Use AUGUR_SEARCH_PATHS in resolve_config_path()#78
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| Returns the path for the first existing file found relative to directories | ||
| defined by the AUGUR_SEARCH_PATHS environment variable. |
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Reviewing this prompted me to catch up on how AUGUR_SEARCH_PATH works (hence nextstrain/augur#2027).
Small thing to note here that we should be wary to not use --search-paths in our workflows so that the workflow resolved paths do not differ from the augur subsample resolved paths.
Changes from "[shared] switch to AUGUR_SEARCH_PATHS" (nextstrain/ebola@f8e2abd) with some small improvements.
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Note
Based on nextstrain/augur#2026.
Description of proposed changes
Changes from "[shared] switch to AUGUR_SEARCH_PATHS" (nextstrain/ebola@f8e2abd) with some small improvements.
Related issue(s)
Follow-up to nextstrain/ebola#64 (comment)
Checklist
If adding a script, add an entry for it in the README.defaults_dir(avian-flu, mumps)