Fix gcta/addgrms test setup names

Author: lyh970817

modules/nf-core/gcta/addgrms/tests/main.nf.test

@@ -17,12 +17,12 @@ nextflow_process {
                 """
                 file('plink_simulated_ldms1.mbfile').text = 'plink_simulated\\n'
 
-                def bimFile = file(params.modules_testdata_base_path + 'genomics/homo_sapiens/popgen/plink_simulated.bim', checkIfExists: true)
-                def extractSnps = bimFile.readLines()
+                def ldms1BimFile = file(params.modules_testdata_base_path + 'genomics/homo_sapiens/popgen/plink_simulated.bim', checkIfExists: true)
+                def ldms1ExtractSnps = ldms1BimFile.readLines()
                     .take(10)
                     .collect { row -> row.trim().split(/\\s+/)[1] }
                     .join('\\n') + '\\n'
-                file('plink_simulated_ldms1.snps.txt').text = extractSnps
+                file('plink_simulated_ldms1.snps.txt').text = ldms1ExtractSnps
 
                 input[0] = [
                     [ id:'plink_simulated_ldms1' ],
@@ -33,7 +33,7 @@ nextflow_process {
                         file(params.modules_testdata_base_path + 'genomics/homo_sapiens/popgen/plink_simulated.bed', checkIfExists: true)
                     ],
                     [
-                        bimFile
+                        ldms1BimFile
                     ],
                     [
                         file(params.modules_testdata_base_path + 'genomics/homo_sapiens/popgen/plink_simulated.fam', checkIfExists: true)
@@ -50,13 +50,13 @@ nextflow_process {
                 """
                 file('plink_simulated_ldms2.mbfile').text = 'plink_simulated\\n'
 
-                def bimFile = file(params.modules_testdata_base_path + 'genomics/homo_sapiens/popgen/plink_simulated.bim', checkIfExists: true)
-                def extractSnps = bimFile.readLines()
+                def ldms2BimFile = file(params.modules_testdata_base_path + 'genomics/homo_sapiens/popgen/plink_simulated.bim', checkIfExists: true)
+                def ldms2ExtractSnps = ldms2BimFile.readLines()
                     .drop(10)
                     .take(10)
                     .collect { row -> row.trim().split(/\\s+/)[1] }
                     .join('\\n') + '\\n'
-                file('plink_simulated_ldms2.snps.txt').text = extractSnps
+                file('plink_simulated_ldms2.snps.txt').text = ldms2ExtractSnps
 
                 input[0] = [
                     [ id:'plink_simulated_ldms2' ],
@@ -67,7 +67,7 @@ nextflow_process {
                         file(params.modules_testdata_base_path + 'genomics/homo_sapiens/popgen/plink_simulated.bed', checkIfExists: true)
                     ],
                     [
-                        bimFile
+                        ldms2BimFile
                     ],
                     [
                         file(params.modules_testdata_base_path + 'genomics/homo_sapiens/popgen/plink_simulated.fam', checkIfExists: true)