restore InterOp output

Author: matthdsm

main.nf

@@ -70,7 +70,7 @@ workflow {
     demultiplex_reports        = PREPROCESSING.out.demultiplex_reports.transpose()
     demultiplex_logs           = PREPROCESSING.out.demultiplex_logs.transpose()
     demultiplex_fastq          = PREPROCESSING.out.demultiplex_fastq.transpose()
-    demultiplex_interop        = PREPROCESSING.out.demultiplex_interop.transpose()
+    demultiplex_interop        = PREPROCESSING.out.demultiplex_interop.transpose(by: 1)
     falco_html                 = PREPROCESSING.out.falco_html
     falco_txt                  = PREPROCESSING.out.falco_txt
     fastp_json                 = PREPROCESSING.out.fastp_json
@@ -122,7 +122,9 @@ output {
         }
     }
     demultiplex_interop {
-        path "InterOp/"
+        path { _meta, bin ->
+            bin >> "Interop/${bin.name}"
+        }
     }
     demultiplex_fastq {
         path { meta, fastq ->

workflows/preprocessing.nf

@@ -419,9 +419,7 @@ workflow PREPROCESSING {
     demultiplex_logs           = BCLCONVERT.out.logs.map { meta, logs ->
         return [meta, files(logs.resolve("*"))]
     }
-    demultiplex_interop        = ch_illumina_flowcell.flowcell.map { meta, _samplesheet, flowcell ->
-        return [meta, files(flowcell.resolve("InterOp/*.bin"))]
-    }
+    demultiplex_interop        = BCLCONVERT.out.interop
     demultiplex_fastq          = ch_demultiplexed_fastq_with_sampleinfo.other
     falco_html                 = FALCO.out.html
     falco_txt                  = FALCO.out.txt