fastp: lower compression level

matthdsm · matthdsm · commit a5a2e831bf38 · 2024-09-20T12:32:48.000+02:00
diff --git a/conf/modules.config b/conf/modules.config
@@ -78,6 +78,7 @@ process {
             params.trim_tail    > 0 ? "--trim_tail1  ${params.trim_tail}" : "",
             params.adapter_R1       ? "--adapter_sequence ${params.adapter_R1}" : "",
             params.adapter_R2       ? "--adapter_sequence_r2 ${params.adapter_R2}" : "",
+            "--compression 1"
         ].join(" ").trim()}
         publishDir = [
             [

Original file line number	Diff line number	Diff line change
`@@ -78,6 +78,7 @@ process {`
`78`	`78`	`params.trim_tail > 0 ? "--trim_tail1 ${params.trim_tail}" : "",`
`79`	`79`	`params.adapter_R1 ? "--adapter_sequence ${params.adapter_R1}" : "",`
`80`	`80`	`params.adapter_R2 ? "--adapter_sequence_r2 ${params.adapter_R2}" : "",`
	`81`	`+ "--compression 1"`
`81`	`82`	`].join(" ").trim()}`
`82`	`83`	`publishDir = [`
`83`	`84`	`[`