1 3671 . + . ID=NC_003467.2:1..3671;Dbxref=taxon:1980456;Name=M;gbkey=Src;genome=genomic;mol_type=genomic RNA;old-name=Andes virus;segment=M;strain=Chile-9717869 +NC_003467.2 RefSeq CDS 52 3468 . + 0 Name=GPC; +NC_003467.2 RefSeq CDS 52 2004 . + 0 Name=Gn; +NC_003467.2 RefSeq CDS 2005 3468 . + 0 Name=Gc; diff --git a/data_output/nextstrain/orthohantavirus/andv/m/unreleased/pathogen.json b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/pathogen.json new file mode 100644 index 000000000..18d876af8 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/pathogen.json @@ -0,0 +1,65 @@ +{ + "$schema": "https://raw.githubusercontent.com/nextstrain/nextclade/refs/heads/release/packages/nextclade-schemas/input-pathogen-json.schema.json", + "files": { + "reference": "reference.fasta", + "pathogenJson": "pathogen.json", + "genomeAnnotation": "genome_annotation.gff3", + "treeJson": "tree.json", + "examples": "sequences.fasta", + "readme": "README.md", + "changelog": "CHANGELOG.md" + }, + "schemaVersion": "3.0.0", + "attributes": { + "name": "Andesvirus (segment M)", + "reference name": "Chile-9717869", + "reference accession": "NC_003467" + }, + "experimental": true, + "alignmentParams": { + "penaltyGapExtend": 1, + "penaltyGapOpen": 8, + "penaltyGapOpenInFrame": 15, + "penaltyGapOpenOutOfFrame": 18, + "penaltyMismatch": 1, + "scoreMatch": 5, + "retryReverseComplement": true, + "allowedMismatches": 10, + "minSeedCover": 0.12, + "minLength": 100 + }, + "qc": { + "missingData": { + "enabled": true, + "missingDataThreshold": 200, + "scoreBias": 100 + }, + "mixedSites": { + "enabled": true, + "mixedSitesThreshold": 4 + }, + "frameShifts": { + "enabled": true + }, + "stopCodons": { + "enabled": true + }, + "privateMutations": { + "enabled": true, + "cutoff": 120, + "typical": 70, + "weightLabeledSubstitutions": 1, + "weightReversionSubstitutions": 1, + "weightUnlabeledSubstitutions": 1 + }, + "snpClusters": { + "enabled": true, + "clusterCutOff": 15, + "scoreWeight": 50, + "windowSize": 50 + } + }, + "version": { + "tag": "unreleased" + } +} diff --git a/data_output/nextstrain/orthohantavirus/andv/m/unreleased/reference.fasta b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/reference.fasta new file mode 100644 index 000000000..57fb40bff --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/reference.fasta @@ -0,0 +1,63 @@ +>NC_003467.2 Andes virus segment M, complete genome +TAGTAGTAGACTCCGCAAGAAGAAGCAAAAAATTAAAGAAGTGAGTTTAAAATGGAAGGG +TGGTATCTGGTTGTTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCCAAGACCATT +TATGAGCTTAAAATGGAATGCCCGCACACTGTGGGTCTCGGTCAAGGTTACATCATTGGC +TCAACAGAACTAGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTCGAGAGCTCT +TGCAATTTTGATCTTCATACAACATCTATGGCCCAGAAGAGTTTCACCCAAGTTGAATGG +AGAAAGAAAAGTGACACAACTGATACCACAAATGCTGCGTCCACTACCTTTGAAGCACAA +ACTAAAACTGTTAACCTTAGAGGGACTTGTATACTGGCACCTGAACTCTATGATACATTG +AAGAAAGTAAAAAAGACAGTCCTGTGCTATGATCTAACATGTAATCAAACACATTGTCAG +CCAACTGTCTATCTGATTGCACCTGTATTGACATGCATGTCAATAAGAAGTTGTATGGCT +AGTGTGTTTACAAGCAGGATTCAGGTGATTTATGAAAAGACACATTGTGTAACAGGTCAG +CTGATTGAGGGTCAGTGTTTCAACCCAGCACACACATTGACATTATCTCAGCCTGCTCAC +ACTTATGATACTGTCACCCTTCCTATCTCTTGTTTTTTCACACCAAAGAAGTCGGAGCAA +CTAAAAGTTATAAAAACATTTGAAGGAATTCTGACGAAGACAGGTTGCACGGAGAATGCA +TTGCAGGGTTATTATGTGTGTTTTTTAGGGAGTCATTCAGAACCTTTAATTGTTCCGAGT +TTGGAGGACATACGGTCTGCTGAAGTTGTTAGTAGGATGCTTGTACACCCTAGGGGAGAA +GACCATGATGCCATACAGAATTCACAAAGTCACTTAAGAATAGTGGGACCTATCACAGCA +AAAGTGCCATCAACTAGTTCCACAGATACCCTAAAGGGGACAGCCTTTGCAGGCGTCCCA +ATGTATAGCTCTTTATCTACACTAGTCAGAAATGCAGACCCAGAATTTGTATTTTCTCCA +GGTATAGTACCTGAATCTAATCACAGTACATGTGATAAGAAGACAGTACCTATCACATGG +ACAGGCTACCTACCAATATCAGGTGAGATGGAAAAAGTGACTGGATGTACAGTTTTTTGT +ACACTAGCAGGACCTGGTGCTAGTTGTGAGGCCTATTCTGAAAATGGTATATTTAACATC +AGTTCTCCAACATGTCTTGTAAACAAAGTCCAAAGATTTCGTGGATCTGAACAGAAAATA +AATTTTATCTGTCAGCGGGTAGATCAGGATGTTGTTGTATACTGCAATGGGCAAAAGAAA +GTCATATTAACCAAAACTTTGGTTATTGGGCAGTGTATTTATACATTCACAAGCCTATTT +TCATTGATGCCTGATGTAGCCCACTCATTGGCTGTAGAATTATGTGTCCCGGGATTACAT +GGATGGGCCACTGTCATGCTTCTATCAACATTCTGCTTTGGGTGGGTCTTGATTCCTGCG +GTCACATTAATAATATTAAAGTGTCTAAGGGTTTTGACGTTTTCTTGTTCCCATTACACT +AATGAGTCAAAATTTAAATTCATCCTGGAAAAAGTTAAAATTGAATACCAAAAGACTATG +GGATCAATGGTGTGCGATGTATGTCATCATGAGTGTGAAACAGCAAAAGAACTTGAATCA +CATAGACAGAGTTGTATCAATGGACAATGTCCTTATTGCATGACAATAACTGAAGCAACT +GAAAGTGCCTTGCAAGCCCATTATTCCATTTGTAAATTGACAGGAAGATTTCAGGAGGCA +CTGAAAAAGTCACTTAAAAAGCCAGAGGTAAAAAAAGGTTGTTACAGAACACTCGGGGTA +TTTAGATATAAAAGTAGATGTTATGTGGGTTTGGTATGGTGCCTATTGTTGACATGTGAA +ATTGTTATTTGGGCCGCAAGTGCAGAGACTCCACTAATGGAGTCAGGCTGGTCAGATACG +GCTCATGGTGTTGGTGAGATTCCAATGAAGACAGACCTCGAGCTGGACTTTTCACTGCCT +TCTTCATCCTCTTACAGTTATAGGAGAAAGCTCACAAACCCAGCCAATAAAGAAGAGTCT +ATTCCCTTCCACTTCCAGATGGAAAAACAAGTAATTCATGCTGAAATCCAACCCCTGGGT +CATTGGATGGATGCGACATTTAATATTAAGACTGCATTTCATTGTTATGGTGCATGCCAG +AAATACTCTTATCCATGGCAGACATCTAAGTGCTTCTTTGAAAAGGACTACCAGTATGAA +ACAGGCTGGGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGATGCACTGCTTGT +GGTGTTTATCTCGATAAACTAAAATCTGTTGGGAAGGCCTATAAGATAATTTCTTTAAAA +TATACCAGAAAGGTTTGTATTCAGTTAGGAACAGAACAAACTTGCAAGCATATTGATGCA +AATGATTGTTTAGTGACACCATCTGTGAAAGTTTGCATAGTGGGCACAGTTTCAAAACTT +CAACCATCTGATACTCTTTTGTTCTTAGGTCCACTAGAACAAGGGGGAATCATTCTTAAG +CAATGGTGCACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCCACTCCCAGT +GGTATGAGGTGTCCAGAGCACACTGGATCATTTAGGAAAATTTGCGGTTTTGCTACTACA +CCAGTTTGTGAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATGGCAACAAAA +GATTCATTCCAATCATTTAACTTAACAGAACCTCACATCACAACAAACAAGCTTGAATGG +ATCGACCCAGATGGGAATACAAGAGACCACGTAAACCTTGTCTTAAATAGAGATGTCTCA +TTTCAGGATTTAAGTGATAACCCCTGTAAAGTAGACCTACACACACAAGCAATAGAAGGG +GCATGGGGTTCTGGTGTAGGGTTTACACTCACATGTACTGTCGGATTAACAGAGTGCCCA +AGTTTTATGACATCAATTAAGGCATGTGACCTAGCTATGTGTTATGGATCAACAGTAACA +AACCTTGCCAGGGGCTCTAATACAGTGAAAGTAGTTGGTAAAGGAGGCCATTCAGGGTCC +TCATTTAAATGCTGTCATGATACAGATTGCTCCTCTGAAGGTTTACTTGCATCAGCCCCT +CATCTTGAGAGGGTAACAGGATTCAATCAAATTGATTCAGATAAGGTTTATGATGATGGT +GCACCACCTTGCACATTCAAATGCTGGTTCACTAAGTCAGGTGAGTGGCTTCTTGGGATC +TTAAACGGGAATTGGATTGTTGTTGTAGTGCTTGTTGTGATACTCATTCTCTCTATCATA +ATGTTCAGTGTTTTGTGTCCCAGGAGAGGGCACAAGAAAACTGTCTAAGCATTGACCTCA +ACTCCTACATTAGATCATATACATTTATGCACTTCCTCATATTTAGCTGCACTAAGATAT +TAATAAACTCTAGTTATTGACTTTATAAGATTATTATGGAACTAACCTCACTTAAAAAAA +ACAAATACTTTACTCATATATAACTCCATATTCTCTTACCGAGGCTTTTGTTCCTGCGGA +GCATACTACTA diff --git a/data_output/nextstrain/orthohantavirus/andv/m/unreleased/sequences.fasta b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/sequences.fasta new file mode 100644 index 000000000..0965f65bc --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/sequences.fasta @@ -0,0 +1,466 @@ +>EU241663 +TTAGTAACACCATCTGTGAAAGTTTGTATAGTAGGCACAGTTTCTAAACTCCAACCATCT +GATACTCTTTTGTTCTTAGGTCCACTAGAACAAGGGGGAATCATTCTTAAACAATGGTGC +ACAACATCATGTGCATTTGGAGATCCTGGTGATATCATGTCCACTCCTAGTGGTATGAGG +TGTCCAGAACACACTGGATCATTTAGGAAAATTTGTGGGTTTGCCACTACACCAGTTTGT +GAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATGGCAACAAAAGACTCATTC +CAATCATTTAACTTAACAGAACCTCACATCACAACAAACAAGCTTGAGTGGATTGACCCA +GATGGGAATACAAGAGACCACGTAAATCTTGTCTTAAATAGAGATGTTTCATTCCAGGAT +TTAAGTGATAACCCCTGTAAAGTAGACTTACACACACAAGCAATAGAAGGAGCATGGGGT +TCTGGTGTAGGGTTTACACTTACATGTACTGTCGGATTAACAGAGTGCCCGAGTTTTATG +ACATCAATTAAAGCATGTGACCTAGCCATGTGCTATGGCTCAACAGTAGCAAACCT +>EU543217 +GTATGGGTCCAGCTAGGTACAGAACAAACTTGCAAGCATATTGATGCAAATGACTGCTTA +GTGACACCATCAGTCAAAATATGCATTGTTGGGACTGTCTCTAAACTTCAGCCATCCGAT +ACTCTTTTATTTTTAGGCCCTTTGGAACAAGGGGGAATAATCCTGAAACAGTGGTGTACA +ACAACATGTGCTTTTGGTGATCCAGGTGATATTATGTCTACAACAAGTGGTATGAGGTGT +CCTGAACATACGGGTTCTTTCAGGAAGATTTGTGGCTTTGCCACTACCCCGATTTGTGAA +TATCAAGGAAATACTATTTCTGGTTATAAAAGGATGATGGCAACTAAAGATTCATTTCAA +TCATTTAATCTGACAGATCCCCACATCACAACAAATAAACTTGAATGGATTGACCCAGAT +GGCAACACACGAGATCATGTCAATCTTATTCTAAACAGGGATGTATCATTTCAGGATCTT +AGTGATAATCCATGCAGAGTTGACTTGCACACCCAATCAATCGATGGAGCTTGGGGTTCA +GGAGTCGGTTTCACACTCACATGCACTGTTGGGCTAACAGAGTGTCCAAGTTTTATGACA +TCAATTAAAGCATGTGATCTTGCAATGTGTTACGGCTCTACTGTGGCAAACTTGGCAAGG +GGTTCAAATACAGTAAAAGTAGTAGGTAAAGGAGGACATTCTGGGTCATCATTCAAATGC +TGTCATGATAGTGAATGCTCTTCGGAAGGTCTAGTTGCATCAGCACCACATTTAGAGAGG +GTGACTGGATTCAATCAAATTGATTCTGATAAAGTTTACGATGATGGTGCTCCTCCTTGC +ACAGTAAAGTGCTGGTTTACAAAGTCAGGTGAATGGCTCCTTGGTATTTTAAATGGTAAT +TGGGTTGTGGTTGTTGTTCTTTTTGTGATACTTATCTTCTCTATCATTTTATTCAGTATC +TTATGCCCTAGAAGAGGGCATAAGAAGAGTGCTTGATTGTTTGTCATTTATATTATAATA +CAGTTTATTACCATTAGGCCGACGTATACTCACTGTTATATAAACATACTAATATTCAAT +CACTTACTTAGTATAATCAATATTAACACATTAATCTGACATAAAAAAAACAAATACTTT +ACTAACATAAAACTACATTTTCTCTTACCGAGGATTTTGTTCCTGCGGAGCAATACTACT +A +>MK513891 +ATGGAAGGGTGGTATCTGGTTGTTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCC +AAGACCATTTATGAGCTTAAAATGGAATGCCCGCACACTGTGGGTCTCGGTCAAGGTTAC +ATCATTGGCTCAACAGAACTAGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTC +GAGAGCTCTTGCAATTTTGATCTTCATACAACATCTATGGCCCAGAAGAGTTTCACCCAA +GTTGAATGGAGAAAGAAAAGTGACACAACTGATACCACAAATGCTGCGTCCACTACCTTT +GAAGCACAAACTAAAACTGTTAACCTTAGAGGGACTTGTATACTGGCACCTGAACTCTAT +GGTACATTGAAGAAAGTAAAAAAGACAGTCCTGTGCTATGATCTAACATGTAATCAAACA +CATTGTCAGCCAACTGTCTATCTGATTGCACCTGTATTGACATGCATGTCAATAAGAAGT +TGTATGGCTAGTGTGTTTACAAGCAGGATTCAGGTGATTTATGAAAAGACACATTGTGTA +ACAGGTCAGCTGATTGAGGGTCAGTGTTTCAACCCAGCACACACATTGACATTATCTCAG +CCTGCTCACACTTATGATACTGTCACCCTTCCTATCTCTTGTTTTTTCACACCAAAGAAG +TCGGAGCAACTAAAAGTTATAAAAACATTTGAAGGAATTCTGACGAAGACAGGTTGCACG +GAGAATGCATTGCAGGGTTATTATGTGTGTTTTTTAGGGAGTCATTCAGAACCTTTAATT +GTTCCGAGTTTGGAGGACATACGGTCTGCTGAAGTTGTTAGTAGGATGCTTGTACACCCT +AGGGGAGAAGACCATGATGCCATACAGAATTCACAAAGTCACTTAAGAATAGTGGGACCT +ATCACAGCAAAAGTGCCATCAACTAGTTCCACAGATACCCTAAAGGGGACAGCCTTTGCA +GGCGTCCCAATGTATAGCTCTTTATCTACACTAGTCAGAAATGCAGACCCAGAATTTGTA +TTTTCTCCAGGTATAGTACCTGAATCTAATCACAGTACATGTGATAAGAAGACAGTACCT +ATCACATGGACAGGCTACCTACCAATATCAGGTGAGATGGAAAAAGTGACTGGATGTACA +GTTTTTTGTACACTAGCAGGACCTGGTGCTAGTTGTGAGGCCTATTCTGAAAATGGTATA +TTTAACATCAGTTCTCCAACATGTCTTGTAAACAAAGTCCAAAGATTTCGTGGATCTGAA +CAGAAAATAAATTTTATCTGTCAGCGGGTAGATCAGGATGTTGTTGTATACTGCAATGGG +CAAAAGAAAGTCATATTAACCAAAACTTTGGTTATTGGGCAGTGTATTTATACATTCACA +AGCCTATTTTCATTGATGCCTGATGTAGCCCACTCATTGGCTGTAGAATTATGTGTCCCG +GGATTACATGGATGGGCCACTGTCATGCTTCTATCAACATTCTGCTTTGGGTGGGTCTTG +ATTCCTGCGGTCACATTAATAATATTAAAGTGTCTAAGGGTTTTGACGTTTTCTTGTTCC +CATTACACTAATGAGTCAAAATTTAAATTCATCCTGGAAAAAGTTAAAATTGAATACCAA +AAGACTATGGGATCAATGGTGTGCGATGTATGTCATCATGAGTGTGAAACAGCAAAAGAA +CTTGAATCACATAGACAGAGTTGTATCAATGGACAATGTCCTTATTGCATGACAATAACT +GAAGCAACTGAAAGTGCCTTGCAAGCCCATTATTCCATTTGTAAATTGACAGGAAGATTT +CAGGAGGCACTGAAAAAGTCACTTAAAAAGCCAGAGGTAAAAAAAGGTTGTTACAGAACA +CTCGGGGTATTTAGATATAAAAGTAGATGTTATGTGGGTTTGGTATGGTGCCTATTGTTG +ACATGTGAAATTGTTATTTGGGCCGCAAGTGCAGAGACTCCACTAATGGAGTCAGGCTGG +TCAGATACGGCTCATGGTGTTGGTGAGATTCCAATGAAGACAGACCTCGAGCTGGACTTT +TCACTGCCTTCTTCATCCTCTTACAGTTATAGGAGAAAGCTCACAAACCCAGCCAATAAA +GAAGAGTCTATTCCCTTCCACTTCCAGATGGAAAAACAAGTAATTCATGCTGAAATCCAA +CCCCTGGGTCATTGGATGGATGCGACATTTAATATTAAGACTGCATTTCATTGTTATGGT +GCATGCCAGAAATACTCTTATCCATGGCAGACATCTAAGTGCTTCTTTGAAAAGGACTAC +CAGTATGAAACAGGCTGGGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGATGC +ACTGCTTGTGGTGTTTATCTCGATAAACTAAAATCTGTTGGGAAGGCCTATAAGATAATT +TCTTTAAAATATACCAGAAAGGTTTGTATTCAGTTAGGAACAGAACAAACTTGCAAGCAT +ATTGATGCAAATGATTGTTTAGTGACACCATCTGTGAAAGTTTGCATAGTGGGCACAGTT +TCAAAACTTCAACCATCTGATACTCTTTTGTTCTTAGGTCCACTAGAACAAGGGGGAATC +ATTCTTAAGCAATGGTGCACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCC +ACTCCCAGTGGTATGAGGTGTCCAGAGCACACTGGATCATTTAGGAAAATTTGCGGTTTT +GCTACTACACCAGTTTGTGAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATG +GCAACAAAAGATTCATTCCAATCATTTAACTTAACAGAACCTCACATCACAACAAACAAG +CTTGAATGGATCGACCCAGATGGGAATACAAGAGACCACGTAAACCTTGTCTTAAATAGA +GATGTCTCATTTCAGGATTTAAGTGATAACCCCTGTAAAGTAGACCTACACACACAAGCA +ATAGAAGGGGCATGGGGTTCTGGTGTAGGGTTTACACTCACATGTACTGTCGGATTAACA +GAGTGCCCAAGTTTTATGACATCAATTAAGGCATGTGACCTAGCTATGTGTTATGGATCA +ACAGTAACAAACCTTGCCAGGGGCTCTAATACAGTGAAAGTAGTTGGTAAAGGAGGCCAT +TCAGGGTCCTCATTTAAATGCTGTCATGATACAGATTGCTCCTCTGAAGGTTTACTTGCA +TCAGCCCCTCATCTTGAGAGGGTAACAGGATTCAATCAAATTGATTCAGATAAGGTTTAT +GATGATGGTGCACCACCTTGCACATTCAAATGCTGGTTCACTAAGTCAGGTGAGTGGCTT +CTTGGGATCTTAAACGGGAATTGGATTGTTGTTGTAGTGCTTGTTGTGATACTCATTCTC +TCTATCATAATGTTCAGTGTTTTGTGTCCCAGGAGAGGGCACAAGAAAACTGTCTAA +>MN095808 +ATGGAAGGGTGGTATCTGGTTGTTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCC +AAGACCATTTATGAGCTTAAAATGGAATGCCCGCACACTGTGGGTCTCGGTCAAGGTTAC +ATCATTGGCTCAACAGAACTAGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTC +GAGAGCTCTTGCAATTTTGATCTTCATACAACATCTATGGCCCAGAAGAGTTTCACCCAA +GTTGAATGGAGAAAGAAAAGTGACACAACTGATACCACAAATGCTGCGTCCACTACCTTT +GAAGCACAAACTAAAACTGTTAACCTTAGAGGGACTTGTATACTGGCACCTGAACTCTAT +GATACATTGAAGAAAGTAAAAAAGACAGTCCTGTGCTATGATCTAACATGTAATCAAACA +CATTGTCAGCCAACTGTCTATCTGATTGCACCTGTATTGACATGCATGTCAATAAGAAGT +TGTATGGCTAGTGTGTTTACAAGCAGGATTCAGGTGATTTATGAAAAGACACATTGTGTA +ACAGGTCAGCTGATTGAGGGTCAGTGTTTCAACCCAGCACACACATTGACATTATCTCAG +CCTGCTCACACTTATGATACTGTCACCCTTCCTATCTCTTGTTTTTTCACACCAAAGAAG +TCGGAGCAACTAAAAGTTATAAAAACATTTGAAGGAATTCTGACGAAGACAGGTTGCACG +GAGAATGCATTGCAGGGTTATTATGTGTGTTTTTTAGGGAGTCATTCAGAACCCTTAATT +GTTCCGAGTTTGGAGGACATACGGTCTGCTGAAGTTGTTAGTAGGATGCTTGTACACCCT +AGGGGAGAAGACCATGATGCCATACAGAATTCACAAAGTCACTTAAGAATAGTGGGACCT +ATCACAGCAAAAGTGCCATCAACTAGTTCCACAGATACCCTAAAGGGGACAGCCTTTGCA +GGCGTCCCAATGTATAGCTCTTTATCTACACTAGTCAGAAATGCAGACCCAGAATTTGTA +TTTTCTCCAGGTATAGTACCTGAATCTAATCACAGTACATGTGATAAGAAGACAGTACCT +ATCACATGGACAGGCTACCTACCAATATCAGGTGAGATGGAAAAAGTGACTGGATGTACA +GTTTTTTGTACACTAGCAGGACCTGGTGCTAGTTGTGAGGCCTATTCTGAAAATGGTATA +TTTAACATCAGTTCTCCAACATGTCTTGTAAACAAAGTCCAAAGATTTCGTGGATCTGAA +CAGAAAATAAATTTTATCTGTCAGCGGGTAGATCAGGATGTTGTTGTATACTGCAATGGG +CAAAAGAAAGTCATATTAACCAAAACTTTGGTTATTGGGCAGTGTATTTATACATTCACA +AGCCTATTTTCATTGATGCCTGATGTAGCCCACTCATTGGCTGTAGAATTATGTGTCCCG +GGATTACATGGATGGGCCACTGTCATGCTTCTATCAACATTCTGCTTTGGGTGGGTCTTG +ATTCCTGCGGTCACATTAATAATATTAAAGTGTCTAAGGGTTTTGACGTTTTCTTGTTCC +CATTACACTAATGAGTCAAAATTTAAATTCATCCTGGAAAAAGTTAAAATTGAATACCAA +AAGACTATGGAATCAATGGTGTGCGATGTATGTCATCATGAGTGTGAAACAGCAAAAGAA +CTTGAATCACATAGACAGAGTTGTATCAATGGACAATGTCCTTATTGCATGACAATAACT +GAAGCAACTGAAAGTGCCTTGCAAGCCCATTATTCCATTTGTAAATTGACAGGAAGATTT +CAGGAGGCACTGAAAAAGTCACTTAAAAAGCCAGAGGTAAAAAAAGGTTGTTACAGAACA +CTCGGGGTATTTAGATATAAAAGTAGATGTTATGTGGGTTTGGTATGGTGCCTATTGTTG +ACATGTGAAATTGTTATTTGGGCCGCAAGTGCAGAGACTCCACTAATGGAGTCAGGCTGG +TCAGATACGGCTCATGGTGTTGGTGAGATTCCAATGAAGACAGACCTCGAGCTGGACTTT +TCACTGCCTTCTTCATCCTCTTACAGTTATAGGAGAAAGCTCACAAACCCAGCCAATAAA +GAAGAGTCTATTCCCTTCCACTTCCAGATGGAAAAACAAGTAATTCATGCTGAAATCCAA +CCCCTGGGTCATTGGATGGATGCGACATTTAATATTAAGACTGCATTTCATTGTTATGGT +GCATGCCAGAAATACTCTTATCCATGGCAGACATCTAAGTGCTTCTTTGAAAAGGACTAC +CAGTATGAAACAGGCTGGGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGATGC +ACTGCTTGTGGTGTTTATCTCGATAAACTAAAATCTGTTGGGAAGGCCTATAAGATAATT +TCTTTAAAATATACCAGAAAGGTTTGTATTCAGTTAGGAACAGAACAAACTTGCAAGCAT +ATTGATGCAAATGATTGTTTAGTGACACCATCTGTGAAAGTTTGCATAGTGGGCACAGTT +TCAAAACTTCAACCATCTGATACTCTTTTGTTCTTAGGTCCACTAGAACAAGGGGGAATC +ATTCTTAAGCAATGGTGCACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCC +ACTCCCATTGGTATGAGGTGTCCAGAGCACACTGGATCATTTAGGAAAATTTGCGGTTTT +GCTACTACACCAGTTTGTGAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATG +GCAACAAAAGATTCATTCCAATCATTTAACTTAACAGAACCTCACATCACAACAGACAAG +CTTGAATGGATCGACCCAGATGGGAATACAAGAGACCACGTAAACCTTGTCTTAAATAGA +GATGTCTCATTTCAGGATTTAAGTGATAACCCCTGTAAAGTAGACCTACACACACAAGCA +ATAGAAGGGGCATGGGGTTCTGGTGTAGGGTTTACACTCACATGTACTGTCGGATTAACA +GAGTGCCCAAGTTTTATGACATCAATTAAGGCATGTGACCTAGCTATGTGTTATGGATCA +ACAGTAACAAACCTTGCCAGGGGCTCTAATACAGTGAAAGTAGTTGGTAAAGGAGGCCAT +TCAGGGTCCTCATTTAAATGCTGTCATGATACAGATTGCTCCTCTGAAGGTTTACTTGCA +TCAGCCCCTCATCTTGAGAGGGTAACAGGATTCAATCAAATTGATTCAGATAAGGTTTAT +GATGATGGTGCACCACCTTGCACATTCAAATGCTGGTTCACTAAGTCAGGTGAGTGGCTT +CTTGGGATCTTAAACGGGAATTGGATTGTTGTTGTAGTGCTTGTTGTGATACTCATTCTC +TCTATCATAATGTTCAGTGTTTTGTGTCCCAGGAGAGGGCACAAGAAAACTGTCTAA +>MN095815 +ATGGAAGGGTGGTATCTGGTTGTTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCC +AAGACCATTTATGAGCTTAAAATGGAATGCCCGCACACTGTGGGTCTCGGTCAAGGTTAC +ATCATTGGCTCAACAGAACTAGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTC +GAGAGCTCTTGCAATTTTGATCTTCATACAACATCTATGGCCCAGAAGAGTTTCACCCAA +GTTGAATGGAGAAAGAAAAGTGACACAACTGATACCACAAATGCTGCGTCCACTACCTTT +GAAGCACAAACTAAAACTGTTAACCTTAGAGGGACTTGTATACTGGCACCTGAACTCTAT +GATACATTGAAGAAAGTAAAAAAGACAATCCTGTGCTATGATCTAACATGTAATCAAACA +CATTGTCAGCCAACTGTCTATCTGATTGCACCTGTATTGACATGCATGTCAATAAGAAGT +TGTATGGCTAGTGTGTTTACAAGCAGGATTCAGGTGATTTATGAAAAGACACATTGTGTA +ACAGGTCAGCTGATTGAGGGTCAGTGTTTCAACCCAGCACACACATTGACATTATCTCAG +CCTGCTCACACTTATGATACTGTCACCCTTCCTATCTCTTGTTTTTTCACACCAAAGAAG +TCGGAGCAACTAAAAGTTATAAAAACATTTGAAGGAATTCTGACGAAGACAGGTTGCACG +GAGAATGCATTGCAGGGTTATTATGTGTGTTTTTTAGGGAGTCATTCAGAACCTTTAATT +GTTCCGAGTTTGGAGGACATACGGTCTGCTGAAGTTGTTAGTAGGATGCTTGTACACCCT +AGGGGAGAAGACCATGATGCCATACAGAATTCACAAAGTCACTTAAGAATAGTGGGACCT +ATCACAGCAAAAGTGCCATCAACTAGTTCCACAGATACCCTAAAGGGGACAGCCTTTGCA +GGCGTCCCAATGTATAGCTCTTTATCTACACTAGTCAGAAATGCAGACCCAGAATTTGTA +TTTTCTCCAGGTATAGTACCTGAATCTAATCACAGTACATGTGATAAGAAGACAGTACCT +ATCACATGGACAGGCTACCTACCAATATCAGGTGAGATGGAAAAAGTGACTGGATGTACA +GTTTTTTGTACACTAGCAGGACCTGGTGCTAGTTGTGAGGCCTATTCTGAAAATGGTATA +TTTAACATCAGTTCTCCAACATGTCTTGTAAACAAAGTCCAAAGATTTCGTGGATCTGAA +CAGAAAATAAATTTTATCTGTCAGCGGGTAGATCAGGATGTTGTTGTATACTGCAATGGG +CAAAAGAAAGTCATATTAACCAAAACTTTGGTTATTGGGCAGTGTATTTATACATTCACA +AGCCTATTTTCATTGATGCCTGATGTAGCCCACTCATTGGCTGTAGAATTATGTGTCCCG +GGATTACATGGATGGGCCACTGTCATGCTTCTATCAACATTCTGCTTTGGGTGGGTCTTG +ATTCCTGCGGTCACATTAATAATATTAAAGTGTCTAAGGGTTTTGACGTTTTCTTGTTCC +CATTACACTAATGAGTCAAAATTTAAATTCATCCTGGAAAAAGTTAAAATTGAATACCAA +AAGACTATGGGATCAATGGTGTGCGATGTATGTCATCATGAGTGTGAAACAGCAAAAGAA +CTTGAATCACATAGACAGAGTTGTATCAATGGACAATGTCCTTATTGCATGACAATAACT +GAAGCAACTGAAAGTGCCTTGCAAGCCCATTATTCCATTTGTAAATTGACAGGAAGATTT +CAGGAGGCACTGAAAAAGTCACTTAAAAAGCCAGAGGTAAAAAAAGGTTGTTACAGAACA +CTCGGGGTATTTAGATATAAAAGTAGATGTTATGTGGGTTTGGTATGGTGCCTATTGTTG +ACATGTGAAATTGTTATTTGGGCCGCAAGTGCAGAGACTCCACTAATGGAGTCAGGCTGG +TCAGATACGGCTCATGGTGTTGGTGAGATTCCAATGAAGACAGACCTCGAGCTGGACTTT +TCACTGCCTTCTTCATCCTCTTACAGTTATAGGAGAAAGCTCACAAACCCAGCCAATAAA +GAAGAGTCTATTCCCTTCCACTTCCAGATGGAAAAACAAGTAATTCATGCTGAAATCCAA +CCCCTGGGTCATTGGATGGATGCGACATTTAATATTAAGACTGCATTTCATTGTTATGGT +GCATGCCAGAAATACTCTTATCCATGGCAGACATCTAAGTGCTTCTTTGAAAAGGACTAC +CAGTATGAAACAGGCTGGGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGATGC +ACTGCTTGTGGTGTTTATCTCGATAAACTAAAATCTGTTGGGAAGGCCTATAAGATAATT +TCTTTAAAATATACCAGAAAGGTTTGTATTCAGTTAGGAACAGAACAAACTTGCAAGCAT +ATTGATGCAAATGATTGTTTAGTGACACCATCTGTGAAAGTTTGCATAGTGGGCACAGTT +TCAAAACTTCAACCATCTGATACTCTTTTGTTCTTAGGTCCACTAGAACAAGGGGGAATC +ATTCTTAAGCAATGGTGCACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCC +ACTCCCCGTGGTATGAGGTGTCCAGAGCACACTGGATCATTTAGGAAAATTTGCGGTTTT +GCTACTACACCAGTTTGTGAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATG +GCAACAAAAGATTCATTCCAATCATTTAACTTAACAGAACCTCACATCACAACAGACAAG +CTTGAATGGATCGACCCAGATGGGAATACAAGAGACCACGTAAACCTTGTCTTAAATAGA +GATGTCTCATTTCAGGATTTAAGTGATAACCCCTGTAAAGTAGACCTACACACACAAGCA +ATAGAAGGGGCATGGGGTTCTGGTGTAGGGTTTACACTCACATGTACTGTCGGATTAACA +GAGTGCCCAAGTTTTATGACATCAATTAAGGCATGTGACCTAGCTATGTGTTATGGATCA +ACAGTAACAAACCTTGCCAGGGGCTCTAATACAGTGAAAGTAGTTGGTAAAGGAGGCCAT +TCAGGGTCCTCATTTAAATGCTGTCATGATACAGATTGCTCCTCTGAAGGTTTACTTGCA +TCAGCCCCTCATCTTGAGAGGGTAACAGGATTCAATCAAATTGATTCAGATAAGGTTTAT +GATGATGGTGCACCACCTTGCACATTCAAATGCTGGTTCACTAAGTCAGGTGAGTGGCTT +CTTGGGATCTTAAACGGGAATTGGATTGTTGTTGTAGTGCTTGTTGTGATACTCATTCTC +TCTATCATAATGTTCAGTGTTTTGTTTCCCAGGAGAGGGCACAAGAAAACTGTCTAA +>MN095822 +ATGGAAGGGTGGTATCTGGTTGTTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCC +AAGACCATTTATGAGCTTAAAATGGAATGCCCGCACACTGTGGGTCTCGGTCAAGGTTAC +ATCATTGGCTCAACAGAACTAGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTC +GAGAGCTCTTGCAATTTTGATCTTCATACAACATCTATGGCCCAGAAGAGTTTCACCCAA +GTTGAATGGAGAAAGAAAAGTGACACAACTGATACCACAAATGCTGCGTCCACTACCTTT +GAAGCACAAACTAAAACTGTTAACCTTAGAGGGACTTGTATACTGGCACCTGAACTCTAT +GATACATTGAAGAAAGTAAAAAAGACAGTCCTGTGCTATGATCTAACATGTAATCAAACA +CATTGTCAGCCAACTGTCTATCTGATTGCACCTGTATTGACATGCATGTCAATAAGAAGT +TGTATGGCTAGTGTGTTTACAAGCAGGATTCAGGTGATTTATGAAAAGACACATTGTGTA +ACAGGTCAGCTGATTGAGGGTCAGTGTTTCAACCCAGCACACACATTGACATTATCTCAG +CCTGCTCACACTTATGATACTGTCACCCTTCCTATCTCTTGTTTTTTCACACCAAAGAAG +TCGGAGCAACTAAAAGTTATAAAAACGTTTGAAGGAATTCTGACGAAGACAGGTTGCACG +GAGAATGCATTGCAGGGTTATTATGTGTGTTTTTTAGGGAGTCATTCAGAACCTTTAATT +GTTCCGAGTTTGGAGGACATACGGTCTGCTGAAGTTGTTAGTAGGATGCTTGTACACCCT +AGGGGAGAAGACCATGATGCCATACAGAATTCACAAAGTCACTTAAGAATAGTGGGACCT +ATCACAGCAAAAGTGCCATCAACTAGTTCCACAGATACCCTAAAGGGGACAGCCTTTGCA +GGCGTCCCAATGTATAGCTCTTTATCTACACTAGTCAGAAATGCAGACCCAGAATTTGTA +TTTTCTCCAGGTATAGTACCTGAATCTAATCACAGTACATGTGATAAGAAGACAGTACCT +ATCACATGGACAGGCTACCTACCAATATCAGGTGAGATGGAAAAAGTGACTGGATGTACA +GTTTTTTGTACACTAGCAGGACCTGGTGCTAGTTGTGAGGCCTATTCTGAAAATGGTATA +TTTAACATCAGTTCTCCAACATGTCTTGTAAACAAAGTCCAAAGATTTCGTGGATCTGAA +CAGAAAATAAATTTTATCTGTCAGCGGGTAGATCAGGATGTTGTTGTATACTGCAATGGG +CAAAAGAAAGTCATATTAACCAAAACTTTGGTTATTGGGCAGTGTATTTATACATTCACA +AGCCTATTTTCATTGATGCCTGATGTAGCCCACTCATTGGCTGTAGAATTATGTGTCCCG +GGATTACATGGATGGGCCACTGTCATGCTTCTATCAACATTCTGCTTTGGGTGGGTCTTG +ATTCCTGCGGTCACATTAATAATATTAAAGTGTCTAAGGGTTTTGACGTTTTCTTGTTCC +CATTACACTAATGAGTCAAAATTTAAATTCATCCTGGAAAAAGTTAAAATTGAATACCAA +AAGACTATGGGATCAATGGTGTGCGATGTATGTCATCATGAGTGTGAAACAGCAAAAGAA +CTTGAATCACATAGACAGAGTTGTATCAATGGACAATGTCCTTATTGCATGACAATAACT +GAAGCAACTGAAAGTGCCTTGCAAGCCCATTATTCCATTTGTAAATTGACAGGAAGATTT +CAGGAGGCACTGAAAAAGTCACTTAAAAAGCCAGAGGTAAAAAAAGGTTGTTACAGAACA +CTCGGGGTATTTAGATATAAAAGTAGATGTTATGTGGGTTTGGTATGGTGCCTATTGTTG +ACATGTGAAATTGTTATTTGGGCCGCAAGTGCAGAGACTCCACTAATGGAGTCAGGCTGG +TCAGATACGGCTCATGGTGTTGGTGAGATTCCAATGAAGACAGACCTCGAGCTGGACTTT +TCACTGCCTTCTTCATCCTCTTACAGTTATAGGAGAAAGCTCACAAACCCAGCCAATAAA +GAAGAGTCTATTCCCTTCCACTTCCAGATGGAAAAACAAGTAATTCATGCTGAAATCCAA +CCCCTGGGTCATTGGATGGATGCGACATTTAATATTAAGACTGCATTTCATTGTTATGGT +GCATGCCAGAAATACTCTTATCCATGGCAGACATCTAAGTGCTTCTTTGAAAAGGACTAC +CAGTATGAAACAGGCTGGGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGATGC +ACTGCTTGTGGTGTTTATCTCGATAAACTAAAATCTGTTGGGAAGGCCTATAAGGTAATT +ACTTTAAAATATACCAGAAAGGTTTGTATTCAGTTAGGAACAGAACAAACTTGCAAGCAT +ATTGATGCAAATGATTGTTTAGTGACACCATCTGTGAAAGTTTGCATAGTGGGCACAGTT +TCAAAACTTCAACCATCTGATACTCTTTTGTTCTTAGGTCCACTAGAACAAGGGGGAATC +ATTCTTAAGCAATGGTGCACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCC +ACTCCCAGTGGTATGAGGTGTCCAGAGCACACTGGATCATTTAGGAAAATTTGCGGTTTT +GCTACTACACCAGTTTGTGAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATG +GCAACAAAAGATTCATTCCAATCATTTAACTTAACAGAACCTCACATCACAACAGACAAG +CTTGAATGGATCGACCCAGATGGGAATACAAGAGACCACGTAAACCTTGTCTTAAATAGA +GATGTCTCATTTCAGGATTTAAGTGATAACCCCTGTAAAGTAGACCTACACACACAAGCA +ATAGAAGGGGCATGGGGTTCTGGTGTAGGGTTTACACTCACATGTACTGTCGGATTAACA +GAGTGCCCAAGTTTTATGACATCAATTAAGGCATGTGACCTAGCTATGTGTTATGGATCA +ACAGTAACAAACCTTGCCAGGGGCTCTAATACAGTGAAAGTAGTTGGTAAAGGAGGCCAT +TCAGGGTCCTCATTTAAATGCTGTCATGATACAGATTGCTCCTCTGAAGGTTTACTTGCA +TCAGCCCCTCATCTTGAGAGGGTAACAGGATTCAATCAAATTGATTCAGATAAGGTTTAT +GATGATGGTGCACCACCTTGCACATTCAAATGCTGGTTCACTAAGTCAGGTGAGTGGCTT +CTTGGGATCTTAAACGGGAATTGGATTGTTGTTGTAGTGCTTGTTGTGATACTCATTCTC +TCTATCATAATGTTCAGTGTTTTGTTTCCCAGGAGAGGGCACAAGAAAACTGTCTAA +>MN258198 +GTAGTAGACTCCGCAAGAAGAAGCAAAAAATTAAAGAAGTGAGTTTAAAATGGAAGGGTG +GTATCTGGTTGCTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCCAAAACCATTTA +TGAGCTTAAAATGGAATGCCCGCACACTGTGGGTCTAGGTCAAGGTTACATTATTGGCTC +AACAGAATTGGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTTGAGAGCTCTTG +TAATTTTGATCTTCATACAACGTCTATGGCCCAGAAGAGTTTCACCCAAGTTGAATGGAG +AAAGAAAAGTGACACAACTGACACCACAAATGCTGCATCCACCACCTTTGAAGCACAGAC +CAAAACTGTTAACCTTAGAGGGACCTGTATATTGGCACCTGAACTTTATGACACGTTGAA +GAAAGTAAAGAAGACAGTCCTGTGTTATGATTTAACATGCAATCAGACACATTGTCAGCC +AACTGTCTATCTGATTGCACCTGTGCTGACATGCATGTCAATTAGAAGTTGTATGGCTAG +TGTTTTTACAAGCAGGATTCAGGTGATCTATGAAAAGACACATTGTGTAACAGGTCAGCT +GATTGAGGGTCAGTGTTTCAACCCAGCACATACATTGACACTATCTCAACCTGCTCACAC +TTATGACACTGTCACCCTGCCTATCTCTTGTTTTCTCACACCAAAGAAGTCGGAGCAGCT +AAAAGTTATAAAAACATTTGAAGGAATTCTGACAAAGACAGGTTGCACAGAGAATGCATT +GCAAGGTTATTATGTATGTTTTTTAGGGAGTCATTCAGAACCTTTAATTGTTCCAAGTCT +GGAGGACATACGGTCTGCTGAAGTTGTCAGTAGGATGCTTGTACACCCTAGGGGAGAGGA +CCATGACGCCATACAAAATTCACAGAGTTACTTGAGAATAGTGGGACCTATCACAGCAAA +AGTGCCATCAACTAGTTCCACAGATACCCTAAAAGGGACAGCCTTTGCAGGCGTCCCAAT +GTATAGCTCCTTATCGACACTAGTCAGGAATGCAGACCCAGAATTTGTGTTTTCTCCAGG +GATCATACCGGAATCTAACCATAGTATATGTGATAAGAAAACAGTACCTATCACATGGAC +AGGCTACCTACCAATATCAGGTGAGATGGAAAAAGTGACTGGATGTACAGTTTTCTGTAC +ACTGGCGGGACCTGGTGCTAGCTGTGAAGCCTATTCTGAGAATGGTATCTTCAACATTAG +TTCCCCAACATGTCTTGTAAACAAAGTCCAGAGATTTAGAGGGTCTGAACAGAAGATAAA +TTTTATCTGCCAGCGGGTAGATCAGGATGTCGTTGTATACTGCAATGGGCAGAAGAAAGT +CATATTAACCAAAACATTGGTTATTGGACAATGTATTTATACATTCACAAGCCTATTTTC +ATTGATGCCTGATGTAGCCCACTCACTAGCTGTAGAATTATGCGTCCCAGGATTGCATGG +ATGGGCCACTGTCATGCTTTTATCAACCTTCTGCTTCGGGTGGATCTTGATTCCTGCAGT +AACATTAATAATATTAAAATGTCTGAGGGTTTTGACATTTTCTTGTTCCCATTACACTAA +TGAGTCAAAATTTAAATTCATCCTGGAAAAAGTTAAAGTTGAATACCAGAAGACTATGGG +ATCAATGGTGTGTGATGTATGTCATCATGAGTGTGAAACAGCAAAGGAACTTGAATCACA +TAGACAAAGTTGCATTAATGGACAATGCCCTTACTGCATGACAATAACTGAAGCAACCGA +GAGTGCCTTGCAAGCCCATTATTCCATCTGTAAATTGACAGGGAGATTTCAGGAGGCACT +AAAAAAGTCACTTAAGAAGCCAGAGGTAAAAAAAGGTTGTTACAGAACACTAGGGGTATT +TCGCTACAAAAGTAGATGTTATGTGGGTTTGGTATGGTGCCTATTATTGATATGCGAAAT +TGTTATTTGGGCTGCAAGTGCAGAGACTCCATTAATGGAGTCAGGTTGGTCAGATACAGC +TCATGGTGTTGGTGAGATTCCAATGAAGACAGACTTAGAGCTAGACTTTTCATTGCCTTC +TTCATCCTCTTATAGTTACAGGAGAAAGCTCACAAACCCAGCTAACAAGGAAGAGTCTAT +TCCCTTCCACTTCCAGATGGAAAAACAAGTAATTCATGCTGAGATCCAACCCTTAGGTCA +TTGGATGGATGCAACATTCAATATTAAGACTGCATTCCATTGTTATGGTGCATGCCAGAA +ATACTCTTATCCATGGCAGACATCTAAGTGCTTCTTTGAAAAAGACTACCAGTATGAAAC +AGGCTGGGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGGTGTACTGCTTGTGG +TGTTTACCTTGATAAACTAAAATCTGTGGGAAAGGCCTATAAGATCATTTCTTTAAAATA +CACCAGAAAGGTTTGCATTCAGTTAGGAACAGAACAAACATGCAAGCATATTGATGCAAA +CGATTGTTTAGTAACACCATCTGTGAAGGTCTGCATAGTGGGCACAGTTTCTAAACTTCA +ACCATCTGATACTCTTTTATTCTTAGGTCCACTAGAACAAGGGGGGATCATCCTTAAACA +ATGGTGCACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCCACTCCTAGTGG +TATGAGGTGTCCAGAACACACTGGATCATTCAGGAAAATTTGCGGTTTTGCCACTACACC +AGTTTGTGAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATGGCAACAAAAGA +TTCATTCCAATCATTTAACTTAACAGAACCTCACATCACAGCAAATAAGCTTGAATGGAT +TGACCCAGATGGAAATACAAGAGACCATGTAAATCTTGTCTTAAATAGAGATGTTTCATT +TCAGGATTTAAGTGATAACCCCTGCAAAGTAGACTTGCACACACAAGCAATAGAAGGGGC +ATGGGGTTCTGGTGTCGGGTTTACACTTACATGTACTGTCGGATTAACAGAGTGCCCGAG +TTTTATGACATCAATTAAAGCATGTGACCTTGCTATGTGTTATGGATCAACAGTAGCAAA +CCTTGCCAGAGGCTCTAATACAGTGAAAGTAGTTGGTAAGGGAGGTCATTCAGGGTCTTC +ATTTAAATGCTGTCATGATACAGATTGCTCCTCTGAGGGTCTTCTTGCATCAGCCCCACA +TCTTGAGAGAGTAACAGGCTTCAATCAAATCGATTCAGATAAGGTTTATGATGATGGTGC +ACCACCTTGCACTTTCAAATGCTGGTTCACCAAGTCAGGTGAATGGCTTCTTGGGATCTT +AAACGGGAACTGGATTGTTGTTGTAGTGCTTATTGTGATACTCATTCTCTCCATCATAAT +GTTCAGTGTTCTCTGCCCCAGGAGAGGACACAAGAAAACTGTTTAAGCATTAACCTCAAA +TCCTACATTAGATTATATACATATATACATTTATACACTTCTTCATATTTAGCTGCACTA +AGATATTAATAAACTCTAGTTATTGACTTTATAAGATTATTATGGAACTAACCCCACTTA +AAAAAAACAAATACTTTACTCATATATAACTCCATATTCTCTTACCGAGGATTTTGT +>MN258204 +TAGTAGACTCCGCAAGAAGAAGCAAAAAATTAAAGAAGTGAGTTTAAAATGGAAGGGTGG +TATCTGGTTGCTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCCAAAACCATTTAT +GAGCTTAAAATGGAATGCCCGCACACTGTGGGTCTAGGTCAAGGTTACATTATTGGCTCA +ACAGAATTGGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTTGAGAGCTCTTGT +AATTTTGATCTTCATACAACGTCTATGGCCCAGAAGAGTTTCACCCAAGTTGAATGGAGA +AAGAAAAGTGACACAACTGACACCACAAATGCTGCATCCACCACCTTTGAAGCACAGACC +AAAACTGTTAACCTTAGAGGGACCTGTATATTGGCACCTGAACTTTATGACACGTTGAAG +AAAGTAAAGAAGACAGTCCTGTGTTATGATTTAACATGCAATCAGACACATTGTCAGCCA +ACTGTCTATCTGATTGCACCTGTGCTGACATGCATGTCAATTAGAAGTTGTATGGCTAGT +GTTTTTACAAGCAGGATTCAGGTGATCTATGAAAAGACACATTGTGTAACAGGTCAGCTG +ATTGAGGGTCAGTGTTTCAACCCAGCACATACATTGACACTATCTCAACCTGCTCACACT +TATGACACTGTCACCCTGCCTATCTCTTGTTTTCTCACACCAAAGAAGTCGGAGCAGCTA +AAAGTTATAAAAACATTTGAAGGAATTCTGACAAAGACAGGTTGCACAGAGAATGCATTG +CAAGGTTATTATGTATGTTTTTTAGGGAGTCATTCAGAACCTTTAATTGTTCCAAGTCTG +GAGGACATACGGTCTGCTGAAGTTGTCAGTAGGATGCTTGTACACCCTAGGGGAGAGGAC +CATGACGCCATACAAAATTCACAGAGTTACTTGAGAATAGTGGGACCTATCACAGCAAAA +GTGCCATCAACTAGTTCCACAGATACCCTAAAAGGGACAGCCTTTGCAGGCGTCCCAATG +TATAGCTCCTTATCGACACTAGTCAGGAATGCAGACCCAGAATTTGTGTTTTCTCCAGGG +ATCATACCGGAATCTAACCATAGTATATGTGATAAGAAAACAGTACCTATCACATGGACA +GGCTACCTACCAATATCAGGTGAGATGGAAAAAGTGACTGGATGTACAGTTTTCTGTACA +CTGGCGGGACCTGGTGCTAGCTGTGAAGCCTATTCTGAGAATGGTATCTTCAACATTAGT +TCCCCAACATGTCTTGTAAACAAAGTCCAGAGATTTAGAGGGTCTGAACAGAAGATAAAT +TTTATCTGCCAGCGGGTAGATCAGGATGTCGTTGTATACTGCAATGGGCAGAAGAAAGTC +ATATTAACCAAAACATTGGTTATTGGACAATGTATTTATACATTCACAAGCCTATTTTCA +TTGATGCCTGATGTAGCCCACTCACTAGCTGTAGAATTATGCGTCCCAGGATTGCATGGA +TGGGCCACTGTCATGCTTTTATCAACCTTCTGCTTCGGGTGGATCTTGATTCCTGCAGTA +ACATTAATAATATTAAAATGTCTGAGGGTTTTGACATTTTCTTGTTCCCATTACACTAAT +GAGTCAAAATTTAAATTCATCCTGGAAAAAGTTAAAGTTGAATACCAGAAGACTATGGGA +TCAATGGTGTGTGATGTATGTCATCATGAGTGTGAAACAGCAAAGGAACTTGAATCACAT +AGACAAAGTTGCATTAATGGACAATGCCCTTACTGCATGACAATAACTGAAGCAACCGAG +AGTGCCTTGCAAGCCCATTATTCCATCTGTAAATTGACAGGGAGATTTCAGGAGGCACTA +AAAAAGTCACTTAAGAAGCCAGAGGTAAAAAAAGGTTGTTACAGAACACTAGGGGTATTT +CGCTACAAAAGTAGATGTTATGTGGGTTTGGTATGGTGCCTATTATTGATATGCGAAATT +GTTATTTGGGCTGCAAGTGCAGAGACTCCATTAATGGAGTCAGGTTGGTCAGATACAGCT +CATGGTGTTGGTGAGATTCCAATGAAGACAGACTTAGAGCTAGACTTTTCATTGCCTTCT +TCATCCTCTTATAGTTACAGGAGAAAGCTCACAAACCCAGCTAACAAGGAAGAGTCTATT +CCCTTCCACTTCCAGATGGAAAAACAAGTAATTCATGCTGAGATCCAACCCTTAGGTCAT 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+AATAATATTAAAATGTCTAAGGGTTTTAACATTTTCTTGTTCCCATTACACTAATGAGTC +AAAATTTAAATTCATCCTGGAAAAAGTTAAAGTTGAATACCAGAAGACTATGGGATCAAT +GGTGTGTGATGTATGTCATCACGAGTGTGAGACAGCAAAGGAACTTGAGTCACATAGACA +AAGTTGCATTAATGGACAATGCCCTTATTGCATGACGATAACTGAAGCAACTGAAAGTGC +CTTGCAAGCCCATTATTCTATTTGTAAATTGACAGGAAGATTTCAGGAGGCACTAAAAAA +GTCACTTAAAAAGCCAGAGGTAAAAAAAGGTTGTTATAGAACACTTGGGGTATTTCGATA +CAAAAGTAGGTGTTATGTGGGTTTGGTATGGTGCCTATTGTTGACATGTGAAATTGTTAT +TTGGGCCGCAAGTGCAGAGACTCCACTAATGGAATCAGGCTGGTCAGATACAGCTCATGG +TGTTGGTGAGATTCCAATGAAGACAGACTTAGAGCTAGACTTTTCGCTGCCTTCTTCATC +CTCTTATAGTTACAGGAGAAAGCTCACAAACCCGGCTAATAAGGAAGAGTCTATCCCCTT +CCACTTCCAGATGGAAAAACAAGTGATTCATGCTGAGATCCAACCCTTAGGTCATTGGAT +GGATGCAACATTTAATATTAAGACTGCATTTCATTGTTATGGTGCATGCCAGAAATACTC +TTATCCATGGCAAACATCTAAGTGCTTCTTTGAAAAAGACTACCAGTATGAAACAGGCTG +GGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGGTGTACTGCTTGTGGTGTTTA +TCTTGATAAACTAAAATCTGTGGGAAAGGCCTATAAGATAATTTCTTTAAAATACACCAG +GAAGGTTTGCATTCAGTTAGGAACAGAACAAACATGCAAGCATATTGATGCAAATGATTG +TTTAGTAACACCATCTGTGAAGGTCTGCATAGTGGGCACAGTTTCTAAACTCCAACCATC +TGATACTCTCTTGTTCTTAGGTCCACTAGAACAGGGGGGGATCATCCTTAAACAATGGTG +CACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCTACTCCCAGTGGTATGAG +GTGTCCAGAACACACTGGATCATTCAGGAAAATTTGTGGTTTTGCCACTACACCAGTTTG +TGAATATCAAGGAAATACCATTTCTGGATACAAAAGAATGATGGCAACAAAAGATTCATT +CCAATCATTTAACTTAACAGAACCTCACATCACAACAAATAAGCTTGAATGGATTGACCC +AGATGGAAACACAAGAGACCATGTCAACCTTGTCTTAAATAGAGATGTTTCATTTCAGGA +TTTAAGTGATAACCCTTGTAAAGTGGACTTACACACACAAGCAATAGAAGGGGCATGGGG +TTCTGGTGTAGGGTTTACACTCACATGTACTGTTGGATTAACAGAATGCCCGAGTTTTAT +GACATCAATTAAGGCATGTGATCTTGCTATGTGTTATGGATCAACAGTGGCAAATCTTGC +CAGGGGCTCTAATACAGTGAAGGTAGTTGGCAAGGGAGGTCATTCAGGGTCTTCATTTAA +ATGCTGTCATGATACAGATTGTTCTGCTGAGGGTCTACTTGCATCAGCCCCACATCTTGA +GAGAGTGACAGGCTTCAATCAAATCGATTCAGATAAGGTTTATGATGATGGTGCACCACC +TTGCACATTCAAATGCTGGTTCACCAAGTCAGGTGAGTGGCTCCTTGGGATCTTAAACGG +GAATTGGATTGTTGTTGTAGTGCTTGTTGTGATACTCATTCTCTCTATCATAATGTTCAG +TATTCTGTGCCCCAGGAGAGGACACAAGAAAACTGTCTAAGCATTAACTGCAAGTCCTAC +AATAGATTATATACATTTATGCACTTTTTCATATTTAGCTGCACTAAGATATTAATAAAC +TCTAGTTATTGACTTTATAAGATTATTATGGAACTAACCTCACTTAAAAAAAACAAATAC +TTTACTCATATATAACTCCATATTCTCTTACCGAGGATTTTGTTCCTGCGGAGC diff --git a/data_output/nextstrain/orthohantavirus/andv/m/unreleased/tree.json b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/tree.json new file mode 100644 index 000000000..4e932fdea --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/tree.json @@ -0,0 +1 @@ +{"version": "v2", "meta": {"title": "Andes Virus M Segment (ANDV)", "updated": "2026-05-12", "build_url": "https://github.com/nextstrain/andv", "data_provenance": [{"name": "Pathoplexus", "url": "https://pathoplexus.org/"}], "maintainers": [{"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}], "display_defaults": {"map_triplicate": false, "color_by": "outbreak", "distance_measure": "div"}, "genome_annotations": {"GPC": {"end": 3468, "seqid": "defaults/m/reference.gb", "start": 52, "strand": "+", "type": "CDS"}, "Gc": {"end": 3468, "seqid": "defaults/m/reference.gb", "start": 2005, "strand": "+", "type": "CDS"}, "Gn": {"end": 2004, "seqid": "defaults/m/reference.gb", "start": 52, "strand": "+", "type": "CDS"}, "nuc": {"end": 3671, "start": 1, "strand": "+", "type": "source"}}, "colorings": [{"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "date", "title": "Collection Date", "type": "categorical"}, {"key": "region", "title": "Region", "type": "categorical", "scale": [["Africa", "#CEB541"], ["Europe", "#E39B39"], ["South America", "#E56C2F"]]}, {"key": "country", "title": "Country", "type": "categorical"}, {"key": "division", "title": "Admin Division", "type": "categorical"}, {"key": "host", "title": "Host", "type": "categorical"}, {"key": "abbr_authors", "title": "Authors", "type": "categorical"}, {"key": "dataUseTerms", "title": "Data use terms", "type": "categorical"}, {"key": "restrictedUntil", "title": "Restricted Until", "type": "categorical"}, {"key": "date_released", "title": "Release Date", "type": "categorical"}, {"key": "length", "title": "Length", "type": "continuous"}, {"key": "INSDC_accession", "title": "INSDC Accession", "type": "categorical"}, {"key": "PPX_accession", "title": "Pathoplexus Accession", "type": "categorical"}, {"key": "institution", "title": "Author Affiliations", "type": "categorical"}, {"key": "totalAmbiguousNucs", "title": "Ambiguous Nucleotides", "type": "continuous"}, {"key": "outbreak", "title": "outbreak", "type": "categorical"}], "filters": ["country", "division", "host", "abbr_authors", "clade_membership"], "geo_resolutions": [{"key": "country", "demes": {"Brazil": {"latitude": -10.3333332, "longitude": -53.1999999}, "Argentina": {"latitude": -37.052315, "longitude": -64.869142}, "Chile": {"latitude": -31.7613364, "longitude": -71.3187696}, "Netherlands": {"latitude": 52.1326, "longitude": 5.2913}, "Switzerland": {"latitude": 46.8182, "longitude": 8.2275}, "South Africa": {"latitude": -28.8166235, "longitude": 24.991639}}}], "panels": ["tree", "entropy"], "extensions": {"nextclade": {"clade_node_attrs": [{"name": "outbreak", "displayName": "Outbreak", "description": "Annotation of recent outbreaks (to be refined)", "skipAsReference": false}]}}}, "tree": {"name": "NODE_0000000", "node_attrs": {"div": 0, "outbreak": {"value": "unassigned"}}, "branch_attrs": {"mutations": {"nuc": ["A32C", "T34G", "G38A", "G41A", "G45T", "T47G", "T48A", "A51G", "C67T", "G70A", "T75C", "C76T", "T78G", "A89C", "G93A", "G114A", "G126A", "T129C", "C147T", "T156A", "C159A", "C171T", "C174T", "A186T", "A192T", "T195C", "T202C", "G211A", "T219A", "A223T", "C231A", "G234A", "T240A", "T252C", "T255C", "G271A", "C273T", "G276A", "G279A", "T282C", "T284A", "C285T", "C288T", "A303G", "A309G", "C315A", "T324C", "C327A", "A330G", "G339A", "C342A", "T345A", "C348A", "G355T", "A360G", "A361G", "T363C", "T372A", "A379C", "T387C", "A391G", "C394T", "C400T", "T402C", "C408T", "A429T", "A438T", "C441A", "G444C", 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"MEGWYLVVLGVCYTLTLAMPKTIYELKMECPHTVGLGQGYIIGSTELGLISIEAASDIKLESSCNFDLHTTSMAQKSFTQVEWRKKSDTTDTTNAASTTFEAQTKTVNLRGTCILAPELYDTLKKVKKTVLCYDLTCNQTHCQPTVYLIAPVLTCMSIRSCMASVFTSRIQVIYEKTHCVTGQLIEGQCFNPAHTLTLSQPAHTYDTVTLPISCFFTPKKSEQLKVIKTFEGILTKTGCTENALQGYYVCFLGSHSEPLIVPSLEDIRSAEVVSRMLVHPRGEDHDAIQNSQSHLRIVGPITAKVPSTSSTDTLKGTAFAGVPMYSSLSTLVRNADPEFVFSPGIVPESNHSTCDKKTVPITWTGYLPISGEMEKVTGCTVFCTLAGPGASCEAYSENGIFNISSPTCLVNKVQRFRGSEQKINFICQRVDQDVVVYCNGQKKVILTKTLVIGQCIYTFTSLFSLMPDVAHSLAVELCVPGLHGWATVMLLSTFCFGWVLIPAVTLIILKCLRVLTFSCSHYTNESKFKFILEKVKIEYQKTMGSMVCDVCHHECETAKELESHRQSCINGQCPYCMTITEATESALQAHYSICKLTGRFQEALKKSLKKPEVKKGCYRTLGVFRYKSRCYVGLVWCLLLTCEIVIWAASAETPLMESGWSDTAHGVGEIPMKTDLELDFSLPSSSSYSYRRKLTNPANKEESIPFHFQMEKQVIHAEIQPLGHWMDATFNIKTAFHCYGACQKYSYPWQTSKCFFEKDYQYETGWGCNPGDCPGVGTGCTACGVYLDKLKSVGKAYKIISLKYTRKVCIQLGTEQTCKHIDANDCLVTPSVKVCIVGTVSKLQPSDTLLFLGPLEQGGIILKQWCTTSCAFGDPGDIMSTPSGMRCPEHTGSFRKICGFATTPVCEYQGNTISGYKRMMATKDSFQSFNLTEPHITTNKLEWIDPDGNTRDHVNLVLNRDVSFQDLSDNPCKVDLHTQAIEGAWGSGVGFTLTCTVGLTECPSFMTSIKACDLAMCYGSTVTNLARGSNTVKVVGKGGHSGSSFKCCHDTDCSSEGLLASAPHLERVTGFNQIDSDKVYDDGAPPCTFKCWFTKSGEWLLGILNGNWIVVVVLVVILILSIIMFSVLCPRRGHKKTV*", "Gc": "ETPLMESGWSDTAHGVGEIPMKTDLELDFSLPSSSSYSYRRKLTNPANKEESIPFHFQMEKQVIHAEIQPLGHWMDATFNIKTAFHCYGACQKYSYPWQTSKCFFEKDYQYETGWGCNPGDCPGVGTGCTACGVYLDKLKSVGKAYKIISLKYTRKVCIQLGTEQTCKHIDANDCLVTPSVKVCIVGTVSKLQPSDTLLFLGPLEQGGIILKQWCTTSCAFGDPGDIMSTPSGMRCPEHTGSFRKICGFATTPVCEYQGNTISGYKRMMATKDSFQSFNLTEPHITTNKLEWIDPDGNTRDHVNLVLNRDVSFQDLSDNPCKVDLHTQAIEGAWGSGVGFTLTCTVGLTECPSFMTSIKACDLAMCYGSTVTNLARGSNTVKVVGKGGHSGSSFKCCHDTDCSSEGLLASAPHLERVTGFNQIDSDKVYDDGAPPCTFKCWFTKSGEWLLGILNGNWIVVVVLVVILILSIIMFSVLCPRRGHKKTV*", "Gn": "MEGWYLVVLGVCYTLTLAMPKTIYELKMECPHTVGLGQGYIIGSTELGLISIEAASDIKLESSCNFDLHTTSMAQKSFTQVEWRKKSDTTDTTNAASTTFEAQTKTVNLRGTCILAPELYDTLKKVKKTVLCYDLTCNQTHCQPTVYLIAPVLTCMSIRSCMASVFTSRIQVIYEKTHCVTGQLIEGQCFNPAHTLTLSQPAHTYDTVTLPISCFFTPKKSEQLKVIKTFEGILTKTGCTENALQGYYVCFLGSHSEPLIVPSLEDIRSAEVVSRMLVHPRGEDHDAIQNSQSHLRIVGPITAKVPSTSSTDTLKGTAFAGVPMYSSLSTLVRNADPEFVFSPGIVPESNHSTCDKKTVPITWTGYLPISGEMEKVTGCTVFCTLAGPGASCEAYSENGIFNISSPTCLVNKVQRFRGSEQKINFICQRVDQDVVVYCNGQKKVILTKTLVIGQCIYTFTSLFSLMPDVAHSLAVELCVPGLHGWATVMLLSTFCFGWVLIPAVTLIILKCLRVLTFSCSHYTNESKFKFILEKVKIEYQKTMGSMVCDVCHHECETAKELESHRQSCINGQCPYCMTITEATESALQAHYSICKLTGRFQEALKKSLKKPEVKKGCYRTLGVFRYKSRCYVGLVWCLLLTCEIVIWAASA", "nuc": "TAGTAGTAGACTCCGCAAGAAGAAGCAAAAAATTAAAGAAGTGAGTTTAAAATGGAAGGGTGGTATCTGGTTGTTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCCAAGACCATTTATGAGCTTAAAATGGAATGCCCGCACACTGTGGGTCTCGGTCAAGGTTACATCATTGGCTCAACAGAACTAGGTTTGATCTCAATTGAGGCTGCATCTGATATAAAGCTCGAGAGCTCTTGCAATTTTGATCTTCATACAACATCTATGGCCCAGAAGAGTTTCACCCAAGTTGAATGGAGAAAGAAAAGTGACACAACTGATACCACAAATGCTGCGTCCACTACCTTTGAAGCACAAACTAAAACTGTTAACCTTAGAGGGACTTGTATACTGGCACCTGAACTCTATGATACATTGAAGAAAGTAAAAAAGACAGTCCTGTGCTATGATCTAACATGTAATCAAACACATTGTCAGCCAACTGTCTATCTGATTGCACCTGTATTGACATGCATGTCAATAAGAAGTTGTATGGCTAGTGTGTTTACAAGCAGGATTCAGGTGATTTATGAAAAGACACATTGTGTAACAGGTCAGCTGATTGAGGGTCAGTGTTTCAACCCAGCACACACATTGACATTATCTCAGCCTGCTCACACTTATGATACTGTCACCCTTCCTATCTCTTGTTTTTTCACACCAAAGAAGTCGGAGCAACTAAAAGTTATAAAAACATTTGAAGGAATTCTGACGAAGACAGGTTGCACGGAGAATGCATTGCAGGGTTATTATGTGTGTTTTTTAGGGAGTCATTCAGAACCTTTAATTGTTCCGAGTTTGGAGGACATACGGTCTGCTGAAGTTGTTAGTAGGATGCTTGTACACCCTAGGGGAGAAGACCATGATGCCATACAGAATTCACAAAGTCACTTAAGAATAGTGGGACCTATCACAGCAAAAGTGCCATCAACTAGTTCCACAGATACCCTAAAGGGGACAGCCTTTGCAGGCGTCCCAATGTATAGCTCTTTATCTACACTAGTCAGAAATGCAGACCCAGAATTTGTATTTTCTCCAGGTATAGTACCTGAATCTAATCACAGTACATGTGATAAGAAGACAGTACCTATCACATGGACAGGCTACCTACCAATATCAGGTGAGATGGAAAAAGTGACTGGATGTACAGTTTTTTGTACACTAGCAGGACCTGGTGCTAGTTGTGAGGCCTATTCTGAAAATGGTATATTTAACATCAGTTCTCCAACATGTCTTGTAAACAAAGTCCAAAGATTTCGTGGATCTGAACAGAAAATAAATTTTATCTGTCAGCGGGTAGATCAGGATGTTGTTGTATACTGCAATGGGCAAAAGAAAGTCATATTAACCAAAACTTTGGTTATTGGGCAGTGTATTTATACATTCACAAGCCTATTTTCATTGATGCCTGATGTAGCCCACTCATTGGCTGTAGAATTATGTGTCCCGGGATTACATGGATGGGCCACTGTCATGCTTCTATCAACATTCTGCTTTGGGTGGGTCTTGATTCCTGCGGTCACATTAATAATATTAAAGTGTCTAAGGGTTTTGACGTTTTCTTGTTCCCATTACACTAATGAGTCAAAATTTAAATTCATCCTGGAAAAAGTTAAAATTGAATACCAAAAGACTATGGGATCAATGGTGTGCGATGTATGTCATCATGAGTGTGAAACAGCAAAAGAACTTGAATCACATAGACAGAGTTGTATCAATGGACAATGTCCTTATTGCATGACAATAACTGAAGCAACTGAAAGTGCCTTGCAAGCCCATTATTCCATTTGTAAATTGACAGGAAGATTTCAGGAGGCACTGAAAAAGTCACTTAAAAAGCCAGAGGTAAAAAAAGGTTGTTACAGAACACTCGGGGTATTTAGATATAAAAGTAGATGTTATGTGGGTTTGGTATGGTGCCTATTGTTGACATGTGAAATTGTTATTTGGGCCGCAAGTGCAGAGACTCCACTAATGGAGTCAGGCTGGTCAGATACGGCTCATGGTGTTGGTGAGATTCCAATGAAGACAGACCTCGAGCTGGACTTTTCACTGCCTTCTTCATCCTCTTACAGTTATAGGAGAAAGCTCACAAACCCAGCCAATAAAGAAGAGTCTATTCCCTTCCACTTCCAGATGGAAAAACAAGTAATTCATGCTGAAATCCAACCCCTGGGTCATTGGATGGATGCGACATTTAATATTAAGACTGCATTTCATTGTTATGGTGCATGCCAGAAATACTCTTATCCATGGCAGACATCTAAGTGCTTCTTTGAAAAGGACTACCAGTATGAAACAGGCTGGGGCTGTAATCCTGGTGACTGCCCAGGGGTTGGGACTGGATGCACTGCTTGTGGTGTTTATCTCGATAAACTAAAATCTGTTGGGAAGGCCTATAAGATAATTTCTTTAAAATATACCAGAAAGGTTTGTATTCAGTTAGGAACAGAACAAACTTGCAAGCATATTGATGCAAATGATTGTTTAGTGACACCATCTGTGAAAGTTTGCATAGTGGGCACAGTTTCAAAACTTCAACCATCTGATACTCTTTTGTTCTTAGGTCCACTAGAACAAGGGGGAATCATTCTTAAGCAATGGTGCACAACATCATGTGCATTTGGGGACCCTGGTGATATCATGTCCACTCCCAGTGGTATGAGGTGTCCAGAGCACACTGGATCATTTAGGAAAATTTGCGGTTTTGCTACTACACCAGTTTGTGAATATCAAGGAAATACCATTTCTGGATATAAAAGAATGATGGCAACAAAAGATTCATTCCAATCATTTAACTTAACAGAACCTCACATCACAACAAACAAGCTTGAATGGATCGACCCAGATGGGAATACAAGAGACCACGTAAACCTTGTCTTAAATAGAGATGTCTCATTTCAGGATTTAAGTGATAACCCCTGTAAAGTAGACCTACACACACAAGCAATAGAAGGGGCATGGGGTTCTGGTGTAGGGTTTACACTCACATGTACTGTCGGATTAACAGAGTGCCCAAGTTTTATGACATCAATTAAGGCATGTGACCTAGCTATGTGTTATGGATCAACAGTAACAAACCTTGCCAGGGGCTCTAATACAGTGAAAGTAGTTGGTAAAGGAGGCCATTCAGGGTCCTCATTTAAATGCTGTCATGATACAGATTGCTCCTCTGAAGGTTTACTTGCATCAGCCCCTCATCTTGAGAGGGTAACAGGATTCAATCAAATTGATTCAGATAAGGTTTATGATGATGGTGCACCACCTTGCACATTCAAATGCTGGTTCACTAAGTCAGGTGAGTGGCTTCTTGGGATCTTAAACGGGAATTGGATTGTTGTTGTAGTGCTTGTTGTGATACTCATTCTCTCTATCATAATGTTCAGTGTTTTGTGTCCCAGGAGAGGGCACAAGAAAACTGTCTAAGCATTGACCTCAACTCCTACATTAGATCATATACATTTATGCACTTCCTCATATTTAGCTGCACTAAGATATTAATAAACTCTAGTTATTGACTTTATAAGATTATTATGGAACTAACCTCACTTAAAAAAAACAAATACTTTACTCATATATAACTCCATATTCTCTTACCGAGGCTTTTGTTCCTGCGGAGCATACTACTA"}} \ No newline at end of file diff --git a/data_output/nextstrain/orthohantavirus/andv/s/unreleased/CHANGELOG.md b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/CHANGELOG.md new file mode 100644 index 000000000..894bac942 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/CHANGELOG.md @@ -0,0 +1,16 @@ +## Unreleased + +- update outbreak name to 2026-Hondius +- make nucleotide default sequence view. +- add GPC amino acid substitutions + + +## 2026-05-11T18:59:50Z + +- Updating Nextclade dataset with the latest sequences and metadata from Pathoplexus +- Include 2026 outbreak sequences +- add 2026 outbreak annotation + +## 2026-05-08T21:17:05Z + + - initial release diff --git a/data_output/nextstrain/orthohantavirus/andv/s/unreleased/README.md b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/README.md new file mode 100644 index 000000000..8d08817ca --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/README.md @@ -0,0 +1,18 @@ +# Andesvirus segment S dataset + +| Key | Value | +| :-- | :-- | +| name | Andes virus segment S Tree | +| authors | [Nextstrain](https://nextstrain.org) | +| reference | [NC_003466](www.ncbi.nlm.nih.gov/nuccore/NC_003466) | +| workflow | https://github.com/nextstrain/andv/tree/main/nextclade | +| path | `nextstrain/orthohantavirus/andv/s` | + +This dataset aligns sequences to the RefSeq entry [NC_003466](www.ncbi.nlm.nih.gov/nuccore/NC_003466) and places the sequences onto a tree build using sequences from INSDC and Pathoplexus. +Sequences from the 2026 outbreak were rapidly shared by several laboratories around the world to facilitate outbreak investigations. These data have been released under RESTRICTED USE terms on Pathoplexus. +We refer to the [summary of the initial investigations by this collaboration on virological.org](https://virological.org/t/preliminary-analysis-of-orthohantavirus-andesense-virus-sequences-from-a-cruise-ship-related-cluster-may-2026/1029) for further details. + + +## What are Nextclade datasets + +Read more about Nextclade datasets in the Nextclade documentation: https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html diff --git a/data_output/nextstrain/orthohantavirus/andv/s/unreleased/dataset.zip b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/dataset.zip new file mode 100644 index 0000000000000000000000000000000000000000..00efe4c982d0b9f8eecba668f15203bbaf234ba0 GIT binary patch literal 244944 zcmeFa%X8dEw&$nujO`FT4sRT@b3_f>i+eo;h+n-+3SCFBNR=p2Bt?|S?&)FZ7J(vJ zS0IWP1yC)C?SH{buf4E0-Z{d1uf6cf8!sIGFTD2WdmdR;V4(ntP^()aA3*+onR#CM 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+GATGATCATCTAAAGGAAAAATCATCTCTGAGATATGGGAATGTCCTGGATGTTAATTCA +ATTGATTTGGAAGAACCGAGTGGACAGACTGCTGATTGGAAGGCTATAGGAGCATACATC +TTAGGGTTTGCAATTCCGATCATCCTAAAGGCCTTATACATGCTGTCAACCCGTGGGAGA +CAAACTGTGAAAGACAACAAAGGGACCAGGATAAGGTTTAAGGATGATTCTTCCTTTGAA +GAAGTCAATGGGATACGTAAACCAAAACACCTTTACGTCTCAATGCCAACTGCACAGTCC +ACTATGAAGGCTGAAGAAATCACGCCAGGACGATTTAGGACAATTGCTTGTGGCCTTTTT +CCAGCACAGGTCAAAGCCCGAAATATAATAAGTCCTGTAATGGGAGTAATTGGATTTGGC +TTCTTTGTAAAGGATTGGATGGATCGGATAGAAGAGTTTCTGGCTGCAGAGTGTCCATTC +TTACCTAAGCCAAAGGTCGCCTCAGAAGCCTTCATGTCTACCAATAAGATGTATTTTCTG +AACAGACAGAGACAAGTCAATGAATCTAAGGTTCAAGATATTATCGATTTGATAGACCAT +GCTGAGACCGAGTCTGCTACCTTGTTTACAGAGATTGCAACACCCCATTCAGTCTGGGTG +TTTGCATGTGCACCTGACCGGTGCCCTCCAACTGCATTGTATGTTGCAGGGGTACCGGAA +CTTGGTGCATTTTTTTCTATCCTTCAGGACATGCGTAATACCATCATGGCATCTAAATCT +GTAGGGACTGCAGAAGAGAAGCTAAAGAAAAAATCTGCCTTCTACCAATCATACCTAAGA +AGGACACAATCTATGGGAATCCAACTGGACCAGAAGATCATAATCCTTTACATGCTATCA +TGGGGTAAAGAAGCTGTGAATCACTTCCATCTTGGTGATGATATGGACCCTGAACTCAGG +CAGCTAGCACAATCTCTGATCGATACTAAGGTGAAGGAGATCTCCAACCAAGAGCCACTT +AAGTTGTAGGTGCTTAATGAAATCATGATTGAAGAAAGACTTTCCGGGCTTGTGCCACAT +ATTAATCATCTCAGGACCTATCCTTAATGTGATTAATAGGGTTTTATTATAAGGGCAGTT +AATGGGGTTGGTTACTAACTATGGGTAAGGGTTCATTACCATTTTTGCACTAGGGTTAAA +GGGCCACTACATTGTATTTGCACTAAGGGAAATGGGAGGTGGGTTAGTTTGTATTTAGTT +GTTAAGTTTTTTATAATCATATGTTAATGAGGAATTAGCTATATGATATCACTGATTGAT +TGGCTATTTTTAGGTTAAGTAATTGTAGTTAAATAGTTGTGTTAAGTTAGTATGTTAAGG +TTTATAGGTTAAGATTTACTAACAATCATATTATGTCATTAGATGTAAATTTCATTCCTG +GCTTGCTTCTGCTTTCGCATTGCTAACCTACAACAAGACTACCTCACCCACTACCCCTCC +CCTATTCTACCTCAACACATACTACCTCACATTTGATTTTTCTTGATTGCTTTTCAAGGA +GCATACTACTA diff --git a/data_output/nextstrain/orthohantavirus/andv/s/unreleased/sequences.fasta b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/sequences.fasta new file mode 100644 index 000000000..829c4f9b0 --- /dev/null +++ b/data_output/nextstrain/orthohantavirus/andv/s/unreleased/sequences.fasta @@ -0,0 +1,293 @@ +>EU241691 +GACCAAACTCGGAGAACTTAAGAGGCAGCTTGCGGATTTGGTGGCAGCTCAGAAACTGGC +TACAAAACCAGTTGATCCAACAGGGCTTGAGCCTGATGATCATTTAAAGGAGAAGTCATC +TTTGAGATATGGGAATGTCCTGGATGTTAATTCAATTGATCTGGAAGAGCCAAGTGGACA +GACTGCTGACTGGAAAGCAATAGGAGCATATATCCTAGGATTTGCAATCCCAATCATCTT +AAAAGCCCTATACATGCTGTCAACTCGTGGGAGACAAACTGTGAAGGACAACAAGGGGAC +CCGGATAAGATTCAAGGATGATTCCTCCTTTGAAGAGGTGAACGGGATACGCAAACCAAA +ACATCTTTATGTCTCAATGCCAACTGCACAATCCACAATGAAAGCTGAAGAGATCACACC +AGGGCGGTTCAGGACAATTGCTTGTGGCCTTTTTCCAGCACAGGTCAAAGCTAGGAACAT +AATAAGCCCTGTAATGGGTGTAATTGGGTTTGGTTTCTTTGTGAAAGACTGGATGGACCG +GATAGAAGAATTCTTGGCTGCAGAGTGCCCATTCTTGCCTAAGCCAAAGGTAGCTTCTGA +ATCCTTTATGTCTACCAACAAGATGTATTTTCTAAACAGGCAAAGGCAAGTCAATGAGTC +CAAGGTTCAAGATATTGTTGACTTGATAGATCATGCTGAGACTGAGTCTGCTACCTTGTT +CACGGAGATTGCAACACCCCATTCAGTCTGGGTGTTTGCATGTGCACCTGACCGATGCCC +TCCAACTGCATTATATGTTGCAGGTGTTCCGGAATTAGGTGCATTTTTTTCTATTCTTCA +GGATATGCGGAATACTATCATGGCATCCAAGTCCGTAGGGACGGCAGAGGAAAAGCTGAA +GAAAAAATCTGCATTTTATCAATCTTA +>EU241698 +GACCAAACTCGGGGAACTCAAGAGGCAACTTGCAGATCTGGTGGCAGCTCAAAAATTGGC +TACAAAACCAGTTGATCCAACAGGGCTTGAGCCTGATGACCATCTGAAAGAGAAATCATC +TCTGAGATATGGGAATGTCCTGGATGTGAATTCAATTGATTTGGAAGAACCAAGTGGACA +GACTGCTGATTGGAAGGCTATAGGAGCATATATCTTAGGGTTTGCAATTCCGATCATACT +AAAAGCCCTATATATGCTATCAACCCGTGGGAGACAGACTGTGAAAGACAACAAAGGAAC +CAGGATAAGGTTTAAGGATGATTCTTCCTTTGAAGAGGTCAACGGGATACGTAAGCCAAA +ACACCTTTATGTCTCAATGCCAACTGCACAATCTACTATGAAGGCTGAAGAAATCACACC +AGGACGGTTTAGGACAATTGCTTGTGGCCTCTTTCCAGCACAGGTCAAAGCTCGAAATAT +AATAAGTCCTGTGATGGGAGTAATTGGATTTGGCTTCTTTGTAAAAGACTGGATGGATCG +GATAGAGGAATTCCTGGCTGCAGAGTGTCCATTCCTGCCTAAGCCAAAGGTTGCCTCAGA +AGCCTTCATGTCTACCAACAAGATGTACTTCCTGAACAGACAAAGACAAGTCAATGAATC +TAAGGTTCAAGACATTATTGATTTAATAGATCATGCTGAAACTGAGTCTGCTACCTTGTT +TACGGAAATTGCAACACCCCATTCAGTCTGGGTGTTTGCATGTGCGCCTGACCGGTGCCC +TCCGACTGCATTGTATGTTGCAGGGGTACCAGAACTTGGTGCATTCTTTTCCATTCTTCA +GGACATGCGTAATACCATCATGGCATCCAAATCTGTGGGGACTGCAGAAGAGAAGCTAAA +GAAGAAATCTGCTTTCTATCAATCTTACCTAAGAAGGACACAA +>FV536453 +TAGTAGTATGTTTTTTGAAAAGTAATTAAGAAAAATTAAATGTGAGGTAGTATGTGTTGA +GGTAGAATAGGGGAGGGGTAGTGGGTGAGGTAGTTTTGTTGTAGGTTAGTAATGTGAAAG +TAGAAGTAAGTTAGGAATGAAATTTATATTTAATGATATAATATGATTGTTAGTAAATTT +TAATTTATAAATTTTAATATATTAATTTAATATAATTATTTAATTATAATTATTTAATTT +AAAAATAGTTAATTAATTAGTGATATTATATAGTTAATTTTTTATTAATATATGATTATA +AAAAATTTAATAATTAAATATAAATTAATTTATTTTTTATTTTTTTTAGTGTAAATATAA +TGTAGTGGTTTTTTAATTTTAGTGTAAAAATGGTAATGAATTTTTATTTATAGTTAGTAA +TTAATTTTATTAATTGTTTTTATAATAAAATTTTATTAATTATATTAAGGATAGGTTTTG +AGATGATTAATATGTGGTATAAGTTTGGAAAGTTTTTTTTTAATTATGATTTTATTAAGT +ATTTATAATTTAAGTGGTTTTTGGTTGGAGATTTTTTTTATTTTAGTATTGATTAGAGAT +TGTGTTAGTTGTTTGAGTTTAGGGTTTATATTATTATTAAGATGGAAGTGATTTATAGTT +TTTTTATTTTATGATAGTATGTAAAGGATTATGATTTTTTGGTTTAGTTGGATTTTTATA +GATTGTGTTTTTTTTAGGTATGATTGGTAGAAGGTAGATTTTTTTTTTAGTTTTTTTTTT +GTAGTTTTTATAGATTTAGATGTTATGATGGTATTATGTATGTTTTGAAGGATAGAAAAA +AATGTATTAAGTTTTGGTATTTTTGTAATATATAATGTAGTTGGAGGGTATTGGTTAGGT +GTATATGTAAATATTTAGATTGAATGGGGTGTTGTAATTTTTGTAAATAAGGTAGTAGAT +TTGGTTTTAGTATGGTTTATTAAATTGATAATATTTTGAATTTTAGATTTATTGATTTGT +TTTTGTTTGTTTAGAAAATATATTTTATTGGTAGATATGAAGGTTTTTGAGGTGATTTTT +GGTTTAGGTAAGAATGGATATTTTGTAGTTAGAAATTTTTTTATTTGATTTATTTAATTT +TTTATAAAGAAGTTAAATTTAATTATTTTTATTATAGGATTTATTATATTTTGGGTTTTG +ATTTGTGTTGGAAAAAGGTTATAAGTAATTGTTTTAAATTGTTTTGGTGTGATTTTTTTA +GTTTTTATAGTGGATTGTGTAGTTGGTATTGAGATGTAAAGGTGTTTTGGTTTATGTATT +TTATTGATTTTTTTAAAGGAAGAATTATTTTTAAATTTTATTTTGGTTTTTTTGTTGTTT +TTTATAGTTTGTTTTTTATGGGTTGATAGTATGTATAAGGTTTTTAGGATGATTGGAATT +GTAAATTTTAAGATGTATGTTTTTATAGTTTTTTAATTAGTAGTTTGTTTATTTGGTTTT +TTTAAATTAATTGAATTAATATTTAGGATATTTTTATATTTTAGAGATGATTTTTTTTTT +AGATGATTATTAGGTTTAAGTTTTGTTGGATTAATTGGTTTTGTAGTTAATTTTTGAGTT +GTTATTAAATTTGTAAGTTGTTTTTTAAGTTTTTTGAGTTTGGTTTTTAATGTAGATATA +GTTGTTTGTTTATTTTGTAGTGTGTTTTTGTTAATGTTATTTGGGTTTATTTTTATTGTT +TTTTTGGTATTTTTAAGTTTTTGTTGAGTAGTTATGAGTTGTTGTTTGTGTGTTGTGATG +TTTTTTTGTAATTTTTGGAGGGTGTTTATTTTAGTTTTTGTAGTAGTAGTTTTTTAAGGA +GTTTATTATTA +>MN258238 +GTAGTAGACTCCTTGAGAAGCTACTGCTGCGAAAGCTGGAATGAGCACCCTCCAAGAACT +ACAAGAAAACATCACAGCACACGAACAACAGCTCGTGACTGCTCGGCAAAAGCTTAAAGA +TGCCGAGAAGGCGGTGGAGGTGGACCCGGATGACGTTAACAAGAGCACATTACAAAGTAG +ACGGGCAGCTGTGTCTACATTGGAGACCAAACTCGGGGAACTCAAGAGGCAACTTGCGGA +TCTGGTGGCAGCTCAAAAGTTGGCTACAAAACCAGTTGATCCAACAGGGCTTGAGCCTGA +TGACCATCTGAAAGAGAAATCATCTCTGAGATATGGGAATGTCCTGGATGTTAACTCAAT +CGACTTGGAAGAACCGAGTGGACAGACTGCTGATTGGAAGGCTATAGGAGCATATATCTT +AGGGTTTGCAATTCCGATCATACTAAAAGCCCTATATATGCTGTCAACCCGCGGGAGACA +AACTGTGAAAGACAATAAAGGAACTAGGATAAGGTTTAAGGATGATTCTTCCTTTGAAGA +AGTCAATGGGATACGTAAACCAAAACACCTTTATGTCTCAATGCCGACTGCACAGTCTAC +TATGAAGGCTGAAGAAATCACGCCAGGACGTTTTAGGACAATTGCTTGTGGCCTCTTCCC +AGCACAGGTCAAAGCTCGAAACATAATAAGCCCTGTAATGGGAGTGATTGGATTTGGCTT +CTTTGTGAAGGACTGGATGGATCGGATAGAGGAATTCCTGGCTGCAGAGTGTCCATTCTT +GCCTAAGCCAAAGGTTGCCTCAGAAGCCTTCATGTCTACCAACAAGATGTATTTCCTGAA +CAGACAGAGACAAGTCAATGAATCTAAGGTTCAAGACATTATTGATTTGATAGATCATGC +TGAAACTGAGTCTGCTACCTTGTTTACGGAAATTGCAACACCCCATTCAGTCTGGGTGTT +TGCATGTGCGCCTGACCGGTGCCCTCCAACTGCATTGTATGTCGCAGGGGTACCAGAACT +TGGTGCATTCTTTTCCATTCTTCAGGACATGCGTAATACCATCATGGCATCTAAATCTGT +AGGGACTGCAGAAGAGAAGCTAAAGAAGAAATCTGCCTTCTATCAATCTTACCTGAGAAG +AACACAATCTATGGGGATTCAACTGGACCAAAAGATCATAATCCTCTACATGCTTTCATG +GGGTAAAGAAGCTGTGAATCATTTCCATCTTGGTGATGATATGGACCCTGAACTAAGGCA +GCTAGCACAATCCCTGATCGACACCAAGGTGAAGGAGATCTCCAACCAAGAGCCACTAAA +GTTGTAAATACTTAATGAAAGTATGATGGAAGAGAGACTTTCCGGGCTTGTGCCACATAT +TAATCATCTCAGGATCTATCCTTAATGTGATTAATAGGGTCTTATTATAAGGGCGGTTAA +GGGGTCAGATACTAACTACGGGTAAGGGTTCATTACTATCCTTTTGCACTAGGGTTAAAG +GGCCACTACATTGTATTTGCACTACGGGAAATGGGAGGTGGGTTAGTCTATATTGTAGTT +GTTAAGTTTTTGTACTCATAGGTTTATAAGGAATCAGCTATATGAGATCACTGATTGATT +GGCTATTTTTTTTAGGTTAAGTGATTACATTTAAATAGTTGTGTTAAGTTTAGTGTGTTA +AGGCCTATAGGTTAAGATCTACTAACAATTATATTATGTCATTGGATGTAAATTTCGTTC +CTGGCTTGCTTCTGCTTTCGCATTGCTAACCTACAACATAACTACCTCATCCACACACCC +TCCCCTATTCTACCTCAACACATACTACCTCATATTTGATTTTTCTTGATTGCTTTTCAA +GGAGC +>MN258239 +CTCCTTGAGAAGCTACTGCTGCGAAAGCTGGAATGAGCACCCTCCAAGAACTACAAGAAA +ACATCACAGCACACGAACAACAGCTCGTGACTGCTCGGCAAAAGCTTAAAGATGCCGAGA +AGGCGGTGGAGGTGGACCCGGATGACGTTAACAAGAGCACATTACAAAGTAGACGGGCAG +CTGTGTCTACATTGGAGACCAAACTCGGGGAACTCAAGAGGCAACTTGCGGATCTGGTGG +CAGCTCAAAAGTTGGCTACAAAACCAGTTGATCCAACAGGGCTTGAGCCTGATGACCATC +TGAAAGAGAAATCATCTCTGAGATATGGGAATGTCCTGGATGTTAACTCAATCGACTTGG +AAGAACCGAGTGGACAGACTGCTGATTGGAAGGCTATAGGAGCATATATCTTAGGGTTTG +CAATTCCGATCATACTAAAAGCCCTATATATGCTGTCAACCCGCGGGAGACAAACTGTGA +AAGACAATAAAGGAACTAGGATAAGGTTTAAGGATGATTCTTCCTTTGAAGAAGTCAATG +GGATACGTAAACCAAAACACCTTTATGTCTCAATGCCGACTGCACAGTCTACTATGAAGG +CTGAAGAAATCACGCCAGGACGTTTTAGGACAATTGCTTGTGGCCTCTTCCCAGCACAGG +TCAAAGCTCGAAACATAATAAGCCCTGTAATGGGAGTGATTGGATTTGGCTTCTTTGTGA +AGGACTGGATGGATCGGATAGAGGAATTCCTGGCTGCAGAGTGTCCATTCTTGCCTAAGC +CAAAGGTTGCCTCAGAAGCCTTCATGTCTACCAACAAGATGTATTTCCTGAACAGACAGA +GACAAGTCAATGAATCTAAGGTTCAAGACATTATTGATTTGATAGATCATGCTGAAACTG +AGTCTGCTACCTTGTTTACGGAAATTGCAACACCCCATTCAGTCTGGGTGTTTGCATGTG +CGCCTGACCGGTGCCCTCCAACTGCATTGTATGTCGCAGGGGTACCAGAACTTGGTGCAT +TCTTTTCCATTCTTCAGGACATGCGTAATACCATCATGGCATCTAAATCTGTAGGGACTG +CAGAAGAGAAGCTAAAGAAGAAATCTGCCTTCTATCAATCTTACCTGAGAAGAACACAAT +CTATGGGGATTCAACTGGACCAAAAGATCATAATCCTCTACATGCTTTCATGGGGTAAAG +AAGCTGTGAATCATTTCCATCTTGGTGATGATATGGACCCTGAACTAAGGCAGCTAGCAC +AATCCCTGATCGACACCAAGGTGAAGGAGATCTCCAACCAAGAGCCACTAAAGTTGTAAA +TACTTAATGAAAGTATGATGGAAGAGAGACTTTCCGGGCTTGTGCCACATATTAATCATC +TCAGGATCTATCCTTAATGTGATTAATAGGGTCTTATTATAAGGGCGGTTAAGGGGTCAG +ATACTAACTACGGGTAAGGGTTCATTACTATCCTTTTGCACTAGGGTTAAAGGGCCACTA +CATTGTATTTGCACTACGGGAAATGGGAGGTGGGTTAGTCTATATTGTAGTTGTTAAGTT +TTTGTACTCATAGGTTTATAAGGAATCAGCTATATGAGATCACTGATTGATTGGCTATTT +TTTTTAGGTTAAGTGATTACATTTAAATAGTTGTGTTAAGTTTAGTGTGTTAAGGCCTAT +AGGTTAAGATCTACTAACAATTATATTATGTCATTGGATGTAAATTTCGTTCCTGGCTTG +CTTCTGCTTTCGCATTGCTAACCTACAACATAACTACCTCATCCACACACCCTCCCCTAT +TCTACCTCAACACATACTACCTCATATTTGATTTTTCTTGATTGCTTTTCA +>MN258252 +CCTTGAGAAGCTACTGCTGCGAAAGCTGGAATGAGCACCCTCCAAGAACTACAAGAAAAC +ATCACAGCACACGAACAACAGCTCGTGACTGCTCGGCAAAAGCTTAAAGATGCCGAGAAG +GCGGTGGAGGTGGACCCGGATGACGTTAACAAGAGCACATTACAAAGTAGACGGGCAGCT +GTGTCTACATTGGAGACCAAACTCGGGGAACTCAAGAGGCAACTTGCGGATCTGGTGGCA +GCTCAAAAGTTGGCTACAAAACCAGTTGATCCAACAGGGCTTGAGCCTGATGACCATCTG +AAAGAGAAATCATCTCTGAGATATGGGAATGTCCTGGATGTTAACTCAATCGACTTGGAA +GAACCGAGTGGACAGACTGCTGATTGGAAGGCTATAGGAGCATATATCTTAGGGTTTGCA +ATTCCGATCATACTAAAAGCCCTATATATGCTGTCAACCCGCGGGAGACAAACTGTGAAA +GACAATAAAGGAACTAGGATAAGGTTTAAGGATGATTCTTCCTTTGAAGAAGTCAATGGG +ATACGTAAACCAAAACACCTTTATGTCTCAATGCCGACTGCACAGTCTACTATGAAGGCT +GAAGAAATCACGCCAGGACGTTTTAGGACAATTGCTTGTGGCCTCTTCCCAGCACAGGTC +AAAGCTCGAAACATAATAAGCCCTGTAATGGGAGTGATTGGATTTGGCTTCTTTGTGAAG +GACTGGATGGATCGGATAGAGGAATTCCTGGCTGCAGAGTGTCCATTCTTGCCTAAGCCA +AAGGTTGCCTCAGAAGCCTTCATGTCTACCAACAAGATGTATTTCCTGAACAGACAGAGA +CAAGTCAATGAATCTAAGGTTCAAGACATTATTGATTTGATAGATCATGCTGAAACTGAG +TCTGCTACCTTGTTTACGGAAATTGCAACACCCCATTCAGTCTGGGTGTTTGCATGTGCG +CCTGACCGGTGCCCTCCAACTGCATTGTATGTCGCAGGGGTACCAGAACTTGGTGCATTC +TTTTCCATTCTTCAGGACATGCGTAATACCATCATGGCATCTAAATCTGTAGGGACTGCA +GAAGAGAAGCTAAAGAAGAAATCTGCCTTCTATCAATCTTACCTGAGAAGAACACAATCT +ATGGGGATTCAACTGGACCAAAAGATCATAATCCTCTACATGCTTTCATGGGGTAAAGAA +GCTGTGAATCATTTCCATCTTGGTGATGATATGGACCCTGAACTAAGGCAGCTAGCACAA +TCCCTGATCGACACCAAGGTGAAGGAGATCTCCAACCAAGAGCCACTAAAGTTGTAAATA +CTTAATGAAAGTATGATGGAAGAGAGACTTTCCGGGCTTGTGCCACATATTAATCATCTC +AGGATCTATCCTTAATGTGATTAATAGGGTCTTATTATAAGGGCGGTTAAGGGGTCAGAT +ACTAACTACGGGTAAGGGTTCATTACTATCCTTTTGCACTAGGGTTAAAGGGCCACTACA +TTGTATTTGCACTACGGGAAATGGGAGGTGGGTTAGTCTATATTGTAGTTGTTAAGTTTT +TGTACTCATAGGTTTATAAGGAATCAGCTATATGAGATCACTGATTGATTGGCTATTTTT +TTTAGGTTAAGTGATTACATTTAAATAGTTGTGTTAAGTTTAGTGTGTTAAGGCCTATAG +GTTAAGATCTACTAACAATTATATTATGTCATTGGATGTAAATTTCGTTCCTGGCTTGCT +TCTGCTTTCGCATTGCTAACCTACAACATAACTACCTCATCCACACACCCTCCCCTATTC +TACCTCAACACATACTACCTCATATTTGATTTTTCTTGATTGCTTTTCA +>MN850086 +GTAGACTCCTTGAGAAGCTACTGCTGCGAAAGCTGGAATGAGCACCCTCCAAGAATTACA +AGAAAATATCACAGCACACGAACAACAGCTCGTGACTGCTCGGCAAAAGCTTAAAGATGC 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@@ +{"version": "v2", "meta": {"title": "Andes Virus S Segment (ANDV)", "updated": "2026-05-12", "build_url": "https://github.com/nextstrain/andv", "data_provenance": [{"name": "Pathoplexus", "url": "https://pathoplexus.org/"}], "maintainers": [{"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}], "display_defaults": {"map_triplicate": false, "color_by": "outbreak", "distance_measure": "div"}, "genome_annotations": {"N": {"end": 1329, "seqid": "defaults/s/reference.gb", "start": 43, "strand": "+", "type": "CDS"}, "NSs": {"end": 313, "seqid": "defaults/s/reference.gb", "start": 122, "strand": "+", "type": "CDS"}, "nuc": {"end": 1871, "start": 1, "strand": "+", "type": "source"}}, "colorings": [{"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "date", "title": "Collection Date", "type": "categorical"}, {"key": "region", "title": "Region", "type": "categorical", "scale": [["Africa", "#CEB541"], ["Europe", "#E39B39"], ["South America", "#E56C2F"]]}, {"key": "country", "title": "Country", "type": "categorical"}, {"key": "division", "title": "Admin Division", "type": "categorical"}, {"key": "host", "title": "Host", "type": "categorical"}, {"key": "abbr_authors", "title": "Authors", "type": "categorical"}, {"key": "dataUseTerms", "title": "Data use terms", "type": "categorical"}, {"key": "restrictedUntil", "title": "Restricted Until", "type": "categorical"}, {"key": "date_released", "title": "Release Date", "type": "categorical"}, {"key": "length", "title": "Length", "type": "continuous"}, {"key": "INSDC_accession", "title": "INSDC Accession", "type": "categorical"}, {"key": "PPX_accession", "title": "Pathoplexus Accession", "type": "categorical"}, {"key": "institution", "title": "Author Affiliations", "type": "categorical"}, {"key": "totalAmbiguousNucs", "title": "Ambiguous Nucleotides", "type": "continuous"}, {"key": "outbreak", "title": "outbreak", "type": "categorical"}], "filters": ["country", "division", "host", "abbr_authors", 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P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1827}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZG6.1", "url": "https://pathoplexus.org/seq/PP_006VZG6.1"}, "INSDC_accession": {"value": "MN258237.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258237.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}, {"name": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX", "node_attrs": {"div": 0.169235, "strain": {"value": "PP_006VZ9L|Epuyen/18-19_Patient_11_12/15/18|Argentina/XXXX-XX-XX"}, "accession": "PP_006VZ9L", "author": {"author": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.", "value": "Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C."}, "restrictedUntil": {"value": "XXXX-XX-XX"}, "date": {"value": "XXXX-XX-XX"}, "abbr_authors": {"value": "Martinez et al."}, "outbreak": {"value": "unassigned"}, "date_released": {"value": "2020-09-30"}, "country": {"value": "Argentina"}, "region": {"value": "South America"}, "length": {"value": 1844}, "dataUseTerms": {"value": "OPEN", "url": "https://pathoplexus.org/about/terms-of-use/open-data"}, "institution": {"value": "United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences"}, "totalAmbiguousNucs": {"value": 0}, "PPX_accession": {"value": "PP_006VZ9L.1", "url": "https://pathoplexus.org/seq/PP_006VZ9L.1"}, "INSDC_accession": {"value": "MN258230.1", "url": "https://www.ncbi.nlm.nih.gov/nuccore/MN258230.1"}, "host": {"value": "human"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, "root_sequence": {"N": "MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQSRRAAVSTLETKLGELKRQLADLVAAQKLATKPVDPTGLEPDDHLKEKSSLRYGNVLDVNSIDLEEPSGQTADWKAIGAYILGFAIPIILKALYMLSTRGRQTVKDNKGTRIRFKDDSSFEEVNGIRKPKHLYVSMPTAQSTMKAEEITPGRFRTIACGLFPAQVKARNIISPVMGVIGFGFFVKDWMDRIEEFLAAECPFLPKPKVASEAFMSTNKMYFLNRQRQVNESKVQDIIDLIDHAETESATLFTEIATPHSVWVFACAPDRCPPTALYVAGVPELGAFFSILQDMRNTIMASKSVGTAEEKLKKKSAFYQSYLRRTQSMGIQLDQKIIILYMLSWGKEAVNHFHLGDDMDPELRQLAQSLIDTKVKEISNQEPLKL*", "NSs": "MPRRQWRWTRMTLTRAHYKVDGQLCLHWRPNSENLRGNLQIWWQLKNWLQNQLIQQGLSLMII*", "nuc": "TAGTAGTAGACTCCTTGAGAAGCTACTGCTGCGAAAGCTGGAATGAGCACCCTCCAAGAATTGCAGGAAAACATCACAGCACACGAACAACAGCTCGTGACTGCTCGGCAAAAGCTTAAGGATGCCGAGAAGGCAGTGGAGGTGGACCCGGATGACGTTAACAAGAGCACACTACAAAGTAGACGGGCAGCTGTGTCTACATTGGAGACCAAACTCGGAGAACTTAAGAGGCAACTTGCAGATTTGGTGGCAGCTCAAAAATTGGCTACAAAACCAGTTGATCCAACAGGGCTTGAGCCTGATGATCATCTAAAGGAAAAATCATCTCTGAGATATGGGAATGTCCTGGATGTTAATTCAATTGATTTGGAAGAACCGAGTGGACAGACTGCTGATTGGAAGGCTATAGGAGCATACATCTTAGGGTTTGCAATTCCGATCATCCTAAAGGCCTTATACATGCTGTCAACCCGTGGGAGACAAACTGTGAAAGACAACAAAGGGACCAGGATAAGGTTTAAGGATGATTCTTCCTTTGAAGAAGTCAATGGGATACGTAAACCAAAACACCTTTACGTCTCAATGCCAACTGCACAGTCCACTATGAAGGCTGAAGAAATCACGCCAGGACGATTTAGGACAATTGCTTGTGGCCTTTTTCCAGCACAGGTCAAAGCCCGAAATATAATAAGTCCTGTAATGGGAGTAATTGGATTTGGCTTCTTTGTAAAGGATTGGATGGATCGGATAGAAGAGTTTCTGGCTGCAGAGTGTCCATTCTTACCTAAGCCAAAGGTCGCCTCAGAAGCCTTCATGTCTACCAATAAGATGTATTTTCTGAACAGACAGAGACAAGTCAATGAATCTAAGGTTCAAGATATTATCGATTTGATAGACCATGCTGAGACCGAGTCTGCTACCTTGTTTACAGAGATTGCAACACCCCATTCAGTCTGGGTGTTTGCATGTGCACCTGACCGGTGCCCTCCAACTGCATTGTATGTTGCAGGGGTACCGGAACTTGGTGCATTTTTTTCTATCCTTCAGGACATGCGTAATACCATCATGGCATCTAAATCTGTAGGGACTGCAGAAGAGAAGCTAAAGAAAAAATCTGCCTTCTACCAATCATACCTAAGAAGGACACAATCTATGGGAATCCAACTGGACCAGAAGATCATAATCCTTTACATGCTATCATGGGGTAAAGAAGCTGTGAATCACTTCCATCTTGGTGATGATATGGACCCTGAACTCAGGCAGCTAGCACAATCTCTGATCGATACTAAGGTGAAGGAGATCTCCAACCAAGAGCCACTTAAGTTGTAGGTGCTTAATGAAATCATGATTGAAGAAAGACTTTCCGGGCTTGTGCCACATATTAATCATCTCAGGACCTATCCTTAATGTGATTAATAGGGTTTTATTATAAGGGCAGTTAATGGGGTTGGTTACTAACTATGGGTAAGGGTTCATTACCATTTTTGCACTAGGGTTAAAGGGCCACTACATTGTATTTGCACTAAGGGAAATGGGAGGTGGGTTAGTTTGTATTTAGTTGTTAAGTTTTTTATAATCATATGTTAATGAGGAATTAGCTATATGATATCACTGATTGATTGGCTATTTTTAGGTTAAGTAATTGTAGTTAAATAGTTGTGTTAAGTTAGTATGTTAAGGTTTATAGGTTAAGATTTACTAACAATCATATTATGTCATTAGATGTAAATTTCATTCCTGGCTTGCTTCTGCTTTCGCATTGCTAACCTACAACAAGACTACCTCACCCACTACCCCTCCCCTATTCTACCTCAACACATACTACCTCACATTTGATTTTTCTTGATTGCTTTTCAAGGAGCATACTACTA"}} \ No newline at end of file From bd15790bdd474e2b424c376533df934953f35c4e Mon Sep 17 00:00:00 2001 From: Richard Neher Date: Tue, 12 May 2026 17:46:13 +0200 Subject: [PATCH 3/7] apply fixes --- .../itps/orov/L/refseq/pathogen.json | 16 +----- data/community/itps/orov/L/refseq/tree.json | 20 ++++++-- data/community/itps/orov/L/tefe/pathogen.json | 16 +----- data/community/itps/orov/L/tefe/tree.json | 20 ++++++-- .../itps/orov/M/refseq/pathogen.json | 16 +----- data/community/itps/orov/M/refseq/tree.json | 20 ++++++-- data/community/itps/orov/M/tefe/pathogen.json | 16 +----- data/community/itps/orov/M/tefe/tree.json | 20 ++++++-- .../itps/orov/S/refseq/pathogen.json | 16 +----- data/community/itps/orov/S/refseq/tree.json | 20 ++++++-- data/community/itps/orov/S/tefe/pathogen.json | 16 +----- data/community/itps/orov/S/tefe/tree.json | 20 ++++++-- .../flu/h1n1pdm/ha/MW626062/tmp.tsv | 49 +++++++++++++++++++ .../orthohantavirus/andv/l/pathogen.json | 6 +-- .../orthohantavirus/andv/m/pathogen.json | 6 +-- .../orthohantavirus/andv/s/pathogen.json | 6 +-- 16 files changed, 172 insertions(+), 111 deletions(-) create mode 100644 data/nextstrain/flu/h1n1pdm/ha/MW626062/tmp.tsv diff --git a/data/community/itps/orov/L/refseq/pathogen.json b/data/community/itps/orov/L/refseq/pathogen.json index a89eff4f9..7684c446d 100644 --- a/data/community/itps/orov/L/refseq/pathogen.json +++ b/data/community/itps/orov/L/refseq/pathogen.json @@ -7,25 +7,13 @@ "attributes": { "name": "orov/L/refseq", "reference accession": "NC_005776.1", - "reference name": "Oropouche virus, L segment" + "reference name": "Oropouche virus, L segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 43 - }, - { - "begin": 6796, - "end": 6846 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data/community/itps/orov/L/refseq/tree.json b/data/community/itps/orov/L/refseq/tree.json index 8052bdbde..ad107fe9f 100644 --- a/data/community/itps/orov/L/refseq/tree.json +++ b/data/community/itps/orov/L/refseq/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -85,7 +85,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 43 + }, + { + "begin": 6796, + "end": 6846 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -10338,4 +10352,4 @@ "L": "MSQLLLNQYRNRILHCREPEIAKDIWRDLLNDRHNYFSREFCRAANLEYRNDVPAEDICAEVLDGYKARKVRFCTPDNYLLHDGKMYIIDFKVSVDDRSSRITREKYNEIFGEVFNPEGVDFEIVIIRLDPSNMTIHVDSRDFVNTIGPITLNISMQWFFDMKDFLFGKFRDDDKFHAIISQGEFTMTLPWIEEDTPELLTHPIYNEFMSSMPEAEQALFKEALEFKSFGAEKWNIFLKGVMSKYGEYYKEFTKGHAHSIFLTTGDYPKPDKDQISAGWREMVNRVSSERDMSNDINQEKPSMHFIWAKNDSNSNNNIQKLIKLSKSLQAMSGTGSYVNAFKSLGRLMDISSDVKKYESFCGKLKSLARSSIKKLDRKIEPIQIGTATVLWEQQFKLDTDVIKREDRIHLMKDYLGIGKHKSFSKKLNNDINTDKPKILNFNNDDIVRKCKDKYNQVIHNLSQINELDKIGNYLEHFSAKISACSVEMWDFIYNTTKTKYWQCINDYSTLMKNMLAVSQYNRHNTFRIVSCANNNVFGLVMPSSDIKTKKATLVYAIMALHNEEAEIAELGSLYSTFKTATGYISISKAFRLDKERCQRIVSSPGLFLMTSCLLFNGNKSLEFDKLLGFSFFTSISITKAMLSLTEPSRYMIMNSLAVSSHVREYISEKFSPYTKTSFSVVMTDLIKKGCYSAYEQRKKVQIRDIKLTDYDITQKGVDSKRDLKSIWFPGKVNLKEYLNQIYLPFYFNSKGLHEKHHVLIDLAKTVLEIEKEQRESLPEPWSEIPAKRLSLNVLIYSLQELNLDTSRHNFVRSRVENANNFNRSITTISTFTSSKSCIKIGDFEEEKREKLRMIQKKLAKDISKLTIANPAFLDEITNEHEIRHSTYEDLKQSIPDYTDYMSVKVFDRLYEKITTNEINDKETVKLILETMKKHKIFHFGFFNKGQKTAKDREIFLGEFEAKMCLYLVERIAKERCKLNPEEMISEPGDSKLRVLEKQSEDEIRYISNTIKTLGNAIENLQSGSLNWADICENKARGLKIEINADMSKWSAQDVLFKYFWLIVLDPILYPAERKRIIYFLCNYMQKRLIMPDELLTTILDQRVPYSNDIIGLMTNNYRSNTVEIKRNWLQGNLNYTSSYLHSCSMSVYKDIIREAAILLEGEALVNSMVHSDDNQTSICMVQNKLPDDNIIEFCIKIFEKICLTFGNQANMKKTYLTNFIKEFVSLFNIHGEPFSIYGRFLLTAVGDCAYLGPYEDLASRLSATQTAIKHGCPPSLAWVSIALNHWITHTTYNMLPGQNNDPLPFFPTNNRSEIPVEMCGILESDLSTIALTGLEAGNVTFLTNIARKLSSPILQRESIQDQYNSIEKWDLSKLSQIDILRLKMLRYISLDSSVTSDDGMGETSEMRSRSLLTPRKFTTSGSLNRLKSYKDFQDIIADEDKTNELFENFIRHPELLVTKGETFEEFVNTILFRYNSKKFKESLSIQNPAQLFIEQILFSNKPVIDYTSIHDKIFGLQDMPGIEELDTIIGRKTFVESYVQIVDDLSNLTLDINDVKTIFAFCLMNDPLLITSANNIIMSVKGHSQERIGQSACKMPEVRSLKLIHYSPAVVLRAYVRGPTNVPNVDIDELARDLSHLEDFIQSTKLRENMRERIEINEKRHLGRDFKFEIKELTRFYQVCYDYIKSTEHKVKVFILPYKVFTSIEFCGALTGNLINDKLWYITHYLKNIVSTTHKAQISSSPELELQIADEALRLVAHFADTFLASESRIQFLKKIIEEFTYKGIPVKHLYSKIKNSKLRVKFLGILLWLDDLTQNDLDKFDADKSDEKIIWNNWQVSRDMNTGPIDLMISGYSRQLRITGEDDKLIAAELQVTRLSEDLIYRHGQAMLNKPHGLKLEKMQPVTEMSKRLHYIVFQQRSRKRYFYSILPTQVIEDHNSRVESSRLSRDSKWVPVCPVAISKLYQQGRPILSKVRNLNMQTHSLSRIQVNVDEYAITRRAHFQKMPFFEGPSIPSGGMDLSELMKSTSLLSLNYDNIKNASLLDMSRVFKCNGSGDDQMAFEFLSDEILEQDVVEEIECNPIFSISYTKRGESNMTYKNAFHKALISECDKFEEAFDFLDMGFCSNENLSILEEIHWIISYLKTNQWSTELDNCIHMCMYRNGYDAEYHKFDIPSKFLKDPINRTINWTEVIEFILLIEDFQTKIEPWSSMKSHFCSKAHSVALECMKNEKRSLAEFVDKSKKTGKSKFDF*", "nuc": "AGTAGTGTGCTCCTATTCCGAAACAAACAAAAACAATCTCAAAATGTCACAACTGTTGCTCAACCAATATCGGAATAGGATATTGCACTGCCGTGAACCTGAGATAGCAAAGGATATATGGCGAGATCTATTAAATGATCGACACAATTACTTTTCTCGGGAATTTTGCAGAGCTGCAAATCTTGAGTACAGAAATGATGTTCCTGCTGAGGATATTTGTGCTGAAGTTCTTGATGGTTATAAAGCAAGGAAAGTTCGCTTTTGTACACCTGATAATTACTTACTACATGATGGAAAGATGTATATAATAGACTTCAAAGTGTCTGTAGACGACCGATCTTCTAGAATCACAAGGGAGAAATATAATGAGATTTTTGGAGAGGTATTCAATCCAGAAGGTGTAGATTTTGAAATTGTTATTATTAGATTAGATCCTTCAAATATGACGATACATGTGGACTCTCGAGATTTCGTGAATACAATTGGGCCGATTACATTAAACATTAGTATGCAATGGTTTTTTGATATGAAAGACTTCTTGTTCGGGAAATTTCGGGATGATGATAAATTCCATGCTATAATAAGTCAAGGAGAATTCACAATGACATTGCCATGGATTGAAGAAGACACCCCAGAATTGCTTACTCATCCTATATACAATGAATTCATGAGTTCAATGCCAGAGGCAGAACAGGCCCTATTCAAGGAAGCATTGGAATTCAAATCATTTGGGGCAGAAAAATGGAATATCTTTTTGAAGGGGGTGATGTCAAAGTATGGTGAATATTATAAAGAATTTACTAAAGGACATGCTCATTCTATATTTCTGACAACAGGGGACTACCCCAAGCCAGACAAAGACCAAATTTCAGCAGGTTGGAGAGAAATGGTAAACAGAGTAAGCTCTGAACGTGACATGTCAAATGACATAAATCAGGAAAAACCAAGCATGCATTTTATATGGGCAAAGAATGATTCAAATAGCAACAATAATATACAAAAGCTAATCAAACTATCTAAATCACTGCAAGCTATGAGCGGGACAGGGAGCTATGTAAATGCTTTCAAGTCATTAGGGAGATTAATGGATATATCATCAGATGTTAAAAAATATGAATCATTTTGTGGGAAATTGAAATCTCTGGCAAGGTCTAGTATAAAAAAACTTGACAGGAAAATAGAGCCAATACAAATTGGGACTGCAACTGTCTTATGGGAACAGCAATTTAAACTAGATACAGATGTTATAAAAAGAGAAGACAGAATACATTTAATGAAAGATTATCTTGGGATCGGTAAGCACAAATCATTTTCAAAGAAATTAAACAACGACATAAATACTGATAAGCCTAAAATATTAAATTTCAACAATGATGATATAGTCAGGAAATGCAAAGATAAATATAATCAAGTCATACATAACCTATCCCAAATCAATGAATTAGATAAGATTGGAAACTACCTAGAGCACTTTTCAGCTAAAATTAGTGCCTGCAGTGTAGAAATGTGGGATTTTATATATAATACAACCAAAACTAAATACTGGCAATGCATCAATGACTATTCCACCCTAATGAAAAACATGTTAGCTGTCTCTCAATATAATAGACACAATACGTTTAGAATTGTCTCATGTGCAAACAATAATGTATTTGGTCTAGTAATGCCAAGCTCAGATATAAAGACAAAAAAAGCAACTTTAGTCTATGCAATAATGGCTCTCCATAATGAGGAGGCAGAAATAGCAGAACTTGGCTCACTCTACTCAACTTTTAAGACAGCAACAGGATATATTTCAATATCAAAGGCTTTTAGGCTGGATAAAGAAAGATGCCAACGCATAGTATCCTCTCCAGGCTTGTTCCTCATGACAAGCTGCCTATTATTCAACGGTAACAAGAGTTTAGAATTTGATAAATTACTAGGATTTTCATTTTTTACGTCAATATCAATTACGAAAGCTATGCTCTCCCTTACTGAGCCTTCACGTTATATGATCATGAACTCGTTAGCAGTTTCCAGCCATGTAAGAGAGTATATATCTGAAAAATTCTCCCCTTATACAAAAACATCATTTTCTGTGGTAATGACAGACTTAATCAAGAAGGGTTGCTATTCAGCATATGAACAGAGAAAAAAAGTACAAATAAGAGACATAAAATTAACAGATTATGATATAACACAAAAGGGAGTGGATTCCAAAAGAGATCTTAAATCTATTTGGTTCCCAGGAAAGGTAAACCTGAAAGAATATTTAAACCAAATTTATCTACCATTTTATTTTAACTCTAAAGGATTACATGAAAAACATCATGTCTTGATAGATTTGGCTAAAACAGTACTAGAAATCGAAAAAGAGCAAAGGGAGTCATTACCTGAGCCATGGTCAGAGATACCTGCTAAGCGACTGTCACTTAATGTTTTAATTTACTCATTGCAGGAACTGAATTTAGATACTTCAAGACATAATTTTGTAAGAAGCCGGGTGGAAAACGCAAATAATTTCAACAGATCTATAACGACAATATCTACTTTTACCAGCTCAAAATCATGCATTAAGATTGGTGATTTTGAAGAAGAAAAAAGAGAAAAACTAAGAATGATACAAAAGAAACTTGCAAAGGATATTTCTAAATTAACCATAGCCAACCCAGCATTCTTAGATGAGATCACAAACGAACATGAGATAAGGCATTCAACTTATGAGGACTTAAAACAATCTATCCCAGATTACACAGATTATATGTCTGTGAAAGTTTTTGACAGATTGTACGAGAAGATTACTACCAATGAAATAAATGATAAGGAAACAGTCAAGCTGATTCTAGAGACCATGAAAAAACATAAAATATTTCATTTTGGATTCTTCAATAAAGGACAAAAAACAGCCAAAGATAGAGAAATATTTTTAGGTGAATTTGAAGCAAAAATGTGTCTGTACCTTGTCGAAAGAATAGCTAAAGAGAGGTGCAAATTAAACCCTGAAGAAATGATAAGTGAACCAGGCGACTCGAAACTAAGGGTATTAGAGAAGCAATCAGAAGACGAAATCAGGTATATTAGCAATACAATAAAGACATTAGGGAATGCCATAGAGAACTTGCAATCTGGATCTTTAAATTGGGCAGATATATGCGAAAACAAAGCAAGAGGACTTAAGATAGAAATAAATGCTGATATGTCCAAATGGAGTGCCCAAGATGTACTTTTTAAATATTTTTGGTTGATAGTGCTTGATCCCATCTTATATCCTGCTGAGAGGAAAAGGATAATTTATTTCCTCTGTAATTATATGCAGAAAAGGCTTATAATGCCCGATGAATTGCTCACTACTATATTGGATCAAAGAGTTCCTTATTCAAATGACATAATTGGATTAATGACAAACAATTATAGGTCTAATACAGTAGAAATAAAGCGTAACTGGCTTCAAGGCAACTTAAATTATACAAGCAGTTACTTACACAGCTGTAGTATGTCTGTGTACAAAGATATAATAAGAGAAGCAGCAATATTATTAGAAGGAGAAGCCCTTGTGAACTCAATGGTACATTCTGATGATAATCAAACATCTATATGTATGGTGCAGAATAAATTACCAGATGACAATATAATTGAATTTTGCATTAAGATATTCGAGAAGATATGCTTAACTTTTGGCAATCAGGCAAATATGAAGAAGACATATCTAACTAACTTCATCAAAGAGTTTGTTTCTTTATTTAATATACATGGAGAACCATTTTCTATATATGGGAGATTTCTACTCACAGCAGTAGGAGACTGTGCCTATCTAGGGCCTTATGAAGATTTAGCAAGTAGGCTATCTGCAACACAAACTGCTATAAAGCATGGTTGCCCACCATCACTTGCATGGGTATCTATCGCTCTAAATCACTGGATAACCCACACTACATATAATATGTTGCCTGGCCAAAATAATGACCCGTTACCATTCTTCCCTACTAACAATAGAAGTGAAATACCAGTAGAGATGTGCGGAATACTAGAAAGTGATTTATCAACAATTGCACTAACTGGTTTAGAAGCAGGGAATGTCACGTTTCTAACAAATATAGCAAGGAAGTTATCATCCCCAATCTTACAAAGAGAAAGTATTCAAGATCAATACAATTCTATAGAAAAGTGGGATCTGAGCAAATTATCACAGATCGACATTCTAAGGCTTAAAATGCTCAGGTATATATCTCTTGATAGTTCAGTCACATCTGATGATGGTATGGGGGAGACTAGTGAAATGAGATCTCGATCACTTTTAACACCTCGTAAATTCACAACAAGTGGGTCACTTAATAGGTTGAAATCATATAAAGACTTTCAAGATATAATAGCAGATGAGGACAAGACAAACGAACTATTTGAGAATTTCATTAGACACCCAGAGTTACTGGTTACAAAAGGCGAAACATTTGAAGAATTTGTTAATACGATATTATTTAGGTACAATTCAAAGAAATTCAAAGAATCTTTGTCAATACAAAACCCAGCACAGCTTTTTATTGAGCAAATATTATTTTCCAATAAACCAGTAATTGACTACACTAGCATACATGACAAGATTTTTGGATTACAAGACATGCCAGGAATTGAAGAACTAGATACAATTATAGGTCGCAAAACATTTGTTGAGAGTTATGTTCAAATCGTAGATGACTTAAGCAATTTAACATTGGATATAAACGATGTCAAGACTATATTTGCCTTTTGTCTTATGAATGACCCACTACTGATCACATCTGCTAACAATATAATAATGTCTGTTAAGGGACATAGTCAAGAAAGAATAGGTCAATCAGCATGCAAAATGCCAGAGGTCCGAAGTCTAAAACTCATACATTATTCACCAGCAGTTGTTTTGAGAGCCTATGTGAGAGGGCCAACAAATGTACCGAATGTAGATATAGATGAACTTGCAAGGGATCTATCTCATTTAGAAGACTTCATACAAAGTACAAAACTCAGAGAAAATATGAGAGAGAGAATAGAAATAAATGAGAAGCGGCACTTAGGAAGGGATTTCAAATTTGAAATCAAAGAACTAACTAGATTTTACCAAGTGTGTTATGATTACATAAAGTCTACAGAACATAAAGTCAAGGTATTCATATTGCCATACAAAGTTTTCACATCAATAGAATTCTGCGGGGCACTGACAGGTAACTTGATAAATGACAAATTATGGTACATAACGCATTATCTGAAAAATATAGTGTCTACTACACATAAGGCACAAATTTCTTCTTCACCTGAATTGGAATTGCAAATTGCTGATGAGGCACTAAGACTAGTAGCACATTTTGCTGATACTTTCTTGGCATCAGAATCAAGAATACAATTTCTGAAGAAAATTATTGAAGAATTCACATACAAAGGGATACCTGTAAAACATTTATACTCAAAAATAAAGAACTCCAAGTTGAGGGTTAAATTTCTAGGGATTCTTTTATGGTTAGATGATCTAACACAGAATGATCTGGATAAATTTGATGCAGATAAATCAGATGAAAAGATTATATGGAATAACTGGCAAGTGTCAAGAGATATGAATACTGGACCAATAGACTTAATGATAAGCGGTTACTCTAGACAGCTGCGGATCACTGGGGAAGATGACAAATTGATTGCTGCTGAATTGCAGGTTACTAGATTGTCAGAAGATTTAATTTATAGACACGGTCAGGCAATGTTGAATAAGCCACACGGCTTAAAGCTTGAAAAAATGCAACCTGTGACTGAGATGTCTAAACGATTACATTATATCGTTTTCCAGCAAAGATCACGGAAACGATACTTCTATTCTATATTACCCACCCAAGTAATTGAGGACCATAATTCTAGAGTTGAATCATCTAGGCTAAGCAGAGATTCAAAATGGGTTCCTGTATGCCCTGTTGCAATATCAAAACTCTACCAACAAGGACGGCCTATACTTTCCAAAGTTAGAAATCTGAATATGCAGACTCATTCGCTTTCCAGAATACAAGTTAATGTAGATGAATATGCCATCACGAGAAGAGCACATTTTCAGAAAATGCCTTTCTTCGAAGGACCATCAATCCCTTCTGGTGGTATGGATTTGTCTGAGTTGATGAAATCTACATCCCTATTAAGCTTGAATTATGATAACATAAAAAATGCATCCTTATTGGACATGTCTAGGGTATTTAAGTGCAATGGCAGTGGAGATGACCAAATGGCTTTCGAATTTCTATCGGACGAAATTTTGGAGCAAGATGTAGTTGAAGAAATAGAATGCAACCCTATATTTTCTATTAGTTATACAAAAAGAGGAGAATCCAATATGACTTATAAAAATGCTTTCCACAAAGCCTTAATCTCAGAATGTGACAAATTTGAAGAAGCATTTGACTTCCTCGACATGGGATTTTGCTCGAATGAAAATCTTAGTATTCTGGAGGAAATACATTGGATAATCAGTTATTTAAAAACAAATCAATGGTCTACGGAACTAGACAATTGTATTCACATGTGCATGTACAGGAATGGATATGATGCAGAATATCATAAATTTGATATACCCTCTAAATTCCTCAAAGACCCAATAAACCGAACAATAAATTGGACTGAAGTCATTGAATTTATATTATTAATTGAAGATTTCCAAACAAAAATTGAGCCATGGTCTAGTATGAAGTCACACTTCTGTTCAAAAGCACACAGTGTAGCACTAGAGTGTATGAAAAATGAGAAAAGATCATTGGCAGAATTTGTAGACAAAAGTAAGAAAACTGGCAAATCCAAATTTGACTTCTAAGGTATACACATGTAAAAGTAGTGTTTGTTTCTAAATAGGAGCACACTACT" } -} \ No newline at end of file +} diff --git a/data/community/itps/orov/L/tefe/pathogen.json b/data/community/itps/orov/L/tefe/pathogen.json index 203636f25..1115bf333 100644 --- a/data/community/itps/orov/L/tefe/pathogen.json +++ b/data/community/itps/orov/L/tefe/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/L/tefe", "reference accession": "PP154172.1", - "reference name": "Oropouche virus ILMD_TF29 (tefe), L segment" + "reference name": "Oropouche virus ILMD_TF29 (tefe), L segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 35 - }, - { - "begin": 6794, - "end": 6814 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data/community/itps/orov/L/tefe/tree.json b/data/community/itps/orov/L/tefe/tree.json index cd5a4f5e4..855753c83 100644 --- a/data/community/itps/orov/L/tefe/tree.json +++ b/data/community/itps/orov/L/tefe/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -81,7 +81,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 35 + }, + { + "begin": 6794, + "end": 6814 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -9958,4 +9972,4 @@ "L": "MSQLLLNQYRNRILHCREPEIAKDIWRDLLNDRHNYFSREFCRAANLEYRNDVPAEDICAEVLDGYKARKVRFCTPDNYLLHDGKMYIIDFKVSVDDRSSRITREKYNEIFGEVFNPEGVDFEIVIIRLDPSNMAIHVDSRDFMNTIGPITLNISMQWFFDMKDFLFGKFRDDDKFHAIISQGEFTMTLPWTEEDTPELLTHPIYNEFMNSMPESEQALFKEALEFKSFGAEKWNIFLKGVMSKYGEYYKEFTKGHAQSIFLATGDYPKPDKDQISAGWREMVSRVSSERDMSNDINQEKPSIHFIWAQNDSSSNNNIQKLIKLSKSLQAMSGTGSYVSAFKSLGRLMDISSDIKKYESFCGKLKSLARSSVKKLDRKIEPVQIGTATVLWEQQFKLDTDVIKREDRIHLMKDYFGIGKHKSFSKKLNNDINTDKPKILNFDNDDIVRKCKDKYNQVTHNLSQVNELDKIGNYLEHFSAKISACSVEMWDFIYNTTKTKYWQCINDYSTLMKNMLAVSQYNRHNTFRIVSCANNNVFGLVMPSSDIKTKKATLVYAIIALHNEETEIAELGSLYSTFKTTTGYISISKAFRLDKERCQRIVSSPGLFLMTSCLLFNGNKSLEFDKLLGFSFFTSISITKAMLSLTEPSRYMIMNSLAVSSHVKEYISEKFSPYTKTAFSVVMTDLIKKGCYSAYEQRKKVQIRDIKLTDYDITQKGVDSKRDLKSIWFPGKVNLKEYLNQIYLPFYFNSKGLHEKHHVLIDLAKTVLEIEKEQRESLPEPWSEIPAKQTVNLNILIYSIARNLNLDTSRHNFVRSRVENANNFNRSITTISTFTSSKSCIKIGDFEEEKKKKTKNDAKKLAKDISKLTIANPAFLDEITNEHEIRHSTYEDLKQSIPDYTDYMSVKVFDRLYEKITTNEISDKETVKLILETMKKHKIFYFGFFNKGQKTAKDREIFLGEFEAKMCLYLVERIAKERCKLNPEEMISEPGDSKLRVLEKQSEDEIRYISNTIKTLGNAIENLQSGSLNWADICESKARGLKIEINADMSKWSAQDVLFKYFWLIVLDPILYPAERKRIIYFLCNYMQKRLIMPDELLTTILDQRVPYSNDIIGLMTNNYRSNTVEIKRNWLQGNLNYTSSYLHSCSMSVYKDIIREAATLLEGEALVNSMVHSDDNQTSICMVQNKLPDDNVIEFCIKIFEKICLTFGNQANMKKTYLTNFIKEFVSLFNIHGEPFSIYGRFLLTAVGDCAYLGPYEDLASRLSATQTAIKHGCPPSLAWVSIALNHWITHTTYNMLPGQNNDPLPFFPTNNRNEIPVEMCGILESDLSTIALTGLEAGNVTFLTNIARKLSSPILQRESIQDQYNSIEKWDLSRLSQIDILRLKMLRYISLDSSVTSDDGMGETSEMRSRSLLTPRKFTTSGSLNRLKSYKDFQNIITDEDKTNELFENFIRHPELLVTKGETFEEFVNTILFRYNSKKFKESLSIQNPAQLFIEQILFSNKPIIDYTSIHDKIFGLQDMPGIEELDTIIGRKTFVESYVQIVDDLSNLTLDINDVKTIFAFCLMNDPLLITSANNIIMSVKGHSQERIGQSACKMPEVRSLKLIHYSPAVVLRAYVRGPTNVPNADIDELARDLSHLEDFIQSTKLRENMRERIEINEKRHLGRDFKFEIKELTRFYQVCYDYIKSTEHKIKVFILPYKVFTSIEFCGALTGNLINDKLWYITHYLKNIVSTTHKAQISSSPELELQIADEALRLIAHFADTFLAPESRIQFLKKVIEEFTYKGIPVKHLYSKIKNSKLRVKFLGILLWLDDLTQNDLDKFDADKSDEKIIWNNWQVSRDMNTGPIDLMISGYSRQLRITGEDDKLIAAELQVTRLSEDLIYRHGQAMLNKPHGLKLEKMQPVTEMSKQLHYIVFQQRSRKRYFYSILPTQIIEDHNSRIESSRLNRDSKWVPVCPVAVSKLYQQGRPILSKVKNLNMQTHSLSRIQVNVDEYAITRRAHFQKMPFFEGPSIPSGGMDLSELMKSTSLLSLNYDNIKNASLLDMSRVFKCNGSENDQMAFEFLSDEILEQDVVEEIECNPIFSISYTKRGESNMTYKNAFHKALISECDKFEEAFDFLDMGFCSNENLSILEEIHWIISYLKTNQWSTELDNCIHMCMYRNGYDAEYHRFDIPSKFLKDPINRTVNWTEVIEFILLIEDFQTKIEPWSSMKSHFCSKAHSVALECMKSEKRSLAEFVDKSKKTGKSKFDF*", "nuc": "ACTCCTATTTCGAAACAAACAAAAACAATCTCAAAATGTCGCAACTGTTACTCAACCAATATCGAAATAGGATATTGCACTGCCGTGAACCTGAAATAGCAAAGGATATATGGCGTGATCTATTGAATGATCGACACAACTACTTTTCTCGAGAATTTTGCAGAGCTGCAAACCTTGAGTATAGAAATGATGTTCCTGCTGAGGATATTTGTGCTGAAGTCCTCGATGGTTACAAAGCAAGGAAAGTGCGCTTTTGCACACCTGATAATTACTTACTACACGACGGGAAAATGTATATAATAGATTTCAAAGTGTCTGTGGACGATCGGTCTTCCAGAATTACAAGAGAGAAATACAATGAAATTTTTGGAGAAGTGTTCAACCCAGAAGGTGTGGACTTTGAAATCGTTATTATCAGGTTGGATCCTTCAAATATGGCTATACATGTTGACTCTCGAGATTTCATGAATACAATCGGACCAATCACGCTAAACATTAGTATGCAATGGTTTTTTGATATGAAAGACTTCTTATTTGGCAAATTCCGGGATGATGATAAATTCCATGCTATAATAAGTCAAGGAGAATTCACAATGACATTGCCATGGACCGAAGAAGATACTCCAGAATTGCTTACTCATCCTATATACAATGAGTTCATGAATTCAATGCCAGAGTCAGAACAGGCCCTGTTCAAAGAAGCATTGGAATTCAAATCATTCGGAGCAGAAAAATGGAATATTTTCTTAAAGGGAGTGATGTCTAAGTATGGTGAATATTATAAAGAATTTACCAAAGGACATGCCCAATCCATATTCTTGGCAACAGGGGACTACCCCAAACCAGATAAGGACCAAATTTCAGCTGGCTGGCGAGAGATGGTAAGTAGAGTGAGCTCTGAACGTGACATGTCAAATGACATAAATCAGGAAAAACCAAGCATACATTTTATATGGGCACAAAATGACTCAAGTAGCAATAATAACATACAGAAATTAATCAAACTATCCAAATCATTGCAAGCCATGAGTGGAACAGGAAGCTATGTAAGTGCTTTTAAATCATTAGGAAGATTGATGGATATATCATCAGACATCAAAAAGTATGAGTCGTTCTGCGGAAAATTAAAATCTTTGGCAAGGTCTAGCGTAAAGAAACTCGACAGGAAAATAGAACCGGTACAAATTGGAACAGCAACTGTCTTATGGGAGCAACAATTTAAATTAGATACGGATGTCATAAAAAGAGAGGACAGAATACATTTAATGAAAGATTATTTCGGAATTGGTAAACACAAGTCTTTTTCAAAAAAGCTAAACAATGACATAAATACCGATAAGCCTAAAATATTGAATTTTGACAATGACGATATAGTTAGGAAATGCAAAGATAAATATAACCAAGTCACACATAACTTGTCTCAAGTTAATGAATTAGACAAGATTGGAAATTATCTAGAGCATTTTTCAGCTAAAATTAGTGCCTGCAGTGTAGAAATGTGGGACTTTATATATAATACGACTAAAACCAAGTACTGGCAATGCATCAACGACTACTCTACCCTAATGAAAAACATGCTAGCTGTTTCCCAATATAATAGGCACAATACCTTTAGGATTGTCTCGTGTGCGAATAACAATGTATTTGGCCTAGTGATGCCAAGCTCAGACATAAAAACAAAAAAAGCAACATTAGTCTATGCAATAATAGCTCTCCACAATGAGGAGACAGAGATAGCAGAACTTGGTTCACTCTATTCCACTTTCAAGACAACAACAGGCTATATTTCAATATCAAAAGCTTTTAGGCTAGATAAAGAAAGGTGCCAGCGCATAGTGTCCTCTCCAGGCTTATTTCTTATGACAAGCTGTCTATTATTCAATGGTAATAAGAGTCTAGAGTTTGATAAGTTACTAGGCTTTTCATTTTTTACATCAATATCGATTACAAAAGCTATGCTCTCTCTTACTGAGCCTTCACGCTATATGATCATGAATTCATTGGCAGTTTCTAGCCATGTAAAAGAGTATATATCTGAAAAATTTTCTCCTTATACAAAAACAGCATTTTCTGTAGTGATGACAGATTTGATTAAAAAAGGTTGCTATTCAGCATATGAACAGAGGAAAAAGGTCCAAATAAGGGATATAAAGTTAACAGACTACGATATAACACAGAAAGGGGTAGATTCCAAAAGAGATCTTAAATCCATTTGGTTCCCGGGAAAGGTAAATTTAAAAGAATACTTGAACCAGATTTATTTACCATTTTATTTTAATTCCAAAGGATTGCATGAAAAGCATCATGTTTTAATAGATTTGGCTAAAACAGTGCTAGAAATCGAAAAAGAGCAAAGAGAATCATTACCTGAGCCATGGTCAGAGATACCTGCTAAGCAGACTGTCAACTTAAATATTTTGATTTACTCAATTGCAAGGAATTTGAACTTAGATACTTCAAGACATAATTTTGTGAGGAGCCGGGTGGAAAATGCAAATAACTTTAACAGATCTATAACAACAATATCCACCTTTACCAGCTCGAAATCATGCATTAAAATTGGTGATTTTGAGGAGGAGAAAAAGAAGAAAACTAAAAATGATGCAAAGAAACTAGCAAAAGATATTTCTAAATTAACTATAGCCAACCCAGCATTCTTAGATGAAATCACAAATGAACATGAGATAAGACACTCAACTTATGAGGATTTGAAACAATCTATCCCAGATTACACAGACTATATGTCTGTAAAAGTTTTTGACAGACTATATGAGAAGATTACTACTAACGAAATAAGTGATAAAGAAACAGTCAAGTTGATTCTAGAGACTATGAAGAAGCATAAAATATTTTACTTCGGATTCTTCAACAAAGGACAAAAAACAGCTAAAGATAGAGAAATATTTTTAGGTGAATTCGAGGCAAAAATGTGCCTGTACCTTGTTGAAAGAATAGCCAAAGAGAGATGCAAATTAAACCCAGAAGAAATGATAAGCGAACCAGGCGACTCTAAGTTAAGAGTATTAGAAAAGCAATCAGAAGATGAAATTAGGTATATCAGCAACACAATAAAGACATTGGGAAATGCCATAGAAAACCTGCAATCCGGGTCTTTAAATTGGGCAGATATATGTGAAAGTAAGGCACGAGGGCTTAAAATAGAAATAAATGCTGATATGTCTAAATGGAGTGCCCAAGATGTACTTTTCAAGTATTTCTGGCTGATAGTACTTGATCCTATCTTATATCCTGCTGAGAGGAAGAGAATAATTTATTTTCTATGTAATTATATGCAAAAAAGGCTTATAATGCCTGATGAATTGCTCACTACAATATTGGACCAGAGGGTTCCTTATTCAAATGATATAATTGGGTTGATGACAAACAATTACAGATCCAACACAGTAGAAATAAAGCGCAACTGGCTTCAAGGCAATTTAAATTATACAAGTAGTTACTTGCACAGCTGTAGTATGTCTGTATATAAAGACATAATAAGGGAAGCAGCAACATTATTAGAAGGGGAAGCCCTTGTGAATTCAATGGTACATTCTGATGATAATCAAACATCCATATGTATGGTGCAAAACAAGTTGCCAGATGACAATGTAATTGAATTTTGCATCAAGATATTCGAGAAGATATGTTTAACTTTTGGAAATCAGGCAAACATGAAAAAGACATACCTAACCAACTTCATCAAGGAATTTGTTTCTTTATTTAATATACACGGGGAGCCATTCTCTATATACGGGAGGTTTTTGCTTACAGCAGTAGGGGACTGTGCCTATCTGGGGCCTTATGAAGATTTAGCAAGTAGGCTATCTGCAACACAAACTGCTATAAAGCATGGCTGCCCACCATCACTGGCATGGGTATCCATTGCTTTGAATCACTGGATAACTCACACCACGTATAATATGTTACCTGGCCAAAATAATGACCCATTACCATTCTTCCCTACCAACAATAGAAATGAAATACCAGTGGAGATGTGTGGAATACTAGAAAGTGACTTATCAACAATTGCACTAACCGGTTTAGAAGCGGGAAATGTCACGTTTCTAACAAATATAGCAAGAAAACTATCATCTCCAATCTTGCAAAGAGAAAGTATCCAAGACCAATACAATTCTATAGAAAAATGGGACCTAAGTAGGTTATCGCAGATTGACATTCTGAGGCTTAAAATGCTTAGGTACATATCTCTTGATAGTTCGGTCACATCTGATGACGGTATGGGGGAGACCAGTGAAATGAGGTCGCGATCGCTTTTAACACCTCGTAAATTCACAACGAGTGGGTCACTCAATAGACTTAAATCGTATAAAGATTTTCAAAATATAATAACAGATGAGGATAAGACAAACGAGCTATTTGAGAATTTCATTAGGCATCCAGAGTTATTGGTCACAAAAGGCGAAACATTTGAAGAATTTGTCAATACAATATTATTTAGGTATAATTCAAAGAAATTCAAAGAATCTCTGTCAATACAAAATCCAGCACAACTCTTTATTGAGCAAATATTATTTTCCAACAAACCAATAATTGACTACACTAGCATACATGATAAGATTTTTGGATTGCAAGATATGCCAGGAATCGAAGAACTAGATACAATCATAGGCCGCAAAACATTTGTTGAAAGTTATGTCCAGATTGTAGATGATTTAAGCAACTTAACACTGGATATTAATGATGTCAAGACTATATTCGCCTTCTGTCTCATGAATGATCCACTACTAATTACATCCGCTAATAACATAATAATGTCTGTTAAAGGGCATAGCCAAGAAAGAATAGGACAATCAGCATGCAAAATGCCAGAGGTCAGGAGTCTGAAGCTTATACATTATTCACCAGCAGTTGTTTTGAGAGCCTATGTGAGAGGGCCAACAAATGTGCCAAATGCAGATATAGACGAGCTTGCGAGGGATCTATCTCATCTGGAAGATTTCATACAAAGCACAAAACTCAGAGAGAATATGAGAGAGAGAATAGAAATAAATGAGAAACGGCATTTAGGAAGAGATTTCAAGTTTGAAATCAAAGAATTGACTAGATTTTACCAAGTGTGTTATGATTATATAAAATCTACAGAACATAAAATTAAGGTATTCATATTGCCATACAAAGTTTTCACATCAATTGAATTCTGTGGCGCACTGACAGGGAACTTAATAAATGACAAATTGTGGTATATAACACATTACTTAAAAAATATAGTGTCTACTACACACAAGGCACAAATTTCGTCCTCACCTGAATTGGAATTGCAAATAGCTGATGAAGCACTGAGGCTAATAGCACATTTTGCCGATACTTTCTTGGCACCTGAATCAAGAATTCAATTTCTGAAAAAGGTTATCGAAGAATTCACATACAAAGGGATACCTGTAAAACATTTATATTCCAAAATAAAGAATTCCAAGTTGAGGGTCAAATTCTTAGGGATCCTTTTGTGGTTGGATGACCTAACACAAAATGATTTGGATAAGTTTGATGCAGATAAATCAGACGAAAAGATTATATGGAATAACTGGCAAGTATCAAGAGATATGAACACCGGACCAATAGATTTAATGATAAGTGGCTATTCCAGGCAACTGCGGATCACAGGGGAAGATGATAAATTGATTGCTGCTGAATTGCAAGTCACTAGATTGTCAGAAGATTTGATTTACAGACACGGCCAGGCAATGTTAAATAAACCGCACGGATTGAAGCTTGAAAAGATGCAGCCTGTAACTGAGATGTCTAAACAACTACATTATATCGTTTTCCAGCAGAGGTCAAGAAAGCGGTATTTCTATTCTATATTGCCCACCCAAATAATTGAAGATCATAATTCTAGAATCGAATCATCTAGGTTAAACAGAGATTCAAAATGGGTTCCTGTGTGTCCTGTTGCAGTATCAAAACTCTATCAGCAAGGACGACCTATACTTTCCAAGGTTAAGAATCTGAATATGCAGACTCATTCACTTTCTAGAATACAGGTTAATGTAGATGAATATGCCATTACAAGAAGAGCGCATTTCCAGAAGATGCCTTTCTTTGAAGGACCATCCATCCCTTCTGGTGGCATGGATCTATCAGAGTTAATGAAATCCACATCCTTATTGAGCTTAAATTATGACAATATAAAAAATGCTTCTTTATTGGATATGTCTAGAGTATTCAAGTGCAATGGCAGTGAAAATGACCAAATGGCTTTTGAGTTCCTGTCAGATGAAATTCTAGAGCAAGACGTAGTTGAAGAAATAGAATGCAACCCTATATTTTCTATCAGTTATACAAAAAGAGGAGAATCCAATATGACTTATAAAAATGCTTTCCACAAAGCTTTAATCTCAGAATGTGACAAATTTGAAGAAGCATTCGACTTTCTTGACATGGGGTTTTGCTCGAACGAGAACCTTAGTATTTTAGAGGAAATACATTGGATTATCAGTTATTTGAAGACGAATCAGTGGTCCACAGAACTAGACAATTGTATTCATATGTGTATGTATAGGAATGGGTATGATGCAGAGTATCATAGATTTGATATACCTTCTAAATTCCTCAAAGACCCGATAAACCGAACAGTAAATTGGACAGAGGTTATTGAGTTTATACTATTAATTGAAGATTTCCAAACAAAGATTGAGCCATGGTCGAGTATGAAGTCACATTTCTGTTCAAAAGCACACAGTGTAGCGTTAGAGTGCATGAAAAGCGAGAAAAGATCACTGGCAGAATTTGTAGACAAAAGTAAGAAAACTGGGAAATCCAAGTTTGATTTCTAAGGTATATGCATGTAAAAGTA" } -} \ No newline at end of file +} diff --git a/data/community/itps/orov/M/refseq/pathogen.json b/data/community/itps/orov/M/refseq/pathogen.json index a2436c56b..358f3bfb0 100644 --- a/data/community/itps/orov/M/refseq/pathogen.json +++ b/data/community/itps/orov/M/refseq/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/M/refseq", "reference accession": "NC_005775.1", - "reference name": "Oropouche virus, M segment" + "reference name": "Oropouche virus, M segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 31 - }, - { - "begin": 4294, - "end": 4385 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data/community/itps/orov/M/refseq/tree.json b/data/community/itps/orov/M/refseq/tree.json index 4cd145e70..63a469a64 100644 --- a/data/community/itps/orov/M/refseq/tree.json +++ b/data/community/itps/orov/M/refseq/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -81,7 +81,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 31 + }, + { + "begin": 4294, + "end": 4385 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -10183,4 +10197,4 @@ "M": "MANLIIISMVLGVAYGHPLSTSQIGDRCFAGGNLFKEMNLSVGLGEICVKDDISIVKSTTVFSKNKPALEATTKFYRSFIVKDWSECNPVLDKFGNFMVLSVDDNGHIIPKMYTCRAACDIRLNKDNAEIILSSTKLNHFEIVGTTSTSGWFKNTITNNLEHTCEHVTVNCGQKSVKFHACFRQHRGCIRFFKGTYMPYSMIEAMCVNIELIILTLYIFAAIIFALIITKSYVAYLLLPLFYPVTWFYGKVYKKINSCPNCLLASHPFTSCPKFCICGSRFSCTEALKVHRMGKDCLGYKSLSKARQMCKSKSWSFTAAILTGLILMEFISPIAGERMYKLEELADEFIKLTEQVNILEREMEVLKQSIIVMFAIILVLLLFENMIFNRLFRIFYRSCSMCGLIHYRPGLKIDLTKTNRCGSCICGFDEQQSSGFEYEIFLKDMHVQKESCKFSPRVNHFRNIKALLFALVICATIYTVYADEDCLSKDIKITYQELHNCIGPKIMGDTCVSKSELYSDLFSKNLVTEYDKKYFEPDTVNDQFNKIEFAQDAHRMILLERILYKTECEMLSLKKNSGPYNVAWRTYLKNHNIDLCSRHNYKMICQCINTHSMCNNTDIDYNKEIETYYKSNAAAYRADLNTIMDTLKTAFRGLTKVLIENYIEKDDSDALKALFSNITDSVQDNYQMIGILKFASKLLDINLGRSTRSAHHSIMTNEIPKSNPFTDYSYSNLNIKECMSPESLKCFKKRGSTPHTNHLLCKIDNKYKAFDWPEIETIQKGQKLCLGDSHCNLEFTAITADKIMSLTNCYKESFTAQPADMQAGIKKCSADEIGECTTLEDKTWPIIFCGGKYYYSDSKEHAKDGSINNYCLTNKCSEQRFPIHENWFKKCNWDKTHKEFSTMRQINYNDITSYRKAIESEIGTDLMTHHYKPTKNLPHVVPRYHSIDVQGTESTEGIINGFIQNTIPAISGLGVGYHLNFQSNQLFDIVIFVKKAVYKAQYQKAYTTGPSISINIEHNERCTGHCPEKIPAKEGWLTFSKEHTSSWGCEEYGCLAIDTGCLYGSCQDVIRPELDVYKKIGSEVSLIEICITLPHETYCNDMDILEPIIGDKLSASFQNTQTNQLPTLIAYKKGKIYTGQINDIGNTALQCGSIQVINGSTIGTGSPKFDYICHAMRRKDVIVRKCFNDNYQSCTRLEKRNDLIPYRKGDVIEVSKTGSNMGQMTFKIELGDINYKIFTKSIDLQMSGICAGCIDCAEGISCSINAEVPAETVCHCKTNCEDFINNIVFSPQIKNYNIKVHCKSKVEKITAHICGRDIDLQLTIKPYNQKIDLSQLDESNYIREEDLQCGTWLCKVQKEGIDIIFKGLFSGLGRYWTILIYSIIGVVIIVILVYILLPIGRLLKAFLIRHEIEYAMEQKIK*", "nuc": "AGTAGTGTGCTACCGGCAACAAACAGTGACAATGGCGAATTTAATAATTATTTCAATGGTTCTGGGCGTTGCCTATGGGCATCCGCTTTCAACAAGTCAAATTGGTGACCGCTGTTTTGCTGGTGGTAACCTCTTCAAGGAGATGAACTTGAGTGTAGGACTTGGCGAAATATGTGTTAAAGATGACATATCTATTGTTAAGAGTACTACTGTTTTTAGCAAGAATAAACCAGCTCTTGAGGCAACTACAAAATTTTATAGATCTTTTATTGTGAAAGATTGGTCTGAGTGCAATCCAGTGCTAGACAAATTTGGAAATTTTATGGTTTTAAGTGTTGATGATAATGGCCATATAATACCTAAAATGTATACATGTAGAGCAGCATGTGATATTAGATTAAACAAAGATAATGCCGAAATAATATTATCGTCAACAAAACTCAACCACTTTGAAATTGTCGGGACAACTTCGACATCAGGCTGGTTCAAGAACACAATAACAAACAACTTAGAACATACATGCGAGCATGTAACCGTAAATTGTGGTCAGAAATCAGTAAAATTCCATGCATGCTTTAGACAACATAGGGGTTGTATAAGATTCTTTAAAGGAACATATATGCCATACTCAATGATTGAAGCAATGTGCGTTAACATAGAGCTAATAATTCTGACATTATATATCTTTGCTGCAATTATATTTGCATTAATTATAACAAAGAGTTATGTGGCATACTTGCTCCTGCCGTTATTTTATCCAGTGACGTGGTTTTACGGAAAGGTTTATAAAAAGATTAATTCTTGCCCAAATTGTCTACTTGCATCTCACCCTTTCACCAGCTGCCCTAAATTCTGTATATGCGGTTCTAGGTTTAGTTGCACAGAAGCTCTTAAGGTACATAGAATGGGAAAGGACTGCTTAGGTTATAAGTCTCTAAGCAAAGCTAGACAGATGTGTAAATCGAAAAGCTGGTCCTTCACAGCAGCTATATTAACTGGATTAATATTGATGGAATTCATCTCACCAATTGCAGGAGAGAGAATGTATAAGCTTGAGGAGCTGGCTGATGAGTTTATAAAGCTAACAGAGCAGGTAAATATTTTAGAAAGAGAAATGGAAGTCTTGAAGCAGTCAATAATTGTTATGTTTGCAATCATTTTGGTATTGTTGCTTTTTGAAAATATGATATTCAACCGGCTTTTCCGCATTTTTTATCGTTCTTGCTCCATGTGCGGCTTGATACATTATAGACCAGGACTCAAGATCGATTTAACCAAAACTAACAGATGTGGTAGTTGCATCTGTGGATTCGACGAGCAGCAATCATCTGGTTTTGAATATGAAATATTTCTAAAGGATATGCATGTCCAGAAAGAATCATGCAAATTTAGTCCAAGAGTAAACCACTTTAGGAATATTAAAGCTTTATTATTTGCACTTGTAATCTGTGCTACTATATATACAGTTTATGCAGATGAAGATTGCTTATCTAAAGATATTAAAATAACATATCAAGAGTTGCACAATTGCATAGGTCCAAAGATAATGGGCGATACTTGTGTATCAAAGAGTGAATTGTATTCTGATTTATTCTCAAAAAATCTAGTCACAGAATATGATAAAAAATATTTTGAACCCGATACTGTAAATGATCAATTCAACAAGATAGAGTTTGCCCAAGATGCACATAGAATGATACTATTAGAAAGAATACTTTACAAGACAGAATGTGAAATGCTAAGCTTAAAAAAGAACAGTGGACCTTATAATGTTGCCTGGCGCACATATTTAAAAAATCATAATATAGACTTATGCAGTAGGCACAACTATAAAATGATATGTCAGTGTATTAATACACACTCTATGTGTAATAATACAGATATAGATTATAACAAAGAGATCGAAACATATTATAAAAGCAATGCTGCAGCCTATAGAGCTGACCTGAACACCATAATGGACACATTAAAAACAGCATTCAGAGGGCTTACAAAGGTCCTAATTGAAAATTATATAGAAAAAGATGACTCTGATGCTCTTAAGGCCTTATTTAGTAATATTACTGATTCTGTTCAGGACAATTATCAGATGATTGGAATATTGAAATTTGCCAGTAAGCTATTAGATATTAACCTTGGTAGATCCACCCGCTCAGCTCATCATTCTATAATGACAAACGAAATTCCCAAATCTAATCCTTTTACTGATTACAGTTATTCTAATCTGAATATAAAGGAGTGCATGTCACCAGAGAGCTTGAAATGTTTTAAGAAGAGAGGCAGTACACCGCATACAAACCACCTGCTTTGCAAGATAGACAACAAATATAAAGCATTTGACTGGCCAGAGATAGAAACAATTCAAAAAGGTCAAAAATTGTGCCTTGGTGACAGTCATTGCAACTTGGAATTTACAGCCATAACTGCAGACAAGATTATGTCATTAACTAACTGTTATAAAGAATCTTTCACTGCGCAACCAGCAGATATGCAGGCTGGAATTAAAAAATGCTCAGCTGATGAAATTGGAGAATGTACAACACTTGAAGACAAGACATGGCCAATTATATTCTGTGGTGGCAAATATTACTACTCTGATAGCAAGGAGCATGCCAAGGACGGTTCTATCAACAATTATTGTTTAACCAACAAATGCTCTGAACAACGTTTCCCAATACATGAAAATTGGTTCAAAAAATGTAATTGGGACAAGACCCACAAAGAATTTAGCACTATGAGACAAATAAACTATAATGATATAACTTCTTATAGAAAGGCAATAGAATCTGAGATAGGAACAGATTTGATGACACACCATTATAAGCCCACAAAGAACCTTCCACATGTTGTACCAAGGTATCATAGTATAGATGTACAAGGTACAGAATCAACAGAGGGTATTATCAATGGTTTCATACAAAATACAATACCTGCTATTAGTGGTCTAGGTGTCGGTTATCATCTGAATTTTCAAAGCAATCAGTTATTTGACATAGTTATTTTTGTGAAAAAAGCTGTATATAAAGCACAGTACCAGAAAGCATACACCACAGGTCCTAGCATATCCATAAATATTGAACACAACGAAAGATGCACAGGCCACTGCCCCGAAAAGATTCCTGCAAAAGAAGGTTGGTTAACATTTTCTAAAGAGCATACTAGTTCTTGGGGATGTGAAGAATATGGCTGTCTTGCTATAGATACAGGCTGTCTATATGGCTCTTGTCAAGATGTCATACGCCCAGAATTAGATGTTTATAAGAAGATTGGCAGTGAGGTATCACTGATAGAAATATGTATAACTTTGCCTCATGAAACTTATTGCAATGATATGGACATATTAGAACCGATTATAGGAGATAAATTAAGTGCATCCTTTCAGAATACACAGACTAATCAACTTCCGACCCTTATAGCTTATAAAAAAGGGAAGATATACACAGGTCAAATCAACGATATTGGAAACACAGCATTGCAGTGCGGCTCAATCCAAGTAATCAATGGATCAACTATCGGAACTGGCAGCCCCAAATTTGATTATATATGCCATGCTATGAGAAGGAAAGATGTTATTGTAAGGAAGTGTTTCAATGACAATTATCAGTCGTGCACTAGGCTAGAAAAACGGAACGACTTGATCCCTTATAGAAAAGGCGATGTCATCGAAGTATCAAAAACAGGATCGAACATGGGCCAAATGACATTTAAAATAGAACTAGGTGATATCAACTATAAAATATTTACTAAATCAATAGATCTTCAAATGTCTGGCATTTGTGCTGGGTGCATTGACTGTGCTGAAGGCATTTCATGCTCTATAAATGCTGAAGTGCCAGCCGAAACAGTCTGCCATTGCAAAACAAACTGTGAAGATTTTATAAACAATATAGTGTTTTCACCGCAAATCAAGAATTACAATATAAAAGTCCACTGTAAATCTAAAGTTGAAAAAATAACAGCACATATCTGTGGGAGAGACATTGATTTACAGTTAACAATTAAGCCATACAATCAGAAGATAGACTTGTCGCAGTTAGATGAATCAAATTACATAAGGGAAGAGGACCTCCAGTGTGGAACATGGTTATGTAAAGTGCAAAAAGAGGGGATTGATATTATATTTAAAGGATTATTTTCAGGCTTAGGGAGATATTGGACCATATTAATTTATTCAATTATAGGTGTGGTAATAATTGTGATATTGGTTTATATCCTGTTGCCCATAGGTCGGCTTTTAAAAGCATTCCTAATCAGACATGAAATAGAATATGCCATGGAGCAGAAAATCAAGTAGATTTGGCTAAAAAGGGTAGGCAGGTCTAAAATCAGGTATAAATAAAATTCATATAAATAAAGTCAAAAATTGTTGTCGGTAGCACACTACT" } -} \ No newline at end of file +} diff --git a/data/community/itps/orov/M/tefe/pathogen.json b/data/community/itps/orov/M/tefe/pathogen.json index 68326b1e5..1527dcb3e 100644 --- a/data/community/itps/orov/M/tefe/pathogen.json +++ b/data/community/itps/orov/M/tefe/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/M/tefe", "reference accession": "PP154171.1", - "reference name": "Oropouche virus ILMD_TF29 (tefe), M segment" + "reference name": "Oropouche virus ILMD_TF29 (tefe), M segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 20 - }, - { - "begin": 4283, - "end": 4371 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data/community/itps/orov/M/tefe/tree.json b/data/community/itps/orov/M/tefe/tree.json index ed3bece58..d11421f61 100644 --- a/data/community/itps/orov/M/tefe/tree.json +++ b/data/community/itps/orov/M/tefe/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -85,7 +85,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 20 + }, + { + "begin": 4283, + "end": 4371 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -10417,4 +10431,4 @@ "M": "MANLIIISMVLSVAYGHPLSTSQIGDRCFAGGNLFKEMNLSVGLGEICVKDDISIVKSTTVFSKNRPALEATTKFYRSFIVKDWSECNPVLDKFGNFMVLSVDDNGHIIPKMYTCRAACDIRLNKDNAEIILSSTKLNHFEIVGTTSTSGWFKNTITNNLEHTCEHVTVNCGQKSVKFHACFRQHRGCIRFFKGTYMPYSMIEAMCVNIELIILTLYIFAAIIFALIITKSYVAYLLLPLFYPVTWFYGKVYKKINSCPNCLLASHPFTSCPKICICGSRFSCTEALKVHRMGKDCLGYKSLSKARQMCKSKSWSFTAAILTGLILMEFISPIAGERMYKLEELADEFIKLTEQVNILEREMEVLKQSIIVMFAIILVLLLFENMIFNRLFSTFYRSCSMCGLIHYRPGLKVDLTKTNRCGSCICGFNEQQSSGFEYEIFLKDMHIQKESCKFSPRVNHFRNIKALLFALVICATIYTVYADEDCLSKDIKITYQELHNCIGPKIMGDTCVSKNELYSDLFSKNLVTEYDKKYFEPDTVNDQFNKIEFAQDAHRMILLERILYKTECEMLSLKKNSGPYNVAWRTYLKNHNIDLCSRHNYKMICQCINTHSMCKNTDIDYNKEIETYYKSNTAAYRADLNTIMDTLKTAFRGLTKVLIENYIEKDDSDALKALFSNITDSVQDNYQMIGILKFASKLLDINLGRSTRSARHSIMTNEIPKSNPFTDYSYSNVNIKECMSPESLKCFKKRDSTPHTNHLLCKIDSKYKAFDWPEIETIQKGQKLCLGDSHCNLEFTAITADKVMSLTNCYKESFTAQPADMQTGIKKCSADEIGECTTLEDKTWPIVFCGGKYYYSDSKEHAKDGSINNYCLTNKCSEQRFPIHENWFKKCNWDKTHKEFSTMRQINYNDITSYRKAIESEIGTDLMTHHYKPTKNLPHVVPRYHSIDVQGTESTEGIINGFIQNTIPAISGLGVGYHLNFKGNQLFDIVIFVKKAVYKAQYQKAYTTGPSISINIEHNERCTGHCPEKIPAKEGWLTFSKEHTSSWGCEEYGCLAIDTGCLYGSCQDVIRPELDVYKKIGSEASLIEICITLPHETYCNDMDILEPIIGDKLSASFQNTQTNQLPTLIAYKKGKIYTGQINDIGNTALQCGSIQVINGSTIGTGSPKFDYICHAMRRKDVIVRKCFNDNYQSCTRLEKRNDLIPYRKGDVIEVSKTGSNMGQMTFKIELGDINYKIFTKSIDLQMSGICAGCIDCAEGISCSINAEVSAETVCRCKTNCEDFINNIVFSPQIKNYNIKVHCKSKVEKIIAHICGRDIDLQLTVKPYNQKIDLSQLDESNYIREEDLQCGTWLCKVQKEGVDIIFKGLFSGLGRYWTILIYSIIGVVIIVILVYILLPIGRLLKAFLIRHEIEYAMEQKIK*", "nuc": "ACCAGCAACAAACAGTGACAATGGCGAATTTAATAATTATTTCAATGGTTCTGAGCGTTGCCTACGGGCATCCTCTTTCAACAAGTCAAATTGGTGACCGCTGTTTCGCTGGTGGTAACCTCTTCAAGGAGATGAACTTGAGTGTAGGACTTGGCGAAATATGTGTTAAAGATGACATATCTATTGTTAAAAGTACTACTGTTTTTAGTAAGAATAGACCAGCTCTTGAGGCAACCACAAAATTTTATAGATCTTTTATTGTGAAAGATTGGTCTGAATGCAATCCAGTGCTAGATAAATTTGGAAATTTTATGGTTTTAAGTGTTGATGATAATGGCCATATAATACCTAAAATGTACACATGTAGAGCAGCATGTGATATTAGATTAAACAAAGATAATGCTGAAATAATATTATCGTCAACAAAGCTCAACCACTTCGAAATTGTCGGAACAACTTCGACATCAGGCTGGTTCAAAAACACAATAACAAACAATTTGGAACACACATGCGAACATGTGACCGTAAATTGTGGTCAGAAATCAGTAAAATTCCATGCATGCTTTAGACAACATAGGGGTTGTATAAGATTCTTTAAAGGGACATATATGCCATACTCAATGATTGAAGCAATGTGTGTTAACATAGAGCTAATAATTCTGACATTATATATCTTTGCTGCAATTATATTTGCATTAATCATAACAAAGAGTTATGTGGCATACCTGCTCCTGCCGTTATTTTATCCAGTGACATGGTTTTACGGAAAGGTTTATAAAAAGATTAATTCCTGCCCAAATTGTCTACTTGCATCTCATCCTTTCACCAGCTGCCCTAAAATCTGTATATGCGGTTCTAGATTTAGTTGCACAGAAGCTCTTAAGGTGCATAGAATGGGTAAGGACTGTTTAGGTTATAAATCTCTAAGCAAAGCTAGACAGATGTGTAAATCGAAAAGCTGGTCCTTTACAGCAGCTATATTAACTGGATTAATATTGATGGAATTTATCTCACCAATTGCAGGAGAGAGAATGTATAAGCTTGAGGAGTTAGCTGATGAGTTTATAAAGCTAACAGAGCAGGTAAATATTTTAGAAAGAGAAATGGAAGTCTTGAAGCAATCAATAATTGTTATGTTTGCAATCATTTTGGTATTGTTGCTTTTTGAAAATATGATATTCAACCGACTTTTCAGCACTTTTTATCGTTCTTGCTCCATGTGTGGTTTGATACATTATAGACCAGGACTCAAGGTTGATTTAACCAAAACTAATAGATGCGGTAGTTGCATCTGTGGATTCAATGAGCAGCAATCATCTGGTTTTGAATATGAAATATTTCTAAAGGATATGCACATCCAGAAAGAATCATGCAAATTTAGTCCAAGAGTAAACCACTTTAGGAATATTAAAGCTTTATTATTTGCACTTGTAATCTGTGCTACTATATATACAGTTTATGCAGATGAAGATTGCTTGTCTAAAGACATTAAAATAACATATCAAGAGTTGCATAATTGCATAGGCCCAAAGATAATGGGCGACACTTGTGTATCAAAGAATGAATTGTATTCTGATTTATTCTCAAAAAATCTAGTCACAGAATATGATAAAAAATATTTTGAACCTGATACTGTAAATGATCAATTCAACAAAATAGAGTTTGCCCAAGATGCACATAGAATGATACTATTAGAAAGAATACTTTACAAGACAGAATGTGAAATGCTAAGCTTAAAAAAGAACAGTGGACCTTATAATGTTGCCTGGCGCACATATTTAAAAAATCATAATATAGACCTATGCAGTAGGCACAACTATAAAATGATATGTCAGTGTATTAATACGCACTCTATGTGTAAAAATACAGATATAGATTACAACAAAGAGATCGAAACATATTATAAAAGCAATACTGCAGCCTATAGAGCTGACCTGAACACCATAATGGACACATTAAAAACGGCATTCAGAGGGCTTACAAAGGTCCTAATTGAAAATTATATAGAAAAAGATGACTCTGATGCTCTTAAGGCTTTATTCAGTAATATTACTGATTCTGTCCAGGACAATTATCAGATGATTGGAATATTGAAATTTGCCAGTAAGCTATTAGATATTAACCTTGGTAGATCCACCCGCTCAGCTCGTCATTCTATAATGACAAACGAAATTCCCAAATCTAATCCTTTTACTGATTACAGTTATTCCAATGTGAACATAAAGGAGTGCATGTCACCAGAGAGCTTGAAATGTTTTAAGAAGAGAGACAGTACACCGCATACAAACCACCTGCTTTGCAAGATAGACAGCAAATATAAAGCATTTGACTGGCCAGAGATAGAAACAATTCAAAAAGGTCAAAAATTGTGTCTTGGTGACAGTCATTGCAACTTGGAATTTACAGCCATAACTGCAGATAAGGTTATGTCATTAACTAACTGTTATAAGGAATCTTTCACTGCGCAACCAGCAGATATGCAGACTGGAATTAAAAAATGCTCAGCTGATGAAATTGGAGAATGTACAACACTTGAAGACAAGACATGGCCGATCGTATTCTGTGGTGGCAAATATTACTACTCTGATAGCAAAGAGCATGCCAAGGACGGTTCTATCAACAACTATTGTTTAACCAACAAATGCTCTGAACAACGTTTTCCAATACATGAAAATTGGTTTAAAAAATGTAATTGGGACAAAACCCACAAAGAATTTAGTACTATGAGACAGATAAACTATAATGATATAACTTCTTATAGAAAAGCAATAGAATCTGAGATAGGAACAGATTTGATGACACACCATTATAAGCCCACAAAGAACCTTCCGCATGTTGTGCCAAGGTATCATAGTATAGATGTACAAGGTACAGAATCAACAGAGGGTATTATCAATGGTTTCATACAAAATACAATACCTGCTATTAGTGGTCTAGGTGTCGGTTATCATCTGAATTTCAAAGGCAATCAGTTATTTGACATAGTTATTTTTGTGAAAAAGGCTGTATATAAAGCACAGTACCAGAAAGCATACACCACAGGTCCCAGTATATCCATAAATATTGAACACAATGAAAGATGCACAGGCCACTGCCCCGAAAAGATTCCTGCAAAAGAAGGTTGGCTAACATTTTCTAAAGAACATACTAGTTCTTGGGGATGTGAAGAATACGGCTGTCTTGCTATAGATACAGGCTGTCTATATGGTTCTTGTCAAGATGTCATACGCCCAGAATTAGATGTTTATAAGAAGATTGGTAGTGAAGCATCACTGATAGAAATATGCATAACTTTGCCTCATGAAACTTATTGCAATGATATGGATATATTAGAACCGATTATAGGTGATAAATTAAGTGCATCCTTTCAGAATACGCAGACTAACCAACTTCCGACCCTTATAGCTTATAAAAAAGGGAAAATATACACAGGTCAAATCAATGATATTGGAAATACAGCATTGCAGTGCGGCTCGATCCAAGTAATTAATGGGTCAACTATCGGAACTGGCAGCCCCAAATTCGATTATATATGCCATGCTATGAGAAGGAAAGATGTTATTGTAAGGAAGTGTTTCAATGACAATTATCAGTCATGCACTAGGTTAGAAAAACGAAATGACTTGATCCCTTATAGAAAAGGCGATGTCATTGAAGTATCAAAAACAGGATCAAACATGGGCCAAATGACATTTAAAATAGAACTAGGTGATATCAACTATAAAATATTCACTAAATCAATAGATCTTCAAATGTCTGGCATTTGTGCTGGGTGCATTGACTGTGCTGAAGGTATTTCATGCTCTATAAATGCTGAAGTGTCGGCCGAAACAGTCTGCCGTTGTAAAACAAACTGTGAAGATTTTATAAATAATATAGTGTTTTCACCACAAATCAAGAATTACAATATTAAAGTCCACTGTAAATCTAAAGTTGAAAAGATAATAGCACATATCTGTGGGAGAGACATCGATTTACAATTAACTGTTAAACCATACAATCAGAAGATAGATTTGTCGCAGTTAGATGAATCAAATTATATAAGGGAAGAGGATCTCCAGTGCGGGACATGGTTATGTAAAGTGCAAAAAGAGGGGGTTGATATTATATTCAAAGGATTATTTTCAGGCTTAGGGAGATACTGGACCATATTGATTTATTCAATTATAGGTGTGGTAATAATTGTGATATTAGTTTATATCCTGTTGCCCATAGGTCGGCTTTTAAAAGCATTCCTAATCAGACATGAAATAGAATATGCCATGGAGCAAAAAATCAAGTAGATTTAGCTAAAAAGGGTAGGCAGGCCTAAGATCAGGTATAAATAAAATCCATATAAATAAAGTCAAAAATTGTTGTTGGTAGCACACT" } -} \ No newline at end of file +} diff --git a/data/community/itps/orov/S/refseq/pathogen.json b/data/community/itps/orov/S/refseq/pathogen.json index 094f8379a..051cafd92 100644 --- a/data/community/itps/orov/S/refseq/pathogen.json +++ b/data/community/itps/orov/S/refseq/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/S/refseq", "reference accession": "NC_005777.1", - "reference name": "Oropouche virus, S segment" + "reference name": "Oropouche virus, S segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 44 - }, - { - "begin": 740, - "end": 754 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data/community/itps/orov/S/refseq/tree.json b/data/community/itps/orov/S/refseq/tree.json index cff18d293..48a901322 100644 --- a/data/community/itps/orov/S/refseq/tree.json +++ b/data/community/itps/orov/S/refseq/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -76,7 +76,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 44 + }, + { + "begin": 740, + "end": 754 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -3770,4 +3784,4 @@ "NSs": "MYHNGLHLHLIRRQHMWHLKLDTDKCSMLVLLESSSSTKRRPKMSYVRHRGPWLTLLLVGSNLQWLITISHSSSRIQCRTTVLPCTVCQDT*", "nuc": "AGTAGTGTGCTCCACAATTCAAAACATAAAAAGAAATTCCAATAATGTCAGAGTTCATTTTCAACGATGTACCACAACGGACTACATCTACATTTGATCCGGAGGCAGCATATGTGGCATTTGAAGCTAGATACGGACAAGTGCTCAATGCTGGTGTTGTTAGAGTCTTCTTCCTCAACCAAAAGAAGGCCAAAGATGTCTTACGTAAGACATCGAGGCCCATGGTTGACCTTACTTTTGGTGGGGTCCAATTTGCAATGGTTAATAACCATTTCCCACAGTTCCAGTCGAATCCAGTGCCGGACAACGGTCTTACCCTGCACCGTCTGTCAGGATACCTAGCGCGCTGGGCCTTTACCCAGATGCGATCACCAATTAAGCAAGCTGAGTTCAGAGCCACTGTAGTAGTGCCTTTGGCTGAGGTAAAGGGCTGTACTTGGAATGATGGTGACGCAATGTACCTGGGGTTTGCTGCTGGTGCTGAGATGTTCCTGCAAACATTCACTTTCTTCCCTTTGGTGATTGAGATGCATAGGGTTCTCAAGGATGGCATGGATGTCAACTTTATGAAGAAAGTCCTCCGGCAGAGGTATGGTCAAAAGACTGCCGAGCAATGGATGCGTGAAGAAATAGTTGCTGTAAGAGCAGCTTTTGAAGCTGTAGGCACTCTGGCCTGGGCCAGAACTGGATTCTCCCCAGCAGCAAGAGACTTCTTGCGCCAATTCGGAATTGACATATAGTGGAGCACACTACT" } -} \ No newline at end of file +} diff --git a/data/community/itps/orov/S/tefe/pathogen.json b/data/community/itps/orov/S/tefe/pathogen.json index 5dc72fe6e..4e75f98b6 100644 --- a/data/community/itps/orov/S/tefe/pathogen.json +++ b/data/community/itps/orov/S/tefe/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/S/tefe", "reference accession": "PP154170.1", - "reference name": "Oropouche virus ILMD_TF29 (tefe), S segment" + "reference name": "Oropouche virus ILMD_TF29 (tefe), S segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 43 - }, - { - "begin": 739, - "end": 944 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data/community/itps/orov/S/tefe/tree.json b/data/community/itps/orov/S/tefe/tree.json index 88f12f2c5..3936b5632 100644 --- a/data/community/itps/orov/S/tefe/tree.json +++ b/data/community/itps/orov/S/tefe/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -92,7 +92,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 43 + }, + { + "begin": 739, + "end": 944 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -5869,4 +5883,4 @@ "NSs": "MYHNGLHLHLIRRQHMWHLKLDTDKCSMLVLLESSSSTKRRPKMSYVRHRGPWLTLLLVGSNLQWLITISHNSSRIQCRTTVLPCTVCQDT*", "nuc": "GTAGTGTACTCCACAATTCAAAACATAAAAAGAAATTCCAATAATGTCAGAGTTCATTTTCAACGATGTACCACAACGGACTACATCTACATTTGATCCGGAGGCAGCATATGTGGCATTTGAAGCTAGATACGGACAAGTGCTCAATGCTGGTGTTGTTAGAGTCTTCTTCCTCAACCAAAAGAAGGCCAAAGATGTCTTACGTAAGACATCGCGGCCCATGGTTGACCTTACTTTTGGTGGGGTCCAATTTGCAATGGTTAATAACCATTTCCCACAATTCCAGTCGAATCCAGTGCCGGACAACGGTCTTACCCTGCACCGTCTGTCAGGATACCTAGCTCGCTGGGCCTTCACCCAGATGCGATCACCTATTAAGCAAGCTGAGTTTAGGGCCACTGTGGTGGTGCCTTTGGCAGAGGTGAAGGGTTGTACTTGGAATGATGGTGACGCAATGTACCTGGGGTTTGCTGCCGGTGCTGAGATGTTTCTGCAAACATTTACTTTCTTCCCTCTGGTGATTGAGATGCATAGGGTCCTCAAGGACGGCATGGATGTCAACTTCATGAAGAAAGTCCTTCGGCAGAGGTATGGCCAGAAGACTGCTGAACAGTGGATGCGTGAAGAAATAGTTGCTGTAAGAGCAGCTTTTGAGGCTGTAGGCACTTTGGCCTGGGCCAGGACTGGATTCTCCCCAGCAGCAAGAGACTTCTTGCGCCAATTTGGAATTGACATATAGTGGAGTACAATAAACAAACAGAGTATAATATAAAATACAAAAAAAGAAATAAAATAACAAAAATACAAAAAAACTAAAAAATATATAAAATAAACAAAAAAAGTGCGAAAGCACAAAAAAGAACTGCAGCTGTAATATTATAAAGGGTTGGGTGGTTGGGGAAAGCTATGTCATTTTAGAAAACGTATTTTTGAATTGGGAGCAC" } -} \ No newline at end of file +} diff --git a/data/nextstrain/flu/h1n1pdm/ha/MW626062/tmp.tsv b/data/nextstrain/flu/h1n1pdm/ha/MW626062/tmp.tsv new file mode 100644 index 000000000..d80d4af21 --- /dev/null +++ b/data/nextstrain/flu/h1n1pdm/ha/MW626062/tmp.tsv @@ -0,0 +1,49 @@ +index seqName clade qc.overallScore qc.overallStatus totalSubstitutions totalDeletions totalInsertions totalFrameShifts totalMissing totalNonACGTNs totalAminoacidSubstitutions totalAminoacidDeletions totalAminoacidInsertions totalUnknownAa alignmentScore alignmentStart alignmentEnd coverage cdsCoverage isReverseComplement substitutions deletions insertions frameShifts aaSubstitutions aaDeletions aaInsertions privateNucMutations.reversionSubstitutions privateNucMutations.labeledSubstitutions privateNucMutations.unlabeledSubstitutions privateNucMutations.totalReversionSubstitutions privateNucMutations.totalLabeledSubstitutions privateNucMutations.totalUnlabeledSubstitutions privateNucMutations.totalPrivateSubstitutions privateAaMutations.reversionSubstitutions privateAaMutations.labeledSubstitutions privateAaMutations.unlabeledSubstitutions privateAaMutations.totalReversionSubstitutions privateAaMutations.totalLabeledSubstitutions privateAaMutations.totalUnlabeledSubstitutions privateAaMutations.totalPrivateSubstitutions missing founderMuts['clade'].nodeName founderMuts['clade'].substitutions founderMuts['clade'].deletions founderMuts['clade'].aaSubstitutions founderMuts['clade'].aaDeletions unknownAaRanges nonACGTNs qc.missingData.missingDataThreshold qc.missingData.score qc.missingData.status qc.missingData.totalMissing qc.mixedSites.mixedSitesThreshold qc.mixedSites.score qc.mixedSites.status qc.mixedSites.totalMixedSites qc.privateMutations.cutoff qc.privateMutations.excess qc.privateMutations.score qc.privateMutations.status qc.privateMutations.total qc.snpClusters.clusteredSNPs qc.snpClusters.score qc.snpClusters.status qc.snpClusters.totalSNPs qc.frameShifts.frameShifts qc.frameShifts.totalFrameShifts qc.frameShifts.frameShiftsIgnored qc.frameShifts.totalFrameShiftsIgnored qc.frameShifts.score qc.frameShifts.status qc.stopCodons.stopCodons qc.stopCodons.totalStopCodons qc.stopCodons.score qc.stopCodons.status totalPcrPrimerChanges pcrPrimerChanges failedCdses warnings errors +8 A/Missouri/263/2024 0 good 36 0 0 0 0 0 0 0 0 0 5112 1 1752 1 false G36A,G170A,G205A,A231C,C255T,C344T,A350T,C452T,C480T,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A749G,A827G,G847A,T851A,A900G,G950A,A968T,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,C1385T,A1422C,G1517A,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 0 +10 A/Washington/233/2024 0 good 37 0 0 0 0 0 0 0 0 0 5108 1 1752 1 false G36A,G170A,G205A,A231C,C255T,C344T,A350T,C452T,C480T,A496G,A497G,A542G,T620C,G627A,C636G,A717G,A742C,A749G,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,C1385T,A1422C,G1517A,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 0 +1 A/Massachusetts/90/2025 0 good 43 0 0 0 0 0 0 0 0 0 5084 1 1752 1 false G170A,G209A,A231C,C281A,A293G,A429G,C480T,A491G,A496G,A542G,T620C,G627A,C636G,A662G,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,T1005C,A1010G,A1106C,G1139T,G1145A,A1185G,T1199C,G1286A,A1323G,T1347C,C1364T,C1379T,A1422C,T1450C,A1556G,C1601T,G1616T,T1630C,G1728A,A1734T 0 0 0 0 0 0 0 0 0 +9 A/RhodeIsland/74/2024 0 good 38 0 0 0 0 0 0 0 0 0 5104 1 1752 1 false G36A,G170A,G205A,A231C,C255T,C344T,A350T,C452T,C480T,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A749G,A827G,G847A,T851A,A900G,G950A,A968G,G974A,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,C1385T,A1422C,G1517A,C1601T,G1616A,G1703A,G1728A 0 0 0 0 0 0 0 0 0 +0 A/Texas/303/2025 0 good 36 0 0 0 0 0 0 0 0 0 5112 1 1752 1 false C64T,G170A,A231C,G311A,T318C,T320C,G338T,A429G,T479C,A567G,A576C,T620C,G627A,C636G,A742C,G847A,T878C,G911A,A968G,A992G,A994G,T1023C,A1058G,T1199C,A1323G,T1347C,C1385T,C1442T,T1600C,C1601T,T1610C,T1611C,G1616A,A1646G,T1688C,C1739A 0 0 0 0 0 0 0 0 0 +12 A/Colorado/ISC-1030/2023 0 good 34 0 0 0 0 0 0 0 0 0 5120 1 1752 1 false G170A,G205A,A231C,C255T,G380A,G388A,C480T,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,C1268T,A1323G,T1347C,C1364T,A1422C,G1427A,C1601T,G1616A,T1688A,G1728A 0 0 0 0 0 0 0 0 0 +2 A/Iowa/72/2025 0 good 41 0 0 0 0 0 0 0 0 0 5092 1 1752 1 false G170A,A231C,C281A,A293G,G409A,A429G,C480T,C485T,A496G,A542G,T620C,G627A,C636G,A662G,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,T1005C,A1106C,G1139T,G1145A,A1185G,T1199C,G1286A,A1323G,T1347C,C1364T,A1422C,T1450C,A1556G,C1601T,G1616A,T1630C,G1728A,A1734T 0 0 0 0 0 0 0 0 0 +3 A/Washington/146/2025 0 good 36 0 0 0 0 0 0 0 0 0 5112 1 1752 1 false C64T,G170A,A231C,C248A,T276C,G311A,T318C,G338T,A429G,C480T,A567G,A576C,T620C,G627A,C636G,A742C,G847A,A968G,A992G,A994G,T1023C,A1058G,T1199C,A1323G,T1347C,C1385T,C1442T,C1526A,T1600C,C1601T,T1610C,T1611C,G1616A,A1646G,T1688C,C1739A 0 0 0 0 0 0 0 0 0 +17 A/Nebraska/7/2024 0 good 34 0 0 0 0 0 0 0 0 0 5120 1 1752 1 false G170A,A231C,C255T,G409A,C480T,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A773G,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,C1265T,A1323G,T1347C,G1350A,C1364T,A1422C,A1432G,C1601T,G1616A,C1647A,G1728A 0 0 0 0 0 0 0 0 0 +13 A/Florida/ISC-1213/2024 0 good 35 0 0 0 0 0 0 0 0 0 5116 1 1752 1 false G170A,G205A,A231C,C255T,T332C,C344T,C452T,C480T,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A749G,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,C1385T,A1422C,G1542A,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 0 +7 A/Massachusetts/ISC-1613/2025 0 good 45 0 0 0 0 1 0 0 0 0 5076 1 1752 0.9994292237442922 false G170A,A231C,C281A,A293G,G409A,A429G,T443C,C480T,A496G,A509G,A542G,T620C,G627A,C636G,A662G,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,T1005C,A1010G,A1106C,G1139T,G1145A,A1185G,T1199C,G1286A,A1323G,T1347C,T1352C,C1364T,A1422C,T1450C,C1496T,A1556G,C1601T,G1616A,T1630C,G1728A,A1734T 0 0 0 0 0 0 0 0 Y:294 0 +15 A/NewJersey/37/2024 0 good 35 0 0 0 0 1 0 0 0 0 5116 1 1752 0.9994292237442922 false A128G,G170A,A200G,G205A,A231C,C255T,C344T,C480T,C487A,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,T1253C,A1323G,T1347C,C1364T,C1385T,A1422C,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 R:771 0 +18 A/Michigan/87/2023 0 good 33 0 0 0 0 0 0 0 0 0 5124 1 1752 1 false G2A,G170A,A231C,C255T,G409A,C480T,A491G,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A773G,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,G1350A,C1364T,A1422C,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 0 +19 A/WestVirginia/62/2023 0 good 36 0 0 0 0 0 0 0 0 0 5112 1 1752 1 false G170A,G205A,A231C,C255T,G380A,C480T,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A975G,A994G,G1088A,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,A1422C,G1427A,C1601T,G1616A,T1688A,C1698T,A1710C,G1728A 0 0 0 0 0 0 0 0 0 +20 A/Pennsylvania/51/2023 0 good 23 0 0 0 0 0 0 0 0 0 5164 1 1752 1 false G170A,A231C,G311A,G338T,A429G,A576C,T620C,G627A,C636G,A742C,G847A,A968G,A992G,A994G,T1023C,T1199C,A1323G,T1347C,C1442T,C1601T,G1616A,A1646G,C1739A 0 0 0 0 0 0 0 0 0 +24 A/SouthCarolina/4/2023 0 good 28 0 0 0 0 0 0 0 0 0 5144 1 1752 1 false A42C,G119A,A218G,C305T,T461A,A516G,A539T,A552C,A631C,C636G,C768T,C797T,T809A,C820T,A879G,C965T,C1082T,G1100A,T1250G,G1301A,T1307C,T1310C,A1415G,A1421G,A1469G,C1589A,T1600C,A1640G 0 0 0 0 0 0 0 0 0 +23 A/Connecticut/1/2021 0 good 15 0 1 0 0 0 0 0 0 0 5196 1 1752 1 false G2A,G170A,A231C,G627A,C636G,A717G,A742C,C797T,G847A,A968G,A994G,T1199C,G1427A,C1601T,G1616A 0:G 0 0 0 0 0 0 0 0 0 +21 A/Utah/28/2023 0 good 33 0 0 0 0 0 0 0 0 0 5124 1 1752 1 false G170A,A231C,C255T,C480T,A496G,A542G,C590T,T620C,G627A,C636G,A717G,A742C,A827G,A845G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,A1422C,T1472C,C1492A,T1574G,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 0 +25 A/Mississippi/45/2022 0 good 21 0 0 0 0 0 0 0 0 0 5172 1 1752 1 false G170A,A231C,T318C,T324C,G351A,G627A,C636G,A717G,T737C,A742C,C797T,G847A,C890A,T959C,A968G,A994G,G1032A,T1199C,C1268T,C1601T,G1616A 0 0 0 0 0 0 0 0 0 +22 A/Florida/159/2022 0 good 31 0 0 0 0 0 0 0 0 0 5132 1 1752 1 false G170A,A231C,C255T,T453C,C480T,A496G,A542G,T620C,G627A,C636G,G650A,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,A1422C,A1532C,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 0 +26 A/SouthDakota/53/2022 0 good 22 0 0 0 0 0 0 0 0 0 5168 1 1752 1 false A80G,G170A,G179A,G213C,A231C,T263C,A287G,G338A,G455A,T620C,G627A,C636G,A742C,G847A,A968G,A994G,T1040C,T1199C,A1355G,A1553G,C1601T,G1616A 0 0 0 0 0 0 0 0 0 +28 A/SouthDakota/2/2023 0 good 29 0 0 0 0 0 0 0 0 0 5140 1 1752 1 false G170A,A231C,C255T,C480T,A496G,A542G,T620C,G627A,C636G,A683G,A717G,A742C,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,A1422C,C1601T,G1616A,G1644A,G1728A 0 0 0 0 0 0 0 0 0 +29 A/Wisconsin/118/2022 0 good 30 0 0 0 0 0 0 0 0 0 5136 1 1752 1 false G170A,A231C,C480T,A496G,A497G,A542G,C554T,T620C,G627A,C636G,A742C,A827G,A833G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,A1422C,C1424T,G1598A,C1601T,G1616A 0 0 0 0 0 0 0 0 0 +30 A/Oregon/66/2022 0 good 33 0 0 0 0 0 0 0 0 0 5124 1 1752 1 false G126A,G170A,A231C,A252C,G269A,G288T,A496G,T620C,G627A,C636G,C655T,A742C,G847A,T851A,C904T,G950A,A968G,A994G,T1130C,T1181C,T1199C,A1201G,A1247G,A1323G,A1343G,T1347C,A1367G,A1422C,A1430G,A1435C,C1601T,A1608G,G1616A 0 0 0 0 0 0 0 0 0 +5 A/NewYork/NIRC-IS-1098/2025 0 good 43 0 0 0 0 0 0 0 0 0 5084 1 1752 1 false G170A,G209A,A231C,C281A,A293G,A429G,C480T,A491G,A496G,A542G,T620C,G627A,C636G,A662G,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,T1005C,A1010G,G1100A,A1106C,G1139T,G1145A,A1185G,T1199C,G1286A,A1323G,T1347C,C1364T,A1422C,T1450C,A1556G,C1601T,G1616T,T1630C,G1728A,A1734T 0 0 0 0 0 0 0 0 0 +11 A/Texas/88/2023 0 good 27 0 0 0 0 0 0 0 0 0 5148 1 1752 1 false T83C,G170A,A231C,T318C,G338T,G515A,T620C,G627A,T629A,C636G,A742C,G824A,G847A,G852A,A968G,A994G,C998T,T1023C,T1199C,A1323G,T1347C,A1432G,A1593G,C1601T,G1616A,A1646G,C1673T 0 0 0 0 0 0 0 0 0 +32 A/Mississippi/17/2022 0 good 28 0 0 0 0 0 0 0 0 0 5144 1 1752 1 false G170A,A231C,C255T,C480T,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,A1422C,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 0 +14 A/Missouri/105/2024 0 good 34 0 0 0 0 0 0 0 0 0 5120 1 1752 1 false G170A,A231C,C255T,C344T,A429G,C480T,A496G,A542G,C605A,T620C,G627A,C636G,G660A,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,C1385T,A1422C,T1520C,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 0 +4 A/Hawaii/ISC-1127/2025 0 good 42 0 0 0 0 0 0 0 0 0 5088 1 1752 1 false G170A,G209A,A231C,C281A,A293G,A429G,C480T,A491G,A496G,A542G,T620C,G627A,C636G,A662G,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,T1005C,A1010G,A1106C,G1139T,G1145A,A1185G,T1199C,G1286A,A1323G,T1347C,C1364T,A1422C,T1450C,A1556G,C1601T,G1616T,T1630C,G1728A,A1734T 0 0 0 0 0 0 0 0 0 +6 A/Florida/ISC-1285/2025 0 good 36 0 0 0 0 0 0 0 0 0 5112 1 1752 1 false G170A,A231C,A268G,G311A,T318C,G338T,A429G,A576C,T620C,G627A,C636G,C644A,A717C,A742C,A743C,G847A,A968G,A992G,A994G,T1023C,T1199C,A1323G,T1347C,C1385T,A1415G,C1442T,A1553G,T1600C,C1601T,T1610C,T1611C,G1616A,G1629A,A1646G,T1688C,C1739A 0 0 0 0 0 0 0 0 0 +27 A/Florida/136/2022 0 good 34 0 1 0 0 0 0 0 0 0 5120 1 1752 1 false G2A,G170A,A231C,C480T,A496G,A497G,A542G,C554T,T620C,G627A,C636G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,T1217C,A1323G,T1347C,C1364T,G1376A,A1422C,C1424T,G1598A,C1601T,T1610C,G1616A,T1732C 0:G 0 0 0 0 0 0 0 0 0 +34 A/NewYork/4/2021 0 good 15 0 0 0 0 0 0 0 0 0 5196 1 1752 1 false G170A,A231C,T620C,G627A,C636G,C644T,A742C,G847A,C917T,A968G,A994G,G1032A,T1199C,C1601T,G1616A 0 0 0 0 0 0 0 0 0 +39 A/Maine/1/2021 0 good 25 0 0 0 0 0 0 0 0 0 5156 1 1752 1 false A42C,G119A,C389T,T461A,G486T,C493A,A539T,A552C,C563T,A631C,C636G,T809A,C820T,C941T,C965T,C1082T,T1250G,C1266A,G1301A,T1310C,A1415G,A1421G,A1469G,C1589A,A1640G 0 0 0 0 0 0 0 0 0 +35 A/Pennsylvania/47/2020 0 good 21 0 0 0 0 0 0 0 0 0 5172 1 1752 1 false A42C,T56C,G119A,C129A,T461A,A539T,A552C,A631C,C636G,A787G,T809A,C820T,C941T,C965T,C1082T,G1139A,G1169A,T1250G,G1301A,C1589A,G1598A 0 0 0 0 0 0 0 0 0 +31 A/Connecticut/40/2022 0 good 29 0 0 0 0 0 0 0 0 0 5140 1 1752 1 false G170A,A231C,C480T,A496G,A497G,A542G,C554T,T620C,G627A,C636G,A742C,A827G,G847A,T851A,A900G,G950A,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,T1352C,C1364T,A1422C,C1424T,G1583A,C1601T,G1616A 0 0 0 0 0 0 0 0 0 +36 A/Pennsylvania/31/2020 0 good 16 0 0 0 0 2 0 0 0 0 5192 1 1752 0.9988584474885844 false A42C,G119A,T461A,A539T,A552C,G588A,A631C,C636G,T809A,C820T,C941T,C965T,C1082T,T1250G,G1301A,C1589A 0 0 0 0 0 0 0 0 R:213,W:625 0 +16 A/Texas/26/2024 0 good 35 0 0 0 0 0 0 0 0 0 5116 1 1752 1 false G170A,G205A,A231C,C255T,C344T,C452T,C480T,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A749G,A827G,G847A,T851A,C887T,A900G,G950A,A968G,A994G,G1007A,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,C1385T,A1422C,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 0 +43 A/Massachusetts/16/2020 0 good 21 0 0 0 0 0 0 0 0 0 5172 1 1752 1 false A42C,G119A,G205A,C430T,T461A,C493T,C500T,A539T,A552C,A631C,C636G,T809A,C820T,C941A,C965T,T1049A,C1082T,T1250G,A1274G,G1301A,C1589A 0 0 0 0 0 0 0 0 0 +33 A/Ohio/3/2021-egg 0 good 24 0 0 0 0 0 0 0 0 0 5160 1 1752 1 false A42C,G119A,T230C,C389T,G409A,C452T,T461A,A539T,A552C,A631C,C636G,T809A,C820T,C965T,C1082T,T1250G,C1266A,G1301A,T1310C,A1415G,A1421G,A1469G,C1589A,A1640G 0 0 0 0 0 0 0 0 0 +42 A/Pennsylvania/91/2020 0 good 24 0 0 0 0 0 0 0 0 0 5160 1 1752 1 false A42C,T83C,G119A,A149G,T461A,A539T,A552C,T625C,A631C,C636G,T809A,C820T,C941T,C965T,G1032A,C1082T,G1139A,G1169A,T1250G,T1253C,G1301A,C1589A,G1598A,G1650T 0 0 0 0 0 0 0 0 0 +41 A/Iowa/5/2021 0 good 53 0 0 0 0 1 0 0 0 0 5044 1 1752 0.9994292237442922 false A42C,G119A,A146G,C161T,A188G,G210A,C215T,C222A,C284T,T324C,T384C,G410A,G428A,G456A,T461A,C480T,A536G,A539T,A552C,G588A,G596A,T625C,G685A,A776G,T809A,C820T,G849A,T851C,T854C,T923C,C965T,A977G,A1010G,C1016A,T1073A,C1082T,G1104A,A1192G,G1238A,T1250G,A1276G,G1301A,C1364T,C1385T,A1423C,C1460T,T1466C,C1487T,A1580G,C1584T,C1589A,T1631C,G1703A 0 0 0 0 0 0 0 0 Y:1673 0 +46 A/Indiana/1/2020 0 good 18 0 0 0 0 0 0 0 0 0 5184 1 1752 1 false A42C,C76T,G119A,A293G,T461A,A539T,A552C,C597T,A631C,C636G,T809A,C820T,C965T,C1082T,C1164T,T1250G,G1301A,C1589A 0 0 0 0 0 0 0 0 0 +40 A/Iowa/6/2021 0 good 53 0 0 0 0 0 0 0 0 0 5044 1 1752 1 false A42C,G119A,A146G,C161T,A188G,G210A,C215T,C222A,C284T,T324C,T384C,G410A,G428A,G456A,T461A,C480T,A536G,A539T,A552C,G588A,G596A,T625C,G685A,A776G,T809A,C820T,G849A,T851C,T854C,T923C,C965T,A977G,A1010G,C1016A,T1073A,C1082T,G1104A,A1192G,G1238A,T1250G,A1276G,G1301A,C1364T,C1385T,A1423C,C1460T,T1466C,C1487T,A1580G,C1584T,C1589A,T1631C,G1703A 0 0 0 0 0 0 0 0 0 +38 A/Maine/1/2021-egg 0 good 26 0 0 0 0 0 0 0 0 0 5152 1 1752 1 false A42C,G119A,C389T,T461A,G486T,C493A,A539T,A552C,C563T,A631C,C636G,G735A,T809A,C820T,C941T,C965T,C1082T,T1250G,C1266A,G1301A,T1310C,A1415G,A1421G,A1469G,C1589A,A1640G 0 0 0 0 0 0 0 0 0 +44 A/Texas/2/2020 0 good 15 0 0 0 0 1 0 0 0 0 5196 1 1752 0.9994292237442922 false A42C,G119A,T461A,A539T,A552C,A631C,C636G,T809A,C820T,C965T,C1082T,T1250G,G1301A,C1364T,C1589A 0 0 0 0 0 0 0 0 R:293 0 +45 A/Texas/134/2020 0 good 21 0 0 0 0 0 0 0 0 0 5172 1 1752 1 false A42C,G119A,T461A,A508G,A539T,A552C,T625C,A631C,C636G,T809A,C820T,C941T,C965T,C1016A,C1082T,G1139A,G1169A,T1250G,G1301A,C1589A,G1598A 0 0 0 0 0 0 0 0 0 +47 A/Texas/34/2020 0 good 17 0 0 0 0 0 0 0 0 0 5188 1 1752 1 false A42C,G119A,A293G,T461A,A539T,A552C,A631C,C636G,T809A,C820T,C965T,C1082T,G1145A,T1250G,G1301A,C1589A,C1659T 0 0 0 0 0 0 0 0 0 +37 A/Wisconsin/14/2021 0 good 26 0 0 0 0 0 0 0 0 0 5152 1 1752 1 false A42C,G119A,C389T,G409A,T461A,A539T,A552C,A631C,C636G,T809A,C820T,C941T,C965T,A1004G,C1082T,T1250G,C1266A,G1301A,T1310C,T1347C,A1415G,A1421G,A1448G,A1469G,C1589A,A1640G 0 0 0 0 0 0 0 0 0 diff --git a/data/nextstrain/orthohantavirus/andv/l/pathogen.json b/data/nextstrain/orthohantavirus/andv/l/pathogen.json index 217dac6c9..5cecd2ed5 100644 --- a/data/nextstrain/orthohantavirus/andv/l/pathogen.json +++ b/data/nextstrain/orthohantavirus/andv/l/pathogen.json @@ -13,9 +13,9 @@ "attributes": { "name": "Andesvirus (segment L)", "reference name": "Chile-9717869", - "reference accession": "NC_003468" + "reference accession": "NC_003468", + "experimental": true }, - "experimental": true, "alignmentParams": { "penaltyGapExtend": 1, "penaltyGapOpen": 8, @@ -59,4 +59,4 @@ "windowSize": 50 } } -} \ No newline at end of file +} diff --git a/data/nextstrain/orthohantavirus/andv/m/pathogen.json b/data/nextstrain/orthohantavirus/andv/m/pathogen.json index e10117588..4a51d4cdf 100644 --- a/data/nextstrain/orthohantavirus/andv/m/pathogen.json +++ b/data/nextstrain/orthohantavirus/andv/m/pathogen.json @@ -13,9 +13,9 @@ "attributes": { "name": "Andesvirus (segment M)", "reference name": "Chile-9717869", - "reference accession": "NC_003467" + "reference accession": "NC_003467", + "experimental": true }, - "experimental": true, "alignmentParams": { "penaltyGapExtend": 1, "penaltyGapOpen": 8, @@ -59,4 +59,4 @@ "windowSize": 50 } } -} \ No newline at end of file +} diff --git a/data/nextstrain/orthohantavirus/andv/s/pathogen.json b/data/nextstrain/orthohantavirus/andv/s/pathogen.json index 6234b2ea0..00df66bef 100644 --- a/data/nextstrain/orthohantavirus/andv/s/pathogen.json +++ b/data/nextstrain/orthohantavirus/andv/s/pathogen.json @@ -13,9 +13,9 @@ "attributes": { "name": "Andesvirus (segment S)", "reference name": "Chile-9717869", - "reference accession": "NC_003466" + "reference accession": "NC_003466", + "experimental": true }, - "experimental": true, "alignmentParams": { "penaltyGapExtend": 1, "penaltyGapOpen": 8, @@ -61,4 +61,4 @@ "windowSize": 50 } } -} \ No newline at end of file +} From f7f3ce3d4099dbea4ba670a3b6cedb3baa0079de Mon Sep 17 00:00:00 2001 From: Richard Neher Date: Tue, 12 May 2026 17:50:54 +0200 Subject: [PATCH 4/7] remove erroneously committed file --- .../flu/h1n1pdm/ha/MW626062/tmp.tsv | 49 ------------------- 1 file changed, 49 deletions(-) delete mode 100644 data/nextstrain/flu/h1n1pdm/ha/MW626062/tmp.tsv diff --git a/data/nextstrain/flu/h1n1pdm/ha/MW626062/tmp.tsv b/data/nextstrain/flu/h1n1pdm/ha/MW626062/tmp.tsv deleted file mode 100644 index d80d4af21..000000000 --- a/data/nextstrain/flu/h1n1pdm/ha/MW626062/tmp.tsv +++ /dev/null @@ -1,49 +0,0 @@ -index seqName clade qc.overallScore qc.overallStatus totalSubstitutions totalDeletions totalInsertions totalFrameShifts totalMissing totalNonACGTNs totalAminoacidSubstitutions totalAminoacidDeletions totalAminoacidInsertions totalUnknownAa alignmentScore alignmentStart alignmentEnd coverage cdsCoverage isReverseComplement substitutions deletions insertions frameShifts aaSubstitutions aaDeletions aaInsertions privateNucMutations.reversionSubstitutions privateNucMutations.labeledSubstitutions privateNucMutations.unlabeledSubstitutions privateNucMutations.totalReversionSubstitutions privateNucMutations.totalLabeledSubstitutions privateNucMutations.totalUnlabeledSubstitutions privateNucMutations.totalPrivateSubstitutions privateAaMutations.reversionSubstitutions privateAaMutations.labeledSubstitutions privateAaMutations.unlabeledSubstitutions privateAaMutations.totalReversionSubstitutions privateAaMutations.totalLabeledSubstitutions privateAaMutations.totalUnlabeledSubstitutions privateAaMutations.totalPrivateSubstitutions missing founderMuts['clade'].nodeName founderMuts['clade'].substitutions founderMuts['clade'].deletions founderMuts['clade'].aaSubstitutions founderMuts['clade'].aaDeletions unknownAaRanges nonACGTNs qc.missingData.missingDataThreshold qc.missingData.score qc.missingData.status qc.missingData.totalMissing qc.mixedSites.mixedSitesThreshold qc.mixedSites.score qc.mixedSites.status qc.mixedSites.totalMixedSites qc.privateMutations.cutoff qc.privateMutations.excess qc.privateMutations.score qc.privateMutations.status qc.privateMutations.total qc.snpClusters.clusteredSNPs qc.snpClusters.score qc.snpClusters.status qc.snpClusters.totalSNPs qc.frameShifts.frameShifts qc.frameShifts.totalFrameShifts qc.frameShifts.frameShiftsIgnored qc.frameShifts.totalFrameShiftsIgnored qc.frameShifts.score qc.frameShifts.status qc.stopCodons.stopCodons qc.stopCodons.totalStopCodons qc.stopCodons.score qc.stopCodons.status totalPcrPrimerChanges pcrPrimerChanges failedCdses warnings errors -8 A/Missouri/263/2024 0 good 36 0 0 0 0 0 0 0 0 0 5112 1 1752 1 false G36A,G170A,G205A,A231C,C255T,C344T,A350T,C452T,C480T,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A749G,A827G,G847A,T851A,A900G,G950A,A968T,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,C1385T,A1422C,G1517A,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 0 -10 A/Washington/233/2024 0 good 37 0 0 0 0 0 0 0 0 0 5108 1 1752 1 false G36A,G170A,G205A,A231C,C255T,C344T,A350T,C452T,C480T,A496G,A497G,A542G,T620C,G627A,C636G,A717G,A742C,A749G,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,C1385T,A1422C,G1517A,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 0 -1 A/Massachusetts/90/2025 0 good 43 0 0 0 0 0 0 0 0 0 5084 1 1752 1 false G170A,G209A,A231C,C281A,A293G,A429G,C480T,A491G,A496G,A542G,T620C,G627A,C636G,A662G,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,T1005C,A1010G,A1106C,G1139T,G1145A,A1185G,T1199C,G1286A,A1323G,T1347C,C1364T,C1379T,A1422C,T1450C,A1556G,C1601T,G1616T,T1630C,G1728A,A1734T 0 0 0 0 0 0 0 0 0 -9 A/RhodeIsland/74/2024 0 good 38 0 0 0 0 0 0 0 0 0 5104 1 1752 1 false G36A,G170A,G205A,A231C,C255T,C344T,A350T,C452T,C480T,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A749G,A827G,G847A,T851A,A900G,G950A,A968G,G974A,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,C1385T,A1422C,G1517A,C1601T,G1616A,G1703A,G1728A 0 0 0 0 0 0 0 0 0 -0 A/Texas/303/2025 0 good 36 0 0 0 0 0 0 0 0 0 5112 1 1752 1 false C64T,G170A,A231C,G311A,T318C,T320C,G338T,A429G,T479C,A567G,A576C,T620C,G627A,C636G,A742C,G847A,T878C,G911A,A968G,A992G,A994G,T1023C,A1058G,T1199C,A1323G,T1347C,C1385T,C1442T,T1600C,C1601T,T1610C,T1611C,G1616A,A1646G,T1688C,C1739A 0 0 0 0 0 0 0 0 0 -12 A/Colorado/ISC-1030/2023 0 good 34 0 0 0 0 0 0 0 0 0 5120 1 1752 1 false G170A,G205A,A231C,C255T,G380A,G388A,C480T,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,C1268T,A1323G,T1347C,C1364T,A1422C,G1427A,C1601T,G1616A,T1688A,G1728A 0 0 0 0 0 0 0 0 0 -2 A/Iowa/72/2025 0 good 41 0 0 0 0 0 0 0 0 0 5092 1 1752 1 false G170A,A231C,C281A,A293G,G409A,A429G,C480T,C485T,A496G,A542G,T620C,G627A,C636G,A662G,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,T1005C,A1106C,G1139T,G1145A,A1185G,T1199C,G1286A,A1323G,T1347C,C1364T,A1422C,T1450C,A1556G,C1601T,G1616A,T1630C,G1728A,A1734T 0 0 0 0 0 0 0 0 0 -3 A/Washington/146/2025 0 good 36 0 0 0 0 0 0 0 0 0 5112 1 1752 1 false C64T,G170A,A231C,C248A,T276C,G311A,T318C,G338T,A429G,C480T,A567G,A576C,T620C,G627A,C636G,A742C,G847A,A968G,A992G,A994G,T1023C,A1058G,T1199C,A1323G,T1347C,C1385T,C1442T,C1526A,T1600C,C1601T,T1610C,T1611C,G1616A,A1646G,T1688C,C1739A 0 0 0 0 0 0 0 0 0 -17 A/Nebraska/7/2024 0 good 34 0 0 0 0 0 0 0 0 0 5120 1 1752 1 false G170A,A231C,C255T,G409A,C480T,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A773G,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,C1265T,A1323G,T1347C,G1350A,C1364T,A1422C,A1432G,C1601T,G1616A,C1647A,G1728A 0 0 0 0 0 0 0 0 0 -13 A/Florida/ISC-1213/2024 0 good 35 0 0 0 0 0 0 0 0 0 5116 1 1752 1 false G170A,G205A,A231C,C255T,T332C,C344T,C452T,C480T,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A749G,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,C1385T,A1422C,G1542A,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 0 -7 A/Massachusetts/ISC-1613/2025 0 good 45 0 0 0 0 1 0 0 0 0 5076 1 1752 0.9994292237442922 false G170A,A231C,C281A,A293G,G409A,A429G,T443C,C480T,A496G,A509G,A542G,T620C,G627A,C636G,A662G,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,T1005C,A1010G,A1106C,G1139T,G1145A,A1185G,T1199C,G1286A,A1323G,T1347C,T1352C,C1364T,A1422C,T1450C,C1496T,A1556G,C1601T,G1616A,T1630C,G1728A,A1734T 0 0 0 0 0 0 0 0 Y:294 0 -15 A/NewJersey/37/2024 0 good 35 0 0 0 0 1 0 0 0 0 5116 1 1752 0.9994292237442922 false A128G,G170A,A200G,G205A,A231C,C255T,C344T,C480T,C487A,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,T1253C,A1323G,T1347C,C1364T,C1385T,A1422C,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 R:771 0 -18 A/Michigan/87/2023 0 good 33 0 0 0 0 0 0 0 0 0 5124 1 1752 1 false G2A,G170A,A231C,C255T,G409A,C480T,A491G,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A773G,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,G1350A,C1364T,A1422C,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 0 -19 A/WestVirginia/62/2023 0 good 36 0 0 0 0 0 0 0 0 0 5112 1 1752 1 false G170A,G205A,A231C,C255T,G380A,C480T,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A975G,A994G,G1088A,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,A1422C,G1427A,C1601T,G1616A,T1688A,C1698T,A1710C,G1728A 0 0 0 0 0 0 0 0 0 -20 A/Pennsylvania/51/2023 0 good 23 0 0 0 0 0 0 0 0 0 5164 1 1752 1 false G170A,A231C,G311A,G338T,A429G,A576C,T620C,G627A,C636G,A742C,G847A,A968G,A992G,A994G,T1023C,T1199C,A1323G,T1347C,C1442T,C1601T,G1616A,A1646G,C1739A 0 0 0 0 0 0 0 0 0 -24 A/SouthCarolina/4/2023 0 good 28 0 0 0 0 0 0 0 0 0 5144 1 1752 1 false A42C,G119A,A218G,C305T,T461A,A516G,A539T,A552C,A631C,C636G,C768T,C797T,T809A,C820T,A879G,C965T,C1082T,G1100A,T1250G,G1301A,T1307C,T1310C,A1415G,A1421G,A1469G,C1589A,T1600C,A1640G 0 0 0 0 0 0 0 0 0 -23 A/Connecticut/1/2021 0 good 15 0 1 0 0 0 0 0 0 0 5196 1 1752 1 false G2A,G170A,A231C,G627A,C636G,A717G,A742C,C797T,G847A,A968G,A994G,T1199C,G1427A,C1601T,G1616A 0:G 0 0 0 0 0 0 0 0 0 -21 A/Utah/28/2023 0 good 33 0 0 0 0 0 0 0 0 0 5124 1 1752 1 false G170A,A231C,C255T,C480T,A496G,A542G,C590T,T620C,G627A,C636G,A717G,A742C,A827G,A845G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,A1422C,T1472C,C1492A,T1574G,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 0 -25 A/Mississippi/45/2022 0 good 21 0 0 0 0 0 0 0 0 0 5172 1 1752 1 false G170A,A231C,T318C,T324C,G351A,G627A,C636G,A717G,T737C,A742C,C797T,G847A,C890A,T959C,A968G,A994G,G1032A,T1199C,C1268T,C1601T,G1616A 0 0 0 0 0 0 0 0 0 -22 A/Florida/159/2022 0 good 31 0 0 0 0 0 0 0 0 0 5132 1 1752 1 false G170A,A231C,C255T,T453C,C480T,A496G,A542G,T620C,G627A,C636G,G650A,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,A1422C,A1532C,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 0 -26 A/SouthDakota/53/2022 0 good 22 0 0 0 0 0 0 0 0 0 5168 1 1752 1 false A80G,G170A,G179A,G213C,A231C,T263C,A287G,G338A,G455A,T620C,G627A,C636G,A742C,G847A,A968G,A994G,T1040C,T1199C,A1355G,A1553G,C1601T,G1616A 0 0 0 0 0 0 0 0 0 -28 A/SouthDakota/2/2023 0 good 29 0 0 0 0 0 0 0 0 0 5140 1 1752 1 false G170A,A231C,C255T,C480T,A496G,A542G,T620C,G627A,C636G,A683G,A717G,A742C,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,A1422C,C1601T,G1616A,G1644A,G1728A 0 0 0 0 0 0 0 0 0 -29 A/Wisconsin/118/2022 0 good 30 0 0 0 0 0 0 0 0 0 5136 1 1752 1 false G170A,A231C,C480T,A496G,A497G,A542G,C554T,T620C,G627A,C636G,A742C,A827G,A833G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,A1422C,C1424T,G1598A,C1601T,G1616A 0 0 0 0 0 0 0 0 0 -30 A/Oregon/66/2022 0 good 33 0 0 0 0 0 0 0 0 0 5124 1 1752 1 false G126A,G170A,A231C,A252C,G269A,G288T,A496G,T620C,G627A,C636G,C655T,A742C,G847A,T851A,C904T,G950A,A968G,A994G,T1130C,T1181C,T1199C,A1201G,A1247G,A1323G,A1343G,T1347C,A1367G,A1422C,A1430G,A1435C,C1601T,A1608G,G1616A 0 0 0 0 0 0 0 0 0 -5 A/NewYork/NIRC-IS-1098/2025 0 good 43 0 0 0 0 0 0 0 0 0 5084 1 1752 1 false G170A,G209A,A231C,C281A,A293G,A429G,C480T,A491G,A496G,A542G,T620C,G627A,C636G,A662G,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,T1005C,A1010G,G1100A,A1106C,G1139T,G1145A,A1185G,T1199C,G1286A,A1323G,T1347C,C1364T,A1422C,T1450C,A1556G,C1601T,G1616T,T1630C,G1728A,A1734T 0 0 0 0 0 0 0 0 0 -11 A/Texas/88/2023 0 good 27 0 0 0 0 0 0 0 0 0 5148 1 1752 1 false T83C,G170A,A231C,T318C,G338T,G515A,T620C,G627A,T629A,C636G,A742C,G824A,G847A,G852A,A968G,A994G,C998T,T1023C,T1199C,A1323G,T1347C,A1432G,A1593G,C1601T,G1616A,A1646G,C1673T 0 0 0 0 0 0 0 0 0 -32 A/Mississippi/17/2022 0 good 28 0 0 0 0 0 0 0 0 0 5144 1 1752 1 false G170A,A231C,C255T,C480T,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,A1422C,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 0 -14 A/Missouri/105/2024 0 good 34 0 0 0 0 0 0 0 0 0 5120 1 1752 1 false G170A,A231C,C255T,C344T,A429G,C480T,A496G,A542G,C605A,T620C,G627A,C636G,G660A,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,C1385T,A1422C,T1520C,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 0 -4 A/Hawaii/ISC-1127/2025 0 good 42 0 0 0 0 0 0 0 0 0 5088 1 1752 1 false G170A,G209A,A231C,C281A,A293G,A429G,C480T,A491G,A496G,A542G,T620C,G627A,C636G,A662G,A717G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,T1005C,A1010G,A1106C,G1139T,G1145A,A1185G,T1199C,G1286A,A1323G,T1347C,C1364T,A1422C,T1450C,A1556G,C1601T,G1616T,T1630C,G1728A,A1734T 0 0 0 0 0 0 0 0 0 -6 A/Florida/ISC-1285/2025 0 good 36 0 0 0 0 0 0 0 0 0 5112 1 1752 1 false G170A,A231C,A268G,G311A,T318C,G338T,A429G,A576C,T620C,G627A,C636G,C644A,A717C,A742C,A743C,G847A,A968G,A992G,A994G,T1023C,T1199C,A1323G,T1347C,C1385T,A1415G,C1442T,A1553G,T1600C,C1601T,T1610C,T1611C,G1616A,G1629A,A1646G,T1688C,C1739A 0 0 0 0 0 0 0 0 0 -27 A/Florida/136/2022 0 good 34 0 1 0 0 0 0 0 0 0 5120 1 1752 1 false G2A,G170A,A231C,C480T,A496G,A497G,A542G,C554T,T620C,G627A,C636G,A742C,A827G,G847A,T851A,A900G,G950A,A968G,A994G,G1139T,G1145A,T1199C,T1217C,A1323G,T1347C,C1364T,G1376A,A1422C,C1424T,G1598A,C1601T,T1610C,G1616A,T1732C 0:G 0 0 0 0 0 0 0 0 0 -34 A/NewYork/4/2021 0 good 15 0 0 0 0 0 0 0 0 0 5196 1 1752 1 false G170A,A231C,T620C,G627A,C636G,C644T,A742C,G847A,C917T,A968G,A994G,G1032A,T1199C,C1601T,G1616A 0 0 0 0 0 0 0 0 0 -39 A/Maine/1/2021 0 good 25 0 0 0 0 0 0 0 0 0 5156 1 1752 1 false A42C,G119A,C389T,T461A,G486T,C493A,A539T,A552C,C563T,A631C,C636G,T809A,C820T,C941T,C965T,C1082T,T1250G,C1266A,G1301A,T1310C,A1415G,A1421G,A1469G,C1589A,A1640G 0 0 0 0 0 0 0 0 0 -35 A/Pennsylvania/47/2020 0 good 21 0 0 0 0 0 0 0 0 0 5172 1 1752 1 false A42C,T56C,G119A,C129A,T461A,A539T,A552C,A631C,C636G,A787G,T809A,C820T,C941T,C965T,C1082T,G1139A,G1169A,T1250G,G1301A,C1589A,G1598A 0 0 0 0 0 0 0 0 0 -31 A/Connecticut/40/2022 0 good 29 0 0 0 0 0 0 0 0 0 5140 1 1752 1 false G170A,A231C,C480T,A496G,A497G,A542G,C554T,T620C,G627A,C636G,A742C,A827G,G847A,T851A,A900G,G950A,A994G,G1139T,G1145A,T1199C,A1323G,T1347C,T1352C,C1364T,A1422C,C1424T,G1583A,C1601T,G1616A 0 0 0 0 0 0 0 0 0 -36 A/Pennsylvania/31/2020 0 good 16 0 0 0 0 2 0 0 0 0 5192 1 1752 0.9988584474885844 false A42C,G119A,T461A,A539T,A552C,G588A,A631C,C636G,T809A,C820T,C941T,C965T,C1082T,T1250G,G1301A,C1589A 0 0 0 0 0 0 0 0 R:213,W:625 0 -16 A/Texas/26/2024 0 good 35 0 0 0 0 0 0 0 0 0 5116 1 1752 1 false G170A,G205A,A231C,C255T,C344T,C452T,C480T,A496G,A542G,T620C,G627A,C636G,A717G,A742C,A749G,A827G,G847A,T851A,C887T,A900G,G950A,A968G,A994G,G1007A,G1139T,G1145A,T1199C,A1323G,T1347C,C1364T,C1385T,A1422C,C1601T,G1616A,G1728A 0 0 0 0 0 0 0 0 0 -43 A/Massachusetts/16/2020 0 good 21 0 0 0 0 0 0 0 0 0 5172 1 1752 1 false A42C,G119A,G205A,C430T,T461A,C493T,C500T,A539T,A552C,A631C,C636G,T809A,C820T,C941A,C965T,T1049A,C1082T,T1250G,A1274G,G1301A,C1589A 0 0 0 0 0 0 0 0 0 -33 A/Ohio/3/2021-egg 0 good 24 0 0 0 0 0 0 0 0 0 5160 1 1752 1 false A42C,G119A,T230C,C389T,G409A,C452T,T461A,A539T,A552C,A631C,C636G,T809A,C820T,C965T,C1082T,T1250G,C1266A,G1301A,T1310C,A1415G,A1421G,A1469G,C1589A,A1640G 0 0 0 0 0 0 0 0 0 -42 A/Pennsylvania/91/2020 0 good 24 0 0 0 0 0 0 0 0 0 5160 1 1752 1 false A42C,T83C,G119A,A149G,T461A,A539T,A552C,T625C,A631C,C636G,T809A,C820T,C941T,C965T,G1032A,C1082T,G1139A,G1169A,T1250G,T1253C,G1301A,C1589A,G1598A,G1650T 0 0 0 0 0 0 0 0 0 -41 A/Iowa/5/2021 0 good 53 0 0 0 0 1 0 0 0 0 5044 1 1752 0.9994292237442922 false A42C,G119A,A146G,C161T,A188G,G210A,C215T,C222A,C284T,T324C,T384C,G410A,G428A,G456A,T461A,C480T,A536G,A539T,A552C,G588A,G596A,T625C,G685A,A776G,T809A,C820T,G849A,T851C,T854C,T923C,C965T,A977G,A1010G,C1016A,T1073A,C1082T,G1104A,A1192G,G1238A,T1250G,A1276G,G1301A,C1364T,C1385T,A1423C,C1460T,T1466C,C1487T,A1580G,C1584T,C1589A,T1631C,G1703A 0 0 0 0 0 0 0 0 Y:1673 0 -46 A/Indiana/1/2020 0 good 18 0 0 0 0 0 0 0 0 0 5184 1 1752 1 false A42C,C76T,G119A,A293G,T461A,A539T,A552C,C597T,A631C,C636G,T809A,C820T,C965T,C1082T,C1164T,T1250G,G1301A,C1589A 0 0 0 0 0 0 0 0 0 -40 A/Iowa/6/2021 0 good 53 0 0 0 0 0 0 0 0 0 5044 1 1752 1 false A42C,G119A,A146G,C161T,A188G,G210A,C215T,C222A,C284T,T324C,T384C,G410A,G428A,G456A,T461A,C480T,A536G,A539T,A552C,G588A,G596A,T625C,G685A,A776G,T809A,C820T,G849A,T851C,T854C,T923C,C965T,A977G,A1010G,C1016A,T1073A,C1082T,G1104A,A1192G,G1238A,T1250G,A1276G,G1301A,C1364T,C1385T,A1423C,C1460T,T1466C,C1487T,A1580G,C1584T,C1589A,T1631C,G1703A 0 0 0 0 0 0 0 0 0 -38 A/Maine/1/2021-egg 0 good 26 0 0 0 0 0 0 0 0 0 5152 1 1752 1 false A42C,G119A,C389T,T461A,G486T,C493A,A539T,A552C,C563T,A631C,C636G,G735A,T809A,C820T,C941T,C965T,C1082T,T1250G,C1266A,G1301A,T1310C,A1415G,A1421G,A1469G,C1589A,A1640G 0 0 0 0 0 0 0 0 0 -44 A/Texas/2/2020 0 good 15 0 0 0 0 1 0 0 0 0 5196 1 1752 0.9994292237442922 false A42C,G119A,T461A,A539T,A552C,A631C,C636G,T809A,C820T,C965T,C1082T,T1250G,G1301A,C1364T,C1589A 0 0 0 0 0 0 0 0 R:293 0 -45 A/Texas/134/2020 0 good 21 0 0 0 0 0 0 0 0 0 5172 1 1752 1 false A42C,G119A,T461A,A508G,A539T,A552C,T625C,A631C,C636G,T809A,C820T,C941T,C965T,C1016A,C1082T,G1139A,G1169A,T1250G,G1301A,C1589A,G1598A 0 0 0 0 0 0 0 0 0 -47 A/Texas/34/2020 0 good 17 0 0 0 0 0 0 0 0 0 5188 1 1752 1 false A42C,G119A,A293G,T461A,A539T,A552C,A631C,C636G,T809A,C820T,C965T,C1082T,G1145A,T1250G,G1301A,C1589A,C1659T 0 0 0 0 0 0 0 0 0 -37 A/Wisconsin/14/2021 0 good 26 0 0 0 0 0 0 0 0 0 5152 1 1752 1 false A42C,G119A,C389T,G409A,T461A,A539T,A552C,A631C,C636G,T809A,C820T,C941T,C965T,A1004G,C1082T,T1250G,C1266A,G1301A,T1310C,T1347C,A1415G,A1421G,A1448G,A1469G,C1589A,A1640G 0 0 0 0 0 0 0 0 0 From c9eda23f642c2f6e98814021a1e078e3b8285384 Mon Sep 17 00:00:00 2001 From: nextstrain-bot Date: Tue, 12 May 2026 15:53:33 +0000 Subject: [PATCH 5/7] chore: rebuild [skip ci] --- .../itps/orov/L/refseq/unreleased/dataset.zip | Bin 1380562 -> 1380636 bytes .../orov/L/refseq/unreleased/pathogen.json | 16 ++--------- .../itps/orov/L/refseq/unreleased/tree.json | 20 +++++++++++-- .../itps/orov/L/tefe/unreleased/dataset.zip | Bin 1410620 -> 1410694 bytes .../itps/orov/L/tefe/unreleased/pathogen.json | 16 ++--------- .../itps/orov/L/tefe/unreleased/tree.json | 20 +++++++++++-- .../itps/orov/M/refseq/unreleased/dataset.zip | Bin 966006 -> 966080 bytes .../orov/M/refseq/unreleased/pathogen.json | 16 ++--------- .../itps/orov/M/refseq/unreleased/tree.json | 20 +++++++++++-- .../itps/orov/M/tefe/unreleased/dataset.zip | Bin 1048535 -> 1048609 bytes .../itps/orov/M/tefe/unreleased/pathogen.json | 16 ++--------- .../itps/orov/M/tefe/unreleased/tree.json | 20 +++++++++++-- .../itps/orov/S/refseq/unreleased/dataset.zip | Bin 357044 -> 357118 bytes .../orov/S/refseq/unreleased/pathogen.json | 16 ++--------- .../itps/orov/S/refseq/unreleased/tree.json | 20 +++++++++++-- .../itps/orov/S/tefe/unreleased/dataset.zip | Bin 925189 -> 925263 bytes .../itps/orov/S/tefe/unreleased/pathogen.json | 16 ++--------- .../itps/orov/S/tefe/unreleased/tree.json | 20 +++++++++++-- data_output/index.json | 27 ++++++++++++------ .../andv/l/unreleased/dataset.zip | Bin 311155 -> 311157 bytes .../andv/l/unreleased/pathogen.json | 4 +-- .../andv/m/unreleased/dataset.zip | Bin 328326 -> 328328 bytes .../andv/m/unreleased/pathogen.json | 4 +-- .../andv/s/unreleased/dataset.zip | Bin 244944 -> 244946 bytes .../andv/s/unreleased/pathogen.json | 4 +-- 25 files changed, 138 insertions(+), 117 deletions(-) diff --git a/data_output/community/itps/orov/L/refseq/unreleased/dataset.zip b/data_output/community/itps/orov/L/refseq/unreleased/dataset.zip index 24e826e8060d8796d5f83d323bcb53037224b5f0..cfe6a6ca9551a4cfdcfe23a6845990f6372b2022 100644 GIT binary patch delta 407 zcmcb#Fl5f6kPYJOT$fXRt?l4oVCdl3tjIo>kwu3~L1FSiPO-`RIHH>GaJJv!WCUWS z?RPktt+=^*?mV0I;Flo7gJ0VfM45dUnGWyTUL?jWz~%?ir=XyeT2YdkSDcxjSFB{E zPz@FXisk`@lXDVNQjr9K!UZ{r$*H-ic_s0=iN)FRMTvRosUUsPT+Hfo{yA)4dy+IoZGt zs%>wQVFqFrAZ7((HXvpPVh$kY1Y#~A<_2OOAm#;PJ|N}?VgVo)1Y#i|7T(?@BQo<7 zBiD3ke$k^yp*Z~&zo<9U9{%a(0;1N8LDP!`M3rO^!6wMS$$$V$7~@2yZxj%fW=rK4 H1quTIi4}D# delta 389 zcmbQUDCE+@kPYJOT!n{qE*fz%Fc@)eR%D;cIQa%gly5;!VsdJ3YF>$NVsUm*VqSV` zv67WSG?xMpRD($c1*N3a^vpb9HCdilR75GYq9C;>6XcG>9H3lDQE6(kE@!(g zCnFFuZP(>ww&&)mc;!3e%}+swH$S(Ri7@*xa>SGx7^Eepq)yioWtQLmRFwHWYx`*# zW*}w(Vi21Rh}nUd1Bf|+mw!#3|rYY|734sWYOVLP?%iDB{sR5GpczeSNlvZMj&R| zK9h^Ngp(^fyWcvvP>3P8aJ#q&vlk=N;a%I)MVXhd`hoN*C@7^?l%(brXXfV>D_JR2 zgT;WNc|hUhoWzt=Btf8XK~7?FYHn&?NqlZ%adv!BVqSVGNMAJ9bj4z32_>bZ)bz|e zpnw6ybdU`opp=@I0u(hi<(e)S#w? ztZnC(W(HywAZ7((HXvpPVh$kY1Y#~A<_2OOAm#;PJ|N}?VgVo)1Y#i|76xLG?cCC$ zRhf)j(_33ak0J%=^pI9jZ>EEM(-*diS~Gf1zuPLRB#j6`AqGwc1X#itI$f$wREF(* IizrYO0J9=$d;kCd delta 395 zcmZqc4cpTbw&6WH*CVErg7NGO4Dsxnf3i0*vT-RW)ar0e4&alVyoJ+Rt{^8dIW;#m zuf#X8I6EjYFFmzb$x0y_s7gVhnrr%ADP{>BrPRC>prElSSQMxmA_*cD6qJ%u(=+pc z(q`tCCOTZx<)xX$6J7XZtHo zMj&R|{)&^il9S6XSae@}fe=G{!S-BXW-msLm{J3Sw8WIu>GC4X^4o8TFgLTdhe$I6 zF$)lb*la+|4#XTl%n8I?K+FxqJV49~#C$-^55xjMEC|FxKr9TzBHKfxMXNHWpKlR8 ziWErG=e3G@GiCEnf88o-&G>n`dYh<{Ey7ts44e!Iu!QlyFf&6*QEIAQR&jn_fHx}} RNRk~07cw$1w6=%>c>uLkYRUir diff --git a/data_output/community/itps/orov/L/tefe/unreleased/pathogen.json b/data_output/community/itps/orov/L/tefe/unreleased/pathogen.json index ee433a3b6..bca26ae6d 100644 --- a/data_output/community/itps/orov/L/tefe/unreleased/pathogen.json +++ b/data_output/community/itps/orov/L/tefe/unreleased/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/L/tefe", "reference accession": "PP154172.1", - "reference name": "Oropouche virus ILMD_TF29 (tefe), L segment" + "reference name": "Oropouche virus ILMD_TF29 (tefe), L segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 35 - }, - { - "begin": 6794, - "end": 6814 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data_output/community/itps/orov/L/tefe/unreleased/tree.json b/data_output/community/itps/orov/L/tefe/unreleased/tree.json index cd5a4f5e4..855753c83 100644 --- a/data_output/community/itps/orov/L/tefe/unreleased/tree.json +++ b/data_output/community/itps/orov/L/tefe/unreleased/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -81,7 +81,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 35 + }, + { + "begin": 6794, + "end": 6814 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -9958,4 +9972,4 @@ "L": "MSQLLLNQYRNRILHCREPEIAKDIWRDLLNDRHNYFSREFCRAANLEYRNDVPAEDICAEVLDGYKARKVRFCTPDNYLLHDGKMYIIDFKVSVDDRSSRITREKYNEIFGEVFNPEGVDFEIVIIRLDPSNMAIHVDSRDFMNTIGPITLNISMQWFFDMKDFLFGKFRDDDKFHAIISQGEFTMTLPWTEEDTPELLTHPIYNEFMNSMPESEQALFKEALEFKSFGAEKWNIFLKGVMSKYGEYYKEFTKGHAQSIFLATGDYPKPDKDQISAGWREMVSRVSSERDMSNDINQEKPSIHFIWAQNDSSSNNNIQKLIKLSKSLQAMSGTGSYVSAFKSLGRLMDISSDIKKYESFCGKLKSLARSSVKKLDRKIEPVQIGTATVLWEQQFKLDTDVIKREDRIHLMKDYFGIGKHKSFSKKLNNDINTDKPKILNFDNDDIVRKCKDKYNQVTHNLSQVNELDKIGNYLEHFSAKISACSVEMWDFIYNTTKTKYWQCINDYSTLMKNMLAVSQYNRHNTFRIVSCANNNVFGLVMPSSDIKTKKATLVYAIIALHNEETEIAELGSLYSTFKTTTGYISISKAFRLDKERCQRIVSSPGLFLMTSCLLFNGNKSLEFDKLLGFSFFTSISITKAMLSLTEPSRYMIMNSLAVSSHVKEYISEKFSPYTKTAFSVVMTDLIKKGCYSAYEQRKKVQIRDIKLTDYDITQKGVDSKRDLKSIWFPGKVNLKEYLNQIYLPFYFNSKGLHEKHHVLIDLAKTVLEIEKEQRESLPEPWSEIPAKQTVNLNILIYSIARNLNLDTSRHNFVRSRVENANNFNRSITTISTFTSSKSCIKIGDFEEEKKKKTKNDAKKLAKDISKLTIANPAFLDEITNEHEIRHSTYEDLKQSIPDYTDYMSVKVFDRLYEKITTNEISDKETVKLILETMKKHKIFYFGFFNKGQKTAKDREIFLGEFEAKMCLYLVERIAKERCKLNPEEMISEPGDSKLRVLEKQSEDEIRYISNTIKTLGNAIENLQSGSLNWADICESKARGLKIEINADMSKWSAQDVLFKYFWLIVLDPILYPAERKRIIYFLCNYMQKRLIMPDELLTTILDQRVPYSNDIIGLMTNNYRSNTVEIKRNWLQGNLNYTSSYLHSCSMSVYKDIIREAATLLEGEALVNSMVHSDDNQTSICMVQNKLPDDNVIEFCIKIFEKICLTFGNQANMKKTYLTNFIKEFVSLFNIHGEPFSIYGRFLLTAVGDCAYLGPYEDLASRLSATQTAIKHGCPPSLAWVSIALNHWITHTTYNMLPGQNNDPLPFFPTNNRNEIPVEMCGILESDLSTIALTGLEAGNVTFLTNIARKLSSPILQRESIQDQYNSIEKWDLSRLSQIDILRLKMLRYISLDSSVTSDDGMGETSEMRSRSLLTPRKFTTSGSLNRLKSYKDFQNIITDEDKTNELFENFIRHPELLVTKGETFEEFVNTILFRYNSKKFKESLSIQNPAQLFIEQILFSNKPIIDYTSIHDKIFGLQDMPGIEELDTIIGRKTFVESYVQIVDDLSNLTLDINDVKTIFAFCLMNDPLLITSANNIIMSVKGHSQERIGQSACKMPEVRSLKLIHYSPAVVLRAYVRGPTNVPNADIDELARDLSHLEDFIQSTKLRENMRERIEINEKRHLGRDFKFEIKELTRFYQVCYDYIKSTEHKIKVFILPYKVFTSIEFCGALTGNLINDKLWYITHYLKNIVSTTHKAQISSSPELELQIADEALRLIAHFADTFLAPESRIQFLKKVIEEFTYKGIPVKHLYSKIKNSKLRVKFLGILLWLDDLTQNDLDKFDADKSDEKIIWNNWQVSRDMNTGPIDLMISGYSRQLRITGEDDKLIAAELQVTRLSEDLIYRHGQAMLNKPHGLKLEKMQPVTEMSKQLHYIVFQQRSRKRYFYSILPTQIIEDHNSRIESSRLNRDSKWVPVCPVAVSKLYQQGRPILSKVKNLNMQTHSLSRIQVNVDEYAITRRAHFQKMPFFEGPSIPSGGMDLSELMKSTSLLSLNYDNIKNASLLDMSRVFKCNGSENDQMAFEFLSDEILEQDVVEEIECNPIFSISYTKRGESNMTYKNAFHKALISECDKFEEAFDFLDMGFCSNENLSILEEIHWIISYLKTNQWSTELDNCIHMCMYRNGYDAEYHRFDIPSKFLKDPINRTVNWTEVIEFILLIEDFQTKIEPWSSMKSHFCSKAHSVALECMKSEKRSLAEFVDKSKKTGKSKFDF*", "nuc": "ACTCCTATTTCGAAACAAACAAAAACAATCTCAAAATGTCGCAACTGTTACTCAACCAATATCGAAATAGGATATTGCACTGCCGTGAACCTGAAATAGCAAAGGATATATGGCGTGATCTATTGAATGATCGACACAACTACTTTTCTCGAGAATTTTGCAGAGCTGCAAACCTTGAGTATAGAAATGATGTTCCTGCTGAGGATATTTGTGCTGAAGTCCTCGATGGTTACAAAGCAAGGAAAGTGCGCTTTTGCACACCTGATAATTACTTACTACACGACGGGAAAATGTATATAATAGATTTCAAAGTGTCTGTGGACGATCGGTCTTCCAGAATTACAAGAGAGAAATACAATGAAATTTTTGGAGAAGTGTTCAACCCAGAAGGTGTGGACTTTGAAATCGTTATTATCAGGTTGGATCCTTCAAATATGGCTATACATGTTGACTCTCGAGATTTCATGAATACAATCGGACCAATCACGCTAAACATTAGTATGCAATGGTTTTTTGATATGAAAGACTTCTTATTTGGCAAATTCCGGGATGATGATAAATTCCATGCTATAATAAGTCAAGGAGAATTCACAATGACATTGCCATGGACCGAAGAAGATACTCCAGAATTGCTTACTCATCCTATATACAATGAGTTCATGAATTCAATGCCAGAGTCAGAACAGGCCCTGTTCAAAGAAGCATTGGAATTCAAATCATTCGGAGCAGAAAAATGGAATATTTTCTTAAAGGGAGTGATGTCTAAGTATGGTGAATATTATAAAGAATTTACCAAAGGACATGCCCAATCCATATTCTTGGCAACAGGGGACTACCCCAAACCAGATAAGGACCAAATTTCAGCTGGCTGGCGAGAGATGGTAAGTAGAGTGAGCTCTGAACGTGACATGTCAAATGACATAAATCAGGAAAAACCAAGCATACATTTTATATGGGCACAAAATGACTCAAGTAGCAATAATAACATACAGAAATTAATCAAACTATCCAAATCATTGCAAGCCATGAGTGGAACAGGAAGCTATGTAAGTGCTTTTAAATCATTAGGAAGATTGATGGATATATCATCAGACATCAAAAAGTATGAGTCGTTCTGCGGAAAATTAAAATCTTTGGCAAGGTCTAGCGTAAAGAAACTCGACAGGAAAATAGAACCGGTACAAATTGGAACAGCAACTGTCTTATGGGAGCAACAATTTAAATTAGATACGGATGTCATAAAAAGAGAGGACAGAATACATTTAATGAAAGATTATTTCGGAATTGGTAAACACAAGTCTTTTTCAAAAAAGCTAAACAATGACATAAATACCGATAAGCCTAAAATATTGAATTTTGACAATGACGATATAGTTAGGAAATGCAAAGATAAATATAACCAAGTCACACATAACTTGTCTCAAGTTAATGAATTAGACAAGATTGGAAATTATCTAGAGCATTTTTCAGCTAAAATTAGTGCCTGCAGTGTAGAAATGTGGGACTTTATATATAATACGACTAAAACCAAGTACTGGCAATGCATCAACGACTACTCTACCCTAATGAAAAACATGCTAGCTGTTTCCCAATATAATAGGCACAATACCTTTAGGATTGTCTCGTGTGCGAATAACAATGTATTTGGCCTAGTGATGCCAAGCTCAGACATAAAAACAAAAAAAGCAACATTAGTCTATGCAATAATAGCTCTCCACAATGAGGAGACAGAGATAGCAGAACTTGGTTCACTCTATTCCACTTTCAAGACAACAACAGGCTATATTTCAATATCAAAAGCTTTTAGGCTAGATAAAGAAAGGTGCCAGCGCATAGTGTCCTCTCCAGGCTTATTTCTTATGACAAGCTGTCTATTATTCAATGGTAATAAGAGTCTAGAGTTTGATAAGTTACTAGGCTTTTCATTTTTTACATCAATATCGATTACAAAAGCTATGCTCTCTCTTACTGAGCCTTCACGCTATATGATCATGAATTCATTGGCAGTTTCTAGCCATGTAAAAGAGTATATATCTGAAAAATTTTCTCCTTATACAAAAACAGCATTTTCTGTAGTGATGACAGATTTGATTAAAAAAGGTTGCTATTCAGCATATGAACAGAGGAAAAAGGTCCAAATAAGGGATATAAAGTTAACAGACTACGATATAACACAGAAAGGGGTAGATTCCAAAAGAGATCTTAAATCCATTTGGTTCCCGGGAAAGGTAAATTTAAAAGAATACTTGAACCAGATTTATTTACCATTTTATTTTAATTCCAAAGGATTGCATGAAAAGCATCATGTTTTAATAGATTTGGCTAAAACAGTGCTAGAAATCGAAAAAGAGCAAAGAGAATCATTACCTGAGCCATGGTCAGAGATACCTGCTAAGCAGACTGTCAACTTAAATATTTTGATTTACTCAATTGCAAGGAATTTGAACTTAGATACTTCAAGACATAATTTTGTGAGGAGCCGGGTGGAAAATGCAAATAACTTTAACAGATCTATAACAACAATATCCACCTTTACCAGCTCGAAATCATGCATTAAAATTGGTGATTTTGAGGAGGAGAAAAAGAAGAAAACTAAAAATGATGCAAAGAAACTAGCAAAAGATATTTCTAAATTAACTATAGCCAACCCAGCATTCTTAGATGAAATCACAAATGAACATGAGATAAGACACTCAACTTATGAGGATTTGAAACAATCTATCCCAGATTACACAGACTATATGTCTGTAAAAGTTTTTGACAGACTATATGAGAAGATTACTACTAACGAAATAAGTGATAAAGAAACAGTCAAGTTGATTCTAGAGACTATGAAGAAGCATAAAATATTTTACTTCGGATTCTTCAACAAAGGACAAAAAACAGCTAAAGATAGAGAAATATTTTTAGGTGAATTCGAGGCAAAAATGTGCCTGTACCTTGTTGAAAGAATAGCCAAAGAGAGATGCAAATTAAACCCAGAAGAAATGATAAGCGAACCAGGCGACTCTAAGTTAAGAGTATTAGAAAAGCAATCAGAAGATGAAATTAGGTATATCAGCAACACAATAAAGACATTGGGAAATGCCATAGAAAACCTGCAATCCGGGTCTTTAAATTGGGCAGATATATGTGAAAGTAAGGCACGAGGGCTTAAAATAGAAATAAATGCTGATATGTCTAAATGGAGTGCCCAAGATGTACTTTTCAAGTATTTCTGGCTGATAGTACTTGATCCTATCTTATATCCTGCTGAGAGGAAGAGAATAATTTATTTTCTATGTAATTATATGCAAAAAAGGCTTATAATGCCTGATGAATTGCTCACTACAATATTGGACCAGAGGGTTCCTTATTCAAATGATATAATTGGGTTGATGACAAACAATTACAGATCCAACACAGTAGAAATAAAGCGCAACTGGCTTCAAGGCAATTTAAATTATACAAGTAGTTACTTGCACAGCTGTAGTATGTCTGTATATAAAGACATAATAAGGGAAGCAGCAACATTATTAGAAGGGGAAGCCCTTGTGAATTCAATGGTACATTCTGATGATAATCAAACATCCATATGTATGGTGCAAAACAAGTTGCCAGATGACAATGTAATTGAATTTTGCATCAAGATATTCGAGAAGATATGTTTAACTTTTGGAAATCAGGCAAACATGAAAAAGACATACCTAACCAACTTCATCAAGGAATTTGTTTCTTTATTTAATATACACGGGGAGCCATTCTCTATATACGGGAGGTTTTTGCTTACAGCAGTAGGGGACTGTGCCTATCTGGGGCCTTATGAAGATTTAGCAAGTAGGCTATCTGCAACACAAACTGCTATAAAGCATGGCTGCCCACCATCACTGGCATGGGTATCCATTGCTTTGAATCACTGGATAACTCACACCACGTATAATATGTTACCTGGCCAAAATAATGACCCATTACCATTCTTCCCTACCAACAATAGAAATGAAATACCAGTGGAGATGTGTGGAATACTAGAAAGTGACTTATCAACAATTGCACTAACCGGTTTAGAAGCGGGAAATGTCACGTTTCTAACAAATATAGCAAGAAAACTATCATCTCCAATCTTGCAAAGAGAAAGTATCCAAGACCAATACAATTCTATAGAAAAATGGGACCTAAGTAGGTTATCGCAGATTGACATTCTGAGGCTTAAAATGCTTAGGTACATATCTCTTGATAGTTCGGTCACATCTGATGACGGTATGGGGGAGACCAGTGAAATGAGGTCGCGATCGCTTTTAACACCTCGTAAATTCACAACGAGTGGGTCACTCAATAGACTTAAATCGTATAAAGATTTTCAAAATATAATAACAGATGAGGATAAGACAAACGAGCTATTTGAGAATTTCATTAGGCATCCAGAGTTATTGGTCACAAAAGGCGAAACATTTGAAGAATTTGTCAATACAATATTATTTAGGTATAATTCAAAGAAATTCAAAGAATCTCTGTCAATACAAAATCCAGCACAACTCTTTATTGAGCAAATATTATTTTCCAACAAACCAATAATTGACTACACTAGCATACATGATAAGATTTTTGGATTGCAAGATATGCCAGGAATCGAAGAACTAGATACAATCATAGGCCGCAAAACATTTGTTGAAAGTTATGTCCAGATTGTAGATGATTTAAGCAACTTAACACTGGATATTAATGATGTCAAGACTATATTCGCCTTCTGTCTCATGAATGATCCACTACTAATTACATCCGCTAATAACATAATAATGTCTGTTAAAGGGCATAGCCAAGAAAGAATAGGACAATCAGCATGCAAAATGCCAGAGGTCAGGAGTCTGAAGCTTATACATTATTCACCAGCAGTTGTTTTGAGAGCCTATGTGAGAGGGCCAACAAATGTGCCAAATGCAGATATAGACGAGCTTGCGAGGGATCTATCTCATCTGGAAGATTTCATACAAAGCACAAAACTCAGAGAGAATATGAGAGAGAGAATAGAAATAAATGAGAAACGGCATTTAGGAAGAGATTTCAAGTTTGAAATCAAAGAATTGACTAGATTTTACCAAGTGTGTTATGATTATATAAAATCTACAGAACATAAAATTAAGGTATTCATATTGCCATACAAAGTTTTCACATCAATTGAATTCTGTGGCGCACTGACAGGGAACTTAATAAATGACAAATTGTGGTATATAACACATTACTTAAAAAATATAGTGTCTACTACACACAAGGCACAAATTTCGTCCTCACCTGAATTGGAATTGCAAATAGCTGATGAAGCACTGAGGCTAATAGCACATTTTGCCGATACTTTCTTGGCACCTGAATCAAGAATTCAATTTCTGAAAAAGGTTATCGAAGAATTCACATACAAAGGGATACCTGTAAAACATTTATATTCCAAAATAAAGAATTCCAAGTTGAGGGTCAAATTCTTAGGGATCCTTTTGTGGTTGGATGACCTAACACAAAATGATTTGGATAAGTTTGATGCAGATAAATCAGACGAAAAGATTATATGGAATAACTGGCAAGTATCAAGAGATATGAACACCGGACCAATAGATTTAATGATAAGTGGCTATTCCAGGCAACTGCGGATCACAGGGGAAGATGATAAATTGATTGCTGCTGAATTGCAAGTCACTAGATTGTCAGAAGATTTGATTTACAGACACGGCCAGGCAATGTTAAATAAACCGCACGGATTGAAGCTTGAAAAGATGCAGCCTGTAACTGAGATGTCTAAACAACTACATTATATCGTTTTCCAGCAGAGGTCAAGAAAGCGGTATTTCTATTCTATATTGCCCACCCAAATAATTGAAGATCATAATTCTAGAATCGAATCATCTAGGTTAAACAGAGATTCAAAATGGGTTCCTGTGTGTCCTGTTGCAGTATCAAAACTCTATCAGCAAGGACGACCTATACTTTCCAAGGTTAAGAATCTGAATATGCAGACTCATTCACTTTCTAGAATACAGGTTAATGTAGATGAATATGCCATTACAAGAAGAGCGCATTTCCAGAAGATGCCTTTCTTTGAAGGACCATCCATCCCTTCTGGTGGCATGGATCTATCAGAGTTAATGAAATCCACATCCTTATTGAGCTTAAATTATGACAATATAAAAAATGCTTCTTTATTGGATATGTCTAGAGTATTCAAGTGCAATGGCAGTGAAAATGACCAAATGGCTTTTGAGTTCCTGTCAGATGAAATTCTAGAGCAAGACGTAGTTGAAGAAATAGAATGCAACCCTATATTTTCTATCAGTTATACAAAAAGAGGAGAATCCAATATGACTTATAAAAATGCTTTCCACAAAGCTTTAATCTCAGAATGTGACAAATTTGAAGAAGCATTCGACTTTCTTGACATGGGGTTTTGCTCGAACGAGAACCTTAGTATTTTAGAGGAAATACATTGGATTATCAGTTATTTGAAGACGAATCAGTGGTCCACAGAACTAGACAATTGTATTCATATGTGTATGTATAGGAATGGGTATGATGCAGAGTATCATAGATTTGATATACCTTCTAAATTCCTCAAAGACCCGATAAACCGAACAGTAAATTGGACAGAGGTTATTGAGTTTATACTATTAATTGAAGATTTCCAAACAAAGATTGAGCCATGGTCGAGTATGAAGTCACATTTCTGTTCAAAAGCACACAGTGTAGCGTTAGAGTGCATGAAAAGCGAGAAAAGATCACTGGCAGAATTTGTAGACAAAAGTAAGAAAACTGGGAAATCCAAGTTTGATTTCTAAGGTATATGCATGTAAAAGTA" } -} \ No newline at end of file +} diff --git a/data_output/community/itps/orov/M/refseq/unreleased/dataset.zip b/data_output/community/itps/orov/M/refseq/unreleased/dataset.zip index 96e8862c0adb2a9ac39cc376bd3a716b4eabc947..e4ab17576f030e1687d619570aaa273554fd002f 100644 GIT binary patch delta 382 zcmezN%j&>ys|}LuTrtgaRxe{?U|7bsS(&|rQA&qP0SJ^*D+*GJGILY&N)mIFtQ1O$ zN>e9K=ZI?F%Gth^lM#rSwr}NRKJ$&MQ&C%Aat{}SZ}jv@ui^u9fO-b{CR zr{CVgXU()ue!9e7K1ExEx49TN84zFz{k3<2z$mDx)eCvW74@-4_oOis;B%`5RuEY1!}%u7!# zRhqg4~gq1C%Q%Dot%><7{W+ zWCUWS?QERP7r${a8ER{)?&e}p-M#(ce`X&>wwO`_gS5o$`iv~gSliFAvj8!OW&>h& zAm#vKP9Ww2Vs0Sj0b<_mXW02{woK>T!*>)ZK&Ic=!{^P^#y4GcFP}AUgaQLYacW^{ oYF=_`@pOZ|d}6W)ySW%R84zFzV=)8E^aXqQq}cZF<^zfY09S})&Hw-a diff --git a/data_output/community/itps/orov/M/refseq/unreleased/pathogen.json b/data_output/community/itps/orov/M/refseq/unreleased/pathogen.json index 15fcd8c5c..f62fc80a6 100644 --- a/data_output/community/itps/orov/M/refseq/unreleased/pathogen.json +++ b/data_output/community/itps/orov/M/refseq/unreleased/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/M/refseq", "reference accession": "NC_005775.1", - "reference name": "Oropouche virus, M segment" + "reference name": "Oropouche virus, M segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 31 - }, - { - "begin": 4294, - "end": 4385 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data_output/community/itps/orov/M/refseq/unreleased/tree.json b/data_output/community/itps/orov/M/refseq/unreleased/tree.json index 4cd145e70..63a469a64 100644 --- a/data_output/community/itps/orov/M/refseq/unreleased/tree.json +++ b/data_output/community/itps/orov/M/refseq/unreleased/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -81,7 +81,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 31 + }, + { + "begin": 4294, + "end": 4385 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -10183,4 +10197,4 @@ "M": "MANLIIISMVLGVAYGHPLSTSQIGDRCFAGGNLFKEMNLSVGLGEICVKDDISIVKSTTVFSKNKPALEATTKFYRSFIVKDWSECNPVLDKFGNFMVLSVDDNGHIIPKMYTCRAACDIRLNKDNAEIILSSTKLNHFEIVGTTSTSGWFKNTITNNLEHTCEHVTVNCGQKSVKFHACFRQHRGCIRFFKGTYMPYSMIEAMCVNIELIILTLYIFAAIIFALIITKSYVAYLLLPLFYPVTWFYGKVYKKINSCPNCLLASHPFTSCPKFCICGSRFSCTEALKVHRMGKDCLGYKSLSKARQMCKSKSWSFTAAILTGLILMEFISPIAGERMYKLEELADEFIKLTEQVNILEREMEVLKQSIIVMFAIILVLLLFENMIFNRLFRIFYRSCSMCGLIHYRPGLKIDLTKTNRCGSCICGFDEQQSSGFEYEIFLKDMHVQKESCKFSPRVNHFRNIKALLFALVICATIYTVYADEDCLSKDIKITYQELHNCIGPKIMGDTCVSKSELYSDLFSKNLVTEYDKKYFEPDTVNDQFNKIEFAQDAHRMILLERILYKTECEMLSLKKNSGPYNVAWRTYLKNHNIDLCSRHNYKMICQCINTHSMCNNTDIDYNKEIETYYKSNAAAYRADLNTIMDTLKTAFRGLTKVLIENYIEKDDSDALKALFSNITDSVQDNYQMIGILKFASKLLDINLGRSTRSAHHSIMTNEIPKSNPFTDYSYSNLNIKECMSPESLKCFKKRGSTPHTNHLLCKIDNKYKAFDWPEIETIQKGQKLCLGDSHCNLEFTAITADKIMSLTNCYKESFTAQPADMQAGIKKCSADEIGECTTLEDKTWPIIFCGGKYYYSDSKEHAKDGSINNYCLTNKCSEQRFPIHENWFKKCNWDKTHKEFSTMRQINYNDITSYRKAIESEIGTDLMTHHYKPTKNLPHVVPRYHSIDVQGTESTEGIINGFIQNTIPAISGLGVGYHLNFQSNQLFDIVIFVKKAVYKAQYQKAYTTGPSISINIEHNERCTGHCPEKIPAKEGWLTFSKEHTSSWGCEEYGCLAIDTGCLYGSCQDVIRPELDVYKKIGSEVSLIEICITLPHETYCNDMDILEPIIGDKLSASFQNTQTNQLPTLIAYKKGKIYTGQINDIGNTALQCGSIQVINGSTIGTGSPKFDYICHAMRRKDVIVRKCFNDNYQSCTRLEKRNDLIPYRKGDVIEVSKTGSNMGQMTFKIELGDINYKIFTKSIDLQMSGICAGCIDCAEGISCSINAEVPAETVCHCKTNCEDFINNIVFSPQIKNYNIKVHCKSKVEKITAHICGRDIDLQLTIKPYNQKIDLSQLDESNYIREEDLQCGTWLCKVQKEGIDIIFKGLFSGLGRYWTILIYSIIGVVIIVILVYILLPIGRLLKAFLIRHEIEYAMEQKIK*", "nuc": "AGTAGTGTGCTACCGGCAACAAACAGTGACAATGGCGAATTTAATAATTATTTCAATGGTTCTGGGCGTTGCCTATGGGCATCCGCTTTCAACAAGTCAAATTGGTGACCGCTGTTTTGCTGGTGGTAACCTCTTCAAGGAGATGAACTTGAGTGTAGGACTTGGCGAAATATGTGTTAAAGATGACATATCTATTGTTAAGAGTACTACTGTTTTTAGCAAGAATAAACCAGCTCTTGAGGCAACTACAAAATTTTATAGATCTTTTATTGTGAAAGATTGGTCTGAGTGCAATCCAGTGCTAGACAAATTTGGAAATTTTATGGTTTTAAGTGTTGATGATAATGGCCATATAATACCTAAAATGTATACATGTAGAGCAGCATGTGATATTAGATTAAACAAAGATAATGCCGAAATAATATTATCGTCAACAAAACTCAACCACTTTGAAATTGTCGGGACAACTTCGACATCAGGCTGGTTCAAGAACACAATAACAAACAACTTAGAACATACATGCGAGCATGTAACCGTAAATTGTGGTCAGAAATCAGTAAAATTCCATGCATGCTTTAGACAACATAGGGGTTGTATAAGATTCTTTAAAGGAACATATATGCCATACTCAATGATTGAAGCAATGTGCGTTAACATAGAGCTAATAATTCTGACATTATATATCTTTGCTGCAATTATATTTGCATTAATTATAACAAAGAGTTATGTGGCATACTTGCTCCTGCCGTTATTTTATCCAGTGACGTGGTTTTACGGAAAGGTTTATAAAAAGATTAATTCTTGCCCAAATTGTCTACTTGCATCTCACCCTTTCACCAGCTGCCCTAAATTCTGTATATGCGGTTCTAGGTTTAGTTGCACAGAAGCTCTTAAGGTACATAGAATGGGAAAGGACTGCTTAGGTTATAAGTCTCTAAGCAAAGCTAGACAGATGTGTAAATCGAAAAGCTGGTCCTTCACAGCAGCTATATTAACTGGATTAATATTGATGGAATTCATCTCACCAATTGCAGGAGAGAGAATGTATAAGCTTGAGGAGCTGGCTGATGAGTTTATAAAGCTAACAGAGCAGGTAAATATTTTAGAAAGAGAAATGGAAGTCTTGAAGCAGTCAATAATTGTTATGTTTGCAATCATTTTGGTATTGTTGCTTTTTGAAAATATGATATTCAACCGGCTTTTCCGCATTTTTTATCGTTCTTGCTCCATGTGCGGCTTGATACATTATAGACCAGGACTCAAGATCGATTTAACCAAAACTAACAGATGTGGTAGTTGCATCTGTGGATTCGACGAGCAGCAATCATCTGGTTTTGAATATGAAATATTTCTAAAGGATATGCATGTCCAGAAAGAATCATGCAAATTTAGTCCAAGAGTAAACCACTTTAGGAATATTAAAGCTTTATTATTTGCACTTGTAATCTGTGCTACTATATATACAGTTTATGCAGATGAAGATTGCTTATCTAAAGATATTAAAATAACATATCAAGAGTTGCACAATTGCATAGGTCCAAAGATAATGGGCGATACTTGTGTATCAAAGAGTGAATTGTATTCTGATTTATTCTCAAAAAATCTAGTCACAGAATATGATAAAAAATATTTTGAACCCGATACTGTAAATGATCAATTCAACAAGATAGAGTTTGCCCAAGATGCACATAGAATGATACTATTAGAAAGAATACTTTACAAGACAGAATGTGAAATGCTAAGCTTAAAAAAGAACAGTGGACCTTATAATGTTGCCTGGCGCACATATTTAAAAAATCATAATATAGACTTATGCAGTAGGCACAACTATAAAATGATATGTCAGTGTATTAATACACACTCTATGTGTAATAATACAGATATAGATTATAACAAAGAGATCGAAACATATTATAAAAGCAATGCTGCAGCCTATAGAGCTGACCTGAACACCATAATGGACACATTAAAAACAGCATTCAGAGGGCTTACAAAGGTCCTAATTGAAAATTATATAGAAAAAGATGACTCTGATGCTCTTAAGGCCTTATTTAGTAATATTACTGATTCTGTTCAGGACAATTATCAGATGATTGGAATATTGAAATTTGCCAGTAAGCTATTAGATATTAACCTTGGTAGATCCACCCGCTCAGCTCATCATTCTATAATGACAAACGAAATTCCCAAATCTAATCCTTTTACTGATTACAGTTATTCTAATCTGAATATAAAGGAGTGCATGTCACCAGAGAGCTTGAAATGTTTTAAGAAGAGAGGCAGTACACCGCATACAAACCACCTGCTTTGCAAGATAGACAACAAATATAAAGCATTTGACTGGCCAGAGATAGAAACAATTCAAAAAGGTCAAAAATTGTGCCTTGGTGACAGTCATTGCAACTTGGAATTTACAGCCATAACTGCAGACAAGATTATGTCATTAACTAACTGTTATAAAGAATCTTTCACTGCGCAACCAGCAGATATGCAGGCTGGAATTAAAAAATGCTCAGCTGATGAAATTGGAGAATGTACAACACTTGAAGACAAGACATGGCCAATTATATTCTGTGGTGGCAAATATTACTACTCTGATAGCAAGGAGCATGCCAAGGACGGTTCTATCAACAATTATTGTTTAACCAACAAATGCTCTGAACAACGTTTCCCAATACATGAAAATTGGTTCAAAAAATGTAATTGGGACAAGACCCACAAAGAATTTAGCACTATGAGACAAATAAACTATAATGATATAACTTCTTATAGAAAGGCAATAGAATCTGAGATAGGAACAGATTTGATGACACACCATTATAAGCCCACAAAGAACCTTCCACATGTTGTACCAAGGTATCATAGTATAGATGTACAAGGTACAGAATCAACAGAGGGTATTATCAATGGTTTCATACAAAATACAATACCTGCTATTAGTGGTCTAGGTGTCGGTTATCATCTGAATTTTCAAAGCAATCAGTTATTTGACATAGTTATTTTTGTGAAAAAAGCTGTATATAAAGCACAGTACCAGAAAGCATACACCACAGGTCCTAGCATATCCATAAATATTGAACACAACGAAAGATGCACAGGCCACTGCCCCGAAAAGATTCCTGCAAAAGAAGGTTGGTTAACATTTTCTAAAGAGCATACTAGTTCTTGGGGATGTGAAGAATATGGCTGTCTTGCTATAGATACAGGCTGTCTATATGGCTCTTGTCAAGATGTCATACGCCCAGAATTAGATGTTTATAAGAAGATTGGCAGTGAGGTATCACTGATAGAAATATGTATAACTTTGCCTCATGAAACTTATTGCAATGATATGGACATATTAGAACCGATTATAGGAGATAAATTAAGTGCATCCTTTCAGAATACACAGACTAATCAACTTCCGACCCTTATAGCTTATAAAAAAGGGAAGATATACACAGGTCAAATCAACGATATTGGAAACACAGCATTGCAGTGCGGCTCAATCCAAGTAATCAATGGATCAACTATCGGAACTGGCAGCCCCAAATTTGATTATATATGCCATGCTATGAGAAGGAAAGATGTTATTGTAAGGAAGTGTTTCAATGACAATTATCAGTCGTGCACTAGGCTAGAAAAACGGAACGACTTGATCCCTTATAGAAAAGGCGATGTCATCGAAGTATCAAAAACAGGATCGAACATGGGCCAAATGACATTTAAAATAGAACTAGGTGATATCAACTATAAAATATTTACTAAATCAATAGATCTTCAAATGTCTGGCATTTGTGCTGGGTGCATTGACTGTGCTGAAGGCATTTCATGCTCTATAAATGCTGAAGTGCCAGCCGAAACAGTCTGCCATTGCAAAACAAACTGTGAAGATTTTATAAACAATATAGTGTTTTCACCGCAAATCAAGAATTACAATATAAAAGTCCACTGTAAATCTAAAGTTGAAAAAATAACAGCACATATCTGTGGGAGAGACATTGATTTACAGTTAACAATTAAGCCATACAATCAGAAGATAGACTTGTCGCAGTTAGATGAATCAAATTACATAAGGGAAGAGGACCTCCAGTGTGGAACATGGTTATGTAAAGTGCAAAAAGAGGGGATTGATATTATATTTAAAGGATTATTTTCAGGCTTAGGGAGATATTGGACCATATTAATTTATTCAATTATAGGTGTGGTAATAATTGTGATATTGGTTTATATCCTGTTGCCCATAGGTCGGCTTTTAAAAGCATTCCTAATCAGACATGAAATAGAATATGCCATGGAGCAGAAAATCAAGTAGATTTGGCTAAAAAGGGTAGGCAGGTCTAAAATCAGGTATAAATAAAATTCATATAAATAAAGTCAAAAATTGTTGTCGGTAGCACACTACT" } -} \ No newline at end of file +} diff --git a/data_output/community/itps/orov/M/tefe/unreleased/dataset.zip b/data_output/community/itps/orov/M/tefe/unreleased/dataset.zip index eeb10a2bf2e4ee3eefd6c45e1a5364957093430d..12f66801c9bc9c8066d40ccf5ca563ddfd1f05b9 100644 GIT binary patch delta 400 zcmccq-+p0(!-fy+T<%6I|7>AnVA#U8`4@W=Ba04~g2Lo_F0siqoKelQxY}oNF#<8u z_E}ua=f82y`nE!I(qC?dNq@H&GqQLwG9BKv{V)>?H=7?wpMru?YDGzEUU6oAUa^vu zLN!b8NktL_3K!%gCa316=9R?fCKhMM7bWJUr-JlFb4^!_W06o)N=i-7 z%mWG-KuibO00K&>c_~0qBZKJ|m{`?SVX91wER3-#G%+?eoUZtsUzxGC{Tv4i5VHa? z8xXStF$WNH0x=g5a|1CC5c2{t-}ZAH{6SwCxuz@p<3EZNP}AT49$J$i}6hP^-f=Ie<@c@>Wi3xq_U; zrA>@1j3H7$L5L0$V{=1@9v~SDl2l4bEhtJ&PAo|UnV6QCQ=AHP%tRj1$xWOh&96Dz zUvn}7G1K@ vTl3m0GB6aU7M7;wC8riopZK3&Oa|c!ZU#;U1X#it%{WCsnoZ#!KTr?=9cO7D diff --git a/data_output/community/itps/orov/M/tefe/unreleased/pathogen.json b/data_output/community/itps/orov/M/tefe/unreleased/pathogen.json index d585ec4dd..b9a486007 100644 --- a/data_output/community/itps/orov/M/tefe/unreleased/pathogen.json +++ b/data_output/community/itps/orov/M/tefe/unreleased/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/M/tefe", "reference accession": "PP154171.1", - "reference name": "Oropouche virus ILMD_TF29 (tefe), M segment" + "reference name": "Oropouche virus ILMD_TF29 (tefe), M segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 20 - }, - { - "begin": 4283, - "end": 4371 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data_output/community/itps/orov/M/tefe/unreleased/tree.json b/data_output/community/itps/orov/M/tefe/unreleased/tree.json index ed3bece58..d11421f61 100644 --- a/data_output/community/itps/orov/M/tefe/unreleased/tree.json +++ b/data_output/community/itps/orov/M/tefe/unreleased/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -85,7 +85,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 20 + }, + { + "begin": 4283, + "end": 4371 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -10417,4 +10431,4 @@ "M": "MANLIIISMVLSVAYGHPLSTSQIGDRCFAGGNLFKEMNLSVGLGEICVKDDISIVKSTTVFSKNRPALEATTKFYRSFIVKDWSECNPVLDKFGNFMVLSVDDNGHIIPKMYTCRAACDIRLNKDNAEIILSSTKLNHFEIVGTTSTSGWFKNTITNNLEHTCEHVTVNCGQKSVKFHACFRQHRGCIRFFKGTYMPYSMIEAMCVNIELIILTLYIFAAIIFALIITKSYVAYLLLPLFYPVTWFYGKVYKKINSCPNCLLASHPFTSCPKICICGSRFSCTEALKVHRMGKDCLGYKSLSKARQMCKSKSWSFTAAILTGLILMEFISPIAGERMYKLEELADEFIKLTEQVNILEREMEVLKQSIIVMFAIILVLLLFENMIFNRLFSTFYRSCSMCGLIHYRPGLKVDLTKTNRCGSCICGFNEQQSSGFEYEIFLKDMHIQKESCKFSPRVNHFRNIKALLFALVICATIYTVYADEDCLSKDIKITYQELHNCIGPKIMGDTCVSKNELYSDLFSKNLVTEYDKKYFEPDTVNDQFNKIEFAQDAHRMILLERILYKTECEMLSLKKNSGPYNVAWRTYLKNHNIDLCSRHNYKMICQCINTHSMCKNTDIDYNKEIETYYKSNTAAYRADLNTIMDTLKTAFRGLTKVLIENYIEKDDSDALKALFSNITDSVQDNYQMIGILKFASKLLDINLGRSTRSARHSIMTNEIPKSNPFTDYSYSNVNIKECMSPESLKCFKKRDSTPHTNHLLCKIDSKYKAFDWPEIETIQKGQKLCLGDSHCNLEFTAITADKVMSLTNCYKESFTAQPADMQTGIKKCSADEIGECTTLEDKTWPIVFCGGKYYYSDSKEHAKDGSINNYCLTNKCSEQRFPIHENWFKKCNWDKTHKEFSTMRQINYNDITSYRKAIESEIGTDLMTHHYKPTKNLPHVVPRYHSIDVQGTESTEGIINGFIQNTIPAISGLGVGYHLNFKGNQLFDIVIFVKKAVYKAQYQKAYTTGPSISINIEHNERCTGHCPEKIPAKEGWLTFSKEHTSSWGCEEYGCLAIDTGCLYGSCQDVIRPELDVYKKIGSEASLIEICITLPHETYCNDMDILEPIIGDKLSASFQNTQTNQLPTLIAYKKGKIYTGQINDIGNTALQCGSIQVINGSTIGTGSPKFDYICHAMRRKDVIVRKCFNDNYQSCTRLEKRNDLIPYRKGDVIEVSKTGSNMGQMTFKIELGDINYKIFTKSIDLQMSGICAGCIDCAEGISCSINAEVSAETVCRCKTNCEDFINNIVFSPQIKNYNIKVHCKSKVEKIIAHICGRDIDLQLTVKPYNQKIDLSQLDESNYIREEDLQCGTWLCKVQKEGVDIIFKGLFSGLGRYWTILIYSIIGVVIIVILVYILLPIGRLLKAFLIRHEIEYAMEQKIK*", "nuc": "ACCAGCAACAAACAGTGACAATGGCGAATTTAATAATTATTTCAATGGTTCTGAGCGTTGCCTACGGGCATCCTCTTTCAACAAGTCAAATTGGTGACCGCTGTTTCGCTGGTGGTAACCTCTTCAAGGAGATGAACTTGAGTGTAGGACTTGGCGAAATATGTGTTAAAGATGACATATCTATTGTTAAAAGTACTACTGTTTTTAGTAAGAATAGACCAGCTCTTGAGGCAACCACAAAATTTTATAGATCTTTTATTGTGAAAGATTGGTCTGAATGCAATCCAGTGCTAGATAAATTTGGAAATTTTATGGTTTTAAGTGTTGATGATAATGGCCATATAATACCTAAAATGTACACATGTAGAGCAGCATGTGATATTAGATTAAACAAAGATAATGCTGAAATAATATTATCGTCAACAAAGCTCAACCACTTCGAAATTGTCGGAACAACTTCGACATCAGGCTGGTTCAAAAACACAATAACAAACAATTTGGAACACACATGCGAACATGTGACCGTAAATTGTGGTCAGAAATCAGTAAAATTCCATGCATGCTTTAGACAACATAGGGGTTGTATAAGATTCTTTAAAGGGACATATATGCCATACTCAATGATTGAAGCAATGTGTGTTAACATAGAGCTAATAATTCTGACATTATATATCTTTGCTGCAATTATATTTGCATTAATCATAACAAAGAGTTATGTGGCATACCTGCTCCTGCCGTTATTTTATCCAGTGACATGGTTTTACGGAAAGGTTTATAAAAAGATTAATTCCTGCCCAAATTGTCTACTTGCATCTCATCCTTTCACCAGCTGCCCTAAAATCTGTATATGCGGTTCTAGATTTAGTTGCACAGAAGCTCTTAAGGTGCATAGAATGGGTAAGGACTGTTTAGGTTATAAATCTCTAAGCAAAGCTAGACAGATGTGTAAATCGAAAAGCTGGTCCTTTACAGCAGCTATATTAACTGGATTAATATTGATGGAATTTATCTCACCAATTGCAGGAGAGAGAATGTATAAGCTTGAGGAGTTAGCTGATGAGTTTATAAAGCTAACAGAGCAGGTAAATATTTTAGAAAGAGAAATGGAAGTCTTGAAGCAATCAATAATTGTTATGTTTGCAATCATTTTGGTATTGTTGCTTTTTGAAAATATGATATTCAACCGACTTTTCAGCACTTTTTATCGTTCTTGCTCCATGTGTGGTTTGATACATTATAGACCAGGACTCAAGGTTGATTTAACCAAAACTAATAGATGCGGTAGTTGCATCTGTGGATTCAATGAGCAGCAATCATCTGGTTTTGAATATGAAATATTTCTAAAGGATATGCACATCCAGAAAGAATCATGCAAATTTAGTCCAAGAGTAAACCACTTTAGGAATATTAAAGCTTTATTATTTGCACTTGTAATCTGTGCTACTATATATACAGTTTATGCAGATGAAGATTGCTTGTCTAAAGACATTAAAATAACATATCAAGAGTTGCATAATTGCATAGGCCCAAAGATAATGGGCGACACTTGTGTATCAAAGAATGAATTGTATTCTGATTTATTCTCAAAAAATCTAGTCACAGAATATGATAAAAAATATTTTGAACCTGATACTGTAAATGATCAATTCAACAAAATAGAGTTTGCCCAAGATGCACATAGAATGATACTATTAGAAAGAATACTTTACAAGACAGAATGTGAAATGCTAAGCTTAAAAAAGAACAGTGGACCTTATAATGTTGCCTGGCGCACATATTTAAAAAATCATAATATAGACCTATGCAGTAGGCACAACTATAAAATGATATGTCAGTGTATTAATACGCACTCTATGTGTAAAAATACAGATATAGATTACAACAAAGAGATCGAAACATATTATAAAAGCAATACTGCAGCCTATAGAGCTGACCTGAACACCATAATGGACACATTAAAAACGGCATTCAGAGGGCTTACAAAGGTCCTAATTGAAAATTATATAGAAAAAGATGACTCTGATGCTCTTAAGGCTTTATTCAGTAATATTACTGATTCTGTCCAGGACAATTATCAGATGATTGGAATATTGAAATTTGCCAGTAAGCTATTAGATATTAACCTTGGTAGATCCACCCGCTCAGCTCGTCATTCTATAATGACAAACGAAATTCCCAAATCTAATCCTTTTACTGATTACAGTTATTCCAATGTGAACATAAAGGAGTGCATGTCACCAGAGAGCTTGAAATGTTTTAAGAAGAGAGACAGTACACCGCATACAAACCACCTGCTTTGCAAGATAGACAGCAAATATAAAGCATTTGACTGGCCAGAGATAGAAACAATTCAAAAAGGTCAAAAATTGTGTCTTGGTGACAGTCATTGCAACTTGGAATTTACAGCCATAACTGCAGATAAGGTTATGTCATTAACTAACTGTTATAAGGAATCTTTCACTGCGCAACCAGCAGATATGCAGACTGGAATTAAAAAATGCTCAGCTGATGAAATTGGAGAATGTACAACACTTGAAGACAAGACATGGCCGATCGTATTCTGTGGTGGCAAATATTACTACTCTGATAGCAAAGAGCATGCCAAGGACGGTTCTATCAACAACTATTGTTTAACCAACAAATGCTCTGAACAACGTTTTCCAATACATGAAAATTGGTTTAAAAAATGTAATTGGGACAAAACCCACAAAGAATTTAGTACTATGAGACAGATAAACTATAATGATATAACTTCTTATAGAAAAGCAATAGAATCTGAGATAGGAACAGATTTGATGACACACCATTATAAGCCCACAAAGAACCTTCCGCATGTTGTGCCAAGGTATCATAGTATAGATGTACAAGGTACAGAATCAACAGAGGGTATTATCAATGGTTTCATACAAAATACAATACCTGCTATTAGTGGTCTAGGTGTCGGTTATCATCTGAATTTCAAAGGCAATCAGTTATTTGACATAGTTATTTTTGTGAAAAAGGCTGTATATAAAGCACAGTACCAGAAAGCATACACCACAGGTCCCAGTATATCCATAAATATTGAACACAATGAAAGATGCACAGGCCACTGCCCCGAAAAGATTCCTGCAAAAGAAGGTTGGCTAACATTTTCTAAAGAACATACTAGTTCTTGGGGATGTGAAGAATACGGCTGTCTTGCTATAGATACAGGCTGTCTATATGGTTCTTGTCAAGATGTCATACGCCCAGAATTAGATGTTTATAAGAAGATTGGTAGTGAAGCATCACTGATAGAAATATGCATAACTTTGCCTCATGAAACTTATTGCAATGATATGGATATATTAGAACCGATTATAGGTGATAAATTAAGTGCATCCTTTCAGAATACGCAGACTAACCAACTTCCGACCCTTATAGCTTATAAAAAAGGGAAAATATACACAGGTCAAATCAATGATATTGGAAATACAGCATTGCAGTGCGGCTCGATCCAAGTAATTAATGGGTCAACTATCGGAACTGGCAGCCCCAAATTCGATTATATATGCCATGCTATGAGAAGGAAAGATGTTATTGTAAGGAAGTGTTTCAATGACAATTATCAGTCATGCACTAGGTTAGAAAAACGAAATGACTTGATCCCTTATAGAAAAGGCGATGTCATTGAAGTATCAAAAACAGGATCAAACATGGGCCAAATGACATTTAAAATAGAACTAGGTGATATCAACTATAAAATATTCACTAAATCAATAGATCTTCAAATGTCTGGCATTTGTGCTGGGTGCATTGACTGTGCTGAAGGTATTTCATGCTCTATAAATGCTGAAGTGTCGGCCGAAACAGTCTGCCGTTGTAAAACAAACTGTGAAGATTTTATAAATAATATAGTGTTTTCACCACAAATCAAGAATTACAATATTAAAGTCCACTGTAAATCTAAAGTTGAAAAGATAATAGCACATATCTGTGGGAGAGACATCGATTTACAATTAACTGTTAAACCATACAATCAGAAGATAGATTTGTCGCAGTTAGATGAATCAAATTATATAAGGGAAGAGGATCTCCAGTGCGGGACATGGTTATGTAAAGTGCAAAAAGAGGGGGTTGATATTATATTCAAAGGATTATTTTCAGGCTTAGGGAGATACTGGACCATATTGATTTATTCAATTATAGGTGTGGTAATAATTGTGATATTAGTTTATATCCTGTTGCCCATAGGTCGGCTTTTAAAAGCATTCCTAATCAGACATGAAATAGAATATGCCATGGAGCAAAAAATCAAGTAGATTTAGCTAAAAAGGGTAGGCAGGCCTAAGATCAGGTATAAATAAAATCCATATAAATAAAGTCAAAAATTGTTGTTGGTAGCACACT" } -} \ No newline at end of file +} diff --git a/data_output/community/itps/orov/S/refseq/unreleased/dataset.zip b/data_output/community/itps/orov/S/refseq/unreleased/dataset.zip index 9abd647bdf8e02c4182078ea53d05816e51fcebd..2a292a58d89c0b41006c30f5e0c79135d7effa4c 100644 GIT binary patch delta 339 zcmdn;RP^6d(G5R1xFlNlty{{*z_65UGZSYCqk;~X0uU&rRurTbW#*>ll_cgUSt*nh zm8JqEYIV3Kf8>{(JeAA3c@p>bN!*O5yt(Wbu6C)CVqvI~+MX89=)=f#c-QtF5sZSY zo^Z2DQuB&4^Ye;G3UzC`ao?1M8 z-+D&5$zQnyCvl5Re-^_iJpJ58M*hhv+`^L$xkaa6O=J|9o|nVQ$5`8bGL{jDnShuX zh*`FujAbYoD2xCgmGCI iBST41YN}pVaeiKaH!Co}7#P@ra3LcDgL@$>kOu(rP-UI~ delta 323 zcmezORCLQz(G5R1xE}FWPxEDGVDM$%%*0v3IC%nBlw3hhVsdJ3YF>$NVsUm*VqSV` zv67WSG?xMpRC7(Qjb)UGQ%cQC0ScO!fJJL{ppqaZ3JOX|sp*+{KxuOm1BeVz45Go@ z6siNLAr>U3l#*Idl$xAak_s{}EitD!RflV`Jg=yTQffs(YEdT0A&EIaxssyN)aIvL z+n;hVp7-V|J1oAdLz0D|Lvs7RFh(CnwwO`_gS5o$JQ0k7tnET^j6lo;#LPgS z)kJu@dm-ylBp*)~D`NF#N)ni!T*PY4cx?LoB330Cgt;sXoD2xCgwZd2`rRT{X|}%w HtUzG^!aZ3C diff --git a/data_output/community/itps/orov/S/refseq/unreleased/pathogen.json b/data_output/community/itps/orov/S/refseq/unreleased/pathogen.json index cdc00123c..1509eed91 100644 --- a/data_output/community/itps/orov/S/refseq/unreleased/pathogen.json +++ b/data_output/community/itps/orov/S/refseq/unreleased/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/S/refseq", "reference accession": "NC_005777.1", - "reference name": "Oropouche virus, S segment" + "reference name": "Oropouche virus, S segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 44 - }, - { - "begin": 740, - "end": 754 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data_output/community/itps/orov/S/refseq/unreleased/tree.json b/data_output/community/itps/orov/S/refseq/unreleased/tree.json index cff18d293..48a901322 100644 --- a/data_output/community/itps/orov/S/refseq/unreleased/tree.json +++ b/data_output/community/itps/orov/S/refseq/unreleased/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -76,7 +76,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 44 + }, + { + "begin": 740, + "end": 754 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -3770,4 +3784,4 @@ "NSs": "MYHNGLHLHLIRRQHMWHLKLDTDKCSMLVLLESSSSTKRRPKMSYVRHRGPWLTLLLVGSNLQWLITISHSSSRIQCRTTVLPCTVCQDT*", "nuc": "AGTAGTGTGCTCCACAATTCAAAACATAAAAAGAAATTCCAATAATGTCAGAGTTCATTTTCAACGATGTACCACAACGGACTACATCTACATTTGATCCGGAGGCAGCATATGTGGCATTTGAAGCTAGATACGGACAAGTGCTCAATGCTGGTGTTGTTAGAGTCTTCTTCCTCAACCAAAAGAAGGCCAAAGATGTCTTACGTAAGACATCGAGGCCCATGGTTGACCTTACTTTTGGTGGGGTCCAATTTGCAATGGTTAATAACCATTTCCCACAGTTCCAGTCGAATCCAGTGCCGGACAACGGTCTTACCCTGCACCGTCTGTCAGGATACCTAGCGCGCTGGGCCTTTACCCAGATGCGATCACCAATTAAGCAAGCTGAGTTCAGAGCCACTGTAGTAGTGCCTTTGGCTGAGGTAAAGGGCTGTACTTGGAATGATGGTGACGCAATGTACCTGGGGTTTGCTGCTGGTGCTGAGATGTTCCTGCAAACATTCACTTTCTTCCCTTTGGTGATTGAGATGCATAGGGTTCTCAAGGATGGCATGGATGTCAACTTTATGAAGAAAGTCCTCCGGCAGAGGTATGGTCAAAAGACTGCCGAGCAATGGATGCGTGAAGAAATAGTTGCTGTAAGAGCAGCTTTTGAAGCTGTAGGCACTCTGGCCTGGGCCAGAACTGGATTCTCCCCAGCAGCAAGAGACTTCTTGCGCCAATTCGGAATTGACATATAGTGGAGCACACTACT" } -} \ No newline at end of file +} diff --git a/data_output/community/itps/orov/S/tefe/unreleased/dataset.zip b/data_output/community/itps/orov/S/tefe/unreleased/dataset.zip index 499b65b9d9fbbcbc6cf6b59b5b88e68b62be9072..b96c6dbe4afa1c0f4d8e1589c550d3d17bcf41d1 100644 GIT binary patch delta 419 zcmZqOV{v|u#Rho}uDB;Aahur~7&fzQ*5qhnl+xi+00O1dih|Ul%-qzxlEfS(D}|Dx z($vYTIis47b8SD)#W>H0E9XvV*`cF642OUrLEY6NEO3X`71?h{PJ~4w)N+BsV zJu?r;HGr56av=yPrRJpoMNN#SPsn4Gm_8?ikzX06)ZEw-t71zNlj#q$8Rgi(E~;%W zh-U<1CLm@8Viq7~1!6WJW(Q&pAm#*OE+FOxVxH{<@x1r;Fmg@zli@px6nN8RW%<0B z-t$e*lI62zRG+>~mQTqR5k@==oD2xCgmHZsBST41YN}pVaeiKaH!Cm#7#P@ra3LcD K!weZdAP)ew@p(7^ delta 354 zcmX@V$D(zQ#Rho}E~is=lcU)g7^2xXYjQL(vT-RW)ar0euH%!O{Djlmw;(4mIW;#m zuf#X8I6EjYFFmzb$x0y_s7gVh8cZrEC?%z)XXXKg4Rl~4sd*_tzKJoI4>S*=e0p{~ zqm-@^MAFj41R@J0V?ipEQc??wQj-%)QbBst5_5`EfezWvBRY8_r%1CD*LEo`#>GBd z=I_!qFC5`vxNv0q@i0a&Mvj!8UO$Q diff --git a/data_output/community/itps/orov/S/tefe/unreleased/pathogen.json b/data_output/community/itps/orov/S/tefe/unreleased/pathogen.json index 11904be9b..6621cd096 100644 --- a/data_output/community/itps/orov/S/tefe/unreleased/pathogen.json +++ b/data_output/community/itps/orov/S/tefe/unreleased/pathogen.json @@ -6,25 +6,13 @@ "attributes": { "name": "orov/S/tefe", "reference accession": "PP154170.1", - "reference name": "Oropouche virus ILMD_TF29 (tefe), S segment" + "reference name": "Oropouche virus ILMD_TF29 (tefe), S segment", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "placementMaskRanges": [ - { - "begin": 0, - "end": 43 - }, - { - "begin": 739, - "end": 944 - } - ], - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", diff --git a/data_output/community/itps/orov/S/tefe/unreleased/tree.json b/data_output/community/itps/orov/S/tefe/unreleased/tree.json index 88f12f2c5..3936b5632 100644 --- a/data_output/community/itps/orov/S/tefe/unreleased/tree.json +++ b/data_output/community/itps/orov/S/tefe/unreleased/tree.json @@ -11,7 +11,7 @@ ], "maintainers": [ { - "name": "Instituto Todos pela Sa\u00fade", + "name": "Instituto Todos pela Saúde", "url": "https://www.itps.org.br/" } ], @@ -92,7 +92,21 @@ "map", "entropy", "frequencies" - ] + ], + "extensions": { + "nextclade": { + "placement_mask_ranges": [ + { + "begin": 0, + "end": 43 + }, + { + "begin": 739, + "end": 944 + } + ] + } + } }, "tree": { "name": "NODE_0000000", @@ -5869,4 +5883,4 @@ "NSs": "MYHNGLHLHLIRRQHMWHLKLDTDKCSMLVLLESSSSTKRRPKMSYVRHRGPWLTLLLVGSNLQWLITISHNSSRIQCRTTVLPCTVCQDT*", "nuc": "GTAGTGTACTCCACAATTCAAAACATAAAAAGAAATTCCAATAATGTCAGAGTTCATTTTCAACGATGTACCACAACGGACTACATCTACATTTGATCCGGAGGCAGCATATGTGGCATTTGAAGCTAGATACGGACAAGTGCTCAATGCTGGTGTTGTTAGAGTCTTCTTCCTCAACCAAAAGAAGGCCAAAGATGTCTTACGTAAGACATCGCGGCCCATGGTTGACCTTACTTTTGGTGGGGTCCAATTTGCAATGGTTAATAACCATTTCCCACAATTCCAGTCGAATCCAGTGCCGGACAACGGTCTTACCCTGCACCGTCTGTCAGGATACCTAGCTCGCTGGGCCTTCACCCAGATGCGATCACCTATTAAGCAAGCTGAGTTTAGGGCCACTGTGGTGGTGCCTTTGGCAGAGGTGAAGGGTTGTACTTGGAATGATGGTGACGCAATGTACCTGGGGTTTGCTGCCGGTGCTGAGATGTTTCTGCAAACATTTACTTTCTTCCCTCTGGTGATTGAGATGCATAGGGTCCTCAAGGACGGCATGGATGTCAACTTCATGAAGAAAGTCCTTCGGCAGAGGTATGGCCAGAAGACTGCTGAACAGTGGATGCGTGAAGAAATAGTTGCTGTAAGAGCAGCTTTTGAGGCTGTAGGCACTTTGGCCTGGGCCAGGACTGGATTCTCCCCAGCAGCAAGAGACTTCTTGCGCCAATTTGGAATTGACATATAGTGGAGTACAATAAACAAACAGAGTATAATATAAAATACAAAAAAAGAAATAAAATAACAAAAATACAAAAAAACTAAAAAATATATAAAATAAACAAAAAAAGTGCGAAAGCACAAAAAAGAACTGCAGCTGTAATATTATAAAGGGTTGGGTGGTTGGGGAAAGCTATGTCATTTTAGAAAACGTATTTTTGAATTGGGAGCAC" } -} \ No newline at end of file +} diff --git a/data_output/index.json b/data_output/index.json index 1525f3dc1..1224b88eb 100644 --- a/data_output/index.json +++ b/data_output/index.json @@ -2947,7 +2947,8 @@ "attributes": { "name": "Andesvirus (segment L)", "reference name": "Chile-9717869", - "reference accession": "NC_003468" + "reference accession": "NC_003468", + "experimental": true }, "files": { "reference": "reference.fasta", @@ -2993,7 +2994,8 @@ "attributes": { "name": "Andesvirus (segment M)", "reference name": "Chile-9717869", - "reference accession": "NC_003467" + "reference accession": "NC_003467", + "experimental": true }, "files": { "reference": "reference.fasta", @@ -3039,7 +3041,8 @@ "attributes": { "name": "Andesvirus (segment S)", "reference name": "Chile-9717869", - "reference accession": "NC_003466" + "reference accession": "NC_003466", + "experimental": true }, "files": { "reference": "reference.fasta", @@ -8852,7 +8855,8 @@ "attributes": { "name": "orov/L/refseq", "reference accession": "NC_005776.1", - "reference name": "Oropouche virus, L segment" + "reference name": "Oropouche virus, L segment", + "experimental": true }, "files": { "changelog": "CHANGELOG.md", @@ -8894,7 +8898,8 @@ "attributes": { "name": "orov/M/refseq", "reference accession": "NC_005775.1", - "reference name": "Oropouche virus, M segment" + "reference name": "Oropouche virus, M segment", + "experimental": true }, "files": { "changelog": "CHANGELOG.md", @@ -8936,7 +8941,8 @@ "attributes": { "name": "orov/M/tefe", "reference accession": "PP154171.1", - "reference name": "Oropouche virus ILMD_TF29 (tefe), M segment" + "reference name": "Oropouche virus ILMD_TF29 (tefe), M segment", + "experimental": true }, "files": { "changelog": "CHANGELOG.md", @@ -8978,7 +8984,8 @@ "attributes": { "name": "orov/L/tefe", "reference accession": "PP154172.1", - "reference name": "Oropouche virus ILMD_TF29 (tefe), L segment" + "reference name": "Oropouche virus ILMD_TF29 (tefe), L segment", + "experimental": true }, "files": { "changelog": "CHANGELOG.md", @@ -9020,7 +9027,8 @@ "attributes": { "name": "orov/S/tefe", "reference accession": "PP154170.1", - "reference name": "Oropouche virus ILMD_TF29 (tefe), S segment" + "reference name": "Oropouche virus ILMD_TF29 (tefe), S segment", + "experimental": true }, "files": { "changelog": "CHANGELOG.md", @@ -9062,7 +9070,8 @@ "attributes": { "name": "orov/S/refseq", "reference accession": "NC_005777.1", - "reference name": "Oropouche virus, S segment" + "reference name": "Oropouche virus, S segment", + "experimental": true }, "files": { "changelog": "CHANGELOG.md", diff --git a/data_output/nextstrain/orthohantavirus/andv/l/unreleased/dataset.zip b/data_output/nextstrain/orthohantavirus/andv/l/unreleased/dataset.zip index 276084415a2fb4b95b996716bf112dbcec6a8388..13d3eb2ad38794a1d5553db87453e3f8e7c0cfb8 100644 GIT binary patch delta 119 zcmezTPw4AEp$%I(IQMVA-{i^0z~H%gA4dq2oDP=)5GbWq6r>hq=BDPAB<3htDU=kI zrUE5uoAtQc^|%>`Y?W){)&;+hVjL8btYCDTnY-cI$V?Aafvl^aJO@CGXgOa5HoM* z;AZLjhEP6zJ|n9S>Q7+Gx?pH0_fVzp6T(8a(|Qk0simsOmf7vRkbG?syZ9S9dP LGBBKHU2N6kfl_KkL26NEZfaghVvdrPLP=3+ zDo~=fc?Wm<4sJ#uX4<}kn^|oGLi_aRyP16$?@Tw@!)(L2Zh9ez+BJRM9%dOf>D|l> G3=9CvJ0=kT delta 95 zcmccglkdV$z76)AoQ%snuGFzHFw|}K;0$46<5Ezl)!~}FfLpA27kB$EZbl$x+P;gM pS#1MC>GYSonSB^ Date: Tue, 12 May 2026 18:09:54 +0200 Subject: [PATCH 6/7] andv: update examples --- .../orthohantavirus/andv/m/sequences.fasta | 15 --------------- 1 file changed, 15 deletions(-) diff --git a/data/nextstrain/orthohantavirus/andv/m/sequences.fasta b/data/nextstrain/orthohantavirus/andv/m/sequences.fasta index 0965f65bc..d9c5231e4 100644 --- a/data/nextstrain/orthohantavirus/andv/m/sequences.fasta +++ b/data/nextstrain/orthohantavirus/andv/m/sequences.fasta @@ -387,21 +387,6 @@ TTCAGTGTTCTCTGCCCCAGGAGAGGACACAAGAAAACTGTTTAAGCATTAACCTCAAAT CCTACATTAGATTATATACATATATACATTTATACACTTCTTCATATTTAGCTGCACTAA GATATTAATAAACTCTAGTTATTGACTTTATAAGATTATTATGGAACTAACCCCACTTAA AAAAAACAAATACTTTACTCATATATAACTCCATATTCTCTTACCGAGGATTTTGT ->MN737480 -ATGGAGTGCCCACATACTGTGGGTCTCGGTCAAGGATATATCATTGGATCATCAGAATTA -GGGTTGATATCGATTGAGGCTGCATCTGATATAAAGCTTGAGAGTTCTTGTAATTTCGAC -CTCCACACAACATCCATGAATCAGAAGAGTTACACTCAAGTAGAATGGAGGAAAAAGAGT -GACACAACTGACACCACAAATGCTGCATCCACCACCTTTGAAGCACAGACTAAAACTATT -AATCTTAGGGGGACCTGCATTCTGGCACCTGAGCTTTATGACACACTAAAGAAAGTAAAG -AAGACAGTGCTGTGTTATGATCTAACTTGCAATCAAACACACTGCCAGCCAACTGTCTAC -TTAATTGCACCTGTATTGACATGTATGTCAATACGAAGCTGTATGGCTAGTGTATTTACA -AGCAGAATTCAGGTGATTTACGAAAAAACGCACTGTGTGACAGGCCAGTTAATAGAGGGC -CAGTGCTTCAATCCAGCTCACACATTAACATTGTCACAGCCTGCCCACACCTATGACACA -GTAACCCTCCCAGTCACTTGCTTTTTTACACCTAAGAAGTCAGAGCAGCTAAAAGTCATA -AAAACATTTGAGGGGATATTGACAAAGACAGGCTGTACAGAGAATGCACTGCAAGGTTAC -TATGTCTGTTTCCTAGGAAGTCACTCAGAACCTTTAATTGTCCCAAGTCTTGAAGACATA -AGGTCTGCTGAAGTTGTTAGTAGGATGATCGTACATCCTCGAGGAGAAGATCATGATGCT -ATACAGAATTCACAAAGTTAC >PV808468 GACTCCGCAAGAAGAAGCAAAAAATTAAAGAAGTGAGTTTAAAATGGAAGGGTGGTATCT GGTTGCTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCCAAAACCATTTATGAGCT From d0ba820ef02cf175e93eda698a3c1c893b36efef Mon Sep 17 00:00:00 2001 From: nextstrain-bot Date: Tue, 12 May 2026 16:11:29 +0000 Subject: [PATCH 7/7] chore: rebuild [skip ci] --- .../andv/m/unreleased/dataset.zip | Bin 328328 -> 327503 bytes .../andv/m/unreleased/sequences.fasta | 15 --------------- 2 files changed, 15 deletions(-) diff --git a/data_output/nextstrain/orthohantavirus/andv/m/unreleased/dataset.zip b/data_output/nextstrain/orthohantavirus/andv/m/unreleased/dataset.zip index bc0bc6ca7f1089f820a7783e3db7dccf6b68cf08..a73245b57b31dca19cae13f6694f49348eab6729 100644 GIT binary patch delta 97 zcmeBZ6*>P;c*8eYuBa{9c_En$3?Z4DN`LPiFL8Gl)TJOH0f9d7^t delta 804 zcmYk4KT8}z7{)i|w3sp`2ucK-l)-4=(hgHhrPWkoWvfNXOLav!5&{Oog7$uZ5YqS! zY{mKzzlB8#_4j-Cgxucl%)Wn~=Xsym>xb3vv)6y_-=?DvTW6;yU3Yr&ck}k(&EEca zcl`0wcFL{RTw5)r}B-?(If-qzq0$GDH650|O z?Q;U{wvr=uJCy>o@cemjnMN737480 -ATGGAGTGCCCACATACTGTGGGTCTCGGTCAAGGATATATCATTGGATCATCAGAATTA -GGGTTGATATCGATTGAGGCTGCATCTGATATAAAGCTTGAGAGTTCTTGTAATTTCGAC -CTCCACACAACATCCATGAATCAGAAGAGTTACACTCAAGTAGAATGGAGGAAAAAGAGT -GACACAACTGACACCACAAATGCTGCATCCACCACCTTTGAAGCACAGACTAAAACTATT -AATCTTAGGGGGACCTGCATTCTGGCACCTGAGCTTTATGACACACTAAAGAAAGTAAAG -AAGACAGTGCTGTGTTATGATCTAACTTGCAATCAAACACACTGCCAGCCAACTGTCTAC -TTAATTGCACCTGTATTGACATGTATGTCAATACGAAGCTGTATGGCTAGTGTATTTACA -AGCAGAATTCAGGTGATTTACGAAAAAACGCACTGTGTGACAGGCCAGTTAATAGAGGGC -CAGTGCTTCAATCCAGCTCACACATTAACATTGTCACAGCCTGCCCACACCTATGACACA -GTAACCCTCCCAGTCACTTGCTTTTTTACACCTAAGAAGTCAGAGCAGCTAAAAGTCATA -AAAACATTTGAGGGGATATTGACAAAGACAGGCTGTACAGAGAATGCACTGCAAGGTTAC -TATGTCTGTTTCCTAGGAAGTCACTCAGAACCTTTAATTGTCCCAAGTCTTGAAGACATA -AGGTCTGCTGAAGTTGTTAGTAGGATGATCGTACATCCTCGAGGAGAAGATCATGATGCT -ATACAGAATTCACAAAGTTAC >PV808468 GACTCCGCAAGAAGAAGCAAAAAATTAAAGAAGTGAGTTTAAAATGGAAGGGTGGTATCT GGTTGCTCTTGGAGTCTGCTATACGCTGACACTGGCAATGCCCAAAACCATTTATGAGCT