update reference genomes

Author: matthdsm

conf/igenomes.config

@@ -30,10 +30,10 @@ params {
         }
         "GRCm39" {
             // Genome reference
-            fai         = "${params.igenomes_base}/Mmusculus/GRCm39/seq/GRCm39.fa.fai"
-            fasta       = "${params.igenomes_base}/Mmusculus/GRCm39/seq/GRCm39.fa"
-            dict        = "${params.igenomes_base}/Mmusculus/GRCm39/seq/GRCm39.dict"
-            gtf         = "${params.igenomes_base}/Mmusculus/GRCm39/seq/GRCm39.gtf"
+            fai         = "${params.igenomes_base}/Mmusculus/GRCm39/seq/GCF_000001635.27_GRCm39_genomic.fna.fai"
+            fasta       = "${params.igenomes_base}/Mmusculus/GRCm39/seq/GCF_000001635.27_GRCm39_genomic.fna"
+            dict        = "${params.igenomes_base}/Mmusculus/GRCm39/seq/GCF_000001635.27_GRCm39_genomic.dict"
+            gtf         = "${params.igenomes_base}/Mmusculus/GRCm39/seq/GCF_000001635.27_GRCm39_genomic.gtf"
 
             // Aligner reference
             bowtie2     = "${params.igenomes_base}/Mmusculus/GRCm39/bowtie2"
@@ -46,10 +46,10 @@ params {
         }
         "GRCz11" {
             // Genome reference
-            fai         = "${params.igenomes_base}/Drerio/GRCz11/seq/GRCz11.fa.fai"
-            fasta       = "${params.igenomes_base}/Drerio/GRCz11/seq/GRCz11.fa"
-            dict        = "${params.igenomes_base}/Drerio/GRCz11/seq/GRCz11.dict"
-            gtf         = "${params.igenomes_base}/Drerio/GRCz11/seq/GRCz11.gtf"
+            fai         = "${params.igenomes_base}/Drerio/GRCz11/seq/GCF_000002035.6_GRCz11_genomic.fna.fai"
+            fasta       = "${params.igenomes_base}/Drerio/GRCz11/seq/GCF_000002035.6_GRCz11_genomic.fna"
+            dict        = "${params.igenomes_base}/Drerio/GRCz11/seq/GCF_000002035.6_GRCz11_genomic.dict"
+            gtf         = "${params.igenomes_base}/Drerio/GRCz11/seq/GCF_000002035.6_GRCz11_genomic.gtf"
 
             // Aligner reference
             bowtie2     = "${params.igenomes_base}/Drerio/GRCz11/bowtie2"