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Update nf-teams plugin version to 0.1.1
* fix mosdepth env issue on gcp * fix tests * bump tests * bump mosdepth * bump nf-test * add csi index to unstable keys * update changelog * revert nf-test bump * update snaps --------- Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
Add parameter typing
* bump nf-core version * fix files_unchanged * bump modules * drop custom registries in config * fix nf linting * fix nf-core linting * changelog * fix tests * fix nf-core linting
* changelog * fix snp samples rg * fix falco * fix commented tests
remove plugins define in nf-cmgg/configs to prevent overwriting versions
* Update nf-teams plugin version to 0.1.1 * back to dev * bump modules * add parameter typing * fix lint and bump nextflow * bump nf-test to strict syntax compatible version * fix fastq_to_aligned_cram * don't use params in subworkflows * fix mosdepth env issue on gcp (#166) * fix mosdepth env issue on gcp * fix tests * bump tests * bump mosdepth * bump nf-test * add csi index to unstable keys * update changelog * revert nf-test bump * update snaps --------- Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com> * add pixi env * fix tests * pre-commit * address review comments * recreate lock file for platforms + disable nextflow telemetry * Bump/template (#168) * bump nf-core version * fix files_unchanged * bump modules * drop custom registries in config * fix nf linting * fix nf-core linting * changelog * fix tests * fix nf-core linting * fix available genomes * update plugins and default params * fix falco issues (#170) * changelog * fix snp samples rg * fix falco * fix commented tests * bump version number --------- Co-authored-by: Nicolas Vannieuwkerke <101190534+nvnieuwk@users.noreply.github.com> Co-authored-by: Nicolas Vannieuwkerke <nicolas.vannieuwkerke@ugent.be>
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PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).